RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13053
         (242 letters)



>gnl|CDD|197595 smart00238, BIR, Baculoviral inhibition of apoptosis protein
           repeat.  Domain found in inhibitor of apoptosis proteins
           (IAPs) and other proteins. Acts as a direct inhibitor of
           caspase enzymes.
          Length = 71

 Score = 80.8 bits (200), Expect = 4e-20
 Identities = 30/59 (50%), Positives = 37/59 (62%), Gaps = 3/59 (5%)

Query: 131 NKCTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKL 189
           +KCTPE +A AGFY          VKCF C  ELD WE  DDPWEEHK+   +CP+++ 
Sbjct: 16  SKCTPEQLAEAGFYYTG---VGDEVKCFFCGGELDNWEPGDDPWEEHKKWSPNCPFVRN 71


>gnl|CDD|237989 cd00022, BIR, Baculoviral inhibition of apoptosis protein repeat
           domain; Found in inhibitors of apoptosis proteins (IAPs)
           and other proteins. In higher eukaryotes, BIR domains
           inhibit apoptosis by acting as direct inhibitors of the
           caspase family of protease enzymes. In yeast, BIR
           domains are involved in regulating cytokinesis. This
           novel fold is stabilized by zinc tetrahedrally
           coordinated by one histidine and three cysteine residues
           and resembles a classical zinc finger.
          Length = 69

 Score = 78.8 bits (195), Expect = 2e-19
 Identities = 30/59 (50%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 131 NKCTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKL 189
            K TPE +A AGFY   +      VKCF C  EL  WE  DDPWEEHKR   +CP++ L
Sbjct: 14  LKVTPEKLAEAGFYYTGR---GDEVKCFFCGLELKNWEPGDDPWEEHKRWSPNCPFVLL 69


>gnl|CDD|216045 pfam00653, BIR, Inhibitor of Apoptosis domain.  BIR stands for
           'Baculovirus Inhibitor of apoptosis protein Repeat'. It
           is found repeated in inhibitor of apoptosis proteins
           (IAPs), and in fact it is also known as IAP repeat.
           These domains characteristically have a number of
           invariant residues, including 3 conserved cysteines and
           one conserved histidine that coordinate a zinc ion. They
           are usually made up of 4-5 alpha helices and a
           three-stranded beta-sheet. BIR is also found in other
           proteins known as BIR-domain-containing proteins
           (BIRPs), such as Survivin.
          Length = 69

 Score = 75.4 bits (186), Expect = 4e-18
 Identities = 28/58 (48%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 131 NKCTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIK 188
            K +PE +A AGFY          V+CF C  ELD WE  DDPWEEHKR   +CP++ 
Sbjct: 15  AKPSPEKLAEAGFYY---TGTGDRVRCFYCGLELDNWEPDDDPWEEHKRWSPNCPFVL 69


>gnl|CDD|222340 pfam13718, GNAT_acetyltr_2, GNAT acetyltransferase 2.  This domain
           has N-acetyltransferase activity. It has a GCN5-related
           N-acetyltransferase (GNAT) fold.
          Length = 169

 Score = 30.9 bits (71), Expect = 0.33
 Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 3/20 (15%)

Query: 108 GYTEELLSFWLQC---PVKL 124
           G T ELL FW +    PV L
Sbjct: 130 GATPELLKFWQKNGFVPVYL 149


>gnl|CDD|224361 COG1444, COG1444, Predicted P-loop ATPase fused to an
           acetyltransferase [General function prediction only].
          Length = 758

 Score = 31.2 bits (71), Expect = 0.53
 Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 3/20 (15%)

Query: 108 GYTEELLSFWLQC---PVKL 124
           GYTEELL FWL+    PV L
Sbjct: 572 GYTEELLRFWLRNGFVPVHL 591


>gnl|CDD|218198 pfam04662, Luteo_PO, Luteovirus P0 protein.  This family of
           proteins may be involved in suppression of PTGS a plant
           defence mechanism.
          Length = 208

 Score = 27.7 bits (62), Expect = 4.2
 Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 4/58 (6%)

Query: 98  IHPRKIYFLIGYTEELLSFWLQCPVKLELQTVE-NKCTPENMATAGFYSISKLRNDTS 154
             P  +     Y E+L  F L C       T   +   P   +T   Y +   RN +S
Sbjct: 62  YTPGGLQLPRSYHEDLARFGLACGYPPASTTGRIDLRLP---STKDVYRLFLQRNSSS 116


>gnl|CDD|114164 pfam05423, Mycobact_memb, Mycobacterium membrane protein.  This
          family contains several membrane proteins from
          Mycobacterium species.
          Length = 140

 Score = 27.0 bits (60), Expect = 5.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 34 KPLTYEMSGPPHTIAHI 50
          K +TYE+ GPP T+A I
Sbjct: 51 KHVTYEVFGPPGTVADI 67


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.134    0.430 

Gapped
Lambda     K      H
   0.267   0.0726    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,064,707
Number of extensions: 1096735
Number of successful extensions: 745
Number of sequences better than 10.0: 1
Number of HSP's gapped: 741
Number of HSP's successfully gapped: 11
Length of query: 242
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 148
Effective length of database: 6,768,326
Effective search space: 1001712248
Effective search space used: 1001712248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)