BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13053
(242 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F3H|A Chain A, X-Ray Crystal Structure Of The Human Anti-Apoptotic
Protein Survivin
pdb|1F3H|B Chain B, X-Ray Crystal Structure Of The Human Anti-Apoptotic
Protein Survivin
Length = 142
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%)
Query: 133 CTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKLNTV 192
CTPE MA AGF +CF C KEL+GWE DDP EEHK+H C ++ +
Sbjct: 33 CTPERMAEAGFIHCPTENEPDMAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFLSVKKQ 92
Query: 193 EQQWTLEEWIDLQQAMAVKLLGTCAEVRSVEYCYQRNWHKRAVTSVIGL 241
++ TL E++ L + A + + E+ +RA+ + +
Sbjct: 93 FEELTLGEFLKLDRERAKNKIAKETNNKKKEFEETAKKVRRAIEQLAAM 141
>pdb|2RAW|A Chain A, Crystal Structure Of The Borealin-survivin Complex
Length = 145
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%)
Query: 133 CTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKLNTV 192
CTPE MA AGF +CF C KEL+GWE DDP EEHK+H C ++ +
Sbjct: 36 CTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFLSVKKQ 95
Query: 193 EQQWTLEEWIDLQQAMAVKLLGTCAEVRSVEYCYQRNWHKRAVTSVIGL 241
++ TL E++ L + A + + E+ +RA+ + +
Sbjct: 96 FEELTLGEFLKLDRERAKNKIAKETNNKKKEFEETAKKVRRAIEQLAAM 144
>pdb|3UIG|A Chain A, Crystal Structure Of Human Survivin In Complex With T3
Phosphorylated H3(1-15) Peptide
pdb|3UIG|B Chain B, Crystal Structure Of Human Survivin In Complex With T3
Phosphorylated H3(1-15) Peptide
pdb|3UIH|A Chain A, Crystal Structure Of Human Survivin In Complex With
SmacDIABLO(1-15) Peptide
pdb|3UIH|B Chain B, Crystal Structure Of Human Survivin In Complex With
SmacDIABLO(1-15) Peptide
pdb|3UII|A Chain A, Crystal Structure Of Human Survivin In Complex With
H3(1-10) Peptide
pdb|3UII|B Chain B, Crystal Structure Of Human Survivin In Complex With
H3(1-10) Peptide
Length = 143
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%)
Query: 133 CTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKLNTV 192
CTPE MA AGF +CF C KEL+GWE DDP EEHK+H C ++ +
Sbjct: 34 CTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFLSVKKQ 93
Query: 193 EQQWTLEEWIDLQQAMAVKLLGTCAEVRSVEYCYQRNWHKRAVTSVIGL 241
++ TL E++ L + A + + E+ +RA+ + +
Sbjct: 94 FEELTLGEFLKLDRERAKNKIAKETNNKKKEFEETAKKVRRAIEQLAAM 142
>pdb|3UEC|A Chain A, Crystal Structure Of Human Survivin Bound To Histone H3
Phosphorylated On Threonine-3.
pdb|3UED|A Chain A, Crystal Structure Of Human Survivin Bound To Histone H3
Phosphorylated On Threonine-3 (C2 Space Group).
pdb|3UED|C Chain C, Crystal Structure Of Human Survivin Bound To Histone H3
Phosphorylated On Threonine-3 (C2 Space Group).
pdb|3UEF|A Chain A, Crystal Structure Of Human Survivin Bound To Histone H3
(C2 Space Group).
pdb|3UEF|C Chain C, Crystal Structure Of Human Survivin Bound To Histone H3
(C2 Space Group)
Length = 146
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%)
Query: 133 CTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKLNTV 192
CTPE MA AGF +CF C KEL+GWE DDP EEHK+H C ++ +
Sbjct: 37 CTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFLSVKKQ 96
Query: 193 EQQWTLEEWIDLQQAMAVKLLGTCAEVRSVEYCYQRNWHKRAVTSVIGL 241
++ TL E++ L + A + + E+ +RA+ + +
Sbjct: 97 FEELTLGEFLKLDRERAKNKIAKETNNKKKEFEETAKKVRRAIEQLAAM 145
>pdb|1E31|A Chain A, Survivin Dimer H. Sapiens
pdb|1E31|B Chain B, Survivin Dimer H. Sapiens
pdb|2QFA|A Chain A, Crystal Structure Of A Survivin-Borealin-Incenp Core
Complex
pdb|4A0I|A Chain A, Crystal Structure Of Survivin Bound To The N-Terminal Tail
Of Hsgo1
pdb|4A0I|B Chain B, Crystal Structure Of Survivin Bound To The N-Terminal Tail
Of Hsgo1
pdb|4A0J|A Chain A, Crystal Structure Of Survivin Bound To The Phosphorylated
N- Terminal Tail Of Histone H3
pdb|4A0J|B Chain B, Crystal Structure Of Survivin Bound To The Phosphorylated
N- Terminal Tail Of Histone H3
pdb|4A0N|A Chain A, Crystal Structure Of Survivin Bound To The Phosphorylated
N- Terminal Tail Of Histone H3
Length = 142
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%)
Query: 133 CTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKLNTV 192
CTPE MA AGF +CF C KEL+GWE DDP EEHK+H C ++ +
Sbjct: 33 CTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFLSVKKQ 92
Query: 193 EQQWTLEEWIDLQQAMAVKLLGTCAEVRSVEYCYQRNWHKRAVTSVIGL 241
++ TL E++ L + A + + E+ +RA+ + +
Sbjct: 93 FEELTLGEFLKLDRERAKNKIAKETNNKKKEFEETAKKVRRAIEQLAAM 141
>pdb|3UEI|A Chain A, Crystal Structure Of Human Survivin E65a Mutant
pdb|3UEI|B Chain B, Crystal Structure Of Human Survivin E65a Mutant
Length = 146
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%)
Query: 133 CTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKLNTV 192
CTPE MA AGF +CF C KEL GWE DDP EEHK+H C ++ +
Sbjct: 37 CTPERMAEAGFIHCPTENEPDLAQCFFCFKELAGWEPDDDPIEEHKKHSSGCAFLSVKKQ 96
Query: 193 EQQWTLEEWIDLQQAMAVKLLGTCAEVRSVEYCYQRNWHKRAVTSVIGL 241
++ TL E++ L + A + + E+ +RA+ + +
Sbjct: 97 FEELTLGEFLKLDRERAKNKIAKETNNKKKEFEETAKKVRRAIEQLAAM 145
>pdb|2RAX|A Chain A, Crystal Structure Of Borealin (20-78) Bound To Survivin
(1-120)
pdb|2RAX|E Chain E, Crystal Structure Of Borealin (20-78) Bound To Survivin
(1-120)
pdb|2RAX|X Chain X, Crystal Structure Of Borealin (20-78) Bound To Survivin
(1-120)
Length = 123
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 43/77 (55%)
Query: 133 CTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKLNTV 192
CTPE MA AGF +CF C KEL+GWE DDP EEHK+H C ++ +
Sbjct: 36 CTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFLSVKKQ 95
Query: 193 EQQWTLEEWIDLQQAMA 209
++ TL E++ L + A
Sbjct: 96 FEELTLGEFLKLDRERA 112
>pdb|1XOX|A Chain A, Solution Structure Of Human Survivin
pdb|1XOX|B Chain B, Solution Structure Of Human Survivin
Length = 117
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 43/77 (55%)
Query: 133 CTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKLNTV 192
CTPE MA AGF +CF C KEL+GWE DDP EEHK+H C ++ +
Sbjct: 33 CTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFLSVKKQ 92
Query: 193 EQQWTLEEWIDLQQAMA 209
++ TL E++ L + A
Sbjct: 93 FEELTLGEFLKLDRERA 109
>pdb|3UEE|A Chain A, Crystal Structure Of Human Survivin K62a Mutant Bound To
N-Terminal Histone H3
pdb|3UEE|C Chain C, Crystal Structure Of Human Survivin K62a Mutant Bound To
N-Terminal Histone H3
pdb|3UEG|A Chain A, Crystal Structure Of Human Survivin K62a Mutant
pdb|3UEG|B Chain B, Crystal Structure Of Human Survivin K62a Mutant
Length = 146
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%)
Query: 133 CTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKLNTV 192
CTPE MA AGF +CF C EL+GWE DDP EEHK+H C ++ +
Sbjct: 37 CTPERMAEAGFIHCPTENEPDLAQCFFCFAELEGWEPDDDPIEEHKKHSSGCAFLSVKKQ 96
Query: 193 EQQWTLEEWIDLQQAMAVKLLGTCAEVRSVEYCYQRNWHKRAVTSVIGL 241
++ TL E++ L + A + + E+ +RA+ + +
Sbjct: 97 FEELTLGEFLKLDRERAKNKIAKETNNKKKEFEETAKKVRRAIEQLAAM 145
>pdb|3UEH|A Chain A, Crystal Structure Of Human Survivin H80a Mutant
pdb|3UEH|B Chain B, Crystal Structure Of Human Survivin H80a Mutant
Length = 146
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%)
Query: 133 CTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKLNTV 192
CTPE MA AGF +CF C KEL+GWE DDP EEHK+ C ++ +
Sbjct: 37 CTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKASSGCAFLSVKKQ 96
Query: 193 EQQWTLEEWIDLQQAMAVKLLGTCAEVRSVEYCYQRNWHKRAVTSVIGL 241
++ TL E++ L + A + + E+ +RA+ + +
Sbjct: 97 FEELTLGEFLKLDRERAKNKIAKETNNKKKEFEETAKKVRRAIEQLAAM 145
>pdb|1M4M|A Chain A, Mouse Survivin
Length = 140
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 133 CTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKLNTV 192
CTPE MA AGF +CF C KEL+GWE D+P EEH++H C ++ +
Sbjct: 33 CTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDNPIEEHRKHSPGCAFLTVKKQ 92
Query: 193 EQQWTLEEWIDLQQAMA 209
++ T+ E++ L + A
Sbjct: 93 MEELTVSEFLKLDRQRA 109
>pdb|3UIJ|A Chain A, Crystal Structure Of Human Survivin K62yH80W MUTANT IN
COMPLEX WITH SmacDIABLO(1-15) Peptide
pdb|3UIJ|B Chain B, Crystal Structure Of Human Survivin K62yH80W MUTANT IN
COMPLEX WITH SmacDIABLO(1-15) Peptide
pdb|3UIK|A Chain A, Crystal Structure Of Human Survivin Mutant K62yH80W IN
COMPLEX WITH H3(1-10) Peptide
pdb|3UIK|B Chain B, Crystal Structure Of Human Survivin Mutant K62yH80W IN
COMPLEX WITH H3(1-10) Peptide
Length = 143
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%)
Query: 133 CTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKLNTV 192
CTPE MA AGF +CF C EL+GWE DDP EEHK+ C ++ +
Sbjct: 34 CTPERMAEAGFIHCPTENEPDLAQCFFCFYELEGWEPDDDPIEEHKKWSSGCAFLSVKKQ 93
Query: 193 EQQWTLEEWIDLQQAMAVKLLGTCAEVRSVEYCYQRNWHKRAVTSVIGL 241
++ TL E++ L + A + + E+ +RA+ + +
Sbjct: 94 FEELTLGEFLKLDRERAKNKIAKETNNKKKEFEETAKKVRRAIEQLAAM 142
>pdb|3MUP|A Chain A, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac037
pdb|3MUP|B Chain B, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac037
pdb|3MUP|C Chain C, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac037
pdb|3MUP|D Chain D, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac037
pdb|3OZ1|A Chain A, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac066
pdb|3OZ1|B Chain B, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac066
pdb|3OZ1|C Chain C, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac066
pdb|3OZ1|D Chain D, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac066
pdb|4EB9|A Chain A, Ciap1-Bir3 In Complex With A Divalent Smac Mimetic
pdb|4EB9|B Chain B, Ciap1-Bir3 In Complex With A Divalent Smac Mimetic
pdb|4EB9|C Chain C, Ciap1-Bir3 In Complex With A Divalent Smac Mimetic
pdb|4EB9|D Chain D, Ciap1-Bir3 In Complex With A Divalent Smac Mimetic
Length = 122
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 135 PENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI 187
PE +A+AGFY + RND VKCFCC L WES DDPW EH + C ++
Sbjct: 38 PEQLASAGFYYVG--RND-DVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFL 87
>pdb|4HY4|A Chain A, Crystal Structure Of Ciap1 Bir3 Bound To T3170284
pdb|4HY4|B Chain B, Crystal Structure Of Ciap1 Bir3 Bound To T3170284
pdb|4HY5|A Chain A, Crystal Structure Of Ciap1 Bir3 Bound To T3256336
pdb|4HY5|B Chain B, Crystal Structure Of Ciap1 Bir3 Bound To T3256336
Length = 115
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 135 PENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI 187
PE +A+AGFY + RND VKCFCC L WES DDPW EH + C ++
Sbjct: 50 PEQLASAGFYYVG--RND-DVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFL 99
>pdb|2UVL|A Chain A, Human Bir3 Domain Of Baculoviral Inhibitor Of Apoptosis
Repeat-Containing 3 (Birc3)
pdb|2UVL|B Chain B, Human Bir3 Domain Of Baculoviral Inhibitor Of Apoptosis
Repeat-Containing 3 (Birc3)
Length = 96
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 134 TPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI 187
PE +A+AGFY + N VKCFCC L WES DDPW +H + C Y+
Sbjct: 31 NPEQLASAGFYYVG---NSDDVKCFCCDGGLRCWESGDDPWVQHAKWFPRCEYL 81
>pdb|3D9T|A Chain A, Ciap1-Bir3 In Complex With N-Terminal Peptide From
Caspase- 9 (Atpfqe)
pdb|3D9T|B Chain B, Ciap1-Bir3 In Complex With N-Terminal Peptide From
Caspase- 9 (Atpfqe)
pdb|3D9U|A Chain A, The Bir3 Domain Of Ciap1 In Complex With The N Terminal
Peptide From SmacDIABLO (AVPIAQ)
Length = 97
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 135 PENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI 187
PE +A+AGFY + RND VKCFCC L WES DDPW EH + C ++
Sbjct: 32 PEQLASAGFYYVG--RND-DVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFL 81
>pdb|1QBH|A Chain A, Solution Structure Of A Baculoviral Inhibitor Of Apoptosis
(Iap) Repeat
Length = 101
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 135 PENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI 187
PE +A+AGFY + RND VKCFCC L WES DDPW EH + C ++
Sbjct: 25 PEQLASAGFYYVG--RND-DVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFL 74
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 135 PENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI 187
PE +A+AGFY + RND VKCF C L WES DDPW EH + C ++
Sbjct: 24 PEQLASAGFYYVG--RND-DVKCFSCDGGLRCWESGDDPWVEHAKWFPRCEFL 73
>pdb|3UW4|A Chain A, Crystal Structure Of Ciap1 Bir3 Bound To Gdc0152
Length = 92
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 135 PENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI 187
PE +A AGFY + RND VKCF C L WES DDPW EH + C ++
Sbjct: 25 PEQLAAAGFYYVG--RND-DVKCFSCDGGLRCWESGDDPWVEHAKWFPGCEFL 74
>pdb|1I51|E Chain E, Crystal Structure Of Caspase-7 Complexed With Xiap
pdb|1I51|F Chain F, Crystal Structure Of Caspase-7 Complexed With Xiap
Length = 117
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 134 TPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI 187
TP +A+AG Y V+CFCC +L WE D W EH+RH +C ++
Sbjct: 57 TPRELASAGLYYTGI---GDQVQCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFV 107
>pdb|1I4O|C Chain C, Crystal Structure Of The XiapCASPASE-7 Complex
pdb|1I4O|D Chain D, Crystal Structure Of The XiapCASPASE-7 Complex
Length = 141
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 134 TPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI 187
TP +A+AG Y V+CFCC +L WE D W EH+RH +C ++
Sbjct: 61 TPRELASAGLYYTGI---GDQVQCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFV 111
>pdb|1KMC|C Chain C, Crystal Structure Of The Caspase-7 XIAP-Bir2 Complex
pdb|1KMC|D Chain D, Crystal Structure Of The Caspase-7 XIAP-Bir2 Complex
Length = 119
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 134 TPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI 187
TP +A+AG Y V+CFCC +L WE D W EH+RH +C ++
Sbjct: 57 TPRELASAGLYYTGI---GDQVQCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFV 107
>pdb|1XB0|A Chain A, Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB0|B Chain B, Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB0|C Chain C, Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB0|D Chain D, Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB0|E Chain E, Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB0|F Chain F, Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB1|A Chain A, The Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB1|B Chain B, The Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB1|C Chain C, The Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB1|D Chain D, The Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB1|E Chain E, The Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB1|F Chain F, The Structure Of The Bir Domain Of Iap-Like Protein 2
Length = 108
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 136 ENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI 187
E +A AGFY+I + + V+CF C L W+ +DPWE+H + C Y+
Sbjct: 34 EQLARAGFYAIGQ---EDKVQCFHCGGGLANWKPKEDPWEQHAKWYPGCKYL 82
>pdb|1I3O|E Chain E, Crystal Structure Of The Complex Of Xiap-Bir2 And Caspase
3
pdb|1I3O|F Chain F, Crystal Structure Of The Complex Of Xiap-Bir2 And Caspase
3
Length = 121
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 134 TPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI 187
TP +A+AG Y V+CF C +L WE D W EH+RH +C ++
Sbjct: 61 TPRELASAGLYYTGI---GDQVQCFACGGKLKNWEPGDRAWSEHRRHFPNCFFV 111
>pdb|1C9Q|A Chain A, Average Nmr Solution Structure Of The Bir-2 Domain Of Xiap
Length = 117
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 134 TPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI 187
TP +A+AG Y V+CF C +L WE D W EH+RH +C ++
Sbjct: 57 TPRELASAGLYYTGI---GDQVQCFACGGKLKNWEPGDRAWSEHRRHFPNCFFV 107
>pdb|2VSL|A Chain A, Crystal Structure Of Xiap Bir3 With A Bivalent Smac
Mimetic
Length = 96
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 136 ENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI 187
E +A AGFY++ + VKCF C L W+ +DPWE+H + C Y+
Sbjct: 33 EQLARAGFYALGE---GDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYL 81
>pdb|3CLX|D Chain D, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac005
pdb|3CLX|A Chain A, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac005
pdb|3CLX|B Chain B, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac005
pdb|3CLX|C Chain C, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac005
pdb|3CM2|D Chain D, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|A Chain A, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|B Chain B, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|C Chain C, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|E Chain E, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|F Chain F, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|G Chain G, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|H Chain H, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|I Chain I, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|J Chain J, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM7|C Chain C, Crystal Structure Of Xiap-Bir3 Domain In Complex With
Smac- Mimetic Compuond, Smac005
pdb|3CM7|A Chain A, Crystal Structure Of Xiap-Bir3 Domain In Complex With
Smac- Mimetic Compuond, Smac005
pdb|3CM7|B Chain B, Crystal Structure Of Xiap-Bir3 Domain In Complex With
Smac- Mimetic Compuond, Smac005
pdb|3CM7|D Chain D, Crystal Structure Of Xiap-Bir3 Domain In Complex With
Smac- Mimetic Compuond, Smac005
Length = 130
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 136 ENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI 187
E +A AGFY++ + VKCF C L W+ +DPWE+H + C Y+
Sbjct: 56 EQLARAGFYALGE---GDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYL 104
>pdb|3HL5|A Chain A, Crystal Structure Of Xiap Bir3 With Cs3
pdb|3HL5|B Chain B, Crystal Structure Of Xiap Bir3 With Cs3
Length = 95
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 136 ENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI 187
E +A AGFY++ + VKCF C L W+ +DPWE+H + C Y+
Sbjct: 31 EQLARAGFYALGE---GDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYL 79
>pdb|1NW9|A Chain A, Structure Of Caspase-9 In An Inhibitory Complex With Xiap-
Bir3
Length = 98
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 136 ENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI 187
E +A AGFY++ + VKCF C L W+ +DPWE+H + C Y+
Sbjct: 30 EQLARAGFYALGE---GDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYL 78
>pdb|2OPY|A Chain A, Smac Mimic Bound To Bir3-Xiap
Length = 106
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 136 ENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI 187
E +A AGFY++ + VKCF C L W+ +DPWE+H + C Y+
Sbjct: 34 EQLARAGFYALGE---GDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYL 82
>pdb|2OPZ|A Chain A, Avpf Bound To Bir3-Xiap
pdb|2OPZ|B Chain B, Avpf Bound To Bir3-Xiap
pdb|2OPZ|C Chain C, Avpf Bound To Bir3-Xiap
pdb|2OPZ|D Chain D, Avpf Bound To Bir3-Xiap
Length = 109
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 136 ENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI 187
E +A AGFY++ + VKCF C L W+ +DPWE+H + C Y+
Sbjct: 34 EQLARAGFYALGE---GDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYL 82
>pdb|4HY0|A Chain A, Crystal Structure Of Xiap Bir3 With T3256336
pdb|4HY0|B Chain B, Crystal Structure Of Xiap Bir3 With T3256336
pdb|4HY0|C Chain C, Crystal Structure Of Xiap Bir3 With T3256336
pdb|4HY0|D Chain D, Crystal Structure Of Xiap Bir3 With T3256336
pdb|4HY0|E Chain E, Crystal Structure Of Xiap Bir3 With T3256336
pdb|4HY0|F Chain F, Crystal Structure Of Xiap Bir3 With T3256336
pdb|4HY0|G Chain G, Crystal Structure Of Xiap Bir3 With T3256336
pdb|4HY0|H Chain H, Crystal Structure Of Xiap Bir3 With T3256336
Length = 125
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 136 ENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI 187
E +A AGFY++ + VKCF C L W+ +DPWE+H + C Y+
Sbjct: 50 EQLARAGFYALGE---GDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYL 98
>pdb|1F9X|A Chain A, Average Nmr Solution Structure Of The Bir-3 Domain Of Xiap
Length = 120
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 136 ENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI-------K 188
E +A AGFY++ + VKCF C L W+ +DPWE+H + C Y+
Sbjct: 46 EQLARAGFYALGE---GDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQEY 102
Query: 189 LNTVEQQWTLEE 200
+N + +LEE
Sbjct: 103 INNIHLTHSLEE 114
>pdb|3EYL|A Chain A, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound
pdb|3EYL|B Chain B, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound
pdb|3G76|A Chain A, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|3G76|B Chain B, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|3G76|C Chain C, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|3G76|D Chain D, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|3G76|E Chain E, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|3G76|F Chain F, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|3G76|G Chain G, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|3G76|H Chain H, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|4EC4|A Chain A, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|B Chain B, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|C Chain C, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|D Chain D, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|E Chain E, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|J Chain J, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|F Chain F, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|G Chain G, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|K Chain K, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|L Chain L, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
Length = 122
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 136 ENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI 187
E +A AGFY++ + VKCF C L W+ +DPWE+H + C Y+
Sbjct: 42 EQLARAGFYALGE---GDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYL 90
>pdb|2JK7|A Chain A, Xiap Bir3 Bound To A Smac Mimetic
Length = 116
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 136 ENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI 187
E +A AGFY++ + VKCF C L W+ +DPWE+H + C Y+
Sbjct: 42 EQLARAGFYALGE---GDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYL 90
>pdb|1G3F|A Chain A, Nmr Structure Of A 9 Residue Peptide From SmacDIABLO
Complexed To The Bir3 Domain Of Xiap
pdb|1TFQ|A Chain A, Nmr Structure Of An Antagonists Of The Xiap-Caspase-9
Interaction Complexed To The Bir3 Domain Of Xiap
pdb|1TFT|A Chain A, Nmr Structure Of An Antagonists Of The Xiap-Caspase-9
Interaction Complexed To The Bir3 Domain Of Xiap
Length = 117
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 136 ENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI 187
E +A AGFY++ + VKCF C L W+ +DPWE+H + C Y+
Sbjct: 43 EQLARAGFYALGE---GDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYL 91
>pdb|1TW6|A Chain A, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A 9MER PEPTIDE
DERIVED From Smac
pdb|1TW6|B Chain B, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A 9MER PEPTIDE
DERIVED From Smac
Length = 133
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 135 PENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI 187
PE +A AGF+ + V+CF C L W+ DDPW EH + C ++
Sbjct: 66 PELLAAAGFFHTG---HQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQFL 115
>pdb|1G73|C Chain C, Crystal Structure Of Smac Bound To Xiap-Bir3 Domain
pdb|1G73|D Chain D, Crystal Structure Of Smac Bound To Xiap-Bir3 Domain
Length = 121
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 136 ENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI 187
E +A AGFY++ + VKCF C L W+ +DPWE+H + C Y+
Sbjct: 45 EQLARAGFYALGE---GDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYL 93
>pdb|1OXN|A Chain A, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXN|B Chain B, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXN|C Chain C, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXN|D Chain D, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXN|E Chain E, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXQ|A Chain A, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXQ|B Chain B, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXQ|C Chain C, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXQ|D Chain D, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXQ|E Chain E, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OY7|A Chain A, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (ml-iap)
pdb|1OY7|B Chain B, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (ml-iap)
pdb|1OY7|C Chain C, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (ml-iap)
pdb|1OY7|D Chain D, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (ml-iap)
pdb|1OY7|E Chain E, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (ml-iap)
Length = 140
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 135 PENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI 187
PE +A AGF+ + V+CF C L W+ DDPW EH + C ++
Sbjct: 66 PELLAAAGFFHTG---HQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPSCQFL 115
>pdb|2I3H|A Chain A, Structure Of An Ml-iap/xiap Chimera Bound To A 4-mer
Peptide (avpw)
pdb|2I3H|B Chain B, Structure Of An Ml-iap/xiap Chimera Bound To A 4-mer
Peptide (avpw)
pdb|2I3I|A Chain A, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
PEPTIDOMIMETIC
pdb|2I3I|B Chain B, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
PEPTIDOMIMETIC
pdb|3F7H|A Chain A, Structure Of An Ml-iap/xiap Chimera Bound To A
Peptidomimetic
pdb|3F7H|B Chain B, Structure Of An Ml-iap/xiap Chimera Bound To A
Peptidomimetic
pdb|3F7I|A Chain A, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
PEPTIDOMIMETIC
pdb|3F7I|B Chain B, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
PEPTIDOMIMETIC
pdb|3GT9|A Chain A, Structure Of An Ml-iap/xiap Chimera Bound To A
Peptidomimetic
pdb|3GT9|B Chain B, Structure Of An Ml-iap/xiap Chimera Bound To A
Peptidomimetic
pdb|3GTA|A Chain A, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
PEPTIDOMIMETIC
pdb|3GTA|B Chain B, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
PEPTIDOMIMETIC
Length = 133
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 135 PENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI 187
PE +A AGF+ + V+CF C L W+ DDPW EH + C ++
Sbjct: 66 PELLAAAGFFHTG---HQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQFL 115
>pdb|3UW5|A Chain A, Crystal Structure Of The Bir Domain Of Mliap Bound To
Gdc0152
pdb|3UW5|B Chain B, Crystal Structure Of The Bir Domain Of Mliap Bound To
Gdc0152
Length = 116
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 135 PENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI 187
PE +A AGF+ + V+CF C L W+ DDPW EH + C ++
Sbjct: 49 PELLAAAGFFHTG---HQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQFL 98
>pdb|3F7G|A Chain A, Structure Of The Bir Domain From Ml-Iap Bound To A
Peptidomimetic
pdb|3F7G|B Chain B, Structure Of The Bir Domain From Ml-Iap Bound To A
Peptidomimetic
pdb|3F7G|C Chain C, Structure Of The Bir Domain From Ml-Iap Bound To A
Peptidomimetic
pdb|3F7G|D Chain D, Structure Of The Bir Domain From Ml-Iap Bound To A
Peptidomimetic
pdb|3F7G|E Chain E, Structure Of The Bir Domain From Ml-Iap Bound To A
Peptidomimetic
Length = 140
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 132 KCTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYI 187
+ PE +A AGF+ + V+CF C L W+ DDPW EH + C ++
Sbjct: 63 EVPPELLAAAGFFHTG---HQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPSCQFL 115
>pdb|3M0A|D Chain D, Crystal Structure Of Traf2:ciap2 Complex
pdb|3M0D|D Chain D, Crystal Structure Of The Traf1:traf2:ciap2 Complex
Length = 75
Score = 43.5 bits (101), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 134 TPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIK 188
+ ++A AGFY ND VKCFCC LD W+ D P E+HK+ C +++
Sbjct: 22 SERSLARAGFYYTGV--ND-KVKCFCCGLMLDNWKRGDSPTEKHKKLYPSCRFVQ 73
>pdb|3M1D|A Chain A, Structure Of Bir1 From Ciap1
pdb|3M1D|B Chain B, Structure Of Bir1 From Ciap1
Length = 85
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 136 ENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIK 188
++A AGFY ND VKCFCC LD W+ D P ++HK+ C +I+
Sbjct: 31 RSLARAGFYYTGV--ND-KVKCFCCGLMLDNWKLGDSPIQKHKQLYPSCSFIQ 80
>pdb|1JD6|A Chain A, Crystal Structure Of Diap1-bir2/hid Complex
pdb|1JD5|A Chain A, Crystal Structure Of Diap1-Bir2GRIM
pdb|1JD4|A Chain A, Crystal Structure Of Diap1-Bir2
pdb|1JD4|B Chain B, Crystal Structure Of Diap1-Bir2
pdb|1Q4Q|A Chain A, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|B Chain B, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|C Chain C, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|D Chain D, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|E Chain E, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|F Chain F, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|G Chain G, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|H Chain H, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|I Chain I, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|J Chain J, Crystal Structure Of A Diap1-Dronc Complex
Length = 124
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 132 KCTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKL 189
K P +A AGF+ V+CF C L W D+PWE+H C ++KL
Sbjct: 41 KQKPHQLAEAGFFYTGV---GDRVRCFSCGGGLMDWNDNDEPWEQHALWLSQCRFVKL 95
>pdb|2VM5|A Chain A, Human Bir2 Domain Of Baculoviral Inhibitor Of Apoptosis
Repeat-Containing 1 (Birc1)
Length = 106
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 134 TPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIK 188
+P ++ AGF K DT V+CF C L WE DDPW+EH + C +++
Sbjct: 39 SPCVLSEAGFVFTGK--QDT-VQCFSCGGCLGNWEEGDDPWKEHAKWFPKCEFLR 90
>pdb|3SIQ|A Chain A, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
pdb|3SIQ|B Chain B, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
pdb|3SIQ|C Chain C, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
pdb|3SIQ|D Chain D, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
pdb|3SIQ|E Chain E, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
pdb|3SIQ|F Chain F, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
Length = 136
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 155 VKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKLNTV 192
VKCF C E+ WE D P EH+R +CP ++ T
Sbjct: 71 VKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPLLRRRTT 108
>pdb|3SIP|E Chain E, Crystal Structure Of Drice And Diap1-Bir1 Complex
pdb|3SIP|F Chain F, Crystal Structure Of Drice And Diap1-Bir1 Complex
Length = 115
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 155 VKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKLNTV 192
VKCF C E+ WE D P EH+R +CP ++ T
Sbjct: 48 VKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPLLRRRTT 85
>pdb|1SDZ|A Chain A, Crystal Structure Of Diap1 Bir1 Bound To A Reaper Peptide
pdb|1SE0|A Chain A, Crystal Structure Of Diap1 Bir1 Bound To A Grim Peptide
Length = 116
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 155 VKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKLNTV 192
VKCF C E+ WE D P EH+R +CP ++ T
Sbjct: 49 VKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPLLRRRTT 86
>pdb|2QRA|D Chain D, Crystal Structure Of Xiap Bir1 Domain (p21 Form)
pdb|2QRA|C Chain C, Crystal Structure Of Xiap Bir1 Domain (p21 Form)
pdb|2QRA|B Chain B, Crystal Structure Of Xiap Bir1 Domain (p21 Form)
pdb|2QRA|A Chain A, Crystal Structure Of Xiap Bir1 Domain (p21 Form)
Length = 111
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 138 MATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIK 188
+A AGF + DT V+CF C +D W+ D H++ +C +I
Sbjct: 59 LARAGFLYTGE--GDT-VRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFIN 106
>pdb|2POP|B Chain B, The Crystal Structure Of Tab1 And Bir1 Complex
pdb|2POP|D Chain D, The Crystal Structure Of Tab1 And Bir1 Complex
Length = 95
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 138 MATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIK 188
+A AGF + DT V+CF C +D W+ D H++ +C +I
Sbjct: 42 LARAGFLYTGE--GDT-VRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFIN 89
>pdb|2POI|A Chain A, Crystal Structure Of Xiap Bir1 Domain (I222 Form)
Length = 94
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 138 MATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIK 188
+A AGF + DT V+CF C +D W+ D H++ +C +I
Sbjct: 42 LARAGFLYTGE--GDT-VRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFIN 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,170,962
Number of Sequences: 62578
Number of extensions: 269285
Number of successful extensions: 587
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 528
Number of HSP's gapped (non-prelim): 63
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)