BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13054
(1128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|B Chain B, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|C Chain C, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|D Chain D, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2WWR|A Chain A, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|B Chain B, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|C Chain C, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|D Chain D, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
Length = 330
Score = 213 bits (542), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 118/256 (46%), Positives = 153/256 (59%), Gaps = 5/256 (1%)
Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934
NLKVI+T SVG DHL L EIK RGIRVG + +DT AE + L + RR E + +
Sbjct: 76 NLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEV 135
Query: 935 TSGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK-E 992
+G W + K + G GL +TVGI+GLG IG A+ LK F V + LYT R+ + E
Sbjct: 136 KNGGWTSWKPLWLCG---YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPE 192
Query: 993 EGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052
E A+ V L A+SDFI V C+LT TE L + F MK TA+ +N SRG +++
Sbjct: 193 EAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVN 252
Query: 1053 QEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSA 1112
Q+ L + L KI AGLDV PEPLP +HPL+ L NCV+ PH SAT R+ S +A
Sbjct: 253 QDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAA 312
Query: 1113 ENIIRGYKGEPMIYEL 1128
N++ G +GEPM EL
Sbjct: 313 NNLLAGLRGEPMPSEL 328
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 103/227 (45%), Gaps = 48/227 (21%)
Query: 516 KLFLTRDDYSRVPA--FEILGEMFDI-ITYPASEGQIPRDIFIEKLRGCSALLCTSRDRV 572
K+F+TR R+PA L D + S+ IP + G LLC D V
Sbjct: 10 KVFVTR----RIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHV 65
Query: 573 DKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYD 632
DK++LD +G NLKVI+T SVG D
Sbjct: 66 DKRILDAAGA-------------------------------------NLKVISTMSVGID 88
Query: 633 HLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEW-ALKQTHI 691
HL L EIK RGIRVG + +DT AE + L + RR E + + +G W + K +
Sbjct: 89 HLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWL 148
Query: 692 IGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738
G GL +TVGI+GLG IG A+ LK F V + LYT R+ + E
Sbjct: 149 CG---YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPE 192
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 58/92 (63%)
Query: 309 AQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVE 368
A+ V L A+SDFI V C+LT TE L + F MK TA+ IN SRG +++Q+ L +
Sbjct: 199 AEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQ 258
Query: 369 FLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400
L KI AGLDV PEPLP +HPL+ L NC
Sbjct: 259 ALASGKIAAAGLDVTSPEPLPTNHPLLTLKNC 290
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 53/93 (56%)
Query: 65 SEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKS 124
S+ +P + G LLC VDK +LD +G NLKVI+T SVG DHL LDEIK
Sbjct: 38 SDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKK 97
Query: 125 RGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQ 157
RGIRVG V +DT AE + L + RR +
Sbjct: 98 RGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPE 130
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 812 NGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRN 865
NG W + K + G GL +TVGI+GLG IG A+ LK F V + LYT R
Sbjct: 137 NGGWTSWKPLWLCG---YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQ 188
>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|B Chain B, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|C Chain C, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|D Chain D, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2Q50|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
Length = 328
Score = 207 bits (527), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/256 (45%), Positives = 151/256 (58%), Gaps = 5/256 (1%)
Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934
NLKVI+T SVG DHL L EIK RGIRVG + +DT AE + L + RR E + +
Sbjct: 74 NLKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEV 133
Query: 935 TSGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK-E 992
+G W + K + G GL +TVGI+GLG IG A+ LK F V + LYT R+ + E
Sbjct: 134 KNGGWTSWKPLWLCG---YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPE 190
Query: 993 EGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052
E A+ V L A+SDFI V C+LT TE L + F K TA+ +N SRG +++
Sbjct: 191 EAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFINISRGDVVN 250
Query: 1053 QEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSA 1112
Q+ L + L KI AGLDV PEPLP +HPL+ L NCV+ PH SAT R+ S +A
Sbjct: 251 QDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTXSLLAA 310
Query: 1113 ENIIRGYKGEPMIYEL 1128
N++ G +GEP EL
Sbjct: 311 NNLLAGLRGEPXPSEL 326
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 103/227 (45%), Gaps = 48/227 (21%)
Query: 516 KLFLTRDDYSRVPA--FEILGEMFDI-ITYPASEGQIPRDIFIEKLRGCSALLCTSRDRV 572
K+F+TR R+PA L D + S+ IP + G LLC D V
Sbjct: 8 KVFVTR----RIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHV 63
Query: 573 DKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYD 632
DK++LD +G NLKVI+T SVG D
Sbjct: 64 DKRILDAAGA-------------------------------------NLKVISTXSVGID 86
Query: 633 HLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEW-ALKQTHI 691
HL L EIK RGIRVG + +DT AE + L + RR E + + +G W + K +
Sbjct: 87 HLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWL 146
Query: 692 IGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738
G GL +TVGI+GLG IG A+ LK F V + LYT R+ + E
Sbjct: 147 CG---YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPE 190
Score = 90.1 bits (222), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 57/92 (61%)
Query: 309 AQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVE 368
A+ V L A+SDFI V C+LT TE L + F K TA+ IN SRG +++Q+ L +
Sbjct: 197 AEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFINISRGDVVNQDDLYQ 256
Query: 369 FLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400
L KI AGLDV PEPLP +HPL+ L NC
Sbjct: 257 ALASGKIAAAGLDVTSPEPLPTNHPLLTLKNC 288
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 53/93 (56%)
Query: 65 SEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKS 124
S+ +P + G LLC VDK +LD +G NLKVI+T SVG DHL LDEIK
Sbjct: 36 SDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTXSVGIDHLALDEIKK 95
Query: 125 RGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQ 157
RGIRVG V +DT AE + L + RR +
Sbjct: 96 RGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPE 128
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 812 NGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRN 865
NG W + K + G GL +TVGI+GLG IG A+ LK F V + LYT R
Sbjct: 135 NGGWTSWKPLWLCG---YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQ 186
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 154 bits (389), Expect = 2e-37, Method: Composition-based stats.
Identities = 102/270 (37%), Positives = 150/270 (55%), Gaps = 11/270 (4%)
Query: 856 VSKILYTSRNKV--KTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVA 913
V I+ S+ KV + + LKVI VG D++++ K +GI V + SS +VA
Sbjct: 45 VEAIIVRSKPKVTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVA 104
Query: 914 EYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLET 971
E +GL +V+R+ + + G WA K+ MG L+G T+GI+G G IG +
Sbjct: 105 ELAVGLMFSVARKIAFADRKMREGVWAKKEA-------MGIELEGKTIGIIGFGRIGYQV 157
Query: 972 AKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031
AK+ A ++ +LY +E + + V L+TL ESD + + L + T LI +
Sbjct: 158 AKIANALGMNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEE 217
Query: 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCV 1091
+ LMK TAIL+NTSRG ++D ALV+ LK+ I GAGLDV EPLP DHPL + DN V
Sbjct: 218 RLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVV 277
Query: 1092 LTPHTSSATKAVRDEKSSTSAENIIRGYKG 1121
LTPH ++T ++ AE +++ KG
Sbjct: 278 LTPHIGASTVEAQERAGVEVAEKVVKILKG 307
Score = 92.8 bits (229), Expect = 9e-19, Method: Composition-based stats.
Identities = 47/93 (50%), Positives = 60/93 (64%)
Query: 307 LGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEAL 366
+ + V L+TL ESD + + L + T LI ++ LMK TAILINTSRG ++D AL
Sbjct: 183 VNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNAL 242
Query: 367 VEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399
V+ LK+ I GAGLDV EPLP DHPL + DN
Sbjct: 243 VKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDN 275
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 72 DIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGT 131
D +E +K A++ KV + V++ S LKVIA VG D++ ++ K +GI V
Sbjct: 36 DRLVELVKDVEAIIVRSKPKVTRRVIE-SAPKLKVIARAGVGLDNIDVEAAKEKGIEVVN 94
Query: 132 VGPVSSDTVAEYNIGLAIAVSRR 154
SS +VAE +GL +V+R+
Sbjct: 95 APAASSRSVAELAVGLMFSVARK 117
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 13/123 (10%)
Query: 621 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 680
LKVI VG D++++ K +GI V + SS +VAE +GL +V+R+ + +
Sbjct: 67 LKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMR 126
Query: 681 SGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILY----TSRR 734
G WA K+ MG L+G T+GI+G G IG + AK+ A ++ +LY R
Sbjct: 127 EGVWAKKEA-------MGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEER 179
Query: 735 VKE 737
KE
Sbjct: 180 AKE 182
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 135 bits (340), Expect = 1e-31, Method: Composition-based stats.
Identities = 106/279 (37%), Positives = 156/279 (55%), Gaps = 8/279 (2%)
Query: 850 LLKAFKVSKILYTSRNKVKTPKRTEN---LKVITTFSVGYDHLELHEIKARGIRVGSVGH 906
LLK K L T ++ + EN L+++ ++VGYD++++ E RGI V +
Sbjct: 39 LLKKVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPD 98
Query: 907 ISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG--LKGATVGIVGL 964
+ +D A+ L +A +R +G + + SGEW + +G + G T+GI+GL
Sbjct: 99 VLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGL 158
Query: 965 GNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKD 1023
G IG AK K F + +ILY SR KEE L A+ PL+ L ESDF+ + LT++
Sbjct: 159 GRIGQAIAKRAKGFNM-RILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRE 217
Query: 1024 TEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHP 1083
T LI ++ LMK TAIL+N +RG ++D ALV+ LK+ I GAGLDV EP +
Sbjct: 218 TYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPY-YNEE 276
Query: 1084 LVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGE 1122
L +LDN VLTPH SA+ R+ + A+N+I +GE
Sbjct: 277 LFKLDNVVLTPHIGSASFGAREGMAELVAKNLIAFKRGE 315
Score = 80.5 bits (197), Expect = 5e-15, Method: Composition-based stats.
Identities = 44/93 (47%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 307 LGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEAL 366
L A+ PL+ L ESDF+ + LT++T LI ++ LMK TAILIN +RG ++D AL
Sbjct: 191 LNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNAL 250
Query: 367 VEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399
V+ LK+ I GAGLDV EP + L +LDN
Sbjct: 251 VKALKEGWIAGAGLDVFEEEPY-YNEELFKLDN 282
Score = 62.0 bits (149), Expect = 2e-09, Method: Composition-based stats.
Identities = 66/229 (28%), Positives = 111/229 (48%), Gaps = 48/229 (20%)
Query: 514 KPKLFLTRDDYSRVP--AFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDR 571
KPK+F+TR+ +P ++L + F++ + E +IPR+I ++K++ AL+ +R
Sbjct: 2 KPKVFITRE----IPEVGIKMLEDEFEVEVW-GDEKEIPREILLKKVKEVDALVTMLSER 56
Query: 572 VDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGY 631
+DK+V F N K L+++ ++VGY
Sbjct: 57 IDKEV---------------------FENAPK-----------------LRIVANYAVGY 78
Query: 632 DHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHI 691
D++++ E RGI V + + +D A+ L +A +R +G + + SGEW +
Sbjct: 79 DNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAW 138
Query: 692 IGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738
+G + G T+GI+GLG IG AK K F + +ILY SR KEE
Sbjct: 139 HPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTRKEE 186
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 44 VPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGEN 103
+PE K+ F+++ + E +PR+I ++K+K AL+ +++DKEV + +
Sbjct: 11 IPEVGIKM-LEDEFEVEVWG-DEKEIPREILLKKVKEVDALVTMLSERIDKEVFE-NAPK 67
Query: 104 LKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSD 138
L+++A ++VG+D++ ++E RGI V V +D
Sbjct: 68 LRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTD 102
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41)
Length = 334
Score = 132 bits (333), Expect = 8e-31, Method: Composition-based stats.
Identities = 105/279 (37%), Positives = 154/279 (55%), Gaps = 8/279 (2%)
Query: 850 LLKAFKVSKILYTSRNKVKTPKRTEN---LKVITTFSVGYDHLELHEIKARGIRVGSVGH 906
LLK K L T ++ + EN L+++ ++VGYD++++ E RGI V +
Sbjct: 39 LLKKVKEVDALVTXLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPD 98
Query: 907 ISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG--LKGATVGIVGL 964
+ +D A+ L +A +R +G + + SGEW + +G + G T+GI+GL
Sbjct: 99 VLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGL 158
Query: 965 GNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKD 1023
G IG AK K F +ILY SR KEE L A+ PL+ L ESDF+ + LT++
Sbjct: 159 GRIGQAIAKRAKGFN-XRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRE 217
Query: 1024 TEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHP 1083
T LI ++ L K TAIL+N +RG ++D ALV+ LK+ I GAGLDV EP +
Sbjct: 218 TYHLINEERLKLXKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPY-YNEE 276
Query: 1084 LVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGE 1122
L +LDN VLTPH SA+ R+ + A+N+I +GE
Sbjct: 277 LFKLDNVVLTPHIGSASFGAREGXAELVAKNLIAFKRGE 315
Score = 77.8 bits (190), Expect = 3e-14, Method: Composition-based stats.
Identities = 43/93 (46%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 307 LGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEAL 366
L A+ PL+ L ESDF+ + LT++T LI ++ L K TAILIN +RG ++D AL
Sbjct: 191 LNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTAILINIARGKVVDTNAL 250
Query: 367 VEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399
V+ LK+ I GAGLDV EP + L +LDN
Sbjct: 251 VKALKEGWIAGAGLDVFEEEPY-YNEELFKLDN 282
Score = 60.5 bits (145), Expect = 6e-09, Method: Composition-based stats.
Identities = 67/229 (29%), Positives = 109/229 (47%), Gaps = 48/229 (20%)
Query: 514 KPKLFLTRDDYSRVPAFEI--LGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDR 571
KPK+F+TR+ +P I L + F++ + E +IPR+I ++K++ AL+ +R
Sbjct: 2 KPKVFITRE----IPEVGIKXLEDEFEVEVW-GDEKEIPREILLKKVKEVDALVTXLSER 56
Query: 572 VDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGY 631
+DK+V F N K L+++ ++VGY
Sbjct: 57 IDKEV---------------------FENAPK-----------------LRIVANYAVGY 78
Query: 632 DHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHI 691
D++++ E RGI V + + +D A+ L +A +R +G + + SGEW +
Sbjct: 79 DNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAW 138
Query: 692 IGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738
+G + G T+GI+GLG IG AK K F +ILY SR KEE
Sbjct: 139 HPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFN-XRILYYSRTRKEE 186
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 57 FDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDH 116
F+++ + E +PR+I ++K+K AL+ +++DKEV + + L+++A ++VG+D+
Sbjct: 23 FEVEVWG-DEKEIPREILLKKVKEVDALVTXLSERIDKEVFE-NAPKLRIVANYAVGYDN 80
Query: 117 LHLDEIKSRGIRVGTVGPVSSD 138
+ ++E RGI V V +D
Sbjct: 81 IDIEEATKRGIYVTNTPDVLTD 102
>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|B Chain B, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|C Chain C, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|D Chain D, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
Length = 311
Score = 132 bits (332), Expect = 1e-30, Method: Composition-based stats.
Identities = 99/253 (39%), Positives = 144/253 (56%), Gaps = 9/253 (3%)
Query: 872 RTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGR 931
R + LKVI +SVG DH++L + RGIRV + ++ A+ + L +AV+RR EG
Sbjct: 62 RAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGA 121
Query: 932 KCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK 991
G W K H + L+G T+G+VG+G IG AK AF + +++Y +R K
Sbjct: 122 AYARDGLW--KAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHARTPK 178
Query: 992 EEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLL 1051
L + L+ L E+D + + LT +T +L+ R++ MK AIL+NT+RG L+
Sbjct: 179 ----PLPYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALV 234
Query: 1052 DQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111
D EALVE L+ + GAGLDV PEPLP HPL L N V+TPH SA + R+ + +
Sbjct: 235 DTEALVEALRGH-LFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVA 293
Query: 1112 AENIIRGYKG-EP 1123
EN++ +G EP
Sbjct: 294 VENLLAVLEGREP 306
Score = 79.0 bits (193), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/89 (47%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 311 LVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFL 370
+ L+ L E+D + + LT +T +L+ R++ MK AIL+NT+RG L+D EALVE L
Sbjct: 184 FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEAL 243
Query: 371 KDKKIGGAGLDVMIPEPLPADHPLVQLDN 399
+ + GAGLDV PEPLP HPL L N
Sbjct: 244 RG-HLFGAGLDVTDPEPLPPGHPLYALPN 271
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 69 MPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIR 128
+P+ +++++G L+ ++D EV+DR+ + LKVIA +SVG DH+ L+ + RGIR
Sbjct: 32 LPKAELLKRVEGAVGLIPTVEDRIDAEVMDRA-KGLKVIACYSVGVDHVDLEAARERGIR 90
Query: 129 V 129
V
Sbjct: 91 V 91
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 41/188 (21%)
Query: 549 IPRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNI 608
+P+ ++++ G L+ T DR+D +V+D +
Sbjct: 32 LPKAELLKRVEGAVGLIPTVEDRIDAEVMDRA---------------------------- 63
Query: 609 ETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAV 668
K LKVI +SVG DH++L + RGIRV + ++ A+ + L +AV
Sbjct: 64 ----------KGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAV 113
Query: 669 SRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKI 728
+RR EG G W K H + L+G T+G+VG+G IG AK AF + ++
Sbjct: 114 ARRVVEGAAYARDGLW--KAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGM-RV 170
Query: 729 LYTSRRVK 736
+Y +R K
Sbjct: 171 VYHARTPK 178
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 128/252 (50%), Gaps = 12/252 (4%)
Query: 876 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 935
L+++++FSVG D ++L + + +G+RV + + +D VA+ IGL +AV RR E K +
Sbjct: 88 LEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVR 147
Query: 936 SGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG- 994
G W + G VGI+GLG IGL A+ +AF I Y SR K
Sbjct: 148 RGAWKFGDFKLT----TKFSGKRVGIIGLGRIGLAVAERAEAFD-CPISYFSRSKKPNTN 202
Query: 995 -TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQ 1053
T G+ + L + SD + V C LT +T +I R+ + P +L+N RG +D+
Sbjct: 203 YTYYGSVV----ELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDE 258
Query: 1054 EALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAE 1113
LV L + ++GGAGLDV EP L L+N VL PH S T R +
Sbjct: 259 PELVSALVEGRLGGAGLDVFEREP-EVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVG 317
Query: 1114 NIIRGYKGEPMI 1125
N+ + G+P++
Sbjct: 318 NLEAHFSGKPLL 329
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Query: 618 IKNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRK 677
+ L+++++FSVG D ++L + + +G+RV + + +D VA+ IGL +AV RR E K
Sbjct: 85 LPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDK 144
Query: 678 CITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK 736
+ G W + G VGI+GLG IGL A+ +AF I Y SR K
Sbjct: 145 YVRRGAWKFGDFKL----TTKFSGKRVGIIGLGRIGLAVAERAEAFD-CPISYFSRSKK 198
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 293 YFGYNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL 352
YF + +N T G+ + L + SD + V C LT +T +I R+ + P +L
Sbjct: 192 YFSRSKKPNTNYTYYGSVV----ELASNSDILVVACPLTPETTHIINREVIDALGPKGVL 247
Query: 353 INTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEP 387
IN RG +D+ LV L + ++GGAGLDV EP
Sbjct: 248 INIGRGPHVDEPELVSALVEGRLGGAGLDVFEREP 282
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 69/133 (51%), Gaps = 7/133 (5%)
Query: 53 FNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSV 112
+ RF + Y + RD + + A++ N + D E++D + L+++++FSV
Sbjct: 40 LDKRFKLFRYWTQPAQ--RDFLALQAESIRAVVGNSNAGADAELID-ALPKLEIVSSFSV 96
Query: 113 GHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLS-SFAEI 171
G D + L + + +G+RV V +D VA+ IGL +AV RR + ++ R + F +
Sbjct: 97 GLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKFGDF 156
Query: 172 QTRALDTKFPAKQ 184
+ L TKF K+
Sbjct: 157 K---LTTKFSGKR 166
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 830 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNK 866
G VGI+GLG IGL A+ +AF I Y SR+K
Sbjct: 162 FSGKRVGIIGLGRIGLAVAERAEAFD-CPISYFSRSK 197
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii
Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii
Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii
Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii
Ot3
Length = 333
Score = 126 bits (317), Expect = 5e-29, Method: Composition-based stats.
Identities = 83/254 (32%), Positives = 130/254 (51%), Gaps = 4/254 (1%)
Query: 871 KRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEG 930
+ E LKVI+ S GYD+++L E RGI V V + S+ VAE+ +GL I + R+
Sbjct: 60 ENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYA 119
Query: 931 RKCITSGEWALKQTHIIG-PNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 989
K I GEW G I L G VGI+G+G IG A+ L F V ++ R
Sbjct: 120 DKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHR 179
Query: 990 VKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGG 1049
L A+ + +D L +SD + + LT+DT +I ++ ++ LVN RG
Sbjct: 180 KVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLE-GKYLVNIGRGA 238
Query: 1050 LLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLD-NCVLTPHTSSATKAVRDEKS 1108
L+D++A+ E +K K+ G DV EP+ +H L + + VLTPH + +++
Sbjct: 239 LVDEKAVTEAIKQGKLKGYATDVFEKEPV-REHELFKYEWETVLTPHYAGLALEAQEDVG 297
Query: 1109 STSAENIIRGYKGE 1122
+ EN+++ +GE
Sbjct: 298 FRAVENLLKVLRGE 311
Score = 73.9 bits (180), Expect = 5e-13, Method: Composition-based stats.
Identities = 48/119 (40%), Positives = 63/119 (52%), Gaps = 2/119 (1%)
Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678
+ LKVI+ S GYD+++L E RGI V V + S+ VAE+ +GL I + R+ K
Sbjct: 63 ERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKF 122
Query: 679 ITSGEWALKQTHIIG-PNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK 736
I GEW G I L G VGI+G+G IG A+ L F V K+ Y SR K
Sbjct: 123 IRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRHRK 180
Score = 60.1 bits (144), Expect = 7e-09, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 17/134 (12%)
Query: 46 ESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGC----SALLCNPHQKVDKEVLDRSG 101
E+L +L+ + +I YP E +LKG ++ +P K+ +EVL+ +
Sbjct: 14 EALEELKKYADVEIILYPSGE----------ELKGVIGRFDGIIVSPTTKITREVLE-NA 62
Query: 102 ENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNW 161
E LKVI+ S G+D++ L+E RGI V V + S+ VAE+ +GL I + R+ +
Sbjct: 63 ERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKF 122
Query: 162 IAR--LSSFAEIQT 173
I R S A+I T
Sbjct: 123 IRRGEWESHAKIWT 136
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 307 LGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEAL 366
L A+ + +D L +SD + + LT+DT +I ++ ++ L+N RG L+D++A+
Sbjct: 187 LKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLE-GKYLVNIGRGALVDEKAV 245
Query: 367 VEFLKDKKIGGAGLDVMIPEPLPADHPLVQLD 398
E +K K+ G DV EP+ +H L + +
Sbjct: 246 TEAIKQGKLKGYATDVFEKEPV-REHELFKYE 276
Score = 30.8 bits (68), Expect = 4.2, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 813 GEWALKQTHIIG-PNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNK 866
GEW G I L G VGI+G+G IG A+ L F V K+ Y SR++
Sbjct: 126 GEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRHR 179
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 122 bits (307), Expect = 9e-28, Method: Composition-based stats.
Identities = 83/256 (32%), Positives = 130/256 (50%), Gaps = 13/256 (5%)
Query: 876 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 935
L+VI G+D+ ++ ARG+ + V + + AE IGLA+ + R + +
Sbjct: 68 LRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVR 127
Query: 936 SGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGT 995
SG++ Q G GL ATVG +G+G IGL A L+ + + + Y +R+ + T
Sbjct: 128 SGQFRGWQPRFYG---TGLDNATVGFLGMGAIGLAMADRLQGWGAT-LQYHARKALDTQT 183
Query: 996 A--LGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQ 1053
LG + V L A SDFI + L DT L+ + +L++P A+LVN RG ++D+
Sbjct: 184 EQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDE 243
Query: 1054 EALVEFLKDKKIGGAGLDVMIPE-------PLPADHPLVQLDNCVLTPHTSSATKAVRDE 1106
A++ L+ ++GG DV E P D L+ N + TPH SA +AVR E
Sbjct: 244 AAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLE 303
Query: 1107 KSSTSAENIIRGYKGE 1122
+A+NI++ GE
Sbjct: 304 IERCAAQNILQALAGE 319
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 307 LGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEAL 366
LG + V L A SDFI + L DT L+ + +L++P A+L+N RG ++D+ A+
Sbjct: 187 LGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAV 246
Query: 367 VEFLKDKKIGGAGLDVMIPEPLP-ADHP 393
+ L+ ++GG DV E AD P
Sbjct: 247 LAALERGQLGGYAADVFEMEDWARADRP 274
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 52/220 (23%), Positives = 90/220 (40%), Gaps = 45/220 (20%)
Query: 515 PKLFLTRDDYSRVPAFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDK 574
PKL +T + + ++L ++IT ++ + R+ + + R A++ DRVD
Sbjct: 3 PKLVITHRVHEEI--LQLLAPHCELIT-NQTDSTLTREEILRRCRDAQAMMAFMPDRVDA 59
Query: 575 QVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHL 634
L C E L+VI G+D+
Sbjct: 60 DFLQA-----CPE---------------------------------LRVIGCALKGFDNF 81
Query: 635 ELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGP 694
++ ARG+ + V + + AE IGLA+ + R + + SG++ Q G
Sbjct: 82 DVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQPRFYG- 140
Query: 695 NIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734
GL ATVG +G+G IGL A L+ + + + Y +R+
Sbjct: 141 --TGLDNATVGFLGMGAIGLAMADRLQGWGAT-LQYHARK 177
Score = 34.3 bits (77), Expect = 0.38, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 65 SEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKS 124
++ + R+ + + + A++ +VD + L E L+VI G D+ +D +
Sbjct: 30 TDSTLTREEILRRCRDAQAMMAFMPDRVDADFLQACPE-LRVIGCALKGFDNFDVDACTA 88
Query: 125 RGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQ 156
RG+ + V + + AE IGLA+ + R +
Sbjct: 89 RGVWLTFVPDLLTVPTAELAIGLAVGLGRHLR 120
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 122 bits (307), Expect = 9e-28, Method: Composition-based stats.
Identities = 83/256 (32%), Positives = 130/256 (50%), Gaps = 13/256 (5%)
Query: 876 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 935
L+VI G+D+ ++ ARG+ + V + + AE IGLA+ + R + +
Sbjct: 68 LRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVR 127
Query: 936 SGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGT 995
SG++ Q G GL ATVG +G+G IGL A L+ + + + Y +R+ + T
Sbjct: 128 SGQFRGWQPRFYG---TGLDNATVGFLGMGAIGLAMADRLQGWGAT-LQYHARKALDTQT 183
Query: 996 A--LGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQ 1053
LG + V L A SDFI + L DT L+ + +L++P A+LVN RG ++D+
Sbjct: 184 EQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDE 243
Query: 1054 EALVEFLKDKKIGGAGLDVMIPE-------PLPADHPLVQLDNCVLTPHTSSATKAVRDE 1106
A++ L+ ++GG DV E P D L+ N + TPH SA +AVR E
Sbjct: 244 AAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLE 303
Query: 1107 KSSTSAENIIRGYKGE 1122
+A+NI++ GE
Sbjct: 304 IERCAAQNILQALAGE 319
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 307 LGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEAL 366
LG + V L A SDFI + L DT L+ + +L++P A+L+N RG ++D+ A+
Sbjct: 187 LGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAV 246
Query: 367 VEFLKDKKIGGAGLDVMIPEPLP-ADHP 393
+ L+ ++GG DV E AD P
Sbjct: 247 LAALERGQLGGYAADVFEMEDWARADRP 274
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 52/220 (23%), Positives = 90/220 (40%), Gaps = 45/220 (20%)
Query: 515 PKLFLTRDDYSRVPAFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDK 574
PKL +T + + ++L ++IT ++ + R+ + + R A++ DRVD
Sbjct: 3 PKLVITHRVHEEI--LQLLAPHCELIT-NQTDSTLTREEILRRCRDAQAMMAFMPDRVDA 59
Query: 575 QVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHL 634
L C E L+VI G+D+
Sbjct: 60 DFLQA-----CPE---------------------------------LRVIGCALKGFDNF 81
Query: 635 ELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGP 694
++ ARG+ + V + + AE IGLA+ + R + + SG++ Q G
Sbjct: 82 DVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQPRFYG- 140
Query: 695 NIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734
GL ATVG +G+G IGL A L+ + + + Y +R+
Sbjct: 141 --TGLDNATVGFLGMGAIGLAMADRLQGWGAT-LQYHARK 177
Score = 34.3 bits (77), Expect = 0.38, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 65 SEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKS 124
++ + R+ + + + A++ +VD + L E L+VI G D+ +D +
Sbjct: 30 TDSTLTREEILRRCRDAQAMMAFMPDRVDADFLQACPE-LRVIGCALKGFDNFDVDACTA 88
Query: 125 RGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQ 156
RG+ + V + + AE IGLA+ + R +
Sbjct: 89 RGVWLTFVPDLLTVPTAELAIGLAVGLGRHLR 120
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
pdb|1GDH|B Chain B, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
Length = 320
Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 137/287 (47%), Gaps = 9/287 (3%)
Query: 845 LETAKLLKAFKVSKILYTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSV 904
+ETAK + A ++ L K + EN+K I+T+S+G+DH++L KARGI+VG+
Sbjct: 39 IETAKSVDALLIT--LNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNA 96
Query: 905 GHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEW-ALKQTHIIGPNIMGLKGATVGIVG 963
H + AE + L + +RR EG K I + W + ++G L T+GI G
Sbjct: 97 PHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEK---LDNKTLGIYG 153
Query: 964 LGNIGLETAKLLKAFKVSKILYTSRRV--KEEGTALGAQLVPLDTLCAESDFIFVTCALT 1021
G+IG AK + F + + + R +E + LD+L + S F + T
Sbjct: 154 FGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPST 213
Query: 1022 KDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPAD 1081
+T + + AI+VNT+RG L+D E +V L+ ++ AG DV EP +
Sbjct: 214 PETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NIN 272
Query: 1082 HPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128
L N L PH SA R++ + + + I + G M Y L
Sbjct: 273 EGYYDLPNTFLFPHIGSAATQAREDMAHQANDLIDALFGGADMSYAL 319
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 90/202 (44%), Gaps = 42/202 (20%)
Query: 535 EMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTEDFFGLDL 594
E +D+I + + +I D IE + ALL T ++ K+V+D
Sbjct: 20 ESYDVIAH-GDDPKITIDEMIETAKSVDALLITLNEKCRKEVID---------------- 62
Query: 595 DQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISS 654
R P +N+K I+T+S+G+DH++L KARGI+VG+ H +
Sbjct: 63 ----RIP-----------------ENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVT 101
Query: 655 DTVAEYNIGLAIAVSRRFQEGRKCITSGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIG 713
AE + L + +RR EG K I + W + ++G L T+GI G G+IG
Sbjct: 102 VATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEK---LDNKTLGIYGFGSIG 158
Query: 714 LETAKLLKAFKVSKILYTSRRV 735
AK + F + + + R
Sbjct: 159 QALAKRAQGFDMDIDYFDTHRA 180
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 8/114 (7%)
Query: 44 VPESLSKLRFNSRFDIDTYPVSEGRMPR---DIFIEKLKGCSALLCNPHQKVDKEVLDRS 100
+PE+ + R +D+ ++ G P+ D IE K ALL ++K KEV+DR
Sbjct: 10 LPEA-AMARARESYDV----IAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRI 64
Query: 101 GENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRR 154
EN+K I+T+S+G DH+ LD K+RGI+VG + AE + L + +RR
Sbjct: 65 PENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARR 118
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 314 LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDK 373
LD+L + S F + T +T + + AI++NT+RG L+D E +V L+
Sbjct: 196 LDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAG 255
Query: 374 KIGGAGLDVMIPEP 387
++ AG DV EP
Sbjct: 256 RLAYAGFDVFAGEP 269
>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant
pdb|4EBF|B Chain B, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant
pdb|4EBF|C Chain C, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant
pdb|4EBF|D Chain D, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant
pdb|4EBF|E Chain E, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant
pdb|4EBF|F Chain F, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant
Length = 334
Score = 119 bits (298), Expect = 8e-27, Method: Composition-based stats.
Identities = 80/255 (31%), Positives = 127/255 (49%), Gaps = 11/255 (4%)
Query: 876 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 935
L+VI G+D+ ++ ARG+ + V + + AE IGLA+ + R + +
Sbjct: 69 LRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVR 128
Query: 936 SGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGT 995
SG++ Q G GL ATVG +G G IGL A L+ + + + ++ + +
Sbjct: 129 SGQFRGWQPRFYG---TGLDNATVGFLGXGAIGLAXADRLQGWGATLQYHAAKALDTQTE 185
Query: 996 A-LGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQE 1054
LG + V L A SDFI + L DT L+ + +L++P A+LVN RG ++D+
Sbjct: 186 QRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEA 245
Query: 1055 ALVEFLKDKKIGGAGLDVMIPE-------PLPADHPLVQLDNCVLTPHTSSATKAVRDEK 1107
A++ L+ ++GG DV E P D L+ N + TPH SA +AVR E
Sbjct: 246 AVLAALERGQLGGYAADVFEXEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEI 305
Query: 1108 SSTSAENIIRGYKGE 1122
+A+NI++ GE
Sbjct: 306 ERCAAQNILQALAGE 320
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 307 LGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEAL 366
LG + V L A SDFI + L DT L+ + +L++P A+L+N RG ++D+ A+
Sbjct: 188 LGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAV 247
Query: 367 VEFLKDKKIGGAGLDVMIPEPLP-ADHP 393
+ L+ ++GG DV E AD P
Sbjct: 248 LAALERGQLGGYAADVFEXEDWARADRP 275
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 621 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 680
L+VI G+D+ ++ ARG+ + V + + AE IGLA+ + R + +
Sbjct: 69 LRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVR 128
Query: 681 SGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAF 723
SG++ Q G GL ATVG +G G IGL A L+ +
Sbjct: 129 SGQFRGWQPRFYG---TGLDNATVGFLGXGAIGLAXADRLQGW 168
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 65 SEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKS 124
++ + R+ + + + A +VD + L E L+VI G D+ +D +
Sbjct: 31 TDSTLTREEILRRCRDAQAXXAFXPDRVDADFLQACPE-LRVIGCALKGFDNFDVDACTA 89
Query: 125 RGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQ 156
RG+ + V + + AE IGLA+ + R +
Sbjct: 90 RGVWLTFVPDLLTVPTAELAIGLAVGLGRHLR 121
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|E Chain E, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|F Chain F, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|G Chain G, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|H Chain H, Thermostable Phosphite Dehydrogenase In Complex With Nad
Length = 330
Score = 119 bits (298), Expect = 9e-27, Method: Composition-based stats.
Identities = 80/255 (31%), Positives = 128/255 (50%), Gaps = 11/255 (4%)
Query: 876 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 935
L+VI G+D+ ++ ARG+ + V + + AE IGLA+ + R + +
Sbjct: 68 LRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVR 127
Query: 936 SGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGT 995
SG++ Q G GL ATVG +G+G IGL A L+ + + + ++ + +
Sbjct: 128 SGKFRGWQPRFYG---TGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTE 184
Query: 996 A-LGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQE 1054
LG + V L A SDFI + L DT L+ + +L++P A+LVN RG ++D+
Sbjct: 185 QRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEA 244
Query: 1055 ALVEFLKDKKIGGAGLDVMIPE-------PLPADHPLVQLDNCVLTPHTSSATKAVRDEK 1107
A++ L+ ++GG DV E P D L+ N + TPH SA +AVR E
Sbjct: 245 AVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEI 304
Query: 1108 SSTSAENIIRGYKGE 1122
+A+NI++ GE
Sbjct: 305 ERCAAQNILQALAGE 319
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 307 LGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEAL 366
LG + V L A SDFI + L DT L+ + +L++P A+L+N RG ++D+ A+
Sbjct: 187 LGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAV 246
Query: 367 VEFLKDKKIGGAGLDVMIPEPLP-ADHP 393
+ L+ ++GG DV E AD P
Sbjct: 247 LAALERGQLGGYAADVFEMEDWARADRP 274
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/209 (23%), Positives = 84/209 (40%), Gaps = 44/209 (21%)
Query: 515 PKLFLTRDDYSRVPAFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDK 574
PKL +T + + ++L ++IT ++ + R+ + + R A++ DRVD
Sbjct: 3 PKLVITHRVHEEI--LQLLAPHCELIT-NQTDSTLTREEILRRCRDAQAMMAFMPDRVDA 59
Query: 575 QVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHL 634
L C E L+VI G+D+
Sbjct: 60 DFLQA-----CPE---------------------------------LRVIGCALKGFDNF 81
Query: 635 ELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGP 694
++ ARG+ + V + + AE IGLA+ + R + + SG++ Q G
Sbjct: 82 DVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYG- 140
Query: 695 NIMGLKGATVGIVGLGNIGLETAKLLKAF 723
GL ATVG +G+G IGL A L+ +
Sbjct: 141 --TGLDNATVGFLGMGAIGLAMADRLQGW 167
Score = 34.3 bits (77), Expect = 0.38, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 65 SEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKS 124
++ + R+ + + + A++ +VD + L E L+VI G D+ +D +
Sbjct: 30 TDSTLTREEILRRCRDAQAMMAFMPDRVDADFLQACPE-LRVIGCALKGFDNFDVDACTA 88
Query: 125 RGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQ 156
RG+ + V + + AE IGLA+ + R +
Sbjct: 89 RGVWLTFVPDLLTVPTAELAIGLAVGLGRHLR 120
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And
Sulfite
pdb|4E5K|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad And
Sulfite
pdb|4E5K|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad And
Sulfite
pdb|4E5K|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad And
Sulfite
Length = 329
Score = 119 bits (298), Expect = 9e-27, Method: Composition-based stats.
Identities = 80/255 (31%), Positives = 128/255 (50%), Gaps = 11/255 (4%)
Query: 876 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 935
L+VI G+D+ ++ ARG+ + V + + AE IGLA+ + R + +
Sbjct: 68 LRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVR 127
Query: 936 SGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGT 995
SG++ Q G GL ATVG +G+G IGL A L+ + + + ++ + +
Sbjct: 128 SGKFRGWQPRFYG---TGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTE 184
Query: 996 A-LGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQE 1054
LG + V L A SDFI + L DT L+ + +L++P A+LVN RG ++D+
Sbjct: 185 QRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEA 244
Query: 1055 ALVEFLKDKKIGGAGLDVMIPE-------PLPADHPLVQLDNCVLTPHTSSATKAVRDEK 1107
A++ L+ ++GG DV E P D L+ N + TPH SA +AVR E
Sbjct: 245 AVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEI 304
Query: 1108 SSTSAENIIRGYKGE 1122
+A+NI++ GE
Sbjct: 305 ERCAAQNILQALAGE 319
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 307 LGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEAL 366
LG + V L A SDFI + L DT L+ + +L++P A+L+N RG ++D+ A+
Sbjct: 187 LGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAV 246
Query: 367 VEFLKDKKIGGAGLDVMIPEPLP-ADHP 393
+ L+ ++GG DV E AD P
Sbjct: 247 LAALERGQLGGYAADVFEMEDWARADRP 274
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/209 (23%), Positives = 84/209 (40%), Gaps = 44/209 (21%)
Query: 515 PKLFLTRDDYSRVPAFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDK 574
PKL +T + + ++L ++IT ++ + R+ + + R A++ DRVD
Sbjct: 3 PKLVITHRVHEEI--LQLLAPHCELIT-NQTDSTLTREEILRRCRDAQAMMAFMPDRVDA 59
Query: 575 QVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHL 634
L C E L+VI G+D+
Sbjct: 60 DFLQA-----CPE---------------------------------LRVIGCALKGFDNF 81
Query: 635 ELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGP 694
++ ARG+ + V + + AE IGLA+ + R + + SG++ Q G
Sbjct: 82 DVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYG- 140
Query: 695 NIMGLKGATVGIVGLGNIGLETAKLLKAF 723
GL ATVG +G+G IGL A L+ +
Sbjct: 141 --TGLDNATVGFLGMGAIGLAMADRLQGW 167
Score = 34.3 bits (77), Expect = 0.38, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 65 SEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKS 124
++ + R+ + + + A++ +VD + L E L+VI G D+ +D +
Sbjct: 30 TDSTLTREEILRRCRDAQAMMAFMPDRVDADFLQACPE-LRVIGCALKGFDNFDVDACTA 88
Query: 125 RGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQ 156
RG+ + V + + AE IGLA+ + R +
Sbjct: 89 RGVWLTFVPDLLTVPTAELAIGLAVGLGRHLR 120
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 115 bits (289), Expect = 1e-25, Method: Composition-based stats.
Identities = 80/252 (31%), Positives = 122/252 (48%), Gaps = 7/252 (2%)
Query: 871 KRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEG 930
++ +L +I VG D ++L + R I V + + +D VA+ I L +AV RR +G
Sbjct: 89 EKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDG 148
Query: 931 RKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV 990
+ + G WA + +G + KG +G++GLG IG A +AF S + Y +R
Sbjct: 149 DRLVREGRWAAGEQLPLGHSP---KGKRIGVLGLGQIGRALASRAEAFGXS-VRYWNRST 204
Query: 991 KEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGL 1050
G A P+D L +SD + V A + T+ ++ + P I+VN +RG +
Sbjct: 205 LS-GVDWIAHQSPVD-LARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNV 262
Query: 1051 LDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSST 1110
+D++AL+E LK I GAGLDV + EP N VL PH SAT R
Sbjct: 263 VDEDALIEALKSGTIAGAGLDVFVNEP-AIRSEFHTTPNTVLXPHQGSATVETRXAXGKL 321
Query: 1111 SAENIIRGYKGE 1122
N+ + GE
Sbjct: 322 VLANLAAHFAGE 333
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 309 AQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVE 368
A P+D L +SD + V A + T+ ++ + P I++N +RG ++D++AL+E
Sbjct: 212 AHQSPVD-LARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIE 270
Query: 369 FLKDKKIGGAGLDVMIPEP 387
LK I GAGLDV + EP
Sbjct: 271 ALKSGTIAGAGLDVFVNEP 289
Score = 58.2 bits (139), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 618 IKNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRK 677
+ +L +I VG D ++L + R I V + + +D VA+ I L +AV RR +G +
Sbjct: 91 LPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDGDR 150
Query: 678 CITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVS 726
+ G WA + +G + KG +G++GLG IG A +AF S
Sbjct: 151 LVREGRWAAGEQLPLGHSP---KGKRIGVLGLGQIGRALASRAEAFGXS 196
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From
Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From
Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 124/247 (50%), Gaps = 6/247 (2%)
Query: 876 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 935
LK++ VG D++++ ARG+ V + + + AE+ + L +A SR+ +
Sbjct: 67 LKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLR 126
Query: 936 SGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGT 995
W K++ G I G TVG+VGLG IG A+ + AF + Y
Sbjct: 127 EHTW--KRSSFSGTEIFG---KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAA 181
Query: 996 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEA 1055
LG +L+ LD L A +DFI V T +T LI ++ + KP I+VN +RGGL+D+ A
Sbjct: 182 QLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAA 241
Query: 1056 LVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENI 1115
L + + + AGLDV EP D PL +L V+TPH ++T +D + AE++
Sbjct: 242 LADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESV 300
Query: 1116 IRGYKGE 1122
GE
Sbjct: 301 RLALAGE 307
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
Query: 292 HYFGYN-WFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTA 350
+ Y+ + + LG +L+ LD L A +DFI V T +T LI ++ + KP
Sbjct: 167 YVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGV 226
Query: 351 ILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQL 397
I++N +RGGL+D+ AL + + + AGLDV EP D PL +L
Sbjct: 227 IIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC-TDSPLFEL 272
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 621 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 680
LK++ VG D++++ ARG+ V + + + AE+ + L +A SR+ +
Sbjct: 67 LKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLR 126
Query: 681 SGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILY 730
W K++ G I G TVG+VGLG IG A+ + AF + Y
Sbjct: 127 EHTW--KRSSFSGTEIF---GKTVGVVGLGRIGQLVAQRIAAFGAYVVAY 171
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 71 RDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRV 129
RD + + ALL VD EVL + LK++A VG D++ +D +RG+ V
Sbjct: 35 RDKLLAAVPEADALLVRSATTVDAEVL-AAAPKLKIVARAGVGLDNVDVDAATARGVLV 92
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 11/67 (16%)
Query: 832 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKTPKRTENLKVITTFSVGYDHLEL 891
G TVG+VGLG IG A+ + AF + Y + +P R L G + L L
Sbjct: 142 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAY---DPYVSPARAAQL--------GIELLSL 190
Query: 892 HEIKARG 898
++ AR
Sbjct: 191 DDLLARA 197
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 124/247 (50%), Gaps = 6/247 (2%)
Query: 876 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 935
LK++ VG D++++ ARG+ V + + + AE+ + L +A SR+ +
Sbjct: 66 LKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLR 125
Query: 936 SGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGT 995
W K++ G I G TVG+VGLG IG A+ + AF + Y
Sbjct: 126 EHTW--KRSSFSGTEIFG---KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAA 180
Query: 996 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEA 1055
LG +L+ LD L A +DFI V T +T LI ++ + KP I+VN +RGGL+D+ A
Sbjct: 181 QLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAA 240
Query: 1056 LVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENI 1115
L + + + AGLDV EP D PL +L V+TPH ++T +D + AE++
Sbjct: 241 LADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESV 299
Query: 1116 IRGYKGE 1122
GE
Sbjct: 300 RLALAGE 306
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
Query: 292 HYFGYN-WFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTA 350
+ Y+ + + LG +L+ LD L A +DFI V T +T LI ++ + KP
Sbjct: 166 YVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGV 225
Query: 351 ILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQL 397
I++N +RGGL+D+ AL + + + AGLDV EP D PL +L
Sbjct: 226 IIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC-TDSPLFEL 271
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 621 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 680
LK++ VG D++++ ARG+ V + + + AE+ + L +A SR+ +
Sbjct: 66 LKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLR 125
Query: 681 SGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILY 730
W K++ G I G TVG+VGLG IG A+ + AF + Y
Sbjct: 126 EHTW--KRSSFSGTEIF---GKTVGVVGLGRIGQLVAQRIAAFGAYVVAY 170
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 71 RDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRV 129
RD + + ALL VD EVL + LK++A VG D++ +D +RG+ V
Sbjct: 34 RDKLLAAVPEADALLVRSATTVDAEVL-AAAPKLKIVARAGVGLDNVDVDAATARGVLV 91
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 11/67 (16%)
Query: 832 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKTPKRTENLKVITTFSVGYDHLEL 891
G TVG+VGLG IG A+ + AF + Y + +P R L G + L L
Sbjct: 141 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAY---DPYVSPARAAQL--------GIELLSL 189
Query: 892 HEIKARG 898
++ AR
Sbjct: 190 DDLLARA 196
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 113 bits (283), Expect = 5e-25, Method: Composition-based stats.
Identities = 80/274 (29%), Positives = 134/274 (48%), Gaps = 17/274 (6%)
Query: 859 ILYTSRNKVKTP--KRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYN 916
I+ SR KV ++ + LK+I +G D+++ E + R I+V S+D+ E
Sbjct: 50 IVVRSRTKVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELT 109
Query: 917 IGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLK--GATVGIVGLGNIGLETAKL 974
IGL IA +R+ SG I I GL+ G T+GIVG G IG + +
Sbjct: 110 IGLMIAAARKMYTSMALAKSG---------IFKKIEGLELAGKTIGIVGFGRIGTKVGII 160
Query: 975 LKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFS 1034
A + + Y ++E+ + A+ V L+ L SD I + ++KD + +I QF
Sbjct: 161 ANAMGMKVLAYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFE 220
Query: 1035 LMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADH---PLVQLDNCV 1091
LMK I+VNTSR ++ +AL++++K K+ DV EP P + L++ + +
Sbjct: 221 LMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEP-PKEEWELELLKHERVI 279
Query: 1092 LTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMI 1125
+T H + TK + + + +N++ K MI
Sbjct: 280 VTTHIGAQTKEAQKRVAEMTTQNLLNAMKELGMI 313
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678
K LK+I +G D+++ E + R I+V S+D+ E IGL IA +R+
Sbjct: 67 KKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMAL 126
Query: 679 ITSGEWALKQTHIIGPNIMGLK--GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK 736
SG I I GL+ G T+GIVG G IG + + A + + Y ++
Sbjct: 127 AKSG---------IFKKIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIR 177
Query: 737 EEGQLFSLVYDFCRYSIGGVTIKRLVKKTFILSF 770
E+ + + + V+++ L+K + ++S
Sbjct: 178 EKAE---------KINAKAVSLEELLKNSDVISL 202
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 47/87 (54%)
Query: 301 RSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGL 360
R + A+ V L+ L SD I + ++KD + +I QF LMK I++NTSR
Sbjct: 177 REKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVA 236
Query: 361 LDQEALVEFLKDKKIGGAGLDVMIPEP 387
++ +AL++++K K+ DV EP
Sbjct: 237 VNGKALLDYIKKGKVYAYATDVFWNEP 263
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 91 KVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIA 150
KV K+V+++ G+ LK+IA +G D++ +E + R I+V S+D+ E IGL IA
Sbjct: 57 KVTKDVIEK-GKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIA 115
Query: 151 VSRR 154
+R+
Sbjct: 116 AARK 119
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase
pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase
Length = 335
Score = 113 bits (283), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 123/253 (48%), Gaps = 10/253 (3%)
Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933
E L+V+ G D+++L +GI V + + +S + AE G+ + ++R+ +
Sbjct: 88 EKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATAS 147
Query: 934 ITSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK 991
+ G+W K+ MG L G T+GI+GLG IG E A +++F + I Y
Sbjct: 148 MKDGKWERKK-------FMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP 200
Query: 992 EEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLL 1051
E + G Q +PL+ + DFI V L T L+ F+ K +VN +RGG++
Sbjct: 201 EVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIV 260
Query: 1052 DQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111
D+ AL+ L+ + GA LDV EP P D LV +N + PH ++TK +
Sbjct: 261 DEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHENVISCPHLGASTKEAQSRCGEEI 319
Query: 1112 AENIIRGYKGEPM 1124
A + KG+ +
Sbjct: 320 AVQFVDMVKGKSL 332
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365
+ G Q +PL+ + DFI V L T L+ F+ K ++N +RGG++D+ A
Sbjct: 205 SFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGA 264
Query: 366 LVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399
L+ L+ + GA LDV EP P D LV +N
Sbjct: 265 LLRALQSGQCAGAALDVFTEEP-PRDRALVDHEN 297
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 9/114 (7%)
Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678
+ L+V+ G D+++L +GI V + + +S + AE G+ + ++R+ +
Sbjct: 88 EKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATAS 147
Query: 679 ITSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILY 730
+ G+W K+ MG L G T+GI+GLG IG E A +++F + I Y
Sbjct: 148 MKDGKWERKK-------FMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGY 194
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 20/85 (23%)
Query: 812 NGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKT 869
+G+W K+ MG L G T+GI+GLG IG E A +++F + I Y + + +
Sbjct: 150 DGKWERKK-------FMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGY---DPIIS 199
Query: 870 PKRTENLKVITTFSVGYDHLELHEI 894
P+ + S G L L EI
Sbjct: 200 PE--------VSASFGVQQLPLEEI 216
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas
Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas
Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas
Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas
Sp. Js6 66
Length = 345
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 120/257 (46%), Gaps = 15/257 (5%)
Query: 857 SKILYTSRNKVKTP----KRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTV 912
+++L+ + + T K LK I T SVGYDH++ ++ GI+V + SD
Sbjct: 72 AEVLFVTATEAITAEVIRKLQPGLKTIATLSVGYDHIDXAAARSLGIKVLHTPDVLSDAC 131
Query: 913 AEYNIGLAIAVSRRFQEGRKCITSGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLET 971
AE L + RR E + + SG W T ++G GL G +GI G G IG
Sbjct: 132 AEIAXLLVLNACRRGYEADRXVRSGSWPGWGPTQLLG---XGLTGRRLGIFGXGRIGRAI 188
Query: 972 AKLLKAFKVSKILYTSRRVK---EEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLI 1028
A + F ++ + R+ EEG L D+L SD + + + +
Sbjct: 189 ATRARGFGLAIHYHNRTRLSHALEEGAIYHDTL---DSLLGASDIFLIAAPGRPELKGFL 245
Query: 1029 GRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLD 1088
+ + + A+++N SRG L++ +AL+E L+ K + AGLDV EP D LD
Sbjct: 246 DHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEP-AIDPRYRSLD 304
Query: 1089 NCVLTPHTSSATKAVRD 1105
N LTPH SAT RD
Sbjct: 305 NIFLTPHIGSATHETRD 321
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 7/135 (5%)
Query: 617 LIKNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGR 676
L LK I T SVGYDH++ ++ GI+V + SD AE L + RR E
Sbjct: 91 LQPGLKTIATLSVGYDHIDXAAARSLGIKVLHTPDVLSDACAEIAXLLVLNACRRGYEAD 150
Query: 677 KCITSGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV 735
+ + SG W T ++G GL G +GI G G IG A + F ++ + R+
Sbjct: 151 RXVRSGSWPGWGPTQLLG---XGLTGRRLGIFGXGRIGRAIATRARGFGLAIHYHNRTRL 207
Query: 736 K---EEGQLFSLVYD 747
EEG ++ D
Sbjct: 208 SHALEEGAIYHDTLD 222
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 314 LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDK 373
LD+L SD + + + + + + + A++IN SRG L++ +AL+E L+ K
Sbjct: 221 LDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSK 280
Query: 374 KIGGAGLDVMIPEP 387
+ AGLDV EP
Sbjct: 281 HLFAAGLDVFANEP 294
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Query: 41 RLLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRS 100
R P ++LR RFD++ P I + G L + + EV+ +
Sbjct: 35 RRFTPAIEAELR--QRFDLEVNLEDTVLTPSGI-ASRAHGAEVLFVTATEAITAEVIRKL 91
Query: 101 GENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRR 154
LK IAT SVG+DH+ +S GI+V V SD AE L + RR
Sbjct: 92 QPGLKTIATLSVGYDHIDXAAARSLGIKVLHTPDVLSDACAEIAXLLVLNACRR 145
>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella
Sp.c2 In Complex With Nad And Azide
Length = 402
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 124/266 (46%), Gaps = 11/266 (4%)
Query: 862 TSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAI 921
T+ K PK LK+ T +G DH++L I V V + +S++VAE+ + + +
Sbjct: 105 TAERIAKAPK----LKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVL 160
Query: 922 AVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVS 981
+ R + +G W + ++ G+ VG V G IGL +LL F +
Sbjct: 161 GLVRNYIPSHDWARNGGWNIADCVARSYDVEGMH---VGTVAAGRIGLRVLRLLAPFDM- 216
Query: 982 KILYTSRRVKEEGTALGAQLVPLDT---LCAESDFIFVTCALTKDTEQLIGRKQFSLMKP 1038
+ YT R E L T + D + + C L +TE +I + L K
Sbjct: 217 HLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKR 276
Query: 1039 TAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSS 1098
A LVNT+RG L D++A+V L+ ++ G DV P+P P DHP + + +TPH S
Sbjct: 277 GAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGMTPHISG 336
Query: 1099 ATKAVRDEKSSTSAENIIRGYKGEPM 1124
+ + + ++ + E + ++G P+
Sbjct: 337 TSLSAQTRYAAGTREILECYFEGRPI 362
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 322 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLD 381
D + + C L +TE +I + L K A L+NT+RG L D++A+V L+ ++ G D
Sbjct: 250 DVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGD 309
Query: 382 VMIPEPLPADHPLVQLDNCG 401
V P+P P DHP + + G
Sbjct: 310 VWFPQPAPNDHPWRTMPHNG 329
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 621 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 680
LK+ T +G DH++L I V V + +S++VAE+ + + + + R +
Sbjct: 115 LKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWAR 174
Query: 681 SGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733
+G W + ++ G+ VG V G IGL +LL F + + YT R
Sbjct: 175 NGGWNIADCVARSYDVEGMH---VGTVAAGRIGLRVLRLLAPFDM-HLHYTDR 223
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 104 LKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIA 163
LK+ T +G DH+ L I V V +S++VAE+ + + + + R + H+W A
Sbjct: 115 LKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDW-A 173
Query: 164 RLSSF--AEIQTRALDTK 179
R + A+ R+ D +
Sbjct: 174 RNGGWNIADCVARSYDVE 191
>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From
Bacterium Moraxella Sp.c-1 In Closed Conformation
Length = 401
Score = 110 bits (276), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 124/266 (46%), Gaps = 11/266 (4%)
Query: 862 TSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAI 921
T+ K PK LK+ T +G DH++L I V V + +S++VAE+ + + +
Sbjct: 104 TAERIAKAPK----LKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVL 159
Query: 922 AVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVS 981
+ R + +G W + ++ G+ VG V G IGL +LL F +
Sbjct: 160 GLVRNYIPSHDWARNGGWNIADCVARSYDVEGMH---VGTVAAGRIGLRVLRLLAPFDM- 215
Query: 982 KILYTSRRVKEEGTALGAQLVPLDT---LCAESDFIFVTCALTKDTEQLIGRKQFSLMKP 1038
+ YT R E L T + D + + C L +TE +I + L K
Sbjct: 216 HLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKR 275
Query: 1039 TAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSS 1098
A LVNT+RG L D++A+V L+ ++ G DV P+P P DHP + + +TPH S
Sbjct: 276 GAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGMTPHISG 335
Query: 1099 ATKAVRDEKSSTSAENIIRGYKGEPM 1124
+ + + ++ + E + ++G P+
Sbjct: 336 TSLSAQTRYAAGTREILECYFEGRPI 361
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 322 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLD 381
D + + C L +TE +I + L K A L+NT+RG L D++A+V L+ ++ G D
Sbjct: 249 DVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGD 308
Query: 382 VMIPEPLPADHPLVQLDNCG 401
V P+P P DHP + + G
Sbjct: 309 VWFPQPAPNDHPWRTMPHNG 328
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 621 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 680
LK+ T +G DH++L I V V + +S++VAE+ + + + + R +
Sbjct: 114 LKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWAR 173
Query: 681 SGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733
+G W + ++ G+ VG V G IGL +LL F + + YT R
Sbjct: 174 NGGWNIADCVARSYDVEGMH---VGTVAAGRIGLRVLRLLAPFDM-HLHYTDR 222
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 104 LKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIA 163
LK+ T +G DH+ L I V V +S++VAE+ + + + + R + H+W A
Sbjct: 114 LKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDW-A 172
Query: 164 RLSSF--AEIQTRALDTK 179
R + A+ R+ D +
Sbjct: 173 RNGGWNIADCVARSYDVE 190
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid
Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid
Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid
Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid
Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid
Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid
Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid
Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid
Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid
Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid
Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid
Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid
Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 121/245 (49%), Gaps = 7/245 (2%)
Query: 881 TFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWA 940
T +G DH++L A G+ V V + +VAE + + + R F G + GEW
Sbjct: 92 TAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWN 151
Query: 941 LKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR--RVKEEGTALG 998
+ I L+G T+G VG G IG + LK F + +LY R E G
Sbjct: 152 VAG---IAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCN-LLYHDRLQMAPELEKETG 207
Query: 999 AQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALV 1057
A+ V L+ + + D I + LT+ T + ++ +K ++VN +RG +++++A+V
Sbjct: 208 AKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVV 267
Query: 1058 EFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIR 1117
+ ++ IGG DV P+P P DHP + N +TPHTS T + ++ + + + R
Sbjct: 268 DAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLER 327
Query: 1118 GYKGE 1122
+KGE
Sbjct: 328 YFKGE 332
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 308 GAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEAL 366
GA+ V L+ + + D I + LT+ T + ++ +K +++N +RG +++++A+
Sbjct: 207 GAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAV 266
Query: 367 VEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399
V+ ++ IGG DV P+P P DHP + N
Sbjct: 267 VDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPN 299
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 626 TFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWA 685
T +G DH++L A G+ V V + +VAE + + + R F G + GEW
Sbjct: 92 TAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWN 151
Query: 686 LKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733
+ I L+G T+G VG G IG + LK F + +LY R
Sbjct: 152 VAG---IAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCN-LLYHDR 195
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 807 YHGTINGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 864
Y+ + GEW + I L+G T+G VG G IG + LK F + +LY R
Sbjct: 142 YNQVVKGEWNVAG---IAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCN-LLYHDR 195
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 121/245 (49%), Gaps = 7/245 (2%)
Query: 881 TFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWA 940
T +G DH++L A G+ V V + +VAE + + + R F G + GEW
Sbjct: 98 TAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWN 157
Query: 941 LKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR--RVKEEGTALG 998
+ I L+G T+G VG G IG + LK F + +LY R E G
Sbjct: 158 VAG---IAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCN-LLYHDRLQMAPELEKETG 213
Query: 999 AQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALV 1057
A+ V L+ + + D I + LT+ T + ++ +K ++VN +RG +++++A+V
Sbjct: 214 AKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVV 273
Query: 1058 EFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIR 1117
+ ++ IGG DV P+P P DHP + N +TPHTS T + ++ + + + R
Sbjct: 274 DAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLER 333
Query: 1118 GYKGE 1122
+KGE
Sbjct: 334 YFKGE 338
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 308 GAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEAL 366
GA+ V L+ + + D I + LT+ T + ++ +K +++N +RG +++++A+
Sbjct: 213 GAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAV 272
Query: 367 VEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399
V+ ++ IGG DV P+P P DHP + N
Sbjct: 273 VDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPN 305
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 626 TFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWA 685
T +G DH++L A G+ V V + +VAE + + + R F G + GEW
Sbjct: 98 TAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWN 157
Query: 686 LKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733
+ I L+G T+G VG G IG + LK F + +LY R
Sbjct: 158 VAG---IAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCN-LLYHDR 201
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 807 YHGTINGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 864
Y+ + GEW + I L+G T+G VG G IG + LK F + +LY R
Sbjct: 148 YNQVVKGEWNVAG---IAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCN-LLYHDR 201
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101
In Complex With Formate
pdb|2GUG|B Chain B, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101
In Complex With Formate
pdb|2GUG|C Chain C, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101
In Complex With Formate
pdb|2GUG|D Chain D, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101
In Complex With Formate
Length = 401
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 126/268 (47%), Gaps = 22/268 (8%)
Query: 869 TPKR---TENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSR 925
TP+R +NLK+ T +G DH++L R + V V + +S +VAE+ + + +++ R
Sbjct: 105 TPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVR 164
Query: 926 RFQEGRKCITSGEWALKQTHIIGPNI---MGLKGATVGIVGLGNIGLETAKLLKAFKVSK 982
+ + S EWA K I + L+ VG V G IGL + L F V
Sbjct: 165 NY------LPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV-H 217
Query: 983 ILYTSRR------VKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLM 1036
+ YT R KE A + +C D + + C L +TE +I + L
Sbjct: 218 LHYTDRHRLPESVEKELNLTWHATREDMYPVC---DVVTLNCPLHPETEHMINDETLKLF 274
Query: 1037 KPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHT 1096
K A +VNT+RG L D++A+ L+ ++ G DV P+P P DHP + +TPH
Sbjct: 275 KRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHI 334
Query: 1097 SSATKAVRDEKSSTSAENIIRGYKGEPM 1124
S T + ++ + E + ++G P+
Sbjct: 335 SGTTLTAQARYAAGTREILEXFFEGRPI 362
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 322 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLD 381
D + + C L +TE +I + L K A ++NT+RG L D++A+ L+ ++ G D
Sbjct: 250 DVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGD 309
Query: 382 VMIPEPLPADHP 393
V P+P P DHP
Sbjct: 310 VWFPQPAPKDHP 321
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 10/118 (8%)
Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678
KNLK+ T +G DH++L R + V V + +S +VAE+ + + +++ R +
Sbjct: 113 KNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNY------ 166
Query: 679 ITSGEWALKQTHIIGPNI---MGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733
+ S EWA K I + L+ VG V G IGL + L F V + YT R
Sbjct: 167 LPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDR 223
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 101 GENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHN 160
+NLK+ T +G DH+ L R + V V +S +VAE+ + + +++ R + H
Sbjct: 112 AKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHE 171
Query: 161 W 161
W
Sbjct: 172 W 172
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101
Length = 401
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 126/268 (47%), Gaps = 22/268 (8%)
Query: 869 TPKR---TENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSR 925
TP+R +NLK+ T +G DH++L R + V V + +S +VAE+ + + +++ R
Sbjct: 105 TPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVR 164
Query: 926 RFQEGRKCITSGEWALKQTHIIGPNI---MGLKGATVGIVGLGNIGLETAKLLKAFKVSK 982
+ + S EWA K I + L+ VG V G IGL + L F V
Sbjct: 165 NY------LPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV-H 217
Query: 983 ILYTSRR------VKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLM 1036
+ YT R KE A + +C D + + C L +TE +I + L
Sbjct: 218 LHYTDRHRLPESVEKELNLTWHATREDMYPVC---DVVTLNCPLHPETEHMINDETLKLF 274
Query: 1037 KPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHT 1096
K A +VNT+RG L D++A+ L+ ++ G DV P+P P DHP + +TPH
Sbjct: 275 KRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHI 334
Query: 1097 SSATKAVRDEKSSTSAENIIRGYKGEPM 1124
S T + ++ + E + ++G P+
Sbjct: 335 SGTTLTAQARYAAGTREILECFFEGRPI 362
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 322 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLD 381
D + + C L +TE +I + L K A ++NT+RG L D++A+ L+ ++ G D
Sbjct: 250 DVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGD 309
Query: 382 VMIPEPLPADHP 393
V P+P P DHP
Sbjct: 310 VWFPQPAPKDHP 321
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 10/118 (8%)
Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678
KNLK+ T +G DH++L R + V V + +S +VAE+ + + +++ R +
Sbjct: 113 KNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNY------ 166
Query: 679 ITSGEWALKQTHIIGPNI---MGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733
+ S EWA K I + L+ VG V G IGL + L F V + YT R
Sbjct: 167 LPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDR 223
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 101 GENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHN 160
+NLK+ T +G DH+ L R + V V +S +VAE+ + + +++ R + H
Sbjct: 112 AKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHE 171
Query: 161 W 161
W
Sbjct: 172 W 172
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAC|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
Length = 393
Score = 107 bits (267), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 126/268 (47%), Gaps = 22/268 (8%)
Query: 869 TPKR---TENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSR 925
TP+R +NLK+ T +G DH++L R + V V + +S +VAE+ + + +++ R
Sbjct: 104 TPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVR 163
Query: 926 RFQEGRKCITSGEWALKQTHIIGPNI---MGLKGATVGIVGLGNIGLETAKLLKAFKVSK 982
+ + S EWA K I + L+ VG V G IGL + L F V
Sbjct: 164 NY------LPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV-H 216
Query: 983 ILYTSRR------VKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLM 1036
+ YT R KE A + +C D + + C L +TE +I + L
Sbjct: 217 LHYTDRHRLPESVEKELNLTWHATREDMYPVC---DVVTLNCPLHPETEHMINDETLKLF 273
Query: 1037 KPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHT 1096
K A +VNT+RG L D++A+ L+ ++ G DV P+P P DHP + +TPH
Sbjct: 274 KRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHI 333
Query: 1097 SSATKAVRDEKSSTSAENIIRGYKGEPM 1124
S T + ++ + E + ++G P+
Sbjct: 334 SGTTLTAQARYAAGTREILECFFEGRPI 361
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 322 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLD 381
D + + C L +TE +I + L K A ++NT+RG L D++A+ L+ ++ G D
Sbjct: 249 DVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGD 308
Query: 382 VMIPEPLPADHP 393
V P+P P DHP
Sbjct: 309 VWFPQPAPKDHP 320
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 10/118 (8%)
Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678
KNLK+ T +G DH++L R + V V + +S +VAE+ + + +++ R +
Sbjct: 112 KNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNY------ 165
Query: 679 ITSGEWALKQTHIIGPNI---MGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733
+ S EWA K I + L+ VG V G IGL + L F V + YT R
Sbjct: 166 LPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDR 222
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 101 GENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHN 160
+NLK+ T +G DH+ L R + V V +S +VAE+ + + +++ R + H
Sbjct: 111 AKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHE 170
Query: 161 W 161
W
Sbjct: 171 W 171
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|B Chain B, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|C Chain C, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|D Chain D, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|E Chain E, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|F Chain F, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|G Chain G, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|H Chain H, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
Length = 336
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 116/250 (46%), Gaps = 4/250 (1%)
Query: 876 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 935
L+VI GYD++++ GI V ++ + + A+ I + + RR + +
Sbjct: 70 LRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALR 129
Query: 936 SGE--WALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 993
G +++Q + ++G T+G++G G G A KAF S I Y
Sbjct: 130 EGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGI 189
Query: 994 GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052
+LG Q V L L +SD + + C L + LI M+ A LVN +RGGL+D
Sbjct: 190 ERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVD 249
Query: 1053 QEALVEFLKDKKIGGAGLDVMIPEPLP-ADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111
++AL + LK+ +I GA LDV EP A PL N + TPHT+ ++ E +
Sbjct: 250 EKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAA 309
Query: 1112 AENIIRGYKG 1121
A I R G
Sbjct: 310 ATEIRRAITG 319
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 306 ALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQE 364
+LG Q V L L +SD + + C L + LI M+ A L+N +RGGL+D++
Sbjct: 192 SLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEK 251
Query: 365 ALVEFLKDKKIGGAGLDVMIPEPLP-ADHPL 394
AL + LK+ +I GA LDV EP A PL
Sbjct: 252 ALAQALKEGRIRGAALDVHESEPFSFAQGPL 282
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678
K L+VI GYD++++ GI V ++ + + A+ I + + RR +
Sbjct: 68 KALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRNTWLYQA 127
Query: 679 ITSGE--WALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILY 730
+ G +++Q + ++G T+G++G G G A KAF S I Y
Sbjct: 128 LREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFY 181
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 816 ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILY 861
+++Q + ++G T+G++G G G A KAF S I Y
Sbjct: 136 SVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFY 181
>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form
Length = 347
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 117/250 (46%), Gaps = 4/250 (1%)
Query: 876 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 935
L++I G+D++++ GI V +V S + A+ + + + RR + +
Sbjct: 86 LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALR 145
Query: 936 SGE--WALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 993
G +++Q + ++G T+GI+GLG +G A KAF + + Y
Sbjct: 146 EGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV 205
Query: 994 GTALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052
ALG Q V L L SD + + C L + LI M+ A LVNT+RGGL+D
Sbjct: 206 ERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVD 265
Query: 1053 QEALVEFLKDKKIGGAGLDVMIPEPLP-ADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111
++AL + LK+ +I GA LDV EP + PL N + TPH + ++ E +
Sbjct: 266 EKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEA 325
Query: 1112 AENIIRGYKG 1121
A I R G
Sbjct: 326 AREIRRAITG 335
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 294 FGYN------WFERSNGTALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLM 346
FG+N + ALG Q V L L SD + + C L + LI M
Sbjct: 190 FGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQM 249
Query: 347 KPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL 388
+ A L+NT+RGGL+D++AL + LK+ +I GA LDV EP
Sbjct: 250 RQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPF 291
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678
K L++I G+D++++ GI V +V S + A+ + + + RR +
Sbjct: 84 KALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQA 143
Query: 679 ITSGE--WALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILY 730
+ G +++Q + ++G T+GI+GLG +G A KAF + + Y
Sbjct: 144 LREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFY 197
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 816 ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILY 861
+++Q + ++G T+GI+GLG +G A KAF + + Y
Sbjct: 152 SVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFY 197
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription
Corepression And Golgi Membrane Fission
Length = 358
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 117/250 (46%), Gaps = 4/250 (1%)
Query: 876 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 935
L++I G+D++++ GI V +V S + A+ + + + RR + +
Sbjct: 89 LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALR 148
Query: 936 SGE--WALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 993
G +++Q + ++G T+GI+GLG +G A KAF + + Y
Sbjct: 149 EGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGI 208
Query: 994 GTALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052
ALG Q V L L SD + + C L + LI M+ A LVNT+RGGL+D
Sbjct: 209 ERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVD 268
Query: 1053 QEALVEFLKDKKIGGAGLDVMIPEPLP-ADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111
++AL + LK+ +I GA LDV EP + PL N + TPH + ++ E +
Sbjct: 269 EKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEA 328
Query: 1112 AENIIRGYKG 1121
A I R G
Sbjct: 329 AREIRRAITG 338
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 294 FGYN------WFERSNGTALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLM 346
FG+N + ALG Q V L L SD + + C L + LI M
Sbjct: 193 FGFNVLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQM 252
Query: 347 KPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL 388
+ A L+NT+RGGL+D++AL + LK+ +I GA LDV EP
Sbjct: 253 RQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPF 294
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678
K L++I G+D++++ GI V +V S + A+ + + + RR +
Sbjct: 87 KALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQA 146
Query: 679 ITSGE--WALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILY 730
+ G +++Q + ++G T+GI+GLG +G A KAF + + Y
Sbjct: 147 LREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFY 200
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 816 ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILY 861
+++Q + ++G T+GI+GLG +G A KAF + + Y
Sbjct: 155 SVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFY 200
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE
pdb|2HU2|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL
Peptide
Length = 358
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 117/250 (46%), Gaps = 4/250 (1%)
Query: 876 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 935
L++I G+D++++ GI V +V S + A+ + + + RR + +
Sbjct: 89 LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALR 148
Query: 936 SGE--WALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 993
G +++Q + ++G T+GI+GLG +G A KAF + + Y
Sbjct: 149 EGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGI 208
Query: 994 GTALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052
ALG Q V L L SD + + C L + LI M+ A LVNT+RGGL+D
Sbjct: 209 ERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVD 268
Query: 1053 QEALVEFLKDKKIGGAGLDVMIPEPLP-ADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111
++AL + LK+ +I GA LDV EP + PL N + TPH + ++ E +
Sbjct: 269 EKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEA 328
Query: 1112 AENIIRGYKG 1121
A I R G
Sbjct: 329 AREIRRAITG 338
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 294 FGYN------WFERSNGTALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLM 346
FG+N + ALG Q V L L SD + + C L + LI M
Sbjct: 193 FGFNVLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQM 252
Query: 347 KPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL 388
+ A L+NT+RGGL+D++AL + LK+ +I GA LDV EP
Sbjct: 253 RQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPF 294
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678
K L++I G+D++++ GI V +V S + A+ + + + RR +
Sbjct: 87 KALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQA 146
Query: 679 ITSGE--WALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILY 730
+ G +++Q + ++G T+GI+GLG +G A KAF + + Y
Sbjct: 147 LREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFY 200
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 816 ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILY 861
+++Q + ++G T+GI+GLG +G A KAF + + Y
Sbjct: 155 SVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFY 200
>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
From Brucella Melitensis
Length = 416
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 128/268 (47%), Gaps = 14/268 (5%)
Query: 845 LETAKLLKAFKVSKIL-YTSRNKVKTP--KRTENLKVITTFSVGYDHLELHEIKARGIRV 901
L+ A L+KA + I+ SR ++ L + FSVG + +EL + RGI V
Sbjct: 47 LDKADLIKAISSAHIIGIRSRTQLTEEIFAAANRLIAVGCFSVGTNQVELKAARKRGIPV 106
Query: 902 GSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGI 961
+ ++ +VAE IG I + RR +G W ++T I + +G T+GI
Sbjct: 107 FNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGW--EKTAIGSREV---RGKTLGI 161
Query: 962 VGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALT 1021
VG GNIG + L ++ ++ Y + + G A LD L SD + + +
Sbjct: 162 VGYGNIGSQVGNLAESLGMTVRYYDTSDKLQYGNVKPA--ASLDELLKTSDVVSLHVPSS 219
Query: 1022 KDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPAD 1081
K T +LI + MK A L+N +RG +D EAL + L++ + GA +DV EP
Sbjct: 220 KSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNG 279
Query: 1082 H----PLVQLDNCVLTPHTSSATKAVRD 1105
PL L+N +LTPH +T+ ++
Sbjct: 280 ERFSTPLQGLENVILTPHIGGSTEEAQE 307
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 314 LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDK 373
LD L SD + + +K T +LI + MK A LIN +RG +D EAL + L++
Sbjct: 202 LDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEG 261
Query: 374 KIGGAGLDVMIPEPLPADH----PLVQLDNC 400
+ GA +DV EP PL L+N
Sbjct: 262 HLAGAAIDVFPVEPASNGERFSTPLQGLENV 292
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 83/182 (45%), Gaps = 21/182 (11%)
Query: 565 LCTSRDRVDKQVLD----------ESGGY-RCTEDFFGLDLDQMFRNPSKRHV-NIETVL 612
L SRDR++ +L+ +S GY T LD + + S H+ I +
Sbjct: 9 LSLSRDRINVLLLEGISQTAVEYFKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRT 68
Query: 613 GVS---FLIKN-LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAV 668
++ F N L + FSVG + +EL + RGI V + ++ +VAE IG I +
Sbjct: 69 QLTEEIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIML 128
Query: 669 SRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKI 728
RR +G W ++T I + +G T+GIVG GNIG + L ++ ++
Sbjct: 129 MRRIFPRSVSAHAGGW--EKTAIGSREV---RGKTLGIVGYGNIGSQVGNLAESLGMTVR 183
Query: 729 LY 730
Y
Sbjct: 184 YY 185
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 830 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVK 868
++G T+GIVG GNIG + L ++ ++ Y + +K++
Sbjct: 154 VRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ 192
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant
Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double Mutant
Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 99.8 bits (247), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 111/237 (46%), Gaps = 11/237 (4%)
Query: 873 TENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRK 932
E L I F++G + ++L RGI V + ++ +VAE IG + + R E
Sbjct: 73 AEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANA 132
Query: 933 CITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 992
G W + + +G +GI+G G+IG + L ++ + Y
Sbjct: 133 KAHRGVW-----NKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP 187
Query: 993 EGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052
G A Q+ L L SD + + T+ ++G K+ SLMKP ++L+N SRG ++D
Sbjct: 188 LGNA--TQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVD 245
Query: 1053 QEALVEFLKDKKIGGAGLDVMIPEPL----PADHPLVQLDNCVLTPHTSSATKAVRD 1105
AL + L K + GA +DV EP P PL + DN +LTPH +T+ ++
Sbjct: 246 IPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQE 302
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 298 WFERSNGTALG--AQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT 355
+++ N LG Q+ L L SD + + T+ ++G K+ SLMKP ++LIN
Sbjct: 179 FYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINA 238
Query: 356 SRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL----PADHPLVQLDNC 400
SRG ++D AL + L K + GA +DV EP P PL + DN
Sbjct: 239 SRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNV 287
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678
+ L I F++G + ++L RGI V + ++ +VAE IG + + R E
Sbjct: 74 EKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAK 133
Query: 679 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILY 730
G W + + +G +GI+G G+IG + L ++ + Y
Sbjct: 134 AHRGVW-----NKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFY 180
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9C|B Chain B, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|A Chain A, Crystal Structure Of G336v Mutant Of E.Coli Phosphoglycerate
Dehydrogenase
pdb|2P9E|B Chain B, Crystal Structure Of G336v Mutant Of E.Coli Phosphoglycerate
Dehydrogenase
pdb|2P9E|C Chain C, Crystal Structure Of G336v Mutant Of E.Coli Phosphoglycerate
Dehydrogenase
pdb|2P9E|D Chain D, Crystal Structure Of G336v Mutant Of E.Coli Phosphoglycerate
Dehydrogenase
pdb|2PA3|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
Length = 410
Score = 99.8 bits (247), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 111/237 (46%), Gaps = 11/237 (4%)
Query: 873 TENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRK 932
E L I F++G + ++L RGI V + ++ +VAE IG + + R E
Sbjct: 73 AEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANA 132
Query: 933 CITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 992
G W + + +G +GI+G G+IG + L ++ + Y
Sbjct: 133 KAHRGVW-----NKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP 187
Query: 993 EGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052
G A Q+ L L SD + + T+ ++G K+ SLMKP ++L+N SRG ++D
Sbjct: 188 LGNA--TQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVD 245
Query: 1053 QEALVEFLKDKKIGGAGLDVMIPEPL----PADHPLVQLDNCVLTPHTSSATKAVRD 1105
AL + L K + GA +DV EP P PL + DN +LTPH +T+ ++
Sbjct: 246 IPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQE 302
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 298 WFERSNGTALG--AQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT 355
+++ N LG Q+ L L SD + + T+ ++G K+ SLMKP ++LIN
Sbjct: 179 FYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINA 238
Query: 356 SRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL----PADHPLVQLDNC 400
SRG ++D AL + L K + GA +DV EP P PL + DN
Sbjct: 239 SRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNV 287
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678
+ L I F++G + ++L RGI V + ++ +VAE IG + + R E
Sbjct: 74 EKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAK 133
Query: 679 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILY 730
G W + + +G +GI+G G+IG + L ++ + Y
Sbjct: 134 AHRGVW-----NKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFY 180
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 113/229 (49%), Gaps = 11/229 (4%)
Query: 897 RGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKG 956
R ++ +V I ++EY G +++ R+ R+ W Q+H GLKG
Sbjct: 88 RDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLW---QSH----PYQGLKG 140
Query: 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIF 1015
T+ I+G G+IG A K F + K+L SR +E G QL L+ + A++D I
Sbjct: 141 RTLLILGTGSIGQHIAHTGKHFGM-KVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIV 199
Query: 1016 VTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIP 1075
T++T L +F KP AIL N RG +++ L+ L+ K+G A LDV
Sbjct: 200 SVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQ 259
Query: 1076 EPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPM 1124
EPLPAD PL N ++TPH S+ + D+ + N IR G+P+
Sbjct: 260 EPLPADSPLWGQPNLIITPHNSAYS--FPDDVAQIFVRNYIRFIDGQPL 306
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%)
Query: 310 QLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEF 369
QL L+ + A++D I T++T L +F KP AIL N RG +++ L+
Sbjct: 184 QLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTA 243
Query: 370 LKDKKIGGAGLDVMIPEPLPADHPL 394
L+ K+G A LDV EPLPAD PL
Sbjct: 244 LRTGKLGMAVLDVFEQEPLPADSPL 268
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 642 RGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKG 701
R ++ +V I ++EY G +++ R+ R+ W Q+H GLKG
Sbjct: 88 RDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLW---QSH----PYQGLKG 140
Query: 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGQLFSLVYDF 748
T+ I+G G+IG A K F + K+L SR +E F VY
Sbjct: 141 RTLLILGTGSIGQHIAHTGKHFGM-KVLGVSRSGRERAG-FDQVYQL 185
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 120/250 (48%), Gaps = 16/250 (6%)
Query: 861 YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSD--TVAEYNIG 918
Y ++ ++ K+ LK++ VG DH++L I G ++ + S+ +VAE+ +
Sbjct: 73 YITKERIDKAKK---LKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVM 129
Query: 919 LAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAF 978
+ + R F + I + +W + I + ++G T+ +G G IG + L F
Sbjct: 130 TMLVLVRNFVPAHEQIINHDW---EVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPF 186
Query: 979 KVSKILYTSRRV--KEEGTALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSL 1035
++LY + K+ +GA+ V ++ L A++D + V L T+ LI ++ S
Sbjct: 187 NPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSK 246
Query: 1036 MKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN-----C 1090
K A LVNT+RG + E + L+ ++ G G DV P+P P DHP + N
Sbjct: 247 FKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGN 306
Query: 1091 VLTPHTSSAT 1100
+TPH S T
Sbjct: 307 AMTPHYSGTT 316
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 73/155 (47%), Gaps = 8/155 (5%)
Query: 293 YFGYNWFERSNGTALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAI 351
Y+ Y + +GA+ V ++ L A++D + V L T+ LI ++ S K A
Sbjct: 193 YYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAW 252
Query: 352 LINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPE 411
L+NT+RG + E + L+ ++ G G DV P+P P DHP + N GAG + M P
Sbjct: 253 LVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAG-NAMTPH 311
Query: 412 ----PLPADHPLVQ--LDNCEEFFEELFDKNFQSI 440
L A Q ++ E FF FD Q I
Sbjct: 312 YSGTTLDAQTRYAQGTVNILESFFTGKFDYRPQDI 346
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSD--TVAEYNIGLAIAVSRRFQEGR 676
K LK++ VG DH++L I G ++ + S+ +VAE+ + + + R F
Sbjct: 83 KKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAH 142
Query: 677 KCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILY 730
+ I + +W + I + ++G T+ +G G IG + L F ++LY
Sbjct: 143 EQIINHDW---EVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLY 193
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
Length = 365
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 120/250 (48%), Gaps = 16/250 (6%)
Query: 861 YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSD--TVAEYNIG 918
Y ++ ++ K+ LK++ VG DH++L I G ++ + S+ +VAE+ +
Sbjct: 74 YITKERIDKAKK---LKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVM 130
Query: 919 LAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAF 978
+ + R F + I + +W + I + ++G T+ +G G IG + L F
Sbjct: 131 TMLVLVRNFVPAHEQIINHDW---EVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPF 187
Query: 979 KVSKILYTSRRV--KEEGTALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSL 1035
++LY + K+ +GA+ V ++ L A++D + V L T+ LI ++ S
Sbjct: 188 NPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSK 247
Query: 1036 MKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN-----C 1090
K A LVNT+RG + E + L+ ++ G G DV P+P P DHP + N
Sbjct: 248 FKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGN 307
Query: 1091 VLTPHTSSAT 1100
+TPH S T
Sbjct: 308 AMTPHYSGTT 317
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 293 YFGYNWFERSNGTALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAI 351
Y+ Y + +GA+ V ++ L A++D + V L T+ LI ++ S K A
Sbjct: 194 YYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAW 253
Query: 352 LINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPE 411
L+NT+RG + E + L+ ++ G G DV P+P P DHP + N GAG + M P
Sbjct: 254 LVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAG-NAMTPH 312
Query: 412 ----PLPADHPLVQ--LDNCEEFFEELFDKNFQSI 440
L A Q + E FF FD Q I
Sbjct: 313 YSGTTLDAQTRYAQGTKNILESFFTGKFDYRPQDI 347
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSD--TVAEYNIGLAIAVSRRFQEGR 676
K LK++ VG DH++L I G ++ + S+ +VAE+ + + + R F
Sbjct: 84 KKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAH 143
Query: 677 KCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILY 730
+ I + +W + I + ++G T+ +G G IG + L F ++LY
Sbjct: 144 EQIINHDW---EVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLY 194
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 121/250 (48%), Gaps = 15/250 (6%)
Query: 859 ILYTSRNKV--KTPKRTENLKVIT-TFSVGYD---HLELHEIKARGIRVGSVGHISSDTV 912
+L R +V + R LK+I+ T V D H++L +G+ V G S
Sbjct: 53 VLIRERTRVTRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLE-GKGSPVAP 111
Query: 913 AEYNIGLAIAVSRRFQEGRKCITSGEW---ALKQTHIIGPNI-MG--LKGATVGIVGLGN 966
AE L +A RR + + G W LK T + PN +G LKG T+GI G G
Sbjct: 112 AELTWALVMAAQRRIPQYVASLKHGAWQQSGLKST-TMPPNFGIGRVLKGQTLGIFGYGK 170
Query: 967 IGLETAKLLKAFKVSKILYTSRRVKEEGTALG-AQLVPLDTLCAESDFIFVTCALTKDTE 1025
IG A +AF ++ +++ KE A G A D L +SD + V L +T
Sbjct: 171 IGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETR 230
Query: 1026 QLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLV 1085
+I + MKPTA+ VNTSR L+++ +V L + G A +DV EP+ H L+
Sbjct: 231 SIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLL 290
Query: 1086 QLDNCVLTPH 1095
+++NC+ TPH
Sbjct: 291 RMENCICTPH 300
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%)
Query: 315 DTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKK 374
D L +SD + V L +T +I + MKPTA+ +NTSR L+++ +V L +
Sbjct: 210 DALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGR 269
Query: 375 IGGAGLDVMIPEPLPADHPLVQLDNC 400
G A +DV EP+ H L++++NC
Sbjct: 270 PGMAAIDVFETEPILQGHTLLRMENC 295
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 618 IKNLKVIT-TFSVGYD---HLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQ 673
+ LK+I+ T V D H++L +G+ V G S AE L +A RR
Sbjct: 69 LPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLE-GKGSPVAPAELTWALVMAAQRRIP 127
Query: 674 EGRKCITSGEW---ALKQTHIIGPNI-MG--LKGATVGIVGLGNIGLETAKLLKAFKVSK 727
+ + G W LK T + PN +G LKG T+GI G G IG A +AF ++
Sbjct: 128 QYVASLKHGAWQQSGLKST-TMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNV 186
Query: 728 ILYTSRRVKEEGQ 740
+++ KE +
Sbjct: 187 LVWGRENSKERAR 199
>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H)
Binding And Dimerization
Length = 358
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 116/250 (46%), Gaps = 4/250 (1%)
Query: 876 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 935
L++I G+D++++ GI V +V S + A+ + + + RR + +
Sbjct: 89 LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALR 148
Query: 936 SGE--WALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 993
G +++Q + ++G T+GI+GL +G A KAF + + Y
Sbjct: 149 EGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVALRAKAFGFNVLFYDPYLSDGI 208
Query: 994 GTALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052
ALG Q V L L SD + + C L + LI M+ A LVNT+RGGL+D
Sbjct: 209 ERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVD 268
Query: 1053 QEALVEFLKDKKIGGAGLDVMIPEPLP-ADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111
++AL + LK+ +I GA LDV EP + PL N + TPH + ++ E +
Sbjct: 269 EKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEA 328
Query: 1112 AENIIRGYKG 1121
A I R G
Sbjct: 329 AREIRRAITG 338
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 294 FGYN------WFERSNGTALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLM 346
FG+N + ALG Q V L L SD + + C L + LI M
Sbjct: 193 FGFNVLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQM 252
Query: 347 KPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL 388
+ A L+NT+RGGL+D++AL + LK+ +I GA LDV EP
Sbjct: 253 RQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPF 294
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678
K L++I G+D++++ GI V +V S + A+ + + + RR +
Sbjct: 87 KALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQA 146
Query: 679 ITSGE--WALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILY 730
+ G +++Q + ++G T+GI+GL +G A KAF + + Y
Sbjct: 147 LREGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVALRAKAFGFNVLFY 200
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 114/249 (45%), Gaps = 11/249 (4%)
Query: 873 TENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRK 932
E L I F +G + ++L RGI V + ++ +VAE IG + + R E
Sbjct: 72 AEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANA 131
Query: 933 CITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 992
G W + + +G +GI+G G+IG + L ++ + Y
Sbjct: 132 KAHRGVW-----NKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP 186
Query: 993 EGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052
G A Q+ L L SD + + T+ ++G K+ SLMKP ++L+N SRG ++D
Sbjct: 187 LGNA--TQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVD 244
Query: 1053 QEALVEFLKDKKIGGAGLDVMIPEPL----PADHPLVQLDNCVLTPHTSSATKAVRDEKS 1108
AL + L K + GA +DV EP P PL + DN +LTPH +T+ ++
Sbjct: 245 IPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIG 304
Query: 1109 STSAENIIR 1117
A +I+
Sbjct: 305 LEVAGKLIK 313
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 298 WFERSNGTALG--AQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT 355
+++ N LG Q+ L L SD + + T+ ++G K+ SLMKP ++LIN
Sbjct: 178 FYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINA 237
Query: 356 SRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL----PADHPLVQLDNC 400
SRG ++D AL + L K + GA +DV EP P PL + DN
Sbjct: 238 SRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNV 286
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678
+ L I F +G + ++L RGI V + ++ +VAE IG + + R E
Sbjct: 73 EKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAK 132
Query: 679 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILY 730
G W + + +G +GI+G G+IG + L ++ + Y
Sbjct: 133 AHRGVW-----NKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFY 179
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
Length = 334
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 136/298 (45%), Gaps = 30/298 (10%)
Query: 828 MGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKTPKRTENLKVITTFSVGYD 887
+ LK T + + L+ A+L+ F K+ T K P+ LK+I T SVG+D
Sbjct: 23 LSLKIYTTDVSKVPENELKKAELISVFVYDKL--TEELLSKXPR----LKLIHTRSVGFD 76
Query: 888 HLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHII 947
H++L K +GI V + S ++VAE+ + + +R + + ++ + + I+
Sbjct: 77 HIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLKRIEDRVKKLNFS-QDSEIL 135
Query: 948 GPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTL 1007
+ L T+G++G G IG A AF + Y + +E+ G LD L
Sbjct: 136 ARELNRL---TLGVIGTGRIGSRVAXYGLAFGXKVLCYDVVK-REDLKEKGCVYTSLDEL 191
Query: 1008 CAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067
ESD I + TK+T I ++ SL K L+NT+RG ++D +AL + K G
Sbjct: 192 LKESDVISLHVPYTKETHHXINEERISLXKDGVYLINTARGKVVDTDALYRAYQRGKFSG 251
Query: 1068 AGLDVMIPEPL----------PADHPLVQL-----DNCVLTPH----TSSATKAVRDE 1106
GLDV E + D L L DN ++TPH T + + +R+E
Sbjct: 252 LGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITPHIAYYTDKSLERIREE 309
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%)
Query: 296 YNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT 355
Y+ +R + G LD L ESD I + TK+T I ++ SL K LINT
Sbjct: 170 YDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHXINEERISLXKDGVYLINT 229
Query: 356 SRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL 388
+RG ++D +AL + K G GLDV E +
Sbjct: 230 ARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEI 262
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 621 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 680
LK+I T SVG+DH++L K +GI V + S ++VAE+ + + +R + +
Sbjct: 65 LKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLKRIEDRVK 124
Query: 681 SGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR---VKE 737
++ + + I+ + L T+G++G G IG A AF + Y + +KE
Sbjct: 125 KLNFS-QDSEILARELNRL---TLGVIGTGRIGSRVAXYGLAFGXKVLCYDVVKREDLKE 180
Query: 738 EGQLFS 743
+G +++
Sbjct: 181 KGCVYT 186
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 7/118 (5%)
Query: 62 YPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDE 121
Y ++P + +LK + + K+ +E+L + LK+I T SVG DH+ LD
Sbjct: 28 YTTDVSKVPEN----ELKKAELISVFVYDKLTEELLSKXP-RLKLIHTRSVGFDHIDLDY 82
Query: 122 IKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARL--SSFAEIQTRALD 177
K +GI V + S ++VAE+ + + +R ++ + + +L S +EI R L+
Sbjct: 83 CKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLKRIEDRVKKLNFSQDSEILARELN 140
>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|B Chain B, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|C Chain C, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|D Chain D, The Active Form Of Phosphoglycerate Dehydrogenase
Length = 410
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 106/237 (44%), Gaps = 11/237 (4%)
Query: 873 TENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRK 932
E L I F +G + ++L RGI V + ++ +VAE IG + + R E
Sbjct: 73 AEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANA 132
Query: 933 CITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 992
G W + + +G +GI+G G+IG + L ++ Y
Sbjct: 133 KAHRGVW-----NKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYDIENKLP 187
Query: 993 EGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052
G A Q+ L L SD + + T+ G K+ SL KP ++L+N SRG ++D
Sbjct: 188 LGNA--TQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVD 245
Query: 1053 QEALVEFLKDKKIGGAGLDVMIPEPL----PADHPLVQLDNCVLTPHTSSATKAVRD 1105
AL + L K + GA +DV EP P PL + DN +LTPH +T+ ++
Sbjct: 246 IPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQE 302
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 298 WFERSNGTALG--AQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT 355
+++ N LG Q+ L L SD + + T+ G K+ SL KP ++LIN
Sbjct: 179 FYDIENKLPLGNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINA 238
Query: 356 SRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL----PADHPLVQLDNC 400
SRG ++D AL + L K + GA +DV EP P PL + DN
Sbjct: 239 SRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNV 287
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678
+ L I F +G + ++L RGI V + ++ +VAE IG + + R E
Sbjct: 74 EKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAK 133
Query: 679 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAF 723
G W + + +G +GI+G G+IG + L ++
Sbjct: 134 AHRGVW-----NKLAAGSFEARGKKLGIIGYGHIGTQLGILAESL 173
>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Lactobacillus Plantarum
Length = 324
Score = 92.0 bits (227), Expect = 1e-18, Method: Composition-based stats.
Identities = 72/255 (28%), Positives = 109/255 (42%), Gaps = 19/255 (7%)
Query: 858 KILYTSRNKVKT--PKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEY 915
+++Y + +KT + T LK + S G D+L L ++A G+ V + I +D ++E
Sbjct: 42 EVMYGNHPLLKTILARPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISES 101
Query: 916 NIGLAIAVSRRF------QEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGL 969
+ ++V R + Q G + +WAL T L G + I G G IG
Sbjct: 102 VLAAMLSVVRGYHAAWLNQRGAR-----QWALPMT------TSTLTGQQLLIYGTGQIGQ 150
Query: 970 ETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIG 1029
A A + I + + A ++FI LT T L
Sbjct: 151 SLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFS 210
Query: 1030 RKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 1089
+ F K +L+N RG +D AL+ L ++ A LDV PEPLP DHPL Q D+
Sbjct: 211 TELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDD 270
Query: 1090 CVLTPHTSSATKAVR 1104
++TPH S R
Sbjct: 271 VLITPHISGQIAHFR 285
Score = 59.7 bits (143), Expect = 9e-09, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 40/78 (51%)
Query: 322 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLD 381
+FI LT T L + F K +LIN RG +D AL+ L ++ A LD
Sbjct: 193 NFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALD 252
Query: 382 VMIPEPLPADHPLVQLDN 399
V PEPLP DHPL Q D+
Sbjct: 253 VTEPEPLPTDHPLWQRDD 270
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 114/239 (47%), Gaps = 19/239 (7%)
Query: 876 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 935
+K +T +VG D++++ +K GIR+ +V S +AE+ + + + R + + +
Sbjct: 69 IKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQ 128
Query: 936 SGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGT 995
+G++ K IG L TVG++G G+IG KL K F I Y +K G
Sbjct: 129 AGDYE-KAGTFIGKE---LGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMK--GD 182
Query: 996 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEA 1055
V L+ L +SD I + + +I F+LMKP AI++NT+R L+D +A
Sbjct: 183 HPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQA 242
Query: 1056 LVEFLKDKKIGGAGLDVMIPEPL-------------PADHPLVQLDNCVLTPHTSSATK 1101
++ LK K+ G G+D E P L+ + N VL+PH + T+
Sbjct: 243 MLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTE 301
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 312 VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLK 371
V L+ L +SD I + + +I F+LMKP AI+INT+R L+D +A++ LK
Sbjct: 189 VSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLK 248
Query: 372 DKKIGGAGLD 381
K+ G G+D
Sbjct: 249 SGKLAGVGID 258
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Query: 621 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 680
+K +T +VG D++++ +K GIR+ +V S +AE+ + + + R + + +
Sbjct: 69 IKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQ 128
Query: 681 SGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGQ 740
+G++ K IG L TVG++G G+IG KL K F I Y +K +
Sbjct: 129 AGDYE-KAGTFIGKE---LGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHP 184
Query: 741 LFSLV 745
F V
Sbjct: 185 DFDYV 189
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
Length = 343
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 110/231 (47%), Gaps = 18/231 (7%)
Query: 884 VGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQ 943
VG++ + K + V +V S +AE + A+ + R+ E R +
Sbjct: 79 VGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWP 138
Query: 944 THIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVP 1003
+++I I L TVG++G+G+IG A++ A I Y E L
Sbjct: 139 SNLISNEIYNL---TVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFL--TYTD 193
Query: 1004 LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK 1063
DT+ E+D + + L TE +IG KQ MK +A L+N +RG L+D AL++ L+D
Sbjct: 194 FDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDG 253
Query: 1064 KIGGAGLDVMIPEP------------LPADH-PLVQLDNCVLTPHTSSATK 1101
+I GAGLD + E +P D+ L ++ N V+TPH++ T+
Sbjct: 254 EIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTE 304
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 45/73 (61%)
Query: 314 LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDK 373
DT+ E+D + + L TE +IG KQ MK +A LIN +RG L+D AL++ L+D
Sbjct: 194 FDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDG 253
Query: 374 KIGGAGLDVMIPE 386
+I GAGLD + E
Sbjct: 254 EIAGAGLDTLAGE 266
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 629 VGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQ 688
VG++ + K + V +V S +AE + A+ + R+ E R +
Sbjct: 79 VGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWP 138
Query: 689 THIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILY 730
+++I I L TVG++G+G+IG A++ A I Y
Sbjct: 139 SNLISNEIYNL---TVGLIGVGHIGSAVAEIFSAMGAKVIAY 177
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 11/104 (10%)
Query: 75 IEKLKGCSALLCNPHQKVDKEVLDR--SGENLKVIATFSVGHDHLHLDEIKSRGIRVGTV 132
++ +GCS++ P VD+EV+ + S +K I VG + ++ D K + V V
Sbjct: 40 VDLAEGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIGLRIVGFNTINFDWTKKYNLLVTNV 99
Query: 133 GPVSSDTVAEYNIGLAIAVSR-----RFQQRHN----WIARLSS 167
S +AE + A+ + R R++ H+ W + L S
Sbjct: 100 PVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSNLIS 143
>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|B Chain B, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|C Chain C, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|D Chain D, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
Length = 404
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 106/237 (44%), Gaps = 11/237 (4%)
Query: 873 TENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRK 932
E L I F++G + ++L RGI V + ++ +VAE IG + + R E
Sbjct: 67 AEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANA 126
Query: 933 CITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 992
G + + +G +GI+G G+IG + L ++ Y
Sbjct: 127 KAHRGVG-----NKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYDIENKLP 181
Query: 993 EGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052
G A Q+ L L SD + + T+ G K+ SL KP ++L+N SRG ++D
Sbjct: 182 LGNA--TQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVD 239
Query: 1053 QEALVEFLKDKKIGGAGLDVMIPEPL----PADHPLVQLDNCVLTPHTSSATKAVRD 1105
AL + L K + GA +DV EP P PL + DN +LTPH +T+ ++
Sbjct: 240 IPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQE 296
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 298 WFERSNGTALG--AQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT 355
+++ N LG Q+ L L SD + + T+ G K+ SL KP ++LIN
Sbjct: 173 FYDIENKLPLGNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINA 232
Query: 356 SRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL----PADHPLVQLDNC 400
SRG ++D AL + L K + GA +DV EP P PL + DN
Sbjct: 233 SRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNV 281
>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase From
Rhizobium Etli
pdb|4HY3|B Chain B, Crystal Structure Of A Phosphoglycerate Oxidoreductase From
Rhizobium Etli
pdb|4HY3|C Chain C, Crystal Structure Of A Phosphoglycerate Oxidoreductase From
Rhizobium Etli
pdb|4HY3|D Chain D, Crystal Structure Of A Phosphoglycerate Oxidoreductase From
Rhizobium Etli
Length = 365
Score = 85.9 bits (211), Expect = 1e-16, Method: Composition-based stats.
Identities = 61/210 (29%), Positives = 101/210 (48%), Gaps = 17/210 (8%)
Query: 897 RGIRVGSVGHISSDTVAEYNIGLAIAVSR-------RFQEGRKCITSGEWALKQTHIIGP 949
RGI V + G + ++ VAE +G A+A++R FQEG + + GE I
Sbjct: 119 RGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTE-LWGGEGNASARLI--- 174
Query: 950 NIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCA 1009
G+ +GIVG G++G ++L F+ ++ + G + L+ +
Sbjct: 175 -----AGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRSXLEENGVEPASLEDVLT 229
Query: 1010 ESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAG 1069
+SDFIFV A+T + ++ +G + FS + A + SR ++D +AL + I A
Sbjct: 230 KSDFIFVVAAVTSENKRFLGAEAFSSXRRGAAFILLSRADVVDFDALXAAVSSGHIVAAS 289
Query: 1070 LDVMIPEPLPADHPLVQLDNCVLTPHTSSA 1099
DV EPLP DHP+ L + + H + A
Sbjct: 290 -DVYPEEPLPLDHPVRSLKGFIRSAHRAGA 318
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 298 WFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSR 357
W RS G + L+ + +SDFIFV A+T + ++ +G + FS + A I SR
Sbjct: 208 WLPRSXLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSXRRGAAFILLSR 267
Query: 358 GGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQL 397
++D +AL + I A DV EPLP DHP+ L
Sbjct: 268 ADVVDFDALXAAVSSGHIVAAS-DVYPEEPLPLDHPVRSL 306
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 16/90 (17%)
Query: 642 RGIRVGSVGHISSDTVAEYNIGLAIAVSR-------RFQEGRKCITSGEWALKQTHIIGP 694
RGI V + G + ++ VAE +G A+A++R FQEG + + GE I
Sbjct: 119 RGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTE-LWGGEGNASARLI--- 174
Query: 695 NIMGLKGATVGIVGLGNIGLETAKLLKAFK 724
G+ +GIVG G++G ++L F+
Sbjct: 175 -----AGSEIGIVGFGDLGKALRRVLSGFR 199
Score = 30.4 bits (67), Expect = 5.7, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 125 RGIRVGTVGPVSSDTVAEYNIGLAIAVSR 153
RGI V T G V ++ VAE +G A+A++R
Sbjct: 119 RGIHVVTTGQVFAEPVAEIGLGFALALAR 147
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 119/257 (46%), Gaps = 7/257 (2%)
Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934
+LKV G+D L+L + RG+ + ++ + L ++V R +
Sbjct: 80 SLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAA 139
Query: 935 TSGE-WALKQTHI-IGPNIMGLKGATVGIVGLGNIGLETA-KLLKAFKVSKILY-TSRRV 990
+G+ + H+ IG + +G +G VGLG I E A K + + + Y +
Sbjct: 140 RTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPAD 199
Query: 991 KEEGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGG 1049
E ALGA+ V L+ L SD + V+ K T LI F+ MKP + +VNT+RG
Sbjct: 200 AETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGP 259
Query: 1050 LLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSS 1109
++ Q+AL+ LK K+ AGLDV EP L+++ + LT H E
Sbjct: 260 VISQDALIAALKSGKLLSAGLDVHEFEP-QVSKELIEMKHVTLTTHIGGVAIETFHEFER 318
Query: 1110 TSAENIIRG-YKGEPMI 1125
+ NI R +G+P++
Sbjct: 319 LTMTNIDRFLLQGKPLL 335
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 306 ALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQE 364
ALGA+ V L+ L SD + V+ K T LI F+ MKP + ++NT+RG ++ Q+
Sbjct: 205 ALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQD 264
Query: 365 ALVEFLKDKKIGGAGLDVMIPEP 387
AL+ LK K+ AGLDV EP
Sbjct: 265 ALIAALKSGKLLSAGLDVHEFEP 287
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Query: 614 VSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQ 673
+S L +LKV G+D L+L + RG+ + ++ + L ++V R
Sbjct: 74 ISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLAS 133
Query: 674 EGRKCITSGE-WALKQTHI-IGPNIMGLKGATVGIVGLGNIGLETAK 718
+ +G+ + H+ IG + +G +G VGLG I E A+
Sbjct: 134 YSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIAR 180
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 119/257 (46%), Gaps = 7/257 (2%)
Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934
+LKV G+D L+L + RG+ + ++ + L ++V R +
Sbjct: 80 SLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAA 139
Query: 935 TSGE-WALKQTHI-IGPNIMGLKGATVGIVGLGNIGLETA-KLLKAFKVSKILY-TSRRV 990
+G+ + H+ IG + +G +G VGLG I E A K + + + Y +
Sbjct: 140 RTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPAD 199
Query: 991 KEEGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGG 1049
E ALGA+ V L+ L SD + V+ K T LI F+ MKP + +VNT+RG
Sbjct: 200 AETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGP 259
Query: 1050 LLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSS 1109
++ Q+AL+ LK K+ AGLDV EP L+++ + LT H E
Sbjct: 260 VISQDALIAALKSGKLLSAGLDVHEFEP-QVSKELIEMKHVTLTTHIGGVAIETFHEFER 318
Query: 1110 TSAENIIRG-YKGEPMI 1125
+ NI R +G+P++
Sbjct: 319 LTMTNIDRFLLQGKPLL 335
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 306 ALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQE 364
ALGA+ V L+ L SD + V+ K T LI F+ MKP + ++NT+RG ++ Q+
Sbjct: 205 ALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQD 264
Query: 365 ALVEFLKDKKIGGAGLDVMIPEP 387
AL+ LK K+ AGLDV EP
Sbjct: 265 ALIAALKSGKLLSAGLDVHEFEP 287
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Query: 614 VSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQ 673
+S L +LKV G+D L+L + RG+ + ++ + L ++V R
Sbjct: 74 ISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLAS 133
Query: 674 EGRKCITSGE-WALKQTHI-IGPNIMGLKGATVGIVGLGNIGLETAK 718
+ +G+ + H+ IG + +G +G VGLG I E A+
Sbjct: 134 YSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIAR 180
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 119/257 (46%), Gaps = 7/257 (2%)
Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934
+LKV G+D L+L + RG+ + ++ + L ++V R +
Sbjct: 80 SLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAA 139
Query: 935 TSGE-WALKQTHI-IGPNIMGLKGATVGIVGLGNIGLETA-KLLKAFKVSKILY-TSRRV 990
+G+ + H+ IG + +G +G VGLG I E A K + + + Y +
Sbjct: 140 RTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPAD 199
Query: 991 KEEGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGG 1049
E ALGA+ V L+ L SD + V+ K T LI F+ MKP + +VNT+RG
Sbjct: 200 AETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGP 259
Query: 1050 LLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSS 1109
++ Q+AL+ LK K+ AGLDV EP L+++ + LT H E
Sbjct: 260 VISQDALIAALKSGKLLSAGLDVHEFEP-NVSKELIEMKHVTLTTHIGGVAIETFHEFER 318
Query: 1110 TSAENIIRG-YKGEPMI 1125
+ NI R +G+P++
Sbjct: 319 LTMTNIDRFLLQGKPLL 335
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 306 ALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQE 364
ALGA+ V L+ L SD + V+ K T LI F+ MKP + ++NT+RG ++ Q+
Sbjct: 205 ALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQD 264
Query: 365 ALVEFLKDKKIGGAGLDVMIPEP 387
AL+ LK K+ AGLDV EP
Sbjct: 265 ALIAALKSGKLLSAGLDVHEFEP 287
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Query: 614 VSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQ 673
+S L +LKV G+D L+L + RG+ + ++ + L ++V R
Sbjct: 74 ISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLAS 133
Query: 674 EGRKCITSGE-WALKQTHI-IGPNIMGLKGATVGIVGLGNIGLETAK 718
+ +G+ + H+ IG + +G +G VGLG I E A+
Sbjct: 134 YSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIAR 180
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 108/256 (42%), Gaps = 24/256 (9%)
Query: 876 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 935
+K I T + G DH++ K G + V S + +AE +AV++ R
Sbjct: 70 VKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAE------LAVTQAMMLLRHTAY 123
Query: 936 SGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 993
+ K+ + + ++ TVG+VGLG IG A++ + I +K
Sbjct: 124 TTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIK-- 181
Query: 994 GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQ 1053
G V LD + +SD I + K+ ++ R MK AILVN +RG L+D
Sbjct: 182 GIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDT 241
Query: 1054 EALVEFLKDKKIGGAGLDVMIPEPL-------------PADHPLVQL-DNCVLTPHTSSA 1099
EA++E ++ K+GG G DV+ E P LV L ++TPH S
Sbjct: 242 EAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSY 301
Query: 1100 TKAVRDEKSSTSAENI 1115
T S +N+
Sbjct: 302 TDEAVKNMVEVSYQNL 317
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 312 VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLK 371
V LD + +SD I + K+ ++ R MK AIL+N +RG L+D EA++E ++
Sbjct: 190 VSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVE 249
Query: 372 DKKIGGAGLDVM 383
K+GG G DV+
Sbjct: 250 SGKLGGYGCDVL 261
Score = 33.1 bits (74), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 15/129 (11%)
Query: 602 SKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYN 661
+K++++I LGV +++ T + G DH++ K G + V S + +AE
Sbjct: 58 NKQNLDIYKKLGVKYIL-------TRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAE-- 108
Query: 662 IGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKL 719
+AV++ R + K+ + + ++ TVG+VGLG IG A++
Sbjct: 109 ----LAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQI 164
Query: 720 LKAFKVSKI 728
+ I
Sbjct: 165 FHGMGATVI 173
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 63/240 (26%), Positives = 108/240 (45%), Gaps = 26/240 (10%)
Query: 883 SVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITS-GEWAL 941
+VG D++++ + K G ++ +V S + +AE+ AI +R ++ + L
Sbjct: 78 NVGVDNIDMAKAKELGFQITNVPVYSPNAIAEH---AAIQAARILRQDKAMDEKVARHDL 134
Query: 942 KQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQL 1001
+ IG + + VG+VG G+IG ++++ F I Y R E G +
Sbjct: 135 RWAPTIGREV---RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR-NPELEKKGYYV 190
Query: 1002 VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLK 1061
LD L ++D I + +I + + MK ++VN SRG L+D +A++ L
Sbjct: 191 DSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLD 250
Query: 1062 DKKIGGAGLDVM---------------IPEPLPADHPLVQLDNCVLTPHTS-SATKAVRD 1105
KI G +DV P+ AD L+ N ++TPHT+ T AVR+
Sbjct: 251 SGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLAD--LIARPNVLVTPHTAFYTTHAVRN 308
Score = 39.3 bits (90), Expect = 0.014, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 296 YNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT 355
Y+ F G + LD L ++D I + +I + + MK +++N
Sbjct: 175 YDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNV 234
Query: 356 SRGGLLDQEALVEFLKDKKIGGAGLDV 382
SRG L+D +A++ L KI G +DV
Sbjct: 235 SRGPLVDTDAVIRGLDSGKIFGYAMDV 261
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 628 SVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITS-GEWAL 686
+VG D++++ + K G ++ +V S + +AE+ AI +R ++ + L
Sbjct: 78 NVGVDNIDMAKAKELGFQITNVPVYSPNAIAEH---AAIQAARILRQDKAMDEKVARHDL 134
Query: 687 KQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 737
+ IG + + VG+VG G+IG ++++ F I Y R E
Sbjct: 135 RWAPTIGREV---RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE 182
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 63.9 bits (154), Expect = 4e-10, Method: Composition-based stats.
Identities = 64/239 (26%), Positives = 107/239 (44%), Gaps = 24/239 (10%)
Query: 883 SVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALK 942
+VG D++++ + K G ++ +V S + +AE+ A V R Q+ R + L+
Sbjct: 78 NVGVDNIDMDKAKELGFQITNVPVYSPNAIAEHAAIQAARVLR--QDKRMDEKMAKRDLR 135
Query: 943 QTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLV 1002
IG + + VG+VG G+IG ++++ F I Y + E G +
Sbjct: 136 WAPTIGREV---RDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDIFK-NPELEKKGYYVD 191
Query: 1003 PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062
LD L ++D I + +I K + MK ++VN SRG L+D +A++ L
Sbjct: 192 SLDDLYKQADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDS 251
Query: 1063 KKIGGAGLDVM---------------IPEPLPADHPLVQLDNCVLTPHTS-SATKAVRD 1105
KI G +D P+ AD L+ N ++TPHT+ T AVR+
Sbjct: 252 GKIFGFVMDTYEDEVGVFNKDWEGKEFPDKRLAD--LIDRPNVLVTPHTAFYTTHAVRN 308
Score = 37.0 bits (84), Expect = 0.060, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 295 GYNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILIN 354
Y+ F+ G + LD L ++D I + +I K + MK +++N
Sbjct: 174 AYDIFKNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDKSIAEMKDGVVIVN 233
Query: 355 TSRGGLLDQEALVEFLKDKKIGGAGLD 381
SRG L+D +A++ L KI G +D
Sbjct: 234 CSRGRLVDTDAVIRGLDSGKIFGFVMD 260
Score = 34.3 bits (77), Expect = 0.43, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 628 SVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALK 687
+VG D++++ + K G ++ +V S + +AE+ A V R Q+ R + L+
Sbjct: 78 NVGVDNIDMDKAKELGFQITNVPVYSPNAIAEHAAIQAARVLR--QDKRMDEKMAKRDLR 135
Query: 688 QTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILY 730
IG + + VG+VG G+IG ++++ F I Y
Sbjct: 136 WAPTIGREV---RDQVVGVVGTGHIGQVFMRIMEGFGAKVIAY 175
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 62/240 (25%), Positives = 107/240 (44%), Gaps = 26/240 (10%)
Query: 883 SVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITS-GEWAL 941
+VG D++++ + K G ++ +V S + +AE+ AI +R ++ + L
Sbjct: 78 NVGVDNIDMAKAKELGFQITNVPVYSPNAIAEH---AAIQAARILRQDKAMDEKVARHDL 134
Query: 942 KQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQL 1001
+ IG + + VG+VG G+IG ++++ F I Y R E G +
Sbjct: 135 RWAPTIGREV---RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR-NPELEKKGYYV 190
Query: 1002 VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLK 1061
LD L ++D I + +I + + MK ++VN SRG L+D +A++ L
Sbjct: 191 DSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLD 250
Query: 1062 DKKIGGAGLDVM---------------IPEPLPADHPLVQLDNCVLTPHTS-SATKAVRD 1105
KI G +DV P+ AD L+ N ++TP T+ T AVR+
Sbjct: 251 SGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLAD--LIARPNVLVTPKTAFYTTHAVRN 308
Score = 39.3 bits (90), Expect = 0.014, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 296 YNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT 355
Y+ F G + LD L ++D I + +I + + MK +++N
Sbjct: 175 YDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNV 234
Query: 356 SRGGLLDQEALVEFLKDKKIGGAGLDV 382
SRG L+D +A++ L KI G +DV
Sbjct: 235 SRGPLVDTDAVIRGLDSGKIFGYAMDV 261
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 628 SVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITS-GEWAL 686
+VG D++++ + K G ++ +V S + +AE+ AI +R ++ + L
Sbjct: 78 NVGVDNIDMAKAKELGFQITNVPVYSPNAIAEH---AAIQAARILRQDKAMDEKVARHDL 134
Query: 687 KQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 737
+ IG + + VG+VG G+IG ++++ F I Y R E
Sbjct: 135 RWAPTIGREV---RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE 182
>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related Protein
From Thermoplasma Acidophilum
pdb|3GVX|B Chain B, Crystal Structure Of Glycerate Dehydrogenase Related Protein
From Thermoplasma Acidophilum
Length = 290
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 113/253 (44%), Gaps = 18/253 (7%)
Query: 871 KRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEG 930
KRT+ ++ I S G DH++++ I + + G S +VAE+ L +A ++ E
Sbjct: 48 KRTKXIQAI---SAGVDHIDVNGIPENVVLCSNAGAYSI-SVAEHAFALLLAHAKNILEN 103
Query: 931 RKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV 990
+ +G +Q+ P + L G +GI+G G IG A L KAF I YT V
Sbjct: 104 NELXKAG--IFRQS----PTTL-LYGKALGILGYGGIGRRVAHLAKAFGXRVIAYTRSSV 156
Query: 991 KEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGL 1050
+ + P D L +SDF+ + LT T + + + + +VN +R +
Sbjct: 157 DQNVDVISES--PAD-LFRQSDFVLIAIPLTDKTRGXVNSRLLANARKNLTIVNVARADV 213
Query: 1051 LDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKA-VRDEKSS 1109
+ + + FLK++ DV EP + L N +L+PH + + D
Sbjct: 214 VSKPDXIGFLKERSDVWYLSDVWWNEPEITE---TNLRNAILSPHVAGGXSGEIXDIAIQ 270
Query: 1110 TSAENIIRGYKGE 1122
+ EN+ ++GE
Sbjct: 271 LAFENVRNFFEGE 283
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 313 PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKD 372
P D L +SDF+ + LT T + + + + ++N +R ++ + + FLK+
Sbjct: 167 PAD-LFRQSDFVLIAIPLTDKTRGXVNSRLLANARKNLTIVNVARADVVSKPDXIGFLKE 225
Query: 373 KKIGGAGLDVMIPEP 387
+ DV EP
Sbjct: 226 RSDVWYLSDVWWNEP 240
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 2/167 (1%)
Query: 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVT 1017
+VGI G G +G + A+ L+A+ ++ R G L ++ +
Sbjct: 141 SVGIXGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINL 200
Query: 1018 CALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEP 1077
T T +I + + A ++N +RG + + L+ L K+ GA LDV EP
Sbjct: 201 LPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQEP 260
Query: 1078 LPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPM 1124
LP + PL + TPH ++ T+ E + I + KGEP+
Sbjct: 261 LPQESPLWRHPRVAXTPHIAAVTRPA--EAIDYISRTITQLEKGEPV 305
Score = 37.4 bits (85), Expect = 0.050, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 32/64 (50%)
Query: 331 TKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPA 390
T T +I + + A ++N +RG + + L+ L K+ GA LDV EPLP
Sbjct: 204 TAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQEPLPQ 263
Query: 391 DHPL 394
+ PL
Sbjct: 264 ESPL 267
>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|B Chain B, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|C Chain C, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|D Chain D, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|E Chain E, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|F Chain F, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|G Chain G, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|H Chain H, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
Length = 381
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 82/208 (39%), Gaps = 34/208 (16%)
Query: 876 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 935
+ + T + G DH++ +K GI + ++ V EY + ++ R
Sbjct: 62 INFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLXLAER--------- 112
Query: 936 SGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK--EE 993
+ L+ T+GIVG+GN+G L+A + +L R +E
Sbjct: 113 --------------DGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDE 158
Query: 994 GTALGAQLVPLDTLCAESDFIFVTCALTKD----TEQLIGRKQFSLMKPTAILVNTSRGG 1049
G LD L E+D + L KD T L +KP AIL+N RG
Sbjct: 159 G-----DFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGP 213
Query: 1050 LLDQEALVEFLKDKKIGGAGLDVMIPEP 1077
++D AL+ L + LDV EP
Sbjct: 214 VVDNAALLARLNAGQPLSVVLDVWEGEP 241
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 314 LDTLCAESDFIFVTCALTKD----TEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEF 369
LD L E+D + L KD T L +KP AILIN RG ++D AL+
Sbjct: 164 LDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLAR 223
Query: 370 LKDKKIGGAGLDVMIPEP 387
L + LDV EP
Sbjct: 224 LNAGQPLSVVLDVWEGEP 241
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 25/126 (19%)
Query: 621 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 680
+ + T + G DH++ +K GI + ++ V EY + ++ R
Sbjct: 62 INFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLXLAER--------- 112
Query: 681 SGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK--EE 738
+ L+ T+GIVG+GN+G L+A + +L R +E
Sbjct: 113 --------------DGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDE 158
Query: 739 GQLFSL 744
G +L
Sbjct: 159 GDFRTL 164
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 71 RDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVG 130
R I +E+L AL KV++ +L SG + + T + G DH+ +K GI
Sbjct: 31 RPIPVEELNHADALXVRSVTKVNESLL--SGTPINFVGTATAGTDHVDEAWLKQAGIGFS 88
Query: 131 TVGPVSSDTVAEYNIGLAIAVSRR 154
++ V EY + ++ R
Sbjct: 89 AAPGCNAIAVVEYVFSALLXLAER 112
>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
pdb|1QP8|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
Length = 303
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 62/227 (27%), Positives = 98/227 (43%), Gaps = 22/227 (9%)
Query: 837 IVGLGNIGLETAKLLKAFKVSKILYTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKA 896
IV G++G A L VS+I T+ K P+ LK I + G DHL I
Sbjct: 23 IVRGGDLGNVEAAL-----VSRI--TAEELAKXPR----LKFIQVVTAGLDHLPWESIPP 71
Query: 897 RGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKG 956
G+ G ++D VAE+ + L +A +R I GE + + I ++G
Sbjct: 72 HVTVAGNAGS-NADAVAEFALALLLAPYKRI------IQYGEKXKRGDYGRDVEIPLIQG 124
Query: 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFV 1016
V ++GLG IG K+L A +++ SR KE L + E+
Sbjct: 125 EKVAVLGLGEIGTRVGKILAALG-AQVRGFSRTPKEGPWRFTNSL---EEALREARAAVC 180
Query: 1017 TCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK 1063
L K T L+ + +L A+ VN R +LD++ ++ LK++
Sbjct: 181 ALPLNKHTRGLVKYQHLALXAEDAVFVNVGRAEVLDRDGVLRILKER 227
Score = 35.8 bits (81), Expect = 0.16, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 621 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 680
LK I + G DHL I G+ G ++D VAE+ + L +A +R I
Sbjct: 51 LKFIQVVTAGLDHLPWESIPPHVTVAGNAGS-NADAVAEFALALLLAPYKRI------IQ 103
Query: 681 SGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 737
GE + + I ++G V ++GLG IG K+L A +++ SR KE
Sbjct: 104 YGEKXKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKILAALG-AQVRGFSRTPKE 159
>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase
Complexed With Nad
pdb|2O4C|B Chain B, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase
Complexed With Nad
Length = 380
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 96/228 (42%), Gaps = 36/228 (15%)
Query: 876 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 935
++ + T ++G DHL+L GI S ++ V +Y +G +A++
Sbjct: 59 VRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAE---------V 109
Query: 936 SGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGT 995
G ++T+ + + GLG +KV + R+ +E
Sbjct: 110 RGADLAERTYGVVGAGQVGGRLVEVLRGLG------------WKV-LVCDPPRQAREPD- 155
Query: 996 ALGAQLVPLDTLCAESDFIFVTCALTKD----TEQLIGRKQFSLMKPTAILVNTSRGGLL 1051
+ V L+ L AE+D I + L +D T L+ + + ++P LVN SRG ++
Sbjct: 156 ---GEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVV 212
Query: 1052 DQEALVEFLKDKKIGGAGLDVMIP--EPLPADHPLVQLDNCVLTPHTS 1097
D +AL L+ GGA L+V + E P P + + TPH +
Sbjct: 213 DNQALRRLLE----GGADLEVALDVWEGEPQADPELAARCLIATPHIA 256
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 310 QLVPLDTLCAESDFIFVTCALTKD----TEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365
+ V L+ L AE+D I + L +D T L+ + + ++P L+N SRG ++D +A
Sbjct: 157 EFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQA 216
Query: 366 LVEFLKDKKIGGAGLDVMI 384
L L+ GGA L+V +
Sbjct: 217 LRRLLE----GGADLEVAL 231
>pdb|3E0J|A Chain A, X-Ray Structure Of The Complex Of Regulatory Subunits Of
Human Dna Polymerase Delta
pdb|3E0J|C Chain C, X-Ray Structure Of The Complex Of Regulatory Subunits Of
Human Dna Polymerase Delta
pdb|3E0J|E Chain E, X-Ray Structure Of The Complex Of Regulatory Subunits Of
Human Dna Polymerase Delta
pdb|3E0J|G Chain G, X-Ray Structure Of The Complex Of Regulatory Subunits Of
Human Dna Polymerase Delta
Length = 476
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 84 LLCNPHQKVDKEV--LDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVA 141
L+ NP+Q V L SG+N+ I +S DHL EI +RV + P + DT+
Sbjct: 334 LVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHL---EILEWTLRVRHISPTAPDTLG 390
Query: 142 EY 143
Y
Sbjct: 391 CY 392
>pdb|1V9L|A Chain A, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|B Chain B, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|C Chain C, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|D Chain D, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|E Chain E, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|F Chain F, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
Length = 421
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 829 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKTPKRTENLKVI 879
G++G TV I G+GN+G TA L+ I + N V K N+++I
Sbjct: 207 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELI 257
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 791 EDQVQTDGLKTLTELCYHGTIN-GEWALKQTH 821
+ QV+ DG + L E Y GT+N W +K+ H
Sbjct: 64 QSQVKADGFQKLLEFIYTGTLNLDSWNVKEIH 95
>pdb|4EJ6|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase
(Target Psi-012003) From Sinorhizobium Meliloti 1021
pdb|4EJM|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase
(Target Psi-012003) From Sinorhizobium Meliloti 1021
Bound To Nadp
Length = 370
Score = 29.6 bits (65), Expect = 8.9, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 824 GPNIMGLK-GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVK 868
G ++ G+K G+TV I+G G IGL T +L + + ++ ++R K
Sbjct: 174 GVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATK 219
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 1039 TAILVNTSRGGLLDQEALVEFLKD-KKIGGAG--LDVMIP 1075
T I+V ++G D EAL+EF+ D +K GG G LD +IP
Sbjct: 731 TLIVVPFNQGSKQDVEALIEFIYDTEKNGGLGWDLDAIIP 770
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 29.6 bits (65), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 1039 TAILVNTSRGGLLDQEALVEFLKD-KKIGGAG--LDVMIP 1075
T I+V ++G D EAL+EF+ D +K GG G LD +IP
Sbjct: 731 TLIVVPFNQGSKQDVEALIEFIYDTEKNGGLGWDLDAIIP 770
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 1039 TAILVNTSRGGLLDQEALVEFLKD-KKIGGAG--LDVMIP 1075
T I+V ++G D EAL+EF+ D +K GG G LD +IP
Sbjct: 532 TLIVVPFNQGSKQDVEALIEFIYDTEKNGGLGWDLDAIIP 571
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,314,899
Number of Sequences: 62578
Number of extensions: 1446844
Number of successful extensions: 3952
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3478
Number of HSP's gapped (non-prelim): 326
length of query: 1128
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1019
effective length of database: 8,152,335
effective search space: 8307229365
effective search space used: 8307229365
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)