RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13052
(533 letters)
>gnl|CDD|216901 pfam02145, Rap_GAP, Rap/ran-GAP.
Length = 187
Score = 277 bits (712), Expect = 1e-91
Identities = 95/189 (50%), Positives = 126/189 (66%), Gaps = 3/189 (1%)
Query: 200 LFANKHTSPAFDQFLNLLGQRILLKDHKGYRGGLDTQFRQTGEQAVYQVFKEREIMFHVS 259
+ +N SPAFD FL+ LG ++ LK HKGYRGGLDT+ TGE ++Y ++ EIMFHVS
Sbjct: 1 ILSNNEGSPAFDDFLSSLGDKVRLKGHKGYRGGLDTKNDSTGEYSIYWRDRDTEIMFHVS 60
Query: 260 TLLPFTENDPQQLQRKRHIGNDIVAIVFQETNTPFSPDMIASHFLHAFIVVQVI-DPNTP 318
T++P +NDPQQL++KRHIGNDIV I+F E+ PF+P+ I S F H FIV+ + + ++
Sbjct: 61 TMMPTNDNDPQQLEKKRHIGNDIVNIIFNESGLPFNPNTIKSQFNHVFIVIYPLKNDDSK 120
Query: 319 NTRYKVSVTARDDVPFFGPNFPQPAIFRADSDFKEFLLTKLINAENAAYKAHKFAKLELR 378
+T YKVSV +D VP FGP P+ IF +F+ TK INAE AA + FA R
Sbjct: 121 STLYKVSVYRKDGVPEFGPLLPEKIIFE--KSLPDFVRTKAINAERAARSSPSFASKWER 178
Query: 379 TRSSLLHSL 387
TR+ LL L
Sbjct: 179 TRARLLKDL 187
>gnl|CDD|217599 pfam03524, CagX, Conjugal transfer protein. This family includes
type IV secretion system CagX conjugation protein. Other
members of this family are involved in conjugal transfer
to plant cells of T-DNA.
Length = 215
Score = 34.1 bits (79), Expect = 0.094
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 14/80 (17%)
Query: 311 QVIDPNTPNTRYKVS-------VTARDDVPF----FGPNFPQPAIFRADSDFKEFLLTKL 359
+ +DP N Y VS V DD F F PN PA+F D D KE L+
Sbjct: 126 RGLDPGALNFNYSVSGSASIKPVRVFDDGRFTYFRFPPNAELPALFVVDPDGKESLVNYR 185
Query: 360 INAENAAYKAHK-FAKLELR 378
+ E + + LR
Sbjct: 186 V--EGDYVVVDRVARRAVLR 203
>gnl|CDD|132874 cd06911, VirB9_CagX_TrbG, VirB9/CagX/TrbG, a component of the type
IV secretion system. VirB9 is a component of the type
IV secretion system, which is employed by pathogenic
bacteria to export virulence proteins directly from the
bacterial cytoplasm into the host cell. Unlike the more
common type III secretion system, type IV systems
evolved from the conjugative apparatus, which is used to
transfer DNA between cells. VirB9 was initially
identified as an essential virulence gene on the
Agrobacterium tumefaciens Ti plasmid. In the pilin-like
conjugative structure, VirB9 appears to form a
stabilizing complex in the outer membrane, by
interacting with the lipoprotein VirB7. The heterodimer
has been shown to stabilize other components of the type
IV system. This alignment model spans the C-terminal
domain of VirB9. CagX is a component of the Helicobacter
pylori cag PAI-encoded type IV secretion system. Some
other members of this family are involved in conjugal
transfer to T-DNA of plant cells.
Length = 86
Score = 31.4 bits (72), Expect = 0.21
Identities = 25/76 (32%), Positives = 29/76 (38%), Gaps = 14/76 (18%)
Query: 315 PNTPNTRYKVSVTAR-------DDVPF----FGPNFPQPAIFRADSDFKEFLLTKLINAE 363
P N Y +S +A DD F F PN PAIF D D KE L+ + E
Sbjct: 1 PGPLNFDYSISGSAAIKPVRVFDDGRFTYFQFPPNAELPAIFVVDPDGKESLVNYRV--E 58
Query: 364 NAAYKAHK-FAKLELR 378
KL LR
Sbjct: 59 GNYIVVDGVAPKLVLR 74
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 30.2 bits (69), Expect = 2.9
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 251 EREIMFHVSTLLPFTENDPQQLQRKRHIGNDIVAIVFQETNTPFSPDM 298
E++ LL +E + ++L+ KR +A++FQ+ T +P M
Sbjct: 67 SGEVILDGRDLLGLSEREMRKLRGKR------IAMIFQDPMTSLNPVM 108
>gnl|CDD|113222 pfam04443, LuxE, Acyl-protein synthetase, LuxE. LuxE is an
acyl-protein synthetase found in bioluminescent
bacteria. LuxE catalyzes the formation of an
acyl-protein thioester from a fatty acid and a protein.
This is the second step in the bioluminescent fatty acid
reduction system, which converts tetradecanoic acid to
the aldehyde substrate of the luciferase-catalyzed
bioluminescence reaction A conserved cysteine found at
position 364 in Photobacterium phosphoreum LuxE is
thought to be acylated during the transfer of the acyl
group from the synthetase subunit to the reductase. The
carboxyl terminal of the synthetase is though to act as
a flexible arm to transfer acyl groups between the sites
of activation and reduction. This family also includes
Vibrio cholerae RBFN protein, which is involved in the
biosynthesis of the O-antigen component
3-deoxy-L-glycero-tetronic acid.
Length = 371
Score = 29.8 bits (67), Expect = 3.9
Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 14/137 (10%)
Query: 275 KRHIGNDIVAIVFQETNTPFSPDMIASHFLHAFIVVQVIDPNTPNTRYKVSVTARDDVPF 334
K I D ++I + F + F H +V + P+ N ++ + +
Sbjct: 108 KSTIARDRLSIERLLGSVNFGMKYVGGWFDHQMELV-NLGPDRFNA---NNIWFKYVMSL 163
Query: 335 FGPNFPQPAIFRADS-DFKEFLLT-KLINAENAAYKAHKFAKLELRTRSSLLHSLCEELK 392
+P DS DF++ + K I L L ++ LC LK
Sbjct: 164 VELLYPTTFTVDEDSIDFEQTFVELKRIKNSGK--------DLCLIGPPYFIYLLCHYLK 215
Query: 393 EKTREFLGGEGEDTRHG 409
+K F G+ G
Sbjct: 216 DKGISFNLGKRLQIITG 232
>gnl|CDD|220154 pfam09250, Prim-Pol, Bifunctional DNA primase/polymerase,
N-terminal. Members of this family adopt a structure
consisting of a core of antiparallel beta sheets. They
are found in various bacterial hypothetical proteins,
and have been shown to harbour both primase and
polymerase activities.
Length = 160
Score = 28.9 bits (65), Expect = 4.1
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 15 HDKNNSKELLEETLRGSLPYPMIVTPPSGGYWL 47
+ ++ LE G LP ++V PSGG L
Sbjct: 66 KEGGDALAALEAAG-GPLPPTLVVRTPSGGRHL 97
>gnl|CDD|143606 cd07582, nitrilase_4, Uncharacterized subgroup of the nitrilase
superfamily (putative class 13 nitrilases). The
nitrilase superfamily is comprised of nitrile- or
amide-hydrolyzing enzymes and amide-condensing enzymes,
which depend on a Glu-Lys-Cys catalytic triad. This
superfamily has been classified in the literature based
on global and structure based sequence analysis into
thirteen different enzyme classes (referred to as 1-13).
Class 13 represents proteins that at the time were
difficult to place in a distinct similarity group; this
subgroup represents either a new class or one that was
included previously in class 13. Members of this
superfamily generally form homomeric complexes, the
basic building block of which is a homodimer.
Length = 294
Score = 29.2 bits (66), Expect = 5.4
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 253 EIMFHVSTLLPFTENDPQQLQRKRH 277
E++ S+ +P E DP ++ +
Sbjct: 191 EVLLRSSSEVPSVELDPWEIANRAR 215
>gnl|CDD|215110 PLN00412, PLN00412, NADP-dependent glyceraldehyde-3-phosphate
dehydrogenase; Provisional.
Length = 496
Score = 29.3 bits (66), Expect = 5.4
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 26/85 (30%)
Query: 309 VVQVIDPNTPNTRYKVSVTARDDVPFFGPNFPQPAIFRADSDFKEFLLTKLINAENAAYK 368
V + +P+T T+YKV +++V K + + AA K
Sbjct: 32 SVAITNPSTRKTQYKVQACTQEEV------------------------NKAMESAKAAQK 67
Query: 369 AHKFAKLELRTRSSLLHSLCEELKE 393
A +AK L R+ LLH LKE
Sbjct: 68 A--WAKTPLWKRAELLHKAAAILKE 90
>gnl|CDD|177475 PHA02693, PHA02693, hypothetical protein; Provisional.
Length = 710
Score = 29.2 bits (65), Expect = 5.9
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 143 PQTMARLVNEQLTCSSLTPVLCPQASSLIAAYDEHVLVSQFKFGVLYQ 190
P + L + + C + P +C +L+AA D VL G++Y+
Sbjct: 69 PDLITALKSTRTICKKMMPAVCFHKRALLAADDMEVLRVLLSAGLVYE 116
>gnl|CDD|183285 PRK11712, PRK11712, ribonuclease G; Provisional.
Length = 489
Score = 28.8 bits (65), Expect = 9.2
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 481 MARLRTRSSLLHSLCEE 497
M R RTR SL H LC E
Sbjct: 388 MTRKRTRESLEHVLCGE 404
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.391
Gapped
Lambda K H
0.267 0.0674 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,790,643
Number of extensions: 2594862
Number of successful extensions: 2019
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2017
Number of HSP's successfully gapped: 16
Length of query: 533
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 432
Effective length of database: 6,457,848
Effective search space: 2789790336
Effective search space used: 2789790336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.4 bits)