RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13053
(242 letters)
>d2qfaa1 g.52.1.1 (A:5-141) Anti-apoptotic protein survivin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 137
Score = 89.7 bits (222), Expect = 2e-23
Identities = 31/75 (41%), Positives = 42/75 (56%)
Query: 132 KCTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKLNT 191
CTPE MA AGF +CF C KEL+GWE DDP EEHK+H C ++ +
Sbjct: 28 ACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFLSVKK 87
Query: 192 VEQQWTLEEWIDLQQ 206
++ TL E++ L +
Sbjct: 88 QFEELTLGEFLKLDR 102
>d1se0a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 97
Score = 79.9 bits (197), Expect = 4e-20
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 131 NKCTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKLN 190
+ +A G Y D VKCF C E+ WE D P EH+R +CP ++
Sbjct: 19 DWLDKRQLAQTGMYFTH--AGDK-VKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPLLRRR 75
Query: 191 TV 192
T
Sbjct: 76 TT 77
>d2i3ha1 g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-IAP,
livin) {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 79.9 bits (197), Expect = 4e-20
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 131 NKCTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKLN 190
+ PE +A AGF+ + V+CF C L W+ DDPW EH + C ++ +
Sbjct: 24 AEVPPELLAAAGFFH---TGHQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQFLLRS 80
>d2vsla1 g.52.1.1 (A:250-345) BIR domains of XIAP {Human (Homo
sapiens) [TaxId: 9606]}
Length = 96
Score = 79.5 bits (196), Expect = 5e-20
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 126 LQTVEN---KCTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQK 182
+ T E +A AGFY++ VKCF C L W+ +DPWE+H +
Sbjct: 20 IFTFGTWIYSVNKEQLARAGFYAL---GEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYP 76
Query: 183 DCPYIKLN 190
C Y+
Sbjct: 77 GCKYLLEQ 84
>d1jd5a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 105
Score = 79.2 bits (195), Expect = 1e-19
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 131 NKCTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKLN 190
K P +A AGF+ D V+CF C L W D+PWE+H C ++KL
Sbjct: 27 LKQKPHQLAEAGFFYTG--VGDR-VRCFSCGGGLMDWNDNDEPWEQHALWLSQCRFVKLM 83
>d1i3oe_ g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sapiens)
[TaxId: 9606]}
Length = 111
Score = 79.2 bits (195), Expect = 1e-19
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 131 NKCTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKLN 190
TP +A+AG Y V+CF C +L WE D W EH+RH +C ++
Sbjct: 51 AHLTPRELASAGLYYTG---IGDQVQCFACGGKLKNWEPGDRAWSEHRRHFPNCFFVLGR 107
Query: 191 TV 192
+
Sbjct: 108 NL 109
>d3d9ta1 g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 87
Score = 75.3 bits (185), Expect = 2e-18
Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 131 NKCTPENMATAGFYSISKLRNDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDCPYIKLN 190
PE +A+AGFY + RND VKCFCC L WES DDPW EH + C ++
Sbjct: 18 VPVQPEQLASAGFYYVG--RNDD-VKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFLIRM 74
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 824
Score = 29.6 bits (66), Expect = 0.36
Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 1/74 (1%)
Query: 165 DGWESMDDPWEEHKRHQKDCPYIKLNTVEQQWTLEEWIDLQQAMAVKLLGTCAEVRSVEY 224
D W +PWE R + P VE +W+D Q +A+ R+
Sbjct: 169 DDWLRYGNPWE-KARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVV 227
Query: 225 CYQRNWHKRAVTSV 238
R W +A
Sbjct: 228 NTMRLWSAKAPNDF 241
>d1zhva1 d.58.18.8 (A:2-61) Hypothetical protein Atu0741
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 60
Score = 25.1 bits (55), Expect = 2.2
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 135 PENMATAGFYSISKLRNDTSVKC 157
P GF SI++ ++ S+ C
Sbjct: 25 PAWADGGGFVSITRTDDELSIVC 47
>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia
coli [TaxId: 562]}
Length = 235
Score = 26.3 bits (57), Expect = 2.9
Identities = 15/94 (15%), Positives = 25/94 (26%), Gaps = 2/94 (2%)
Query: 151 NDTSVKCFCCLKELDGWESMDDPWEEHKRHQKDC--PYIKLNTVEQQWTLEEWIDLQQAM 208
V+C + LD + + H P++ E ++ L A
Sbjct: 110 ELLKVRCSQSGQVLDWTGDVTPEDKCHCCQFPAPLRPHVVWFGEMPLGMDEIYMALSMAD 169
Query: 209 AVKLLGTCAEVRSVEYCYQRNWHKRAVTSVIGLG 242
+GT V A T + L
Sbjct: 170 IFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLE 203
>d1j6qa_ b.40.9.1 (A:) Heme chaperone CcmE {Shewanella putrefaciens
[TaxId: 24]}
Length = 100
Score = 25.3 bits (55), Expect = 3.3
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 67 PSETAVEDEFIQIIIKRQHNIIRIGGIVE-----RAIHPRKIYFLI 107
PSE V + + IR+GG+V R + + F +
Sbjct: 9 PSE-IVNGKTDTGVKPEAGQRIRVGGMVTVGSMVRDPNSLHVQFAV 53
>d1uwka_ e.51.1.1 (A:) Urocanate hydratase HutU {Pseudomonas putida
[TaxId: 303]}
Length = 554
Score = 25.9 bits (57), Expect = 5.0
Identities = 6/34 (17%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 198 LEEWIDLQQAMAVKLLGTCAEVRSVEYCYQRNWH 231
+ ++ +A+++ L G AE+ + +R
Sbjct: 223 IAKYTAEGKAISIALHGNAAEI--LPELVKRGVR 254
>d1ddba_ f.1.4.1 (A:) Proapoptotic molecule Bid {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 195
Score = 25.6 bits (56), Expect = 5.2
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 63 DGLRPSETAVEDEFIQIIIKRQHNIIRIGGIVERAIHPR 101
G ++ ++E I I R + +IG ++ I P
Sbjct: 69 QGRIEPDSESQEEIIHNI-ARH--LAQIGDEMDHNIQPT 104
>d2fa8a1 c.47.1.23 (A:4-89) Hypothetical protein Atu0228
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 86
Score = 23.8 bits (52), Expect = 9.8
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 221 SVEYCYQRNWHKRAV 235
++ YC Q NW RA
Sbjct: 6 AIRYCTQCNWLLRAG 20
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.430
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 968,327
Number of extensions: 45207
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 17
Length of query: 242
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,268,006
Effective search space: 201612954
Effective search space used: 201612954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)