RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13053
(242 letters)
>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle,
long helix, protein complex, alternative splicing,
apoptosis, cell cycle, cell division; HET: MES; 1.40A
{Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A
4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A*
3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A*
3uik_A 3uij_A 1m4m_A 2rax_A ...
Length = 142
Score = 91.3 bits (226), Expect = 2e-23
Identities = 32/82 (39%), Positives = 44/82 (53%)
Query: 132 KCTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKLNT 191
CTPE MA AGF +CF C KEL+GWE DDP EEHK+H C ++ +
Sbjct: 32 ACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFLSVKK 91
Query: 192 VEQQWTLEEWIDLQQAMAVKLL 213
++ TL E++ L + A +
Sbjct: 92 QFEELTLGEFLKLDRERAKNKI 113
>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4;
protease-inhibitor, apoptosis-hydrolase complex; 2.40A
{Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A
Length = 141
Score = 85.2 bits (210), Expect = 4e-21
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 132 KCTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKLNT 191
TP +A+AG Y V+CFCC +L WE D W EH+RH +C ++
Sbjct: 59 HLTPRELASAGLYYTGI---GDQVQCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFVLGRN 115
Query: 192 VEQQ 195
+ +
Sbjct: 116 LNIR 119
>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo
sapiens}
Length = 106
Score = 81.9 bits (202), Expect = 3e-20
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 130 ENKCTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKL 189
+P ++ AGF K +V+CF C L WE DDPW+EH + C +++
Sbjct: 35 VQGISPCVLSEAGFVFTGK---QDTVQCFSCGGCLGNWEEGDDPWKEHAKWFPKCEFLRS 91
Query: 190 N 190
Sbjct: 92 K 92
>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger,
apoptosis, cytoplasm, metal-binding, polymorphism, zinc,
zinc-finger, alternative splicing, hydrolase, protease;
1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A*
2uvl_A
Length = 97
Score = 81.1 bits (200), Expect = 4e-20
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 132 KCTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKLN 190
PE +A+AGFY + + ND VKCFCC L WES DDPW EH + C ++
Sbjct: 29 PVQPEQLASAGFYYVGR--NDD-VKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFLIRM 84
>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small
molecule drug discovery, structur drug design, ligase,
metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB:
1nw9_A 2vsl_A
Length = 95
Score = 80.6 bits (199), Expect = 5e-20
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 132 KCTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKLN 190
E +A AGFY++ D VKCF C L W+ +DPWE+H + C Y+
Sbjct: 27 SVNKEQLARAGFYALG--EGDK-VKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQ 82
>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A
{Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A
1jd6_A 1q4q_A
Length = 124
Score = 81.6 bits (201), Expect = 6e-20
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 131 NKCTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKLN 190
K P +A AGF+ V+CF C L W D+PWE+H C ++KL
Sbjct: 40 LKQKPHQLAEAGFFYTGV---GDRVRCFSCGGGLMDWNDNDEPWEQHALWLSQCRFVKLM 96
>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis,
cytoplasm, polymorphism, zinc, zinc-FIN metal binding
protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D
Length = 85
Score = 79.9 bits (197), Expect = 8e-20
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 132 KCTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIK 188
+ ++A AGFY + VKCFCC LD W+ D P ++HK+ C +I+
Sbjct: 27 PVSERSLARAGFYYTGV---NDKVKCFCCGLMLDNWKLGDSPIQKHKQLYPSCSFIQ 80
>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif,
apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} PDB:
3oz1_A*
Length = 122
Score = 80.4 bits (198), Expect = 1e-19
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 132 KCTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKLN 190
PE +A+AGFY + + ND VKCFCC L WES DDPW EH + C ++
Sbjct: 35 PVQPEQLASAGFYYVGR--NDD-VKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFLIRM 90
>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A
{Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A
3sip_E
Length = 116
Score = 80.0 bits (197), Expect = 2e-19
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 131 NKCTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKLN 190
+ +A G Y VKCF C E+ WE D P EH+R +CP ++
Sbjct: 28 DWLDKRQLAQTGMYFTHA---GDKVKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPLLRRR 84
Query: 191 TV 192
T
Sbjct: 85 TT 86
>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila
melanogaster}
Length = 136
Score = 80.1 bits (197), Expect = 3e-19
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 131 NKCTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKLN 190
+ +A G Y VKCF C E+ WE D P EH+R +CP ++
Sbjct: 50 DWLDKRQLAQTGMYFTHA---GDKVKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPLLRRR 106
Query: 191 TV 192
T
Sbjct: 107 TT 108
>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling
protein/apoptosis complex; 1.80A {Homo sapiens} PDB:
2pop_B
Length = 94
Score = 78.4 bits (193), Expect = 3e-19
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 131 NKCTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIK 188
+ + +A AGF + DT V+CF C +D W+ D H++ +C +I
Sbjct: 35 SPVSASTLARAGFLYTGE--GDT-VRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFIN 89
>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor;
apoptosis, signaling protein, zinc binding; 2.50A {Homo
sapiens}
Length = 111
Score = 78.1 bits (192), Expect = 7e-19
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 132 KCTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIK 188
+ +A AGF + DT V+CF C +D W+ D H++ +C +I
Sbjct: 53 PVSASTLARAGFLYTGE--GDT-VRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFIN 106
>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle,
zinc-binding domain, apoptosis/apoptosis inhibitor
complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB:
3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A*
3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A
Length = 121
Score = 78.1 bits (192), Expect = 1e-18
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 132 KCTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKL-- 189
E +A AGFY++ D VKCF C L W+ +DPWE+H + C Y+
Sbjct: 41 SVNKEQLARAGFYALG--EGDK-VKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQK 97
Query: 190 -----NTVEQQWTLEE 200
N + +LEE
Sbjct: 98 GQEYINNIHLTHSLEE 113
>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide
complex, apoptosis inhibition, peptidomimetic, small
molecule, drug design, inhibitor/apoptosis complex; HET:
BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A*
3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A*
1oxn_A* 1oxq_A* 1oy7_A*
Length = 133
Score = 74.7 bits (183), Expect = 3e-17
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 130 ENKCTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKL 189
+ PE +A AGF+ V+CF C L W+ DDPW EH + C ++
Sbjct: 61 TAEVPPELLAAAGFFHTGHQDK---VRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQFLLR 117
Query: 190 N 190
+
Sbjct: 118 S 118
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA,
apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase,
IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB:
1qbh_A 2l9m_A 3eb5_A 3eb6_A
Length = 345
Score = 70.4 bits (170), Expect = 2e-14
Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 132 KCTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKL 189
PE +A+AGFY + RND VKCF C L WES DDPW EH + C ++
Sbjct: 21 PVQPEQLASAGFYYVG--RNDD-VKCFSCDGGLRCWESGDDPWVEHAKWFPRCEFLIR 75
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.3 bits (114), Expect = 1e-06
Identities = 38/284 (13%), Positives = 81/284 (28%), Gaps = 70/284 (24%)
Query: 6 VDIRGISTSATLLKHVQAARYKTSKKGDKPLTYEMSGPPHTIAHIKSW-----NSWNTCN 60
++++ ++ T+L+ +Q Y+ + S I I++ S N
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH-SSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 61 ML---DGLRPSETAVEDEF-IQ---IIIKRQHNIIRIGGIVERAIHPRKIYFLIGYTE-- 111
L ++ ++ + F + ++ R + H + + T
Sbjct: 246 CLLVLLNVQNAKAW--NAFNLSCKILLTTRFKQVTDFLS-AATTTHISLDHHSMTLTPDE 302
Query: 112 --ELLSFWLQCPVKLELQTVENKCTP-----------ENMATAGFY---SISKLRNDTSV 155
LL +L C + +L P + +AT + + KL
Sbjct: 303 VKSLLLKYLDCRPQ-DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 156 KCFCCLKELDGWESMDDPWEEHKRHQKDC---P---YIKLNTVEQQWTLEEWIDLQQAMA 209
L L +P E+++ P +I + W D+ +
Sbjct: 362 ----SLNVL-------EP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV-VV 408
Query: 210 VKLLG-TCAEVRSVEYCY---------------QRNWHKRAVTS 237
KL + E + E + H+ V
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.41
Identities = 32/171 (18%), Positives = 62/171 (36%), Gaps = 58/171 (33%)
Query: 14 SATLLKHVQAARYKTSKK--GDKP--LTYEMSGP-PHT--------IAHIKSWNSW--NT 58
S L+ +Q A Y + K G P L + G H+ IA SW S+ +
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV 296
Query: 59 CNMLD-----GLR-----PSETAVEDEFIQIIIKRQHNI----IRIGGI----VERAI-- 98
+ G+R P+ T++ ++ ++ + + I + V+ +
Sbjct: 297 RKAITVLFFIGVRCYEAYPN-TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 99 ---H-P--RKIYF-LI---------GYTEEL--LSFWLQ---CPVKLELQT 128
H P +++ L+ G + L L+ L+ P L+ Q+
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD-QS 405
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.430
Gapped
Lambda K H
0.267 0.0518 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,811,557
Number of extensions: 216342
Number of successful extensions: 362
Number of sequences better than 10.0: 1
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 23
Length of query: 242
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 151
Effective length of database: 4,160,982
Effective search space: 628308282
Effective search space used: 628308282
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.8 bits)