Query psy13052
Match_columns 533
No_of_seqs 275 out of 516
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 18:13:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13052.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13052hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3686|consensus 100.0 1E-96 2E-101 807.8 31.9 432 1-432 55-520 (740)
2 PF02145 Rap_GAP: Rap/ran-GAP; 100.0 1.2E-59 2.6E-64 451.8 17.1 186 200-387 1-188 (188)
3 KOG3687|consensus 100.0 1.8E-33 3.8E-38 310.6 12.0 244 141-393 1400-1658(1697)
4 KOG3652|consensus 99.8 4.3E-18 9.2E-23 184.3 18.3 224 165-395 853-1203(1215)
5 KOG3686|consensus 98.0 1.8E-06 3.8E-11 97.5 2.3 74 416-489 158-234 (740)
6 PF02188 GoLoco: GoLoco motif; 61.9 4.3 9.3E-05 27.0 1.0 11 1-11 11-22 (23)
7 smart00390 GoLoco LGN motif, p 57.6 2.4 5.2E-05 29.0 -0.7 11 1-11 11-22 (26)
8 COG5161 SFT1 Pre-mRNA cleavage 28.5 1.8E+02 0.0039 35.3 7.7 94 227-332 954-1050(1319)
9 COG5609 Uncharacterized conser 23.9 75 0.0016 29.4 2.9 55 349-403 34-92 (124)
10 KOG1568|consensus 21.9 43 0.00092 32.7 1.0 45 13-58 77-129 (174)
11 PF06145 Corona_NS1: Coronavir 20.9 77 0.0017 21.9 1.8 19 295-313 11-29 (29)
12 KOG1130|consensus 20.1 53 0.0012 36.6 1.4 34 1-35 542-583 (639)
No 1
>KOG3686|consensus
Probab=100.00 E-value=1e-96 Score=807.78 Aligned_cols=432 Identities=37% Similarity=0.544 Sum_probs=379.5
Q ss_pred CCCccccccccCCCCCCcccH-----------------------HHHHHHHcCCCCCceEecCCCCceeeeCCCCCCCCC
Q psy13052 1 MQTSRDESRTSSSQHDKNNSK-----------------------ELLEETLRGSLPYPMIVTPPSGGYWLDGYENESRQN 57 (533)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~e~l~~~~p~p~i~~p~~~gywieg~~~~~~~~ 57 (533)
||++++...|+|+|.+..... ..+.+++-+.++++++++|.+|+||+||..+.....
T Consensus 55 ~~s~e~~~s~~s~~~~~~~~~~~~l~~~~~~~~~~sg~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~~e~~~~~e~~~ 134 (740)
T KOG3686|consen 55 MDSSETGDSMSSSPTIAEDNVFHDLLDSTPAFTSESGGELAWTWRRVISLVDPYGNSSAHVAPDCGSLTIENLSLVELHP 134 (740)
T ss_pred CCccccchhhccCCCcccccchhhhhhcccceecCcccccchhhhhhhccccccCCccccccccccccccccccccccCc
Confidence 678885555555777665542 134677888999999999999999999998766554
Q ss_pred CCCCCCCCCCCCCccccccchhhhHhhhcCCCcceeEEEecCCCCcEEEEEEEeeecCcceEEEEEec-cCCeEEEEecC
Q psy13052 58 SNSHQHGPTAPWRSKIECDDTAKCYRRFFLGREHSNFVGVDNELGPVLLSTKTELVGNQSHTRLLLRL-KTGTVHELLPP 136 (533)
Q Consensus 58 ~~~~~~~~~~~~~~~le~d~~a~~Yrk~F~gkeH~Ny~g~d~~lGpvilSik~e~~~~~~~~RiIlR~-k~Gt~~~~ip~ 136 (533)
..........++..+.++|.+|+||||||+||+|+||+|.|+.+||++||+++|..+++.+||||+|+ |+++.++.+|.
T Consensus 135 ~~~~~~~~~~~~~~le~~d~~a~~yr~~f~~keh~n~~g~d~~lgpi~lS~~~e~~~s~~h~Rii~rtlr~~~q~~~~p~ 214 (740)
T KOG3686|consen 135 LAHWLALVTVPPILLERCDLGARYYRKEFTGKEHPNYLGADELLGPIRLSQSREVPASCAHYRIIARTLRKMTQEDASPK 214 (740)
T ss_pred cccccccccCCCeeecccCchHHHHHHHHhcccCccccCCCchhceeEEEEeeeccccCcceEEEEecccccccccccCC
Confidence 44333344445566777888999999999999999999999999999999999988888889999999 99999999998
Q ss_pred CC--CCCChHHHHHHHhhhcCCCCcccccCchHHHHHHhhcccCcccceeEEEEEEeCCCCCHhHhhcCCCCCHHHHHHH
Q psy13052 137 NC--ANASPQTMARLVNEQLTCSSLTPVLCPQASSLIAAYDEHVLVSQFKFGVLYQRHGQITEEELFANKHTSPAFDQFL 214 (533)
Q Consensus 137 ~~--~~ps~~~~ak~l~~~l~~~~~~pv~~pk~~~~L~~lDe~~~~~~~KfGVlYvk~GQttEeEIlsN~~~S~~F~eFL 214 (533)
++ ..|....++...+......-+.++.+||++++|+.|||+.++.+|||||+|||.||+||||||+|+.+||+|+|||
T Consensus 215 s~~~~l~l~~~l~~~~p~~~~~~l~~~v~~pk~~~~l~~lDe~~~~~~~K~gIly~k~GQ~teEem~~Ne~~sPaF~eFL 294 (740)
T KOG3686|consen 215 SPSNSLPLFSMLASMNPEDEQILLRLLVNTPKVERALVILDEQVISITHKFGILYVKTGQKTEEEMYNNERGSPAFEEFL 294 (740)
T ss_pred CccccCChHHHHHhhCchhhhhhhhhcccChHHHHHHHhhhhhhheeeeeEEEEEecccCccHHHHhcCCccChhHHHHH
Confidence 77 3333344554443333334457889999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEecCCCCCcccCcccCCCCCCCEEEEEeecceEEEEEeccCCCCCCCChhhhhhccccCCCeEEEEEeCCCCCC
Q psy13052 215 NLLGQRILLKDHKGYRGGLDTQFRQTGEQAVYQVFKEREIMFHVSTLLPFTENDPQQLQRKRHIGNDIVAIVFQETNTPF 294 (533)
Q Consensus 215 ~~LG~~V~Lk~~~gy~GGLD~~~~~tG~~svY~~~~~~EImFHVsTlLP~~~~D~Qql~RKRHIGNDiV~IVf~E~~~~f 294 (533)
++|||+|+|++|+||+||||+++++||++++||.|+++||||||||||||+++|+||++||||||||+|+|||+|.+.||
T Consensus 295 ~~LGq~V~Lkgf~gyrggLdtk~dsTG~~svY~~~~~~EImFHvst~lp~~~~d~qq~~r~rHignDiV~ivfqe~~~pf 374 (740)
T KOG3686|consen 295 ALLGQFVSLKGFQGYRGGLDTKNDSTGTTSIYTQYQKLEIMFHVSTMLPYTDGDPQQLQRKRHIGNDIVTIVFQEEGTPF 374 (740)
T ss_pred HHhhceeeccchHHHhhhhcccCCCCCceeeEEeecceEEEEecCccCCCCCCCHHHhccccccCcceEEEEeecCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccceEEEEEEecCCCCCCCcEEEEEEecCCCCCCCCCCCCCceecCChhhHHHHHHHHhhhhHhhhhchhhhh
Q psy13052 295 SPDMIASHFLHAFIVVQVIDPNTPNTRYKVSVTARDDVPFFGPNFPQPAIFRADSDFKEFLLTKLINAENAAYKAHKFAK 374 (533)
Q Consensus 295 ~p~~I~SqF~hv~IVV~p~~~~~~~~~YrV~V~~r~~Vp~FGP~lp~~~Vf~k~~~f~~fLl~KlINae~a~~~s~~Fa~ 374 (533)
.|++|+|+|.||||||+|+.+|+.+..|+|+|+++++||+|||++|.++||+++++|++|||+|+||||||++++.+|++
T Consensus 375 ~p~~i~ShF~hvf~~v~~~~~~t~~~~y~~~it~~~~vp~fgp~l~~~~vf~~~~~f~~fLlak~INae~A~~~s~kf~~ 454 (740)
T KOG3686|consen 375 SPGTIRSHFQHVFIVVRPHGPCTENVKYRVAITSKDDVPFFGPPLPTGDVFKKGTVFRNFLLAKAINAERAAGESIKFLQ 454 (740)
T ss_pred CCccchhccceeEEEEEEcCCCCcccceeEEeecCCccCCcCCCCCCccccccccHHHHHHHHHHhcccchhcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccccCCC------CCCCCCCCCCCCCCCCCc--cccceeeeEEEe
Q psy13052 375 LELRTRSSLLHSLCEELKEKTREFLGGE------GEDTRHGDTSNGSGTGTR--FIDTEHSNFVGV 432 (533)
Q Consensus 375 ~~~RtR~~lL~~l~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~--Fl~~~k~~f~g~ 432 (533)
++.|||++||++|++++...+..+++.. .++.++..+.+.++++.. |+..++...+.+
T Consensus 455 ~~~rtR~~lL~~L~e~~~~~~~~~~~~~~s~~~~~~~~p~~~~~~~~a~~~~~a~~~~vk~~~~~~ 520 (740)
T KOG3686|consen 455 MADRTRDDLLDDLPENLVPSTTDEAAQFTSMISLGSRQPQPLKTSSAAHDHLPAFTWNVKLLEWRS 520 (740)
T ss_pred HHHHHHHHHHHHHHHhcCCCccccccccchhhhhcCCCCCcCCCCCcccccchhhhhhhhhhhhcc
Confidence 9999999999999999999997766631 123555666655555555 888888887774
No 2
>PF02145 Rap_GAP: Rap/ran-GAP; InterPro: IPR000331 The Rap/ran-GAP domain is found in the GTPase activating protein (GAP) responsible for the activation of nuclear Ras-related regulatory proteins Rap1, Rsr1 and Ran in vitro converting it to the putatively inactive GDP-bound state [, ]. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. RanGAP is a leucine rich repeat containing protein which forms a highly curved crescent. Each LRR forms a short beta-strand and a longer alpha-helix that results in a beta-alpha hairpin motif []. The domain is also present in tuberin (a tuberous sclerosis homologue protein) that specifically stimulates the intrinsic GTPase activity of Ras-related protein Rap1A suggesting a possible mechanism for its role in the regulation of cellular growth.; GO: 0005096 GTPase activator activity, 0051056 regulation of small GTPase mediated signal transduction, 0005622 intracellular; PDB: 1SRQ_C 3BRW_B.
Probab=100.00 E-value=1.2e-59 Score=451.77 Aligned_cols=186 Identities=47% Similarity=0.767 Sum_probs=141.7
Q ss_pred hhcCCCCCHHHHHHHHhcCCeEecCCCCCcccCcccCCCCCCCEEEEEeecceEEEEEeccCCCCCCCChhhhhhccccC
Q psy13052 200 LFANKHTSPAFDQFLNLLGQRILLKDHKGYRGGLDTQFRQTGEQAVYQVFKEREIMFHVSTLLPFTENDPQQLQRKRHIG 279 (533)
Q Consensus 200 IlsN~~~S~~F~eFL~~LG~~V~Lk~~~gy~GGLD~~~~~tG~~svY~~~~~~EImFHVsTlLP~~~~D~Qql~RKRHIG 279 (533)
||+|+++|++|++||++|||+|+|++|+||+||||++.+.||++++||++.+.|||||||||||+.++|+||++||||||
T Consensus 1 il~N~~~S~~f~~Fl~~LG~~V~L~~~~~y~GGLD~~~~~~G~~s~y~~~~~~EimFHVstlmP~~~~d~q~~~KKrhIG 80 (188)
T PF02145_consen 1 ILSNTEGSPRFEEFLSSLGWKVDLKGHKGYSGGLDTKNDTTGEYSYYYADDIYEIMFHVSTLMPNNENDPQQLEKKRHIG 80 (188)
T ss_dssp HHT--S--HHHHHHHHHHSEEEESTT--S--TT--SSS-TT-SEEEEEESSS-EEEEEECCCS---TT-SSSHHHHHHHT
T ss_pred CCCCCcCCHHHHHHHHHhCCEEEcCCCcCcCCCCCccccCCCCEEEEEEeCCEEEEEEecccCCCCCCChHHHHHHHHhc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCCCCCccccccceEEEEEEecCCC-CCCCcEEEEEEecCCCCCCCCCCCCCceecCChhhHHHHHHH
Q psy13052 280 NDIVAIVFQETNTPFSPDMIASHFLHAFIVVQVIDPN-TPNTRYKVSVTARDDVPFFGPNFPQPAIFRADSDFKEFLLTK 358 (533)
Q Consensus 280 NDiV~IVf~E~~~~f~p~~I~SqF~hv~IVV~p~~~~-~~~~~YrV~V~~r~~Vp~FGP~lp~~~Vf~k~~~f~~fLl~K 358 (533)
||+|+|||+|++.+|+|++|+||||||+|||+|+... ....+|+|+|.+|++||+|||++|++.|+.+ .|++|||+|
T Consensus 81 ND~V~IVf~E~~~~y~~~~i~SqFn~V~IvI~p~~~~~~~~~~y~V~v~~k~~v~~fgP~~~~~~v~~~--~l~~~vr~~ 158 (188)
T PF02145_consen 81 NDIVVIVFNESGQPYDPSTIKSQFNHVFIVIYPLSNGSSKSPLYRVSVVRKDDVPPFGPLLPESIVSKK--SLPEFVRQK 158 (188)
T ss_dssp T-SEEEEEESS-----GGGS--SS--EEEEEEEES--SSSS-EEEEEEEE-TTS---SS---SS-EEES--HHHHHHHHH
T ss_pred CCEEEEEEeCCCCccChhhccccCceEEEEEEecccCCCCCceEEEEEEEcCCCCCcCCCCCCCeECHH--HHHHHHHHH
Confidence 9999999999999999999999999999999999743 3345999999999999999999999988754 999999999
Q ss_pred HhhhhHhhhhc-hhhhhhHHHHHHHHHHHH
Q psy13052 359 LINAENAAYKA-HKFAKLELRTRSSLLHSL 387 (533)
Q Consensus 359 lINae~a~~~s-~~Fa~~~~RtR~~lL~~l 387 (533)
+|||++||+.+ ++|+++..|+|+++|++|
T Consensus 159 ~ina~~a~~~~~~~f~~~~~~~r~~~i~~i 188 (188)
T PF02145_consen 159 AINAERAARSSQPQFASPWRRRRQRLIKDI 188 (188)
T ss_dssp HHHHHHHHTTS-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhHHhhhHHHHHHHHHhccC
Confidence 99999999999 999999999999999986
No 3
>KOG3687|consensus
Probab=100.00 E-value=1.8e-33 Score=310.60 Aligned_cols=244 Identities=28% Similarity=0.391 Sum_probs=189.5
Q ss_pred CChHHHHHHHhhhcCCCCcccccCc----hHHHHHHhhcccCcccceeEEEEEEeCCCC-CHhHhhcCCCCCHHHHHHHH
Q psy13052 141 ASPQTMARLVNEQLTCSSLTPVLCP----QASSLIAAYDEHVLVSQFKFGVLYQRHGQI-TEEELFANKHTSPAFDQFLN 215 (533)
Q Consensus 141 ps~~~~ak~l~~~l~~~~~~pv~~p----k~~~~L~~lDe~~~~~~~KfGVlYvk~GQt-tEeEIlsN~~~S~~F~eFL~ 215 (533)
|+-..|.-+.-++++-..=.|++.| .+.+++..+|..|..++||+||+||+.||. +|-+||+|+++|.+|.|||.
T Consensus 1400 psf~F~qly~~p~~g~~~n~PLllp~e~~s~~rAVSl~D~iP~~EthKiGvlYVG~gQ~n~E~~IL~N~hgS~ry~eFL~ 1479 (1697)
T KOG3687|consen 1400 PSFVFLQLYHSPFFGDESNKPLLLPNESQSFERAVSLLDQIPSYETHKIGVLYVGEGQSNSELAILSNEHGSYRYTEFLT 1479 (1697)
T ss_pred cchhhHhhhcCcccccccCCceecCCcchhHHHHHHHHHhCCccccceeeEEEEcccccccHHHHHhcCCccHHHHHHHh
Confidence 3333343333344442223455443 357899999999999999999999999999 79999999999999999999
Q ss_pred hcCCeEecCCCC--CcccCcccCCCCCCCEEEEEeecceEEEEEeccCCCCC-CCChhhhhhccccCCCeEEEEEeCCCC
Q psy13052 216 LLGQRILLKDHK--GYRGGLDTQFRQTGEQAVYQVFKEREIMFHVSTLLPFT-ENDPQQLQRKRHIGNDIVAIVFQETNT 292 (533)
Q Consensus 216 ~LG~~V~Lk~~~--gy~GGLD~~~~~tG~~svY~~~~~~EImFHVsTlLP~~-~~D~Qql~RKRHIGNDiV~IVf~E~~~ 292 (533)
.||..|+||+.. .|.||||.. +.+|.+++.|.++..+++|||+||||++ ++||.+.+||||||||+|.|||+|++.
T Consensus 1480 glGTL~eLK~~q~~~~~ggLDR~-g~DG~FAYcWKDdI~Q~vFH~aTlMPTN~~dDP~C~~KKrHIGNDFV~IIyNESGe 1558 (1697)
T KOG3687|consen 1480 GLGTLIELKDCQPDVYLGGLDRC-GEDGQFAYCWKDDIMQAVFHIATLMPTNDVDDPRCDKKKRHIGNDFVSIIYNESGE 1558 (1697)
T ss_pred CcceEEEeccccccceeeeeccc-CCCCceEEEehhhhHHHhhhhhhccccccccCCCCchhhhhcCCceEEEEecCCcc
Confidence 999999999974 499999976 5999999999999999999999999987 789999999999999999999999999
Q ss_pred CCCCCccccccceEEEEEEecCCCCCCCcEEEEEEecCCCCCCCCCCCCCceecCChhhHHHHHHHHhhhhHhh--hh--
Q psy13052 293 PFSPDMIASHFLHAFIVVQVIDPNTPNTRYKVSVTARDDVPFFGPNFPQPAIFRADSDFKEFLLTKLINAENAA--YK-- 368 (533)
Q Consensus 293 ~f~p~~I~SqF~hv~IVV~p~~~~~~~~~YrV~V~~r~~Vp~FGP~lp~~~Vf~k~~~f~~fLl~KlINae~a~--~~-- 368 (533)
.|+.++|++|||.|+|||.|++.+. -||.+.+|.++-.|-=. ..-.|+ .++.+--..++.++||.-|+ |.
T Consensus 1559 EY~l~TI~gQFNfv~VIVtPld~~~----nRv~~q~r~~~~KFv~~-~~YkIV-Sdr~lP~~aRqmaLhAn~aS~VYhs~ 1632 (1697)
T KOG3687|consen 1559 EYKLGTIKGQFNFVHVIVTPLDYEC----NRVSLQCRKDMEKFVDT-SVYKIV-SDRNLPFVARQMALHANMASQVYHSS 1632 (1697)
T ss_pred ccccCccccccceEEEEeccchhhh----hHHHHHHHHHHHhheee-eeEEEe-cCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999997543 36666666665543211 111233 35677778899999998875 33
Q ss_pred --chhhhhh-HHHHHHHHHHHHHHHHHh
Q psy13052 369 --AHKFAKL-ELRTRSSLLHSLCEELKE 393 (533)
Q Consensus 369 --s~~Fa~~-~~RtR~~lL~~l~~~~~~ 393 (533)
++.|+.+ .+|-| .|+-|-+|+.+
T Consensus 1633 ~~~~~Y~s~W~ERLR--~LKRLR~K~~e 1658 (1697)
T KOG3687|consen 1633 NPTDIYPSKWIERLR--HLKRLRQKICE 1658 (1697)
T ss_pred CcCCcchHHHHHHHH--HHHHHHHHHHH
Confidence 3445543 23433 34555555544
No 4
>KOG3652|consensus
Probab=99.78 E-value=4.3e-18 Score=184.25 Aligned_cols=224 Identities=19% Similarity=0.292 Sum_probs=175.0
Q ss_pred chHHHHHHh-hcccCcccceeEEEEEEeCCCCCHhHhhcCC----CCCHHHHHHHHhcCCeEecCCCCCcccCcccCCC-
Q psy13052 165 PQASSLIAA-YDEHVLVSQFKFGVLYQRHGQITEEELFANK----HTSPAFDQFLNLLGQRILLKDHKGYRGGLDTQFR- 238 (533)
Q Consensus 165 pk~~~~L~~-lDe~~~~~~~KfGVlYvk~GQttEeEIlsN~----~~S~~F~eFL~~LG~~V~Lk~~~gy~GGLD~~~~- 238 (533)
.|+.++|-. +|-.+.|....+.|+|+|+||.+..|||.|. ...|+|-+||..|||-|++.-|+||+|...|.|.
T Consensus 853 ekFfdDig~tlD~~P~RpfdTafIFYmK~GQk~~qdILeNaensqn~~p~F~eFL~nLG~~idiGrH~gWTGHvSTawSi 932 (1215)
T KOG3652|consen 853 EKFFDDIGETLDCAPARPFDTAFIFYMKEGQKIAQDILENAENSQNSCPDFCEFLANLGEGIDIGRHDGWTGHVSTAWSI 932 (1215)
T ss_pred HHHHHhhhhhcccccCCccceEEEEEeccchhhHHHHHHhHhhccccChHHHHHHHhcccceeeccCCCccceeeeeeee
Confidence 457778865 9999999999999999999999999999996 4569999999999999999999999999988774
Q ss_pred -----------------------CCC-CEEEEEee---cceEEEEEeccCCC-----------CCC------CC------
Q psy13052 239 -----------------------QTG-EQAVYQVF---KEREIMFHVSTLLP-----------FTE------ND------ 268 (533)
Q Consensus 239 -----------------------~tG-~~svY~~~---~~~EImFHVsTlLP-----------~~~------~D------ 268 (533)
.+| ++++||++ ...||.|-|++--| ... ++
T Consensus 933 nccddgEgk~QE~~d~eD~gasIfdG~k~aL~~aDeqgalsEiAFlmPserpVe~~kdnieSp~iSsdqdSdnNrsivsd 1012 (1215)
T KOG3652|consen 933 NCCDDGEGKLQEEADGEDHGASIFDGIKHALWWADEQGALSEIAFLMPSERPVEMFKDNIESPAISSDQDSDNNRSIVSD 1012 (1215)
T ss_pred ccccccchhhhhhcccccchhhhhcchhhheeeecccCccceeEEeccCcchHHHHhhcccCCcccccccCcCccccccc
Confidence 355 67899999 66999999988322 110 00
Q ss_pred ----------h-------------------hhh-----hhc----ccc----CCCeEEEEEeCCCC---CCC--------
Q psy13052 269 ----------P-------------------QQL-----QRK----RHI----GNDIVAIVFQETNT---PFS-------- 295 (533)
Q Consensus 269 ----------~-------------------Qql-----~RK----RHI----GNDiV~IVf~E~~~---~f~-------- 295 (533)
+ |.+ -+| +.+ |--.|++||.|... .|.
T Consensus 1013 ~dl~~gi~kd~~mmLn~elf~ehsdnl~Sdq~~~Psa~~~kl~~g~pV~plg~a~ki~lVWlER~dDienFPisELi~e~ 1092 (1215)
T KOG3652|consen 1013 DDLFDGIHKDNGMMLNAELFGEHSDNLLSDQDFRPSAGGGKLMGGGPVGPLGGALKIMLVWLERPDDIENFPISELIGEC 1092 (1215)
T ss_pred cccccccccCCcceecHhhccccCCccccccccCccccCCCCCCCCCCCCCCCceEEEEEEeecccccccCcHHHHhccc
Confidence 0 000 001 111 23389999999753 332
Q ss_pred -------------CCcc---ccccceEEEEEEecCCCCCCCcEEEEEE-ecCCCCCCCCCCCCCceecCChhhHHHHHHH
Q psy13052 296 -------------PDMI---ASHFLHAFIVVQVIDPNTPNTRYKVSVT-ARDDVPFFGPNFPQPAIFRADSDFKEFLLTK 358 (533)
Q Consensus 296 -------------p~~I---~SqF~hv~IVV~p~~~~~~~~~YrV~V~-~r~~Vp~FGP~lp~~~Vf~k~~~f~~fLl~K 358 (533)
|... .++--|-.|+|+|++ .+.|+|++. +.......||+++++.| .-+.|..|++++
T Consensus 1093 d~Gtd~~a~~aqkpei~~aTnleka~~iIFIH~le----~GifqIkiqGatgkF~~a~PLVDGmiV--S~~aLgf~iRnT 1166 (1215)
T KOG3652|consen 1093 DDGTDLLAGGAQKPEIGGATNLEKAHHIIFIHLLE----PGIFQIKIQGATGKFGEAGPLVDGMIV--SLAALGFFIRNT 1166 (1215)
T ss_pred ccchhhhcCCccCccccCcccccccceEEEEEecC----CceEEEEeeccccccccccccccceee--ehhhhhHHHHHH
Confidence 2222 233346679999997 478999997 34557788999999866 468999999999
Q ss_pred HhhhhHh-hhhchhhhhhHHHHHHHHHHHHHHHHHhhc
Q psy13052 359 LINAENA-AYKAHKFAKLELRTRSSLLHSLCEELKEKT 395 (533)
Q Consensus 359 lINae~a-~~~s~~Fa~~~~RtR~~lL~~l~~~~~~~~ 395 (533)
+||.++. ....+.|..++.| |++.|-++++||..+.
T Consensus 1167 iiNicRR~r~E~dnYs~PHtR-RKQaItd~akKY~~Kq 1203 (1215)
T KOG3652|consen 1167 IINICRRDRAEIDNYSFPHTR-RKQAITDFAKKYAAKQ 1203 (1215)
T ss_pred HHHHHHhhhhhhccCCCcchh-hHHHHHHHHHHHhhhh
Confidence 9999987 6789999999999 9999999999999887
No 5
>KOG3686|consensus
Probab=98.04 E-value=1.8e-06 Score=97.51 Aligned_cols=74 Identities=27% Similarity=0.449 Sum_probs=68.0
Q ss_pred CCCCccccceeeeEEEecCCCceeEeeeeeeEecccceeehhhhc-ccCccccccCCCCCCCChh--HHHhhhccch
Q psy13052 416 GTGTRFIDTEHSNFVGVDNELGPVLLSTKTELVGNQSHTRLLLRL-KTGTVHELLPPNCANASPQ--TMARLRTRSS 489 (533)
Q Consensus 416 ~~~~~Fl~~~k~~f~g~d~~lg~l~lS~k~e~v~~qe~lRiiLR~-r~~t~~~~ip~~~~~~~p~--~~akl~~~~~ 489 (533)
.|+.+|++++|.++.|.|..+|++.+|+++|.+++++|+|||+|+ |.+|.||.+|.+++...|. .||++.|.+.
T Consensus 158 ~yr~~f~~keh~n~~g~d~~lgpi~lS~~~e~~~s~~h~Rii~rtlr~~~q~~~~p~s~~~~l~l~~~l~~~~p~~~ 234 (740)
T KOG3686|consen 158 YYRKEFTGKEHPNYLGADELLGPIRLSQSREVPASCAHYRIIARTLRKMTQEDASPKSPSNSLPLFSMLASMNPEDE 234 (740)
T ss_pred HHHHHHhcccCccccCCCchhceeEEEEeeeccccCcceEEEEecccccccccccCCCccccCChHHHHHhhCchhh
Confidence 578899999999999999999999999999999999999999999 9999999999988776655 7999777666
No 6
>PF02188 GoLoco: GoLoco motif; InterPro: IPR003109 In heterotrimeric G-protein signalling, cell surface receptors (GPCRs) are coupled to membrane-associated heterotrimers comprising a GTP-hydrolysing subunit G-alpha and a G-beta/G-gamma dimer. The inactive form contains the alpha subunit bound to GDP and complexes with the beta and gamma subunit. When the ligand is associated to the receptor, GDP is displaced from G-alpha and GTP is bound. GTP/G-alpha complex dissociates from the trimer and associates to an effector until the intrinsic GTPase activity of G-alpha returns the protein to GDP bound form. Reassociation of GDP bound G-alpha with G-beta/G-gamma dimer terminates the signal. Several mechanisms regulate the signal output at different stage of the G-protein cascade. Two classes of intracellular proteins act as inhibitors of G protein activation: GTPase activating proteins (GAPs), which enhance GTP hydrolysis (see PDOC50132 from PROSITEDOC), and guanine dissociation inhibitors (GDIs), which inhibit GDP dissociation. The GoLoco or G-protein regulatory (GPR) motif found in various G-protein regulators [, ] acts as a GDI on G-alpha(i) [, ]. The crystal structure of the GoLoco motif in complex with G-alpha(i) has been solved []. It consists of three small alpha helices. The highly conserved Asp-Gln-Arg triad within the GoLoco motif participates directly in GDP binding by extending the arginine side chain into the nucleotide binding pocket, highly reminiscent of the catalytic arginine finger employed in GTPase-activating protein (see PDOC50238 from PROSITEDOC). This addition of an arginine in the binding pocket affects the interaction of GDP with G-alpha and therefore is certainly important for the GoLoco GDI activity []. Some proteins known to contain a GoLoco motif are listed below: Mammalian regulators of G-protein signalling 12 and 14 (RGS12 and RGS14), multifaceted signal transduction regulators. Loco, the drosophila RGS12 homologue. Mammalian Purkinje-cell protein-2 (Pcp2). It may function as a cell-type specific modulator for G protein-mediated cell signalling. It is uniquely expressed in cerebellar Purkinje cells and in retinal bipolar neurons. Eukaryotic Rap1GAP. A GTPase activator for the nuclear ras-related regulatory protein RAP-1A. Drosophila protein Rapsynoid (also known as Partner of Inscuteable, Pins) and its mammalian homologues AGS3 and LGN. They form a G-protein regulator family that also contains TPR repeats. ; GO: 0005096 GTPase activator activity, 0007165 signal transduction; PDB: 1KJY_D 3ONW_D 2XNS_D 3QI2_C 2OM2_D.
Probab=61.88 E-value=4.3 Score=27.01 Aligned_cols=11 Identities=55% Similarity=0.809 Sum_probs=10.0
Q ss_pred CCCcc-cccccc
Q psy13052 1 MQTSR-DESRTS 11 (533)
Q Consensus 1 ~~~~~-~~~~~~ 11 (533)
+|++| |+|||+
T Consensus 11 ~Q~~RmddQR~~ 22 (23)
T PF02188_consen 11 VQSSRMDDQRCS 22 (23)
T ss_dssp CCCCCGCSSSSS
T ss_pred HHhcchhhhccC
Confidence 69999 999997
No 7
>smart00390 GoLoco LGN motif, putative GEFs specific for G-alpha GTPases. GEF specific for Galpha_i proteins
Probab=57.56 E-value=2.4 Score=29.02 Aligned_cols=11 Identities=55% Similarity=0.830 Sum_probs=10.2
Q ss_pred CCCcc-cccccc
Q psy13052 1 MQTSR-DESRTS 11 (533)
Q Consensus 1 ~~~~~-~~~~~~ 11 (533)
+||+| |+|||+
T Consensus 11 ~Qs~RmdDQR~~ 22 (26)
T smart00390 11 MQSSRMDDQRCE 22 (26)
T ss_pred HHhhhHhhhccc
Confidence 69999 999998
No 8
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
Probab=28.47 E-value=1.8e+02 Score=35.29 Aligned_cols=94 Identities=29% Similarity=0.379 Sum_probs=51.8
Q ss_pred CCcccCcccCCCCCCCEEEEEeecceEEEEEeccCCCCCCCChhhhhhcc-ccCCCeEEEEEeCCC-CCCCCCccccccc
Q psy13052 227 KGYRGGLDTQFRQTGEQAVYQVFKEREIMFHVSTLLPFTENDPQQLQRKR-HIGNDIVAIVFQETN-TPFSPDMIASHFL 304 (533)
Q Consensus 227 ~gy~GGLD~~~~~tG~~svY~~~~~~EImFHVsTlLP~~~~D~Qql~RKR-HIGNDiV~IVf~E~~-~~f~p~~I~SqF~ 304 (533)
.||+|++|--+-.+=+..==|.|+..|++||+..+|-. +.|...+|| .| .|..-|-|+. .|- +. -.
T Consensus 954 eg~~~~vdL~spksw~vID~yef~~ne~v~~i~~~~l~---~~~~tk~k~pyi---~vgtt~~~gED~p~-----rG-~~ 1021 (1319)
T COG5161 954 EGYRFYVDLYSPKSWEVIDTYEFDENEYVFHIKYLILD---DMQGTKGKSPYI---LVGTTFIEGEDRPA-----RG-RL 1021 (1319)
T ss_pred ccceeeEEEecCcceeEeeeeecccceeeeeeeeeeee---ccccccCCCceE---EEEeeecccCccCC-----cC-ce
Confidence 47899998654333333333567889999999987652 334444444 33 4555555543 221 12 23
Q ss_pred eEEEEEEec-CCCCCCCcEEEEEEecCCC
Q psy13052 305 HAFIVVQVI-DPNTPNTRYKVSVTARDDV 332 (533)
Q Consensus 305 hv~IVV~p~-~~~~~~~~YrV~V~~r~~V 332 (533)
|++=||..+ .|..|.+.|+.++..++++
T Consensus 1022 hv~eII~VVP~pg~P~t~~KLK~~~~Ee~ 1050 (1319)
T COG5161 1022 HVLEIISVVPSPGSPFTDCKLKVLGIEET 1050 (1319)
T ss_pred EEEEEEEecCCCCCCcccceeeEEehhhc
Confidence 777333322 2455566677666555443
No 9
>COG5609 Uncharacterized conserved protein [Function unknown]
Probab=23.89 E-value=75 Score=29.45 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=42.8
Q ss_pred hhhHHHHHHHHhh----hhHhhhhchhhhhhHHHHHHHHHHHHHHHHHhhcccccCCCC
Q psy13052 349 SDFKEFLLTKLIN----AENAAYKAHKFAKLELRTRSSLLHSLCEELKEKTREFLGGEG 403 (533)
Q Consensus 349 ~~f~~fLl~KlIN----ae~a~~~s~~Fa~~~~RtR~~lL~~l~~~~~~~~~~~~g~~~ 403 (533)
.-|++++...|=| +|+..+.++.=..+-.+||..|++++++.+.....+++|...
T Consensus 34 ~f~~nm~i~sL~G~Ltp~E~~~~~~~eg~~mv~~tRtelvk~~~k~l~~~iekiiG~kv 92 (124)
T COG5609 34 DFLDNMAIISLEGILTPAEYFLLSTKEGEIMVKQTRTELVKSGYKDLPEIIEKIIGAKV 92 (124)
T ss_pred ehhhhhhhhhhhcccCHHHhhhccCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHH
Confidence 4455665555544 466666777677788899999999999999999999999764
No 10
>KOG1568|consensus
Probab=21.94 E-value=43 Score=32.67 Aligned_cols=45 Identities=16% Similarity=0.303 Sum_probs=30.5
Q ss_pred CCCCCcccHHHHHHHHcC--------CCCCceEecCCCCceeeeCCCCCCCCCC
Q psy13052 13 SQHDKNNSKELLEETLRG--------SLPYPMIVTPPSGGYWLDGYENESRQNS 58 (533)
Q Consensus 13 ~~~~~~~~~~~~~e~l~~--------~~p~p~i~~p~~~gywieg~~~~~~~~~ 58 (533)
+.+|-++.+..|..|+.- +-+-+++.+|. |=+|+||-++-.++|+
T Consensus 77 l~sP~~p~~~~iKRv~alegd~~~t~~~k~~~v~vpk-ghcWVegDn~~hs~DS 129 (174)
T KOG1568|consen 77 LKSPNDPDKVIIKRVAALEGDIMVTEDEKEEPVVVPK-GHCWVEGDNQKHSYDS 129 (174)
T ss_pred EeCCCChhheeeeeeecccccEeccCCCCCCceecCC-CcEEEecCCccccccc
Confidence 456666666666655443 34667888995 8899999776555554
No 11
>PF06145 Corona_NS1: Coronavirus nonstructural protein NS1; InterPro: IPR009314 One of the members of this family is a 4.9 kDa proteins, encoded by Bovine coronavirus NS1 [].
Probab=20.90 E-value=77 Score=21.91 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=15.3
Q ss_pred CCCccccccceEEEEEEec
Q psy13052 295 SPDMIASHFLHAFIVVQVI 313 (533)
Q Consensus 295 ~p~~I~SqF~hv~IVV~p~ 313 (533)
.|+.|--.||||..+|+|+
T Consensus 11 ~pddilhp~nhv~liir~i 29 (29)
T PF06145_consen 11 APDDILHPFNHVNLIIRPI 29 (29)
T ss_pred CcccccCcccceeEEEecC
Confidence 4677777899999999884
No 12
>KOG1130|consensus
Probab=20.11 E-value=53 Score=36.58 Aligned_cols=34 Identities=29% Similarity=0.269 Sum_probs=24.5
Q ss_pred CCCcc-ccccccCCCCCCcccH-------HHHHHHHcCCCCCc
Q psy13052 1 MQTSR-DESRTSSSQHDKNNSK-------ELLEETLRGSLPYP 35 (533)
Q Consensus 1 ~~~~~-~~~~~~~~~~~~~~~~-------~~~~e~l~~~~p~p 35 (533)
.||+| |||| |.||++.+|.. +.+-++|-+++|-|
T Consensus 542 ~Qg~RLdeQR-SeLP~~~~tm~~~~ee~d~~~~d~~v~~ap~~ 583 (639)
T KOG1130|consen 542 VQGERLDEQR-SELPPIKPTMTNGQEEVDKDFFDILVKCAPPP 583 (639)
T ss_pred hhhhhhhhhh-hcCCCCCCccCCccccCCchhhhhhcccCCCc
Confidence 39999 9999 66999998832 24556666776644
Done!