RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13052
         (533 letters)



>d1srqa_ e.55.1.1 (A:) Rap1 GTPase-activating protein 1, Rap1GAP
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 336

 Score =  422 bits (1086), Expect = e-146
 Identities = 188/336 (55%), Positives = 241/336 (71%), Gaps = 2/336 (0%)

Query: 70  RSKIECDDTAKCYRRFFLGREHSNFVGVDNELGPVLLSTKTELVGNQSHTRLLLRLKTGT 129
           + K+EC+ TA+ YR+ FLG+EH N+  +D  LG ++ S K +++G+Q H RLLLR K  T
Sbjct: 1   KVKLECNPTARIYRKHFLGKEHFNYYSLDTALGHLVFSLKYDVIGDQEHLRLLLRTKCRT 60

Query: 130 VHELLPPNC--ANASPQTMARLVNEQLTCSSLTPVLCPQASSLIAAYDEHVLVSQFKFGV 187
            H+++P +C     +   MA+LV E +      PVL P+AS LI  +DEHV+ + FKFGV
Sbjct: 61  YHDVIPISCLTEFPNVVQMAKLVCEDVNVDRFYPVLYPKASRLIVTFDEHVISNNFKFGV 120

Query: 188 LYQRHGQITEEELFANKHTSPAFDQFLNLLGQRILLKDHKGYRGGLDTQFRQTGEQAVYQ 247
           +YQ+ GQ +EEELF+    SPAF +FL  LGQ++ L+D KG+RGGLD    QTG ++VY 
Sbjct: 121 IYQKLGQTSEEELFSTNEESPAFVEFLEFLGQKVKLQDFKGFRGGLDVTHGQTGTESVYC 180

Query: 248 VFKEREIMFHVSTLLPFTENDPQQLQRKRHIGNDIVAIVFQETNTPFSPDMIASHFLHAF 307
            F+ +EIMFHVST LP+TE D QQLQRKRHIGNDIVA+VFQ+ NTPF PDMIAS+FLHA+
Sbjct: 181 NFRNKEIMFHVSTKLPYTEGDAQQLQRKRHIGNDIVAVVFQDENTPFVPDMIASNFLHAY 240

Query: 308 IVVQVIDPNTPNTRYKVSVTARDDVPFFGPNFPQPAIFRADSDFKEFLLTKLINAENAAY 367
           +VVQ          YKVSVTARDDVPFFGP  P PA+FR   +F+EFLLTKLINAE A Y
Sbjct: 241 VVVQAEGGGPDGPLYKVSVTARDDVPFFGPPLPDPAVFRKGPEFQEFLLTKLINAEYACY 300

Query: 368 KAHKFAKLELRTRSSLLHSLCEELKEKTREFLGGEG 403
           KA KFAKLE RTR++LL +L EEL   ++  +G  G
Sbjct: 301 KAEKFAKLEERTRAALLETLYEELHIHSQSMMGLGG 336



 Score = 74.9 bits (184), Expect = 2e-15
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 7/81 (8%)

Query: 421 FIDTEHSNFVGVDNELGPVLLSTKTELVGNQSHTRLLLRLKTGTVHELLPPNCANASPQT 480
           F+  EH N+  +D  LG ++ S K +++G+Q H RLLLR K  T H+++P +C    P  
Sbjct: 17  FLGKEHFNYYSLDTALGHLVFSLKYDVIGDQEHLRLLLRTKCRTYHDVIPISCLTEFP-- 74

Query: 481 MARLRTRSSLLHSLCEELKEK 501
                    +   +CE++   
Sbjct: 75  -----NVVQMAKLVCEDVNVD 90



 Score = 34.9 bits (80), Expect = 0.021
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 473 CANASPQTMARLRTRSSLLHSLCEELKEKTREFLGGEG 510
           C  A        RTR++LL +L EEL   ++  +G  G
Sbjct: 299 CYKAEKFAKLEERTRAALLETLYEELHIHSQSMMGLGG 336


>d1t95a1 a.5.8.1 (A:87-161) Hypothetical protein AF0491, middle
           domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 75

 Score = 25.8 bits (57), Expect = 3.9
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 11/54 (20%)

Query: 270 QQLQRKRHIGNDIVAIVFQ-----ETNTPFSPDMIASHFLHAFIVVQVIDPNTP 318
           + L+ KR     I+  + +      TN P  P  I      A +    ID    
Sbjct: 14  EMLEAKR---KQIINFISRNTIDPRTNAPHPPSRIERALEEAKV---HIDIFKS 61


>d3bz6a2 a.4.5.75 (A:97-180) Hypothetical protein PSPTO2686
           {Pseudomonas syringae pv. tomato [TaxId: 323]}
          Length = 84

 Score = 25.4 bits (56), Expect = 6.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)

Query: 478 PQTMARLRTRSSLLH 492
           PQT++ L TRS+ +H
Sbjct: 23  PQTVSELLTRSNRMH 37


>d2bpa2_ b.121.5.1 (2:) Microvirus capsid proteins {Bacteriophage
           phi-X174 [TaxId: 10847]}
          Length = 175

 Score = 26.4 bits (58), Expect = 7.6
 Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 307 FIVVQVIDPNTPNTRYKVSVTARDDVPFFGPNFPQPAIFRADS 349
           F+    +D +       VSV A  D+ F         + R +S
Sbjct: 56  FLHCIQMDTSVNAANQVVSVGA--DIAFDADPKFFACLVRFES 96


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0690    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,891,541
Number of extensions: 86752
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 6
Length of query: 533
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 443
Effective length of database: 1,171,896
Effective search space: 519149928
Effective search space used: 519149928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.0 bits)