Query psy13052
Match_columns 533
No_of_seqs 275 out of 516
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 18:14:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13052.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13052hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1srq_A RAP1GAP, GTPase-activat 100.0 5E-105 2E-109 824.7 38.5 336 68-403 2-339 (341)
2 1srq_A RAP1GAP, GTPase-activat 99.0 1.4E-10 4.6E-15 120.2 3.6 73 416-488 15-89 (341)
3 4g5s_E PINS homolog, G-protein 40.4 10 0.00036 24.6 1.2 10 2-11 12-22 (26)
4 3da0_A Cleaved chimeric recept 10.7 1.6E+02 0.0056 26.4 3.0 59 271-341 46-119 (136)
5 1k2d_P MBP peptide, myelin bas 9.7 1E+02 0.0035 19.9 1.0 11 513-523 13-23 (26)
6 3pow_A Calreticulin; legume le 9.3 2.8E+02 0.0094 27.6 4.4 42 280-327 132-178 (265)
7 3dgp_B RNA polymerase II trans 8.8 90 0.0031 25.2 0.5 27 486-513 11-37 (71)
8 1cf4_B Protein (activated P21C 8.1 2E+02 0.0069 21.1 2.1 28 506-533 13-41 (44)
9 1toh_A Tyroh, tyrosine hydroxy 7.9 1.6E+02 0.0054 30.4 2.1 28 366-393 34-61 (343)
10 4dxy_A Cytochrome P450, CYP101 7.9 2E+02 0.007 29.1 3.0 24 25-48 43-66 (417)
No 1
>1srq_A RAP1GAP, GTPase-activating protein 1; mixed alpha-beta, signaling protein; 2.90A {Homo sapiens} SCOP: e.55.1.1 PDB: 3brw_A*
Probab=100.00 E-value=5.1e-105 Score=824.67 Aligned_cols=336 Identities=56% Similarity=0.931 Sum_probs=323.1
Q ss_pred CCCccccccchhhhHhhhcCCCcceeEEEecCCCCcEEEEEEEeeecCcceEEEEEeccCCeEEEEecCCC--CCCChHH
Q psy13052 68 PWRSKIECDDTAKCYRRFFLGREHSNFVGVDNELGPVLLSTKTELVGNQSHTRLLLRLKTGTVHELLPPNC--ANASPQT 145 (533)
Q Consensus 68 ~~~~~le~d~~a~~Yrk~F~gkeH~Ny~g~d~~lGpvilSik~e~~~~~~~~RiIlR~k~Gt~~~~ip~~~--~~ps~~~ 145 (533)
+|+++||+|.+|+||||||+||||+||+|+|+.+||++|||++|+.+++++||+|||+++|++++.||.++ ..|++.+
T Consensus 2 ~~~~~le~d~~~~~Yr~~F~gk~H~n~~g~d~~lGpvilSi~~e~~~~~~~~r~ilRt~~gt~~~~ip~~~~~~~p~~~~ 81 (341)
T 1srq_A 2 TTKVKLECNPTARIYRKHFLGKEHFNYYSLDTALGHLVFSLKYDVIGDQEHLRLLLRTKCRTYHDVIPISCLTEFPNVVQ 81 (341)
T ss_dssp --CCCCCSCGGGGHHHHHTTTSSCEEEEEEETTTEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECCCC--CCCHHH
T ss_pred CcceEeecCCcchHHHhhCCCCceeeEEEEcCCCCcEEEEEEEeccCCceeEEEEEEcCCccEEEEEEccccccCCCHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999987 5788999
Q ss_pred HHHHHhhhcCCCCcccccCchHHHHHHhhcccCcccceeEEEEEEeCCCCCHhHhhcCCCCCHHHHHHHHhcCCeEecCC
Q psy13052 146 MARLVNEQLTCSSLTPVLCPQASSLIAAYDEHVLVSQFKFGVLYQRHGQITEEELFANKHTSPAFDQFLNLLGQRILLKD 225 (533)
Q Consensus 146 ~ak~l~~~l~~~~~~pv~~pk~~~~L~~lDe~~~~~~~KfGVlYvk~GQttEeEIlsN~~~S~~F~eFL~~LG~~V~Lk~ 225 (533)
++|++|+.++..++.|++.|++.++|..||+++++++||||||||++||++|+|||+|+++|++|.+||+.|||+|+|++
T Consensus 82 ~~k~~~~~~~~~~~~pi~~p~~~~~L~~lD~~~~~~~~K~GViYv~~GQ~~e~eIl~N~~gS~~f~eFL~~LG~~V~Lk~ 161 (341)
T 1srq_A 82 MAKLVCEDVNVDRFYPVLYPKASRLIVTFDEHVISNNFKFGVIYQKLGQTSEEELFSTNEESPAFVEFLEFLGQKVKLQD 161 (341)
T ss_dssp HHHHHCTTCCCSCCEECCCTTHHHHHHHHHHTTSCCEEEEEEEEECSSCCSHHHHHCCCSCCHHHHHHHHHHSEEEESTT
T ss_pred HHHHHhhhhcccccccccCccHHHHHHHHhccCCcCceEEEEEEECCCCCCHHHHhcCCCCCHHHHHHHHHhCCcEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCcccCCCCCCCEEEEEeecceEEEEEeccCCCCCCCChhhhhhccccCCCeEEEEEeCCCCCCCCCccccccce
Q psy13052 226 HKGYRGGLDTQFRQTGEQAVYQVFKEREIMFHVSTLLPFTENDPQQLQRKRHIGNDIVAIVFQETNTPFSPDMIASHFLH 305 (533)
Q Consensus 226 ~~gy~GGLD~~~~~tG~~svY~~~~~~EImFHVsTlLP~~~~D~Qql~RKRHIGNDiV~IVf~E~~~~f~p~~I~SqF~h 305 (533)
|+||+||||+++++||++++||+|.++|||||||||||++++|+||++||||||||+|+|||+|++.||+|++|+|||||
T Consensus 162 ~~gy~GGLD~~~~~tG~~s~Y~~~~~~EImFHVsTlmP~~~~D~qq~~kKRHIGND~V~IVf~E~~~~f~p~~I~S~Fn~ 241 (341)
T 1srq_A 162 FKGFRGGLDVTHGQTGTESVYCNFRNKEIMFHVSTKLPYTEGDAQQLQRKRHIGNDIVAVVFQDENTPFVPDMIASNFLH 241 (341)
T ss_dssp CCSCCTTCCSSSCTTCSEEEEEECSSCEEEEEEGGGSCCCTTCTTCHHHHHHHTTCSEEEEEESSCCCCCGGGSCCSSCC
T ss_pred CCCCCcCCCccCCCCCCEEEEEEeCCeEEEEEecCCCCCCcCchhhhhhccccCCCEEEEEEeCCCCCcCCccccccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCCCCcEEEEEEecCCCCCCCCCCCCCceecCChhhHHHHHHHHhhhhHhhhhchhhhhhHHHHHHHHHH
Q psy13052 306 AFIVVQVIDPNTPNTRYKVSVTARDDVPFFGPNFPQPAIFRADSDFKEFLLTKLINAENAAYKAHKFAKLELRTRSSLLH 385 (533)
Q Consensus 306 v~IVV~p~~~~~~~~~YrV~V~~r~~Vp~FGP~lp~~~Vf~k~~~f~~fLl~KlINae~a~~~s~~Fa~~~~RtR~~lL~ 385 (533)
|+|||+|..++..+++|+|+|.+|++||+|||++|+++||+++++|++|||+||||||+||++|++|+++++|||+++|+
T Consensus 242 v~IVV~p~~~~~~~~~yrV~v~~k~~vp~fgP~lp~~~v~~k~~~~~~fll~klINae~a~~~s~~f~~~~~RtR~~ll~ 321 (341)
T 1srq_A 242 AYVVVQAEGGGPDGPLYKVSVTARDDVPFFGPPLPDPAVFRKGPEFQEFLLTKLINAEYACYKAEKFAKLEERTRAALLE 321 (341)
T ss_dssp EEEEEEEECC----CEEEEEEEECTTSCCCSSCCCTTCEEESSHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCCceEEEEEEecCCCCCCCCCCCCCceecCcHHHHHHHHHHHHHHHHHhhcCccccchHHHHHHHHHH
Confidence 99999999887788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccCCCC
Q psy13052 386 SLCEELKEKTREFLGGEG 403 (533)
Q Consensus 386 ~l~~~~~~~~~~~~g~~~ 403 (533)
+|+++|++++++|||+++
T Consensus 322 ~i~~~~~~~~~~~~~~~~ 339 (341)
T 1srq_A 322 TLYEELHIHSQSMMGLGG 339 (341)
T ss_dssp HHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHhhCCCC
Confidence 999999999999999864
No 2
>1srq_A RAP1GAP, GTPase-activating protein 1; mixed alpha-beta, signaling protein; 2.90A {Homo sapiens} SCOP: e.55.1.1 PDB: 3brw_A*
Probab=98.99 E-value=1.4e-10 Score=120.24 Aligned_cols=73 Identities=36% Similarity=0.616 Sum_probs=66.3
Q ss_pred CCCCccccceeeeEEEecCCCceeEeeeeeeEecccceeehhhhcccCccccccCCCCCCCCh--hHHHhhhccc
Q psy13052 416 GTGTRFIDTEHSNFVGVDNELGPVLLSTKTELVGNQSHTRLLLRLKTGTVHELLPPNCANASP--QTMARLRTRS 488 (533)
Q Consensus 416 ~~~~~Fl~~~k~~f~g~d~~lg~l~lS~k~e~v~~qe~lRiiLR~r~~t~~~~ip~~~~~~~p--~~~akl~~~~ 488 (533)
-|+.+|++++|.||+|.|.++|++++|+|.|...+|+++|+|||++++|+|++||++|..+.| .+|||++|..
T Consensus 15 ~Yr~~F~gk~H~n~~g~d~~lGpvilSi~~e~~~~~~~~r~ilRt~~gt~~~~ip~~~~~~~p~~~~~~k~~~~~ 89 (341)
T 1srq_A 15 IYRKHFLGKEHFNYYSLDTALGHLVFSLKYDVIGDQEHLRLLLRTKCRTYHDVIPISCLTEFPNVVQMAKLVCED 89 (341)
T ss_dssp HHHHHTTTSSCEEEEEEETTTEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECCCC--CCCHHHHHHHHCTT
T ss_pred HHHhhCCCCceeeEEEEcCCCCcEEEEEEEeccCCceeEEEEEEcCCccEEEEEEccccccCCCHHHHHHHHhhh
Confidence 478899999999999999999999999999999999999999999999999999999976655 4899999853
No 3
>4g5s_E PINS homolog, G-protein-signaling modulator 2; galpha, goloco, galpha signaling, asymmetric cell division, cycle-signaling protein complex; HET: GDP CIT; 3.62A {Mus musculus}
Probab=40.45 E-value=10 Score=24.58 Aligned_cols=10 Identities=50% Similarity=0.714 Sum_probs=9.5
Q ss_pred CCcc-cccccc
Q psy13052 2 QTSR-DESRTS 11 (533)
Q Consensus 2 ~~~~-~~~~~~ 11 (533)
|||| |.|||.
T Consensus 12 q~srlddqrca 22 (26)
T 4g5s_E 12 QGSRLDDQRCA 22 (26)
T ss_dssp SCCCCSSSCBC
T ss_pred cccccccccCC
Confidence 9999 999997
No 4
>3da0_A Cleaved chimeric receptor binding protein from bacteriophages TP901-1 and P2; lactococcal phage P2; 1.65A {Lactococcus phage tp901-1}
Probab=10.66 E-value=1.6e+02 Score=26.39 Aligned_cols=59 Identities=24% Similarity=0.557 Sum_probs=39.8
Q ss_pred hhhhccccCCCeEEEEEeCC------C---------CCCCCCccccccceEEEEEEecCCCCCCCcEEEEEEecCCCCCC
Q psy13052 271 QLQRKRHIGNDIVAIVFQET------N---------TPFSPDMIASHFLHAFIVVQVIDPNTPNTRYKVSVTARDDVPFF 335 (533)
Q Consensus 271 ql~RKRHIGNDiV~IVf~E~------~---------~~f~p~~I~SqF~hv~IVV~p~~~~~~~~~YrV~V~~r~~Vp~F 335 (533)
|++|| |||+|-+=|.-. + .||.|+... .+|.+-.. ....|.|.|-....+-|+
T Consensus 46 ~ltKK---gndlVev~f~G~Vt~i~sg~~m~~~wV~~pfrP~~~~------sLvGH~ag---~~nSFHIDi~p~Gs~tWW 113 (136)
T 3da0_A 46 QLTKK---NNDLVIVRFFGSVSNIQKGWNMSGTWVDRPFRPAAVQ------SLVGHFAG---RDTSFHIDINPNGSITWW 113 (136)
T ss_dssp EEEEE---TTTEEEEEEEEEECSBCTTCBCSSCCCCGGGCCSSCE------EEEEEETT---SSCEEEEEECTTSCEEEC
T ss_pred EEEec---CCcEEEEEEEeEEEEEecCceeccceecCCcCccceE------EEEEEEcC---CCceeEEEeCCCceEEEe
Confidence 45665 788888856532 1 267776443 36766543 245699999888888999
Q ss_pred CCCCCC
Q psy13052 336 GPNFPQ 341 (533)
Q Consensus 336 GP~lp~ 341 (533)
||.+..
T Consensus 114 G~~~~~ 119 (136)
T 3da0_A 114 GANIDK 119 (136)
T ss_dssp SCCBCS
T ss_pred cCccCC
Confidence 998844
No 5
>1k2d_P MBP peptide, myelin basic protein peptide with 8 residue linke; MHC class II, I-AU, H-2U, autoimmune disease; HET: NDG NAG; 2.20A {Mus musculus}
Probab=9.66 E-value=1e+02 Score=19.87 Aligned_cols=11 Identities=36% Similarity=0.607 Sum_probs=7.5
Q ss_pred cccCCCCCCCC
Q psy13052 513 TRHGDTSNGSG 523 (533)
Q Consensus 513 ~~~~~~~~~~~ 523 (533)
-|||+|||.|.
T Consensus 13 qrhg~gsgsgs 23 (26)
T 1k2d_P 13 QRHGTGSGSGS 23 (26)
T ss_pred ccccCCCCcCc
Confidence 47888776554
No 6
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A*
Probab=9.34 E-value=2.8e+02 Score=27.60 Aligned_cols=42 Identities=17% Similarity=0.327 Sum_probs=28.9
Q ss_pred CCeEEEEEeCCCC----CCCCCccccccceEE-EEEEecCCCCCCCcEEEEEE
Q psy13052 280 NDIVAIVFQETNT----PFSPDMIASHFLHAF-IVVQVIDPNTPNTRYKVSVT 327 (533)
Q Consensus 280 NDiV~IVf~E~~~----~f~p~~I~SqF~hv~-IVV~p~~~~~~~~~YrV~V~ 327 (533)
+..|++||.-.+. .-.|.+-.-+.+|++ .||+|. ..|.|.|-
T Consensus 132 ~~kvHfI~~~k~~~h~~~~~~~~~~D~~tHLYTLIi~pd------ntyeI~ID 178 (265)
T 3pow_A 132 TKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPD------NTYEVKID 178 (265)
T ss_dssp CEEEEEEEEETTEEEECSSCCBCCCSSSEEEEEEEECTT------SEEEEEET
T ss_pred CCEEEEEEEcCCccccccCCCCCCCCCCCceEEEEEcCC------CeEEEEEC
Confidence 4578888876552 223455567788998 888873 45888774
No 7
>3dgp_B RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae} SCOP: d.295.1.0 PDB: 3dom_B
Probab=8.75 E-value=90 Score=25.15 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=22.7
Q ss_pred ccchhhhhhhHHhhHhhhhcccCCCccc
Q psy13052 486 TRSSLLHSLCEELKEKTREFLGGEGEDT 513 (533)
Q Consensus 486 ~~~~~~~~lc~~~~~~~~~~~~~~~~~~ 513 (533)
||+|+-+.+. .++++..+|.=.|+-+|
T Consensus 11 CDpa~Kq~il-~lde~~~~FIIedLDdt 37 (71)
T 3dgp_B 11 CDPSIKALIL-QIDAKMSDIVLEELDDT 37 (71)
T ss_dssp CCHHHHHHHH-HHHHHHCSSEEEEEETT
T ss_pred cCHHHHHHHH-HHcCCCCCEEEEEcCCc
Confidence 9999988888 88888788998887654
No 8
>1cf4_B Protein (activated P21CDC42HS kinase); CDC42/ACK GTPase complex, G protein, transferase; HET: GNP; NMR {Homo sapiens}
Probab=8.13 E-value=2e+02 Score=21.14 Aligned_cols=28 Identities=32% Similarity=0.340 Sum_probs=18.8
Q ss_pred ccCCCcccccCCCCCCCCccc-eeeeecC
Q psy13052 506 LGGEGEDTRHGDTSNGSGTGT-RFIDTVY 533 (533)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 533 (533)
|....-+|-||++-.|-+-|. -.||.+|
T Consensus 13 l~~SFiHtgHGd~~~~~sWG~P~~idd~y 41 (44)
T 1cf4_B 13 LQNSFIHTGHGDSDPRHCWGFPDRIDELY 41 (44)
T ss_dssp CSSCCCCCCCCCCCCSSCCCSSCCCCTTT
T ss_pred ccccceecCCCCCCcccccCChhHHhHHh
Confidence 445566788998776544443 6788887
No 9
>1toh_A Tyroh, tyrosine hydroxylase; neurotransmitter biosynthesis, non-heme iron, P substrate; 2.30A {Rattus norvegicus} SCOP: d.178.1.1 PDB: 2toh_A* 2xsn_A
Probab=7.93 E-value=1.6e+02 Score=30.39 Aligned_cols=28 Identities=18% Similarity=0.269 Sum_probs=24.2
Q ss_pred hhhchhhhhhHHHHHHHHHHHHHHHHHh
Q psy13052 366 AYKAHKFAKLELRTRSSLLHSLCEELKE 393 (533)
Q Consensus 366 ~~~s~~Fa~~~~RtR~~lL~~l~~~~~~ 393 (533)
.-..|.|....+|.|++.|.+|..+|+.
T Consensus 34 ~~dHpgf~D~~Yr~RR~~~a~~a~~y~~ 61 (343)
T 1toh_A 34 DLDHPGFSDQVYRQRRKLIAEIAFQYKH 61 (343)
T ss_dssp CTTSTTTTCHHHHHHHHHHHHHHHHCCT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCcC
Confidence 3467999999999999999999988864
No 10
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Probab=7.92 E-value=2e+02 Score=29.13 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=19.8
Q ss_pred HHHHcCCCCCceEecCCCCceeee
Q psy13052 25 EETLRGSLPYPMIVTPPSGGYWLD 48 (533)
Q Consensus 25 ~e~l~~~~p~p~i~~p~~~gywie 48 (533)
-..|+..+|-|++-.|..||||+=
T Consensus 43 ~~~lr~~~~~~~~~~~~~gg~W~v 66 (417)
T 4dxy_A 43 WKKVQHPGIPDLIWTPFTGGHWIA 66 (417)
T ss_dssp HHHHSCTTCCSEEEESSTTSEEEE
T ss_pred HHHHHhhCCCCEEecCCCCCEEEE
Confidence 355788888799999999999983
Done!