Query psy13054
Match_columns 1128
No_of_seqs 760 out of 4392
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 18:17:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13054.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13054hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0111 SerA Phosphoglycerate 100.0 5.8E-63 1.3E-67 559.0 29.8 275 844-1124 36-311 (324)
2 PRK15409 bifunctional glyoxyla 100.0 2.1E-61 4.6E-66 548.4 30.9 281 845-1128 37-318 (323)
3 COG1052 LdhA Lactate dehydroge 100.0 8E-61 1.7E-65 541.1 29.6 280 846-1128 37-321 (324)
4 PRK08410 2-hydroxyacid dehydro 100.0 4.8E-60 1E-64 535.6 30.5 275 844-1123 33-311 (311)
5 PRK06487 glycerate dehydrogena 100.0 1.3E-59 2.9E-64 533.4 30.4 275 844-1124 36-313 (317)
6 COG1052 LdhA Lactate dehydroge 100.0 6.2E-60 1.3E-64 533.8 25.5 302 42-482 10-312 (324)
7 PRK06932 glycerate dehydrogena 100.0 6.1E-59 1.3E-63 527.0 30.1 275 844-1123 35-314 (314)
8 KOG0068|consensus 100.0 1.2E-59 2.5E-64 509.7 18.8 330 18-506 5-343 (406)
9 PRK13243 glyoxylate reductase; 100.0 5.9E-58 1.3E-62 523.2 30.8 282 844-1128 36-321 (333)
10 PLN03139 formate dehydrogenase 100.0 1.3E-57 2.9E-62 524.8 32.3 279 844-1126 88-371 (386)
11 PRK07574 formate dehydrogenase 100.0 1.1E-57 2.5E-62 525.8 31.4 280 844-1127 81-365 (385)
12 PLN02928 oxidoreductase family 100.0 3.7E-57 8E-62 518.7 31.0 275 844-1126 52-342 (347)
13 PRK11790 D-3-phosphoglycerate 100.0 4.7E-57 1E-61 527.9 31.3 276 844-1128 44-325 (409)
14 KOG0068|consensus 100.0 1.7E-57 3.6E-62 493.0 24.3 274 843-1121 37-313 (406)
15 PLN02306 hydroxypyruvate reduc 100.0 3.1E-56 6.7E-61 515.1 30.5 278 844-1128 52-353 (386)
16 COG0111 SerA Phosphoglycerate 100.0 1.8E-56 3.9E-61 506.1 25.7 292 42-433 11-310 (324)
17 PRK15409 bifunctional glyoxyla 100.0 5.3E-56 1.2E-60 504.2 28.8 294 43-432 11-312 (323)
18 TIGR01327 PGDH D-3-phosphoglyc 100.0 9.9E-56 2.1E-60 532.4 30.6 278 844-1128 31-310 (525)
19 PRK13581 D-3-phosphoglycerate 100.0 2.8E-55 6.1E-60 528.6 30.4 278 844-1128 33-311 (526)
20 PRK08410 2-hydroxyacid dehydro 100.0 6.1E-55 1.3E-59 494.0 29.7 287 46-431 14-309 (311)
21 PRK12480 D-lactate dehydrogena 100.0 2E-53 4.4E-58 484.8 29.2 280 841-1128 33-329 (330)
22 PRK06487 glycerate dehydrogena 100.0 2.7E-53 5.9E-58 481.8 27.5 268 70-431 35-310 (317)
23 PRK06932 glycerate dehydrogena 100.0 5.1E-53 1.1E-57 478.7 28.5 268 70-430 34-311 (314)
24 PRK11790 D-3-phosphoglycerate 100.0 8.7E-53 1.9E-57 492.0 29.9 288 44-432 20-319 (409)
25 PRK15469 ghrA bifunctional gly 100.0 1.3E-52 2.8E-57 474.4 26.8 253 865-1128 48-306 (312)
26 PRK08605 D-lactate dehydrogena 100.0 4.4E-52 9.5E-57 475.0 29.7 277 843-1128 35-331 (332)
27 KOG0069|consensus 100.0 1.3E-52 2.9E-57 468.3 24.3 263 861-1128 70-334 (336)
28 PRK13243 glyoxylate reductase; 100.0 3.7E-52 8E-57 475.5 28.2 296 45-432 13-315 (333)
29 PLN02306 hydroxypyruvate reduc 100.0 8.2E-52 1.8E-56 478.3 28.5 301 56-433 37-348 (386)
30 PLN03139 formate dehydrogenase 100.0 4.6E-52 1E-56 478.9 24.8 281 56-431 75-366 (386)
31 PRK06436 glycerate dehydrogena 100.0 6.4E-51 1.4E-55 458.2 29.2 240 874-1128 48-288 (303)
32 PRK07574 formate dehydrogenase 100.0 2.5E-51 5.5E-56 473.1 25.0 284 56-434 68-362 (385)
33 PLN02928 oxidoreductase family 100.0 2E-50 4.4E-55 463.1 27.9 279 70-433 51-339 (347)
34 TIGR01327 PGDH D-3-phosphoglyc 100.0 5.2E-50 1.1E-54 482.9 28.0 288 43-431 8-303 (525)
35 PRK15438 erythronate-4-phospha 100.0 2.4E-49 5.1E-54 454.8 29.3 242 851-1123 35-281 (378)
36 PRK13581 D-3-phosphoglycerate 100.0 1.5E-49 3.3E-54 478.9 28.4 289 43-431 9-304 (526)
37 PRK00257 erythronate-4-phospha 100.0 7.3E-49 1.6E-53 452.2 28.0 244 850-1123 34-282 (381)
38 KOG0069|consensus 100.0 6.7E-49 1.4E-53 438.6 19.8 273 69-432 49-328 (336)
39 PRK12480 D-lactate dehydrogena 100.0 8.6E-49 1.9E-53 446.8 20.7 294 56-482 25-320 (330)
40 PRK15438 erythronate-4-phospha 100.0 2.5E-46 5.5E-51 429.8 25.9 251 56-430 19-279 (378)
41 PRK08605 D-lactate dehydrogena 100.0 5.6E-46 1.2E-50 424.8 26.3 267 71-432 36-325 (332)
42 PRK00257 erythronate-4-phospha 100.0 1.2E-45 2.6E-50 425.6 23.8 259 57-439 20-288 (381)
43 PRK15469 ghrA bifunctional gly 100.0 8.1E-44 1.8E-48 402.8 21.2 253 78-432 36-300 (312)
44 PRK06436 glycerate dehydrogena 100.0 1.9E-42 4.2E-47 389.6 26.4 244 78-431 32-282 (303)
45 PF02826 2-Hacid_dh_C: D-isome 100.0 1.5E-43 3.2E-48 371.1 16.1 177 917-1097 1-178 (178)
46 PF02826 2-Hacid_dh_C: D-isome 100.0 2.8E-37 6E-42 323.7 12.0 176 145-413 1-178 (178)
47 KOG0067|consensus 100.0 3.3E-28 7.2E-33 267.9 15.5 256 860-1123 81-340 (435)
48 KOG0067|consensus 99.9 1.7E-23 3.7E-28 230.9 10.9 247 76-417 69-318 (435)
49 PTZ00075 Adenosylhomocysteinas 99.8 5.6E-19 1.2E-23 207.0 17.5 169 882-1080 198-368 (476)
50 TIGR02853 spore_dpaA dipicolin 99.7 1.6E-16 3.5E-21 178.7 10.6 157 862-1053 80-248 (287)
51 PTZ00075 Adenosylhomocysteinas 99.6 4.1E-15 8.8E-20 174.8 12.4 170 109-389 197-367 (476)
52 PF00389 2-Hacid_dh: D-isomer 99.6 8.5E-15 1.8E-19 146.5 12.8 81 834-916 20-101 (133)
53 PF00389 2-Hacid_dh: D-isomer 99.6 7.8E-15 1.7E-19 146.7 10.5 96 42-144 6-101 (133)
54 PLN02494 adenosylhomocysteinas 99.5 3.3E-14 7.2E-19 166.7 10.0 120 953-1077 251-374 (477)
55 PRK08306 dipicolinate synthase 99.4 1.3E-12 2.8E-17 148.1 15.6 151 864-1048 83-243 (296)
56 TIGR00936 ahcY adenosylhomocys 99.4 5.7E-13 1.2E-17 155.5 10.4 146 953-1105 192-345 (406)
57 PRK13403 ketol-acid reductoiso 99.4 7.5E-13 1.6E-17 148.6 8.4 99 951-1051 11-110 (335)
58 TIGR02853 spore_dpaA dipicolin 99.3 4.2E-12 9.2E-17 143.1 8.7 157 91-363 81-248 (287)
59 PLN02712 arogenate dehydrogena 99.2 4.7E-10 1E-14 139.6 20.2 110 953-1063 366-477 (667)
60 PLN02858 fructose-bisphosphate 99.2 1.9E-10 4.2E-15 152.5 15.3 108 955-1062 323-434 (1378)
61 PRK05476 S-adenosyl-L-homocyst 99.1 2.1E-10 4.6E-15 134.9 11.4 154 882-1058 156-312 (425)
62 PF00670 AdoHcyase_NAD: S-aden 99.1 4.8E-10 1E-14 114.9 9.2 102 953-1058 20-123 (162)
63 PLN02494 adenosylhomocysteinas 99.0 1.3E-10 2.8E-15 136.8 4.3 117 260-386 252-373 (477)
64 PF03446 NAD_binding_2: NAD bi 99.0 5.9E-10 1.3E-14 115.6 7.1 114 957-1072 2-118 (163)
65 COG2084 MmsB 3-hydroxyisobutyr 98.9 2.5E-09 5.5E-14 119.5 9.2 111 957-1067 1-116 (286)
66 TIGR01505 tartro_sem_red 2-hyd 98.9 5.1E-09 1.1E-13 118.5 9.3 109 958-1066 1-113 (291)
67 PRK05479 ketol-acid reductoiso 98.9 4.3E-09 9.4E-14 120.2 8.7 122 951-1082 12-135 (330)
68 TIGR00936 ahcY adenosylhomocys 98.9 6.2E-09 1.4E-13 122.0 9.5 143 269-426 200-350 (406)
69 PRK11559 garR tartronate semia 98.8 6.2E-09 1.3E-13 118.0 9.0 111 957-1067 3-117 (296)
70 cd00401 AdoHcyase S-adenosyl-L 98.8 9.3E-09 2E-13 120.9 10.0 102 953-1058 199-302 (413)
71 PRK12490 6-phosphogluconate de 98.8 2.1E-08 4.5E-13 114.2 10.4 111 958-1071 2-117 (299)
72 PRK15461 NADH-dependent gamma- 98.8 1.7E-08 3.7E-13 114.7 9.4 114 957-1072 2-119 (296)
73 PRK08306 dipicolinate synthase 98.7 6.3E-08 1.4E-12 110.1 11.0 169 76-362 51-248 (296)
74 PRK09599 6-phosphogluconate de 98.7 8.1E-08 1.8E-12 109.4 10.2 112 958-1072 2-118 (301)
75 PLN02256 arogenate dehydrogena 98.6 2.4E-07 5.2E-12 105.7 13.4 108 954-1062 34-143 (304)
76 PLN02350 phosphogluconate dehy 98.5 2E-07 4.3E-12 112.2 9.3 119 958-1077 8-138 (493)
77 COG0499 SAM1 S-adenosylhomocys 98.5 2.6E-07 5.7E-12 103.8 9.3 111 953-1067 206-319 (420)
78 PRK15059 tartronate semialdehy 98.5 2.5E-07 5.4E-12 105.0 9.3 113 958-1072 2-117 (292)
79 TIGR00465 ilvC ketol-acid redu 98.5 3E-07 6.6E-12 105.1 8.4 96 954-1051 1-98 (314)
80 PRK05225 ketol-acid reductoiso 98.4 1.4E-07 3.1E-12 110.1 4.9 97 952-1051 32-135 (487)
81 KOG0409|consensus 98.4 6.1E-07 1.3E-11 99.2 9.0 115 953-1067 32-151 (327)
82 PRK13403 ketol-acid reductoiso 98.4 4.6E-07 9.9E-12 102.5 7.7 91 697-788 12-118 (335)
83 PF07991 IlvN: Acetohydroxy ac 98.4 3.4E-07 7.3E-12 93.7 5.7 94 954-1049 2-97 (165)
84 PLN02858 fructose-bisphosphate 98.4 7.2E-07 1.6E-11 119.1 10.3 118 955-1072 3-124 (1378)
85 TIGR00872 gnd_rel 6-phosphoglu 98.4 1.4E-06 3.1E-11 99.1 10.5 108 958-1067 2-114 (298)
86 TIGR01692 HIBADH 3-hydroxyisob 98.3 8.9E-07 1.9E-11 100.3 8.0 109 961-1071 1-113 (288)
87 PLN02545 3-hydroxybutyryl-CoA 98.3 3.1E-06 6.7E-11 96.2 11.9 103 957-1062 5-133 (295)
88 PRK08655 prephenate dehydrogen 98.3 3.3E-06 7.1E-11 101.1 12.1 132 957-1096 1-137 (437)
89 PTZ00142 6-phosphogluconate de 98.3 1.7E-06 3.7E-11 104.1 9.0 118 957-1075 2-130 (470)
90 PRK07502 cyclohexadienyl dehyd 98.2 5.3E-06 1.2E-10 94.8 11.7 146 956-1105 6-161 (307)
91 cd01075 NAD_bind_Leu_Phe_Val_D 98.2 5E-06 1.1E-10 89.4 10.6 109 953-1068 25-136 (200)
92 PLN02712 arogenate dehydrogena 98.2 1.6E-06 3.5E-11 108.4 7.8 109 953-1062 49-159 (667)
93 KOG1370|consensus 98.2 2E-06 4.4E-11 94.3 7.5 93 954-1050 212-305 (434)
94 TIGR00518 alaDH alanine dehydr 98.2 2.6E-06 5.6E-11 99.9 8.6 94 953-1046 164-267 (370)
95 PRK15182 Vi polysaccharide bio 98.2 5.5E-06 1.2E-10 98.8 11.2 135 957-1092 7-173 (425)
96 PRK11064 wecC UDP-N-acetyl-D-m 98.2 5.6E-06 1.2E-10 98.6 11.0 146 957-1107 4-188 (415)
97 TIGR00873 gnd 6-phosphoglucona 98.2 4.2E-06 9.1E-11 100.7 9.0 110 958-1068 1-120 (467)
98 PRK05476 S-adenosyl-L-homocyst 98.1 3.7E-06 8.1E-11 99.5 7.6 58 307-368 254-312 (425)
99 PRK07417 arogenate dehydrogena 98.1 1.3E-05 2.9E-10 90.4 11.5 130 958-1098 2-143 (279)
100 PRK14619 NAD(P)H-dependent gly 98.1 5.5E-06 1.2E-10 94.8 8.0 84 955-1051 3-87 (308)
101 PRK09260 3-hydroxybutyryl-CoA 98.1 2.3E-05 4.9E-10 88.9 12.0 113 957-1073 2-141 (288)
102 PRK07066 3-hydroxybutyryl-CoA 98.0 1.9E-05 4.1E-10 90.7 10.8 104 957-1062 8-133 (321)
103 PRK14194 bifunctional 5,10-met 98.0 1.1E-05 2.4E-10 91.2 8.5 79 953-1050 156-235 (301)
104 PRK11199 tyrA bifunctional cho 98.0 3.8E-05 8.1E-10 90.4 13.1 91 955-1059 97-188 (374)
105 PRK14189 bifunctional 5,10-met 98.0 1.2E-05 2.7E-10 90.2 8.5 120 953-1112 155-275 (285)
106 PLN02688 pyrroline-5-carboxyla 98.0 3.3E-05 7.2E-10 86.3 12.0 101 958-1062 2-109 (266)
107 PRK06545 prephenate dehydrogen 98.0 2.7E-05 5.8E-10 91.2 11.4 134 957-1098 1-150 (359)
108 PF03807 F420_oxidored: NADP o 98.0 6.4E-06 1.4E-10 77.4 4.6 88 958-1048 1-96 (96)
109 COG0287 TyrA Prephenate dehydr 98.0 4.3E-05 9.3E-10 86.2 11.4 143 956-1107 3-155 (279)
110 PRK08293 3-hydroxybutyryl-CoA 98.0 7.4E-05 1.6E-09 84.7 13.2 139 957-1107 4-169 (287)
111 cd01065 NAD_bind_Shikimate_DH 97.9 4.8E-05 1E-09 77.6 10.4 107 954-1065 17-133 (155)
112 PRK13302 putative L-aspartate 97.9 1.7E-05 3.7E-10 89.2 7.6 107 955-1066 5-118 (271)
113 TIGR03026 NDP-sugDHase nucleot 97.9 6.4E-05 1.4E-09 89.5 12.6 134 958-1093 2-174 (411)
114 PRK07530 3-hydroxybutyryl-CoA 97.9 7E-05 1.5E-09 85.0 12.0 138 957-1108 5-169 (292)
115 PRK08507 prephenate dehydrogen 97.9 6.7E-05 1.4E-09 84.5 11.5 97 958-1062 2-103 (275)
116 cd01080 NAD_bind_m-THF_DH_Cycl 97.9 4.1E-05 8.8E-10 80.1 8.8 89 953-1067 41-130 (168)
117 PRK08818 prephenate dehydrogen 97.8 0.00011 2.4E-09 85.9 12.4 122 955-1095 3-130 (370)
118 PRK14188 bifunctional 5,10-met 97.8 4.2E-05 9.2E-10 86.6 8.6 79 953-1050 155-234 (296)
119 PRK14806 bifunctional cyclohex 97.8 8E-05 1.7E-09 95.1 11.7 135 957-1098 4-153 (735)
120 PRK05808 3-hydroxybutyryl-CoA 97.8 0.00017 3.7E-09 81.5 12.5 103 957-1062 4-132 (282)
121 TIGR00561 pntA NAD(P) transhyd 97.8 0.00017 3.8E-09 87.1 13.2 94 953-1047 161-285 (511)
122 PF01488 Shikimate_DH: Shikima 97.8 2.4E-05 5.2E-10 78.9 4.9 97 953-1052 9-115 (135)
123 PRK14618 NAD(P)H-dependent gly 97.8 8.3E-05 1.8E-09 85.8 9.7 100 957-1062 5-123 (328)
124 PRK15057 UDP-glucose 6-dehydro 97.8 0.00014 3.1E-09 85.9 11.7 128 958-1092 2-160 (388)
125 PRK14179 bifunctional 5,10-met 97.7 8.6E-05 1.9E-09 83.5 9.1 126 953-1118 155-281 (284)
126 PRK06035 3-hydroxyacyl-CoA deh 97.7 0.00027 5.8E-09 80.3 12.4 115 957-1075 4-147 (291)
127 PRK12491 pyrroline-5-carboxyla 97.7 5.6E-05 1.2E-09 85.2 6.6 101 957-1061 3-110 (272)
128 PRK07679 pyrroline-5-carboxyla 97.7 0.0001 2.2E-09 83.3 8.0 104 955-1062 2-113 (279)
129 PRK14175 bifunctional 5,10-met 97.6 0.00014 3.1E-09 81.9 8.8 78 953-1049 155-233 (286)
130 PRK08268 3-hydroxy-acyl-CoA de 97.6 0.00026 5.7E-09 86.4 11.3 116 957-1077 8-150 (507)
131 TIGR01724 hmd_rel H2-forming N 97.6 0.00017 3.7E-09 81.5 8.5 91 968-1062 32-129 (341)
132 PRK06129 3-hydroxyacyl-CoA deh 97.6 0.00057 1.2E-08 78.3 13.1 137 957-1106 3-166 (308)
133 PRK05472 redox-sensing transcr 97.6 3.7E-05 8.1E-10 83.4 3.0 129 911-1062 62-201 (213)
134 PRK07531 bifunctional 3-hydrox 97.6 0.00041 8.8E-09 84.7 12.2 104 957-1062 5-130 (495)
135 PRK07819 3-hydroxybutyryl-CoA 97.6 0.00021 4.6E-09 81.0 9.1 115 957-1075 6-147 (286)
136 PRK00094 gpsA NAD(P)H-dependen 97.6 0.00011 2.5E-09 84.2 6.9 93 957-1051 2-110 (325)
137 COG1023 Gnd Predicted 6-phosph 97.6 0.00026 5.7E-09 76.3 8.9 115 957-1074 1-120 (300)
138 PRK06130 3-hydroxybutyryl-CoA 97.5 0.00059 1.3E-08 78.2 12.1 109 957-1068 5-136 (311)
139 TIGR02279 PaaC-3OHAcCoADH 3-hy 97.5 0.0003 6.6E-09 85.7 10.1 116 957-1077 6-148 (503)
140 COG0059 IlvC Ketol-acid reduct 97.5 0.0002 4.3E-09 79.8 6.6 89 953-1042 15-105 (338)
141 PF10727 Rossmann-like: Rossma 97.4 0.00016 3.5E-09 72.1 5.3 90 955-1046 9-104 (127)
142 TIGR01035 hemA glutamyl-tRNA r 97.4 0.00023 4.9E-09 85.0 7.4 98 953-1053 177-284 (417)
143 PRK10792 bifunctional 5,10-met 97.4 0.0006 1.3E-08 76.8 9.8 125 953-1117 156-281 (285)
144 PRK06476 pyrroline-5-carboxyla 97.4 0.00026 5.7E-09 79.0 6.9 100 958-1063 2-108 (258)
145 TIGR03026 NDP-sugDHase nucleot 97.4 0.001 2.2E-08 79.3 12.1 90 953-1045 310-409 (411)
146 COG2085 Predicted dinucleotide 97.4 0.00043 9.3E-09 74.2 7.4 89 957-1048 2-95 (211)
147 PRK09424 pntA NAD(P) transhydr 97.4 0.0011 2.3E-08 80.7 11.8 95 953-1047 162-286 (509)
148 cd05191 NAD_bind_amino_acid_DH 97.4 0.00076 1.7E-08 62.5 8.3 66 953-1046 20-86 (86)
149 PRK07680 late competence prote 97.3 0.00044 9.6E-09 77.8 7.8 100 958-1061 2-109 (273)
150 TIGR01546 GAPDH-II_archae glyc 97.3 0.00042 9.1E-09 79.8 7.6 86 959-1047 1-109 (333)
151 PF02882 THF_DHG_CYH_C: Tetrah 97.3 0.00089 1.9E-08 69.5 9.0 79 953-1050 33-112 (160)
152 PRK14176 bifunctional 5,10-met 97.3 0.00074 1.6E-08 76.1 8.9 77 953-1048 161-238 (287)
153 PF01262 AlaDh_PNT_C: Alanine 97.3 0.00029 6.2E-09 73.7 5.2 94 953-1046 17-139 (168)
154 cd00401 AdoHcyase S-adenosyl-L 97.3 0.00018 4E-09 85.1 3.8 100 260-368 200-302 (413)
155 PRK14178 bifunctional 5,10-met 97.3 0.00072 1.6E-08 76.0 8.2 78 953-1049 149-227 (279)
156 PRK09287 6-phosphogluconate de 97.2 0.00059 1.3E-08 82.2 7.9 109 967-1076 1-119 (459)
157 PRK05479 ketol-acid reductoiso 97.2 0.00054 1.2E-08 78.9 6.8 74 697-771 13-99 (330)
158 PRK06928 pyrroline-5-carboxyla 97.2 0.0012 2.7E-08 74.5 9.3 102 957-1062 2-112 (277)
159 PRK14191 bifunctional 5,10-met 97.2 0.001 2.2E-08 74.9 8.4 122 953-1114 154-276 (285)
160 PF00670 AdoHcyase_NAD: S-aden 97.2 0.00039 8.4E-09 71.9 4.6 61 304-368 62-123 (162)
161 cd05213 NAD_bind_Glutamyl_tRNA 97.2 0.00079 1.7E-08 77.4 7.5 96 954-1051 176-278 (311)
162 PRK08229 2-dehydropantoate 2-r 97.2 0.0013 2.9E-08 76.1 9.3 106 957-1065 3-125 (341)
163 PRK14192 bifunctional 5,10-met 97.1 0.0014 3E-08 74.2 9.0 78 953-1049 156-234 (283)
164 PRK00045 hemA glutamyl-tRNA re 97.1 0.00084 1.8E-08 80.4 7.6 94 953-1049 179-283 (423)
165 PRK11064 wecC UDP-N-acetyl-D-m 97.1 0.016 3.4E-07 69.4 18.2 69 953-1021 317-397 (415)
166 PRK13304 L-aspartate dehydroge 97.1 0.00091 2E-08 75.1 7.1 103 957-1064 2-113 (265)
167 cd05212 NAD_bind_m-THF_DH_Cycl 97.1 0.0038 8.1E-08 63.5 10.3 78 953-1049 25-103 (140)
168 PRK11880 pyrroline-5-carboxyla 97.0 0.0035 7.6E-08 70.1 11.1 99 957-1061 3-107 (267)
169 cd05311 NAD_bind_2_malic_enz N 97.0 0.0061 1.3E-07 67.0 12.5 152 953-1121 22-197 (226)
170 PF01210 NAD_Gly3P_dh_N: NAD-d 97.0 0.00078 1.7E-08 69.6 5.2 90 958-1049 1-106 (157)
171 PF03721 UDPG_MGDP_dh_N: UDP-g 97.0 0.0013 2.9E-08 69.9 7.0 144 957-1105 1-179 (185)
172 PLN00203 glutamyl-tRNA reducta 97.0 0.0015 3.2E-08 79.9 7.7 95 954-1051 264-374 (519)
173 PRK07634 pyrroline-5-carboxyla 96.9 0.0024 5.2E-08 70.4 8.5 104 955-1063 3-114 (245)
174 PRK14190 bifunctional 5,10-met 96.9 0.0036 7.9E-08 70.6 9.9 121 953-1113 155-276 (284)
175 PRK15182 Vi polysaccharide bio 96.9 0.0051 1.1E-07 73.7 11.8 94 953-1051 311-417 (425)
176 PF02737 3HCDH_N: 3-hydroxyacy 96.9 0.0015 3.2E-08 69.3 6.4 112 958-1073 1-138 (180)
177 cd01075 NAD_bind_Leu_Phe_Val_D 96.9 0.0012 2.6E-08 71.1 5.7 37 697-733 24-60 (200)
178 PRK11559 garR tartronate semia 96.9 0.00095 2.1E-08 75.9 5.0 68 308-375 45-115 (296)
179 PRK00258 aroE shikimate 5-dehy 96.9 0.0026 5.7E-08 71.9 8.5 110 953-1063 120-237 (278)
180 COG0677 WecC UDP-N-acetyl-D-ma 96.9 0.0093 2E-07 69.1 12.7 142 957-1105 10-189 (436)
181 TIGR01505 tartro_sem_red 2-hyd 96.8 0.0013 2.7E-08 74.8 5.3 64 312-375 47-112 (291)
182 TIGR01915 npdG NADPH-dependent 96.8 0.002 4.3E-08 70.3 6.3 91 958-1051 2-106 (219)
183 TIGR00465 ilvC ketol-acid redu 96.8 0.0032 6.8E-08 72.5 7.8 36 699-734 1-36 (314)
184 COG0345 ProC Pyrroline-5-carbo 96.7 0.0055 1.2E-07 68.6 9.2 98 957-1062 2-109 (266)
185 PRK12921 2-dehydropantoate 2-r 96.7 0.0047 1E-07 70.3 8.9 105 958-1066 2-121 (305)
186 cd01079 NAD_bind_m-THF_DH NAD 96.7 0.0088 1.9E-07 63.7 10.2 90 951-1047 57-157 (197)
187 PRK06522 2-dehydropantoate 2-r 96.7 0.008 1.7E-07 68.3 10.4 106 958-1067 2-120 (304)
188 PRK14170 bifunctional 5,10-met 96.7 0.0084 1.8E-07 67.6 10.2 125 953-1117 154-279 (284)
189 COG0686 Ald Alanine dehydrogen 96.7 0.0032 6.9E-08 70.6 6.6 93 953-1046 165-268 (371)
190 KOG2380|consensus 96.7 0.0025 5.3E-08 71.8 5.7 134 956-1097 52-192 (480)
191 PRK14183 bifunctional 5,10-met 96.7 0.0057 1.2E-07 68.9 8.6 78 953-1049 154-232 (281)
192 PRK05225 ketol-acid reductoiso 96.6 0.00079 1.7E-08 79.5 1.6 90 259-361 33-135 (487)
193 PRK14173 bifunctional 5,10-met 96.6 0.0075 1.6E-07 68.2 9.0 130 953-1121 152-284 (287)
194 PRK14166 bifunctional 5,10-met 96.6 0.0073 1.6E-07 68.1 8.8 78 953-1049 154-232 (282)
195 PRK14172 bifunctional 5,10-met 96.6 0.011 2.5E-07 66.4 10.3 78 953-1049 155-233 (278)
196 PRK14169 bifunctional 5,10-met 96.6 0.0076 1.6E-07 68.0 8.8 121 953-1113 153-274 (282)
197 PRK12557 H(2)-dependent methyl 96.5 0.0052 1.1E-07 71.6 7.6 93 968-1061 32-132 (342)
198 PRK14171 bifunctional 5,10-met 96.5 0.012 2.7E-07 66.4 10.0 121 953-1113 156-277 (288)
199 PLN02353 probable UDP-glucose 96.5 0.033 7.2E-07 67.6 14.4 135 957-1092 2-176 (473)
200 PRK06141 ornithine cyclodeamin 96.4 0.006 1.3E-07 70.3 7.3 86 955-1046 124-219 (314)
201 PRK14177 bifunctional 5,10-met 96.4 0.011 2.3E-07 66.8 8.9 78 953-1049 156-234 (284)
202 PRK14186 bifunctional 5,10-met 96.4 0.015 3.2E-07 66.1 10.1 126 953-1114 155-281 (297)
203 cd01076 NAD_bind_1_Glu_DH NAD( 96.4 0.016 3.4E-07 63.8 9.8 108 953-1068 28-156 (227)
204 PRK14187 bifunctional 5,10-met 96.4 0.011 2.5E-07 66.9 8.8 78 953-1049 157-235 (294)
205 COG0190 FolD 5,10-methylene-te 96.3 0.011 2.4E-07 66.1 8.1 119 953-1111 153-272 (283)
206 PLN02516 methylenetetrahydrofo 96.3 0.013 2.8E-07 66.6 8.8 132 953-1119 164-297 (299)
207 cd01078 NAD_bind_H4MPT_DH NADP 96.3 0.011 2.4E-07 63.0 7.7 96 953-1052 25-135 (194)
208 PRK12490 6-phosphogluconate de 96.3 0.0075 1.6E-07 68.9 6.7 72 307-381 42-117 (299)
209 PRK14982 acyl-ACP reductase; P 96.2 0.012 2.7E-07 68.1 8.5 96 953-1054 152-254 (340)
210 PRK14184 bifunctional 5,10-met 96.2 0.013 2.8E-07 66.3 8.4 77 953-1048 154-235 (286)
211 PRK14182 bifunctional 5,10-met 96.2 0.016 3.4E-07 65.5 8.9 79 953-1050 154-233 (282)
212 TIGR00507 aroE shikimate 5-deh 96.2 0.02 4.4E-07 64.4 9.9 106 954-1064 115-230 (270)
213 PF02153 PDH: Prephenate dehyd 96.2 0.018 4E-07 64.4 9.4 124 971-1097 1-133 (258)
214 PLN02897 tetrahydrofolate dehy 96.2 0.016 3.4E-07 66.9 8.8 126 953-1113 211-338 (345)
215 PRK07340 ornithine cyclodeamin 96.2 0.011 2.4E-07 67.9 7.6 88 955-1049 124-220 (304)
216 PRK14174 bifunctional 5,10-met 96.2 0.016 3.4E-07 66.0 8.7 78 953-1049 156-238 (295)
217 PRK15461 NADH-dependent gamma- 96.2 0.0061 1.3E-07 69.6 5.4 69 312-382 49-119 (296)
218 PRK14180 bifunctional 5,10-met 96.2 0.018 3.8E-07 65.1 8.8 78 953-1049 155-233 (282)
219 TIGR02371 ala_DH_arch alanine 96.1 0.014 3.1E-07 67.6 8.3 87 956-1048 128-224 (325)
220 PRK14181 bifunctional 5,10-met 96.1 0.018 3.9E-07 65.1 8.8 79 953-1050 150-233 (287)
221 PRK13940 glutamyl-tRNA reducta 96.1 0.012 2.6E-07 70.3 7.5 91 953-1048 178-275 (414)
222 PRK06249 2-dehydropantoate 2-r 96.1 0.064 1.4E-06 61.7 13.3 108 957-1068 6-127 (313)
223 PLN02616 tetrahydrofolate dehy 96.1 0.019 4.1E-07 66.5 8.8 78 953-1049 228-306 (364)
224 PRK14193 bifunctional 5,10-met 96.1 0.02 4.4E-07 64.7 8.8 119 953-1112 155-276 (284)
225 PRK09310 aroDE bifunctional 3- 96.1 0.0094 2E-07 72.5 6.7 68 954-1021 330-401 (477)
226 cd05211 NAD_bind_Glu_Leu_Phe_V 96.0 0.087 1.9E-06 57.6 13.1 107 953-1067 20-146 (217)
227 PF03446 NAD_binding_2: NAD bi 95.9 0.0084 1.8E-07 62.3 4.6 89 702-793 2-104 (163)
228 TIGR02354 thiF_fam2 thiamine b 95.9 0.015 3.3E-07 62.7 6.7 92 953-1045 18-144 (200)
229 PTZ00431 pyrroline carboxylate 95.9 0.014 3.1E-07 65.3 6.7 97 956-1062 3-104 (260)
230 cd05313 NAD_bind_2_Glu_DH NAD( 95.9 0.079 1.7E-06 59.2 12.1 156 953-1119 35-221 (254)
231 COG0373 HemA Glutamyl-tRNA red 95.8 0.018 3.9E-07 68.1 7.3 98 953-1053 175-281 (414)
232 PRK14185 bifunctional 5,10-met 95.8 0.031 6.6E-07 63.5 8.7 78 953-1049 154-236 (293)
233 PRK14168 bifunctional 5,10-met 95.7 0.037 8E-07 63.0 8.8 131 953-1119 158-295 (297)
234 PF13241 NAD_binding_7: Putati 95.7 0.0073 1.6E-07 58.0 2.8 88 953-1046 4-91 (103)
235 TIGR01470 cysG_Nterm siroheme 95.6 0.019 4.1E-07 62.2 6.1 90 951-1045 4-99 (205)
236 PRK00676 hemA glutamyl-tRNA re 95.6 0.035 7.7E-07 64.3 8.5 95 953-1051 171-266 (338)
237 PRK14031 glutamate dehydrogena 95.6 0.04 8.8E-07 65.9 9.1 155 953-1118 225-409 (444)
238 COG1064 AdhP Zn-dependent alco 95.6 0.026 5.7E-07 65.2 7.2 86 955-1046 166-259 (339)
239 TIGR02992 ectoine_eutC ectoine 95.5 0.038 8.1E-07 64.1 8.4 87 955-1047 128-225 (326)
240 PRK14167 bifunctional 5,10-met 95.5 0.045 9.8E-07 62.3 8.7 124 953-1112 154-283 (297)
241 COG1712 Predicted dinucleotide 95.5 0.016 3.4E-07 62.6 4.7 94 958-1056 2-101 (255)
242 PF01408 GFO_IDH_MocA: Oxidore 95.4 0.021 4.6E-07 55.5 5.0 63 958-1020 2-72 (120)
243 PRK12549 shikimate 5-dehydroge 95.4 0.056 1.2E-06 61.5 9.1 68 954-1021 125-203 (284)
244 PRK06444 prephenate dehydrogen 95.4 0.026 5.6E-07 60.7 6.0 61 958-1050 2-63 (197)
245 TIGR01763 MalateDH_bact malate 95.4 0.03 6.4E-07 64.4 6.7 113 957-1071 2-147 (305)
246 TIGR01921 DAP-DH diaminopimela 95.3 0.035 7.6E-07 64.0 7.2 107 957-1068 4-117 (324)
247 PTZ00117 malate dehydrogenase; 95.3 0.042 9.1E-07 63.5 7.9 116 955-1071 4-151 (319)
248 PRK09414 glutamate dehydrogena 95.3 0.067 1.5E-06 64.2 9.7 109 953-1068 229-364 (445)
249 PRK14030 glutamate dehydrogena 95.3 0.18 3.8E-06 60.6 13.1 156 953-1119 225-411 (445)
250 PRK08618 ornithine cyclodeamin 95.3 0.046 9.9E-07 63.4 8.0 87 955-1048 126-223 (325)
251 PF02423 OCD_Mu_crystall: Orni 95.3 0.042 9.1E-07 63.4 7.6 90 957-1050 129-228 (313)
252 PRK00856 pyrB aspartate carbam 95.2 0.23 4.9E-06 57.2 13.1 64 954-1018 154-221 (305)
253 PRK11730 fadB multifunctional 95.1 0.079 1.7E-06 67.7 10.2 115 957-1075 314-454 (715)
254 PRK13301 putative L-aspartate 95.1 0.051 1.1E-06 60.7 7.2 101 957-1062 3-112 (267)
255 PF03720 UDPG_MGDP_dh_C: UDP-g 95.0 0.047 1E-06 52.8 5.9 78 967-1045 18-100 (106)
256 TIGR02440 FadJ fatty oxidation 95.0 0.091 2E-06 67.0 10.2 114 957-1074 305-445 (699)
257 PRK12439 NAD(P)H-dependent gly 95.0 0.031 6.7E-07 65.2 5.5 92 957-1051 8-116 (341)
258 COG0362 Gnd 6-phosphogluconate 94.9 0.28 6E-06 57.1 12.6 157 957-1125 4-170 (473)
259 PRK09599 6-phosphogluconate de 94.9 0.046 9.9E-07 62.6 6.6 73 307-382 42-118 (301)
260 PRK08291 ectoine utilization p 94.8 0.066 1.4E-06 62.2 7.7 85 955-1045 131-226 (330)
261 PRK00779 ornithine carbamoyltr 94.8 0.39 8.4E-06 55.3 13.7 92 954-1045 150-264 (304)
262 COG1748 LYS9 Saccharopine dehy 94.8 0.074 1.6E-06 62.7 7.9 89 957-1051 2-104 (389)
263 PRK06046 alanine dehydrogenase 94.8 0.077 1.7E-06 61.5 8.0 85 956-1047 129-224 (326)
264 PF00208 ELFV_dehydrog: Glutam 94.7 0.13 2.9E-06 57.2 9.3 153 953-1118 29-213 (244)
265 smart00859 Semialdhyde_dh Semi 94.7 0.063 1.4E-06 52.8 6.1 88 958-1047 1-100 (122)
266 TIGR02441 fa_ox_alpha_mit fatt 94.6 0.097 2.1E-06 67.1 9.0 115 957-1075 336-476 (737)
267 PRK06718 precorrin-2 dehydroge 94.6 0.054 1.2E-06 58.6 5.7 76 949-1024 3-84 (202)
268 PLN02477 glutamate dehydrogena 94.6 0.32 7E-06 58.0 12.7 147 953-1119 203-378 (410)
269 KOG0023|consensus 94.6 0.066 1.4E-06 60.8 6.4 88 955-1045 181-278 (360)
270 PRK11154 fadJ multifunctional 94.5 0.15 3.2E-06 65.3 10.4 114 957-1074 310-450 (708)
271 COG0334 GdhA Glutamate dehydro 94.5 0.1 2.3E-06 61.3 8.1 146 954-1119 205-379 (411)
272 PRK14620 NAD(P)H-dependent gly 94.5 0.063 1.4E-06 62.0 6.4 90 958-1049 2-109 (326)
273 PF13478 XdhC_C: XdhC Rossmann 94.5 0.089 1.9E-06 53.3 6.7 86 959-1070 1-86 (136)
274 TIGR03376 glycerol3P_DH glycer 94.5 0.07 1.5E-06 62.2 6.7 93 958-1052 1-122 (342)
275 PRK01710 murD UDP-N-acetylmura 94.4 0.14 2.9E-06 62.3 9.4 110 953-1063 11-142 (458)
276 COG0026 PurK Phosphoribosylami 94.4 0.066 1.4E-06 62.0 6.3 61 956-1016 1-68 (375)
277 TIGR02356 adenyl_thiF thiazole 94.4 0.023 4.9E-07 61.4 2.4 83 953-1036 18-136 (202)
278 PRK06719 precorrin-2 dehydroge 94.4 0.066 1.4E-06 55.6 5.7 70 949-1019 6-79 (157)
279 TIGR00658 orni_carb_tr ornithi 94.4 0.6 1.3E-05 53.8 14.0 92 954-1045 146-263 (304)
280 TIGR02964 xanthine_xdhC xanthi 94.3 0.15 3.3E-06 56.8 8.7 91 957-1068 101-191 (246)
281 COG0499 SAM1 S-adenosylhomocys 94.2 0.052 1.1E-06 62.2 4.8 123 254-384 201-325 (420)
282 COG0240 GpsA Glycerol-3-phosph 94.2 0.086 1.9E-06 60.6 6.5 99 957-1057 2-116 (329)
283 TIGR01809 Shik-DH-AROM shikima 94.2 0.067 1.5E-06 60.8 5.7 68 954-1021 123-201 (282)
284 PRK13303 L-aspartate dehydroge 94.2 0.11 2.5E-06 58.4 7.5 103 957-1064 2-113 (265)
285 TIGR00670 asp_carb_tr aspartat 94.2 0.8 1.7E-05 52.6 14.3 95 954-1049 148-267 (301)
286 PRK06823 ornithine cyclodeamin 94.1 0.13 2.9E-06 59.3 8.1 86 956-1047 128-223 (315)
287 TIGR02437 FadB fatty oxidation 94.1 0.2 4.3E-06 64.1 10.3 113 957-1073 314-452 (714)
288 PF13380 CoA_binding_2: CoA bi 94.1 0.16 3.4E-06 50.1 7.3 101 957-1068 1-106 (116)
289 PRK06199 ornithine cyclodeamin 94.0 0.11 2.4E-06 61.5 7.2 91 956-1049 155-262 (379)
290 PRK01713 ornithine carbamoyltr 94.0 0.78 1.7E-05 53.5 14.0 93 954-1046 154-275 (334)
291 PRK02102 ornithine carbamoyltr 93.9 0.62 1.3E-05 54.2 12.8 64 954-1017 153-231 (331)
292 PF02558 ApbA: Ketopantoate re 93.9 0.052 1.1E-06 55.2 3.6 106 959-1068 1-122 (151)
293 COG1250 FadB 3-hydroxyacyl-CoA 93.8 0.31 6.7E-06 55.9 9.9 116 956-1075 3-144 (307)
294 TIGR00518 alaDH alanine dehydr 93.6 0.038 8.2E-07 65.2 2.4 49 313-361 223-274 (370)
295 PTZ00345 glycerol-3-phosphate 93.6 0.16 3.5E-06 59.8 7.4 96 956-1053 11-136 (365)
296 COG1004 Ugd Predicted UDP-gluc 93.5 0.4 8.7E-06 56.2 10.3 135 957-1092 1-169 (414)
297 PRK04284 ornithine carbamoyltr 93.5 0.82 1.8E-05 53.3 12.9 92 954-1045 153-273 (332)
298 PLN02527 aspartate carbamoyltr 93.5 1 2.3E-05 51.8 13.6 92 954-1045 149-265 (306)
299 TIGR01850 argC N-acetyl-gamma- 93.5 0.16 3.4E-06 59.5 7.1 86 957-1048 1-101 (346)
300 PTZ00082 L-lactate dehydrogena 93.4 0.19 4E-06 58.3 7.6 114 955-1069 5-153 (321)
301 PRK03369 murD UDP-N-acetylmura 93.4 0.12 2.7E-06 63.1 6.4 108 954-1062 10-141 (488)
302 PF01113 DapB_N: Dihydrodipico 93.4 0.12 2.5E-06 51.5 5.1 100 958-1062 2-114 (124)
303 PF01118 Semialdhyde_dh: Semia 93.4 0.1 2.3E-06 51.4 4.7 86 958-1048 1-99 (121)
304 PRK12475 thiamine/molybdopteri 93.3 0.091 2E-06 61.3 4.7 80 953-1033 21-138 (338)
305 PRK00048 dihydrodipicolinate r 93.2 0.18 3.8E-06 56.6 6.8 63 957-1019 2-69 (257)
306 TIGR01546 GAPDH-II_archae glyc 93.1 0.045 9.8E-07 63.4 2.0 41 313-356 68-108 (333)
307 cd00650 LDH_MDH_like NAD-depen 93.1 0.12 2.6E-06 58.0 5.3 115 959-1074 1-150 (263)
308 PLN02342 ornithine carbamoyltr 93.1 1.2 2.6E-05 52.1 13.6 92 954-1045 192-306 (348)
309 cd05291 HicDH_like L-2-hydroxy 93.1 0.2 4.4E-06 57.5 7.1 91 957-1047 1-118 (306)
310 PLN02256 arogenate dehydrogena 93.1 0.11 2.3E-06 59.8 4.9 35 699-733 34-68 (304)
311 COG2084 MmsB 3-hydroxyisobutyr 93.0 0.07 1.5E-06 60.5 3.2 105 269-376 5-115 (286)
312 COG2423 Predicted ornithine cy 92.9 0.4 8.7E-06 55.6 9.1 86 956-1047 130-226 (330)
313 PTZ00079 NADP-specific glutama 92.8 1 2.2E-05 54.3 12.6 155 953-1118 234-419 (454)
314 PRK06407 ornithine cyclodeamin 92.7 0.32 6.9E-06 55.9 8.0 86 956-1047 117-213 (301)
315 PRK07589 ornithine cyclodeamin 92.7 0.33 7.1E-06 56.8 8.2 88 956-1047 129-226 (346)
316 PRK06223 malate dehydrogenase; 92.5 0.25 5.4E-06 56.6 7.0 114 957-1071 3-148 (307)
317 PRK05472 redox-sensing transcr 92.5 0.056 1.2E-06 58.8 1.5 60 313-372 137-201 (213)
318 PF03807 F420_oxidored: NADP o 92.5 0.12 2.6E-06 48.4 3.5 34 703-736 1-37 (96)
319 PF00185 OTCace: Aspartate/orn 92.4 0.57 1.2E-05 48.7 8.7 92 955-1046 1-120 (158)
320 COG0569 TrkA K+ transport syst 92.4 0.16 3.4E-06 55.9 4.8 67 957-1023 1-79 (225)
321 PRK02255 putrescine carbamoylt 92.3 1.6 3.4E-05 51.0 13.2 94 953-1046 151-272 (338)
322 TIGR01692 HIBADH 3-hydroxyisob 92.2 0.085 1.8E-06 60.0 2.5 73 307-381 38-113 (288)
323 PRK05690 molybdopterin biosynt 92.0 0.16 3.5E-06 56.6 4.4 82 953-1035 29-146 (245)
324 PLN02520 bifunctional 3-dehydr 92.0 0.4 8.6E-06 59.3 8.1 68 953-1020 376-449 (529)
325 KOG2653|consensus 92.0 1.5 3.2E-05 50.6 11.7 158 957-1125 7-174 (487)
326 PRK04207 glyceraldehyde-3-phos 91.9 0.31 6.7E-06 57.0 6.8 64 958-1021 3-89 (341)
327 COG0169 AroE Shikimate 5-dehyd 91.8 0.67 1.4E-05 52.8 9.1 106 954-1063 124-242 (283)
328 PRK13814 pyrB aspartate carbam 91.8 1.9 4.1E-05 49.8 12.9 63 954-1016 155-223 (310)
329 cd00757 ThiF_MoeB_HesA_family 91.7 0.085 1.8E-06 58.0 1.8 150 953-1123 18-206 (228)
330 PRK06019 phosphoribosylaminoim 91.7 0.29 6.4E-06 57.7 6.4 61 956-1016 2-69 (372)
331 PRK11891 aspartate carbamoyltr 91.7 3.2 7E-05 49.9 14.9 92 954-1045 239-354 (429)
332 cd01076 NAD_bind_1_Glu_DH NAD( 91.7 0.41 9E-06 52.7 7.0 36 697-732 27-62 (227)
333 cd05211 NAD_bind_Glu_Leu_Phe_V 91.5 0.44 9.5E-06 52.2 7.0 37 697-733 19-55 (217)
334 PRK03515 ornithine carbamoyltr 91.5 1.8 3.9E-05 50.5 12.4 64 954-1017 154-232 (336)
335 cd05313 NAD_bind_2_Glu_DH NAD( 91.4 0.51 1.1E-05 52.8 7.5 36 697-732 34-69 (254)
336 cd08230 glucose_DH Glucose deh 91.4 0.36 7.8E-06 56.2 6.7 88 955-1047 172-270 (355)
337 PRK12548 shikimate 5-dehydroge 91.4 0.32 6.8E-06 55.5 6.0 68 954-1021 124-210 (289)
338 TIGR01035 hemA glutamyl-tRNA r 91.4 0.28 6E-06 58.9 5.8 72 699-770 178-263 (417)
339 PRK02006 murD UDP-N-acetylmura 91.4 0.38 8.3E-06 59.0 7.1 112 953-1064 4-147 (498)
340 PRK09880 L-idonate 5-dehydroge 91.4 0.49 1.1E-05 54.9 7.7 89 955-1048 169-268 (343)
341 PRK07066 3-hydroxybutyryl-CoA 91.4 0.68 1.5E-05 53.7 8.7 33 702-734 8-40 (321)
342 PRK01390 murD UDP-N-acetylmura 91.3 0.36 7.7E-06 58.6 6.8 110 953-1062 6-138 (460)
343 KOG1370|consensus 91.2 0.28 6.1E-06 55.1 5.0 50 306-359 255-304 (434)
344 PRK08269 3-hydroxybutyryl-CoA 91.2 1.8 3.8E-05 50.1 11.9 93 967-1061 1-128 (314)
345 PRK00066 ldh L-lactate dehydro 91.1 0.37 8.1E-06 55.7 6.3 93 955-1047 5-123 (315)
346 COG0771 MurD UDP-N-acetylmuram 91.1 0.4 8.6E-06 57.7 6.6 122 954-1076 5-156 (448)
347 PRK00683 murD UDP-N-acetylmura 91.1 0.47 1E-05 56.9 7.3 106 956-1062 3-126 (418)
348 PRK14106 murD UDP-N-acetylmura 91.0 0.47 1E-05 57.2 7.3 110 953-1062 2-132 (450)
349 PRK14619 NAD(P)H-dependent gly 91.0 0.26 5.6E-06 56.7 4.8 57 700-764 3-66 (308)
350 PLN02968 Probable N-acetyl-gam 91.0 0.38 8.2E-06 57.1 6.2 99 954-1058 36-146 (381)
351 cd05312 NAD_bind_1_malic_enz N 90.9 3.7 8.1E-05 46.6 13.7 160 953-1122 22-224 (279)
352 PLN02350 phosphogluconate dehy 90.9 0.31 6.8E-06 59.5 5.6 75 312-387 61-138 (493)
353 PRK07688 thiamine/molybdopteri 90.9 0.27 5.8E-06 57.4 4.8 37 953-989 21-58 (339)
354 PRK13302 putative L-aspartate 90.8 0.12 2.7E-06 58.3 2.0 102 269-375 11-117 (271)
355 PRK02472 murD UDP-N-acetylmura 90.8 1.2 2.7E-05 53.6 10.6 110 953-1062 2-132 (447)
356 PLN02353 probable UDP-glucose 90.7 0.87 1.9E-05 55.5 9.2 101 953-1057 321-456 (473)
357 COG1648 CysG Siroheme synthase 90.6 0.39 8.4E-06 52.3 5.4 89 951-1045 7-102 (210)
358 cd05292 LDH_2 A subgroup of L- 90.6 0.41 8.9E-06 55.1 5.9 89 958-1046 2-116 (308)
359 PLN02545 3-hydroxybutyryl-CoA 90.5 0.28 6.1E-06 55.9 4.5 34 702-735 5-38 (295)
360 PRK10669 putative cation:proto 90.5 0.32 6.9E-06 60.6 5.4 86 957-1044 418-513 (558)
361 PRK00421 murC UDP-N-acetylmura 90.5 0.54 1.2E-05 57.1 7.3 111 954-1064 5-133 (461)
362 cd05293 LDH_1 A subgroup of L- 90.5 0.78 1.7E-05 53.0 8.1 113 957-1070 4-146 (312)
363 PRK09496 trkA potassium transp 90.5 0.29 6.3E-06 59.0 4.8 67 957-1023 1-78 (453)
364 KOG0409|consensus 90.4 0.27 5.9E-06 55.5 4.1 93 700-794 34-141 (327)
365 PRK00141 murD UDP-N-acetylmura 90.4 0.44 9.6E-06 58.1 6.4 111 953-1063 12-146 (473)
366 PRK14189 bifunctional 5,10-met 90.4 0.46 1E-05 54.0 6.0 71 697-776 154-228 (285)
367 PRK03659 glutathione-regulated 90.3 0.42 9.1E-06 60.1 6.2 91 956-1048 400-500 (601)
368 cd05191 NAD_bind_amino_acid_DH 90.2 0.51 1.1E-05 43.7 5.2 35 698-732 20-55 (86)
369 COG0673 MviM Predicted dehydro 90.0 0.47 1E-05 54.7 5.9 65 957-1021 4-78 (342)
370 cd01486 Apg7 Apg7 is an E1-lik 89.9 0.51 1.1E-05 53.9 5.8 85 958-1046 1-140 (307)
371 cd05297 GH4_alpha_glucosidase_ 89.9 0.43 9.3E-06 57.5 5.6 104 958-1061 2-160 (423)
372 PRK12749 quinate/shikimate deh 89.9 0.62 1.4E-05 53.2 6.6 68 954-1021 122-207 (288)
373 cd00300 LDH_like L-lactate deh 89.9 0.64 1.4E-05 53.3 6.8 109 959-1068 1-139 (300)
374 PRK00436 argC N-acetyl-gamma-g 89.9 0.61 1.3E-05 54.6 6.6 91 957-1053 3-106 (343)
375 COG1712 Predicted dinucleotide 89.8 0.43 9.3E-06 51.9 4.8 32 703-735 2-37 (255)
376 PRK07417 arogenate dehydrogena 89.7 0.36 7.7E-06 54.7 4.5 31 703-733 2-32 (279)
377 PRK09414 glutamate dehydrogena 89.7 0.64 1.4E-05 56.0 6.8 36 697-732 228-263 (445)
378 PRK11579 putative oxidoreducta 89.7 0.66 1.4E-05 54.2 6.8 65 957-1021 5-75 (346)
379 PRK12562 ornithine carbamoyltr 89.7 5.5 0.00012 46.5 14.2 93 954-1046 154-275 (334)
380 PRK06270 homoserine dehydrogen 89.7 1 2.2E-05 52.7 8.3 108 958-1065 4-145 (341)
381 cd00762 NAD_bind_malic_enz NAD 89.7 2.3 4.9E-05 47.6 10.5 164 953-1120 22-223 (254)
382 cd01339 LDH-like_MDH L-lactate 89.7 0.42 9.2E-06 54.7 5.1 109 959-1069 1-140 (300)
383 PF02254 TrkA_N: TrkA-N domain 89.6 0.51 1.1E-05 45.6 4.9 83 959-1043 1-93 (116)
384 COG1023 Gnd Predicted 6-phosph 89.6 0.32 6.9E-06 53.2 3.7 33 702-734 1-33 (300)
385 PRK14027 quinate/shikimate deh 89.4 0.53 1.2E-05 53.6 5.6 68 954-1021 125-205 (283)
386 PRK05600 thiamine biosynthesis 89.4 0.35 7.6E-06 57.1 4.3 36 953-988 38-74 (370)
387 COG1004 Ugd Predicted UDP-gluc 89.4 0.91 2E-05 53.4 7.4 81 954-1037 308-400 (414)
388 PRK03562 glutathione-regulated 89.3 0.54 1.2E-05 59.4 6.1 88 956-1045 400-497 (621)
389 PRK14030 glutamate dehydrogena 89.3 0.77 1.7E-05 55.3 7.0 33 697-729 224-256 (445)
390 PRK08644 thiamine biosynthesis 89.2 0.66 1.4E-05 50.6 6.0 36 953-988 25-61 (212)
391 cd05188 MDR Medium chain reduc 89.2 1.5 3.2E-05 47.9 8.8 91 955-1050 134-236 (271)
392 COG3288 PntA NAD/NADP transhyd 89.2 0.48 1E-05 53.6 4.8 93 953-1046 161-281 (356)
393 TIGR02355 moeB molybdopterin s 89.1 0.61 1.3E-05 51.9 5.6 37 953-989 21-58 (240)
394 PF03435 Saccharop_dh: Sacchar 89.0 0.45 9.9E-06 56.3 4.9 81 959-1045 1-97 (386)
395 PRK14194 bifunctional 5,10-met 89.0 0.7 1.5E-05 52.9 6.0 40 696-735 154-194 (301)
396 PLN02819 lysine-ketoglutarate 88.9 0.98 2.1E-05 59.7 8.1 67 954-1020 567-658 (1042)
397 TIGR00561 pntA NAD(P) transhyd 88.9 0.2 4.3E-06 61.3 1.8 87 42-131 16-113 (511)
398 cd01492 Aos1_SUMO Ubiquitin ac 88.8 0.56 1.2E-05 50.6 4.9 37 953-989 18-55 (197)
399 PRK05086 malate dehydrogenase; 88.7 1.2 2.5E-05 51.6 7.8 93 957-1049 1-121 (312)
400 PRK12491 pyrroline-5-carboxyla 88.7 0.4 8.6E-06 54.3 3.9 98 269-371 7-110 (272)
401 PRK08762 molybdopterin biosynt 88.6 0.85 1.8E-05 54.0 6.8 72 895-988 96-168 (376)
402 PRK06484 short chain dehydroge 88.5 5.6 0.00012 48.8 14.1 38 953-990 266-304 (520)
403 PRK10637 cysG siroheme synthas 88.5 0.77 1.7E-05 55.9 6.4 93 949-1046 5-103 (457)
404 PLN02272 glyceraldehyde-3-phos 88.5 0.44 9.6E-06 56.7 4.2 32 702-733 86-119 (421)
405 PRK14031 glutamate dehydrogena 88.4 0.96 2.1E-05 54.5 7.0 37 696-732 223-259 (444)
406 PRK04690 murD UDP-N-acetylmura 88.3 0.87 1.9E-05 55.5 6.8 108 954-1062 6-139 (468)
407 PLN02586 probable cinnamyl alc 88.3 1.4 3.1E-05 51.5 8.4 88 955-1047 183-279 (360)
408 KOG0023|consensus 88.3 0.42 9.1E-06 54.5 3.7 38 700-737 181-218 (360)
409 PF13460 NAD_binding_10: NADH( 88.3 0.73 1.6E-05 48.0 5.3 64 959-1023 1-73 (183)
410 TIGR02822 adh_fam_2 zinc-bindi 88.3 0.99 2.1E-05 52.2 6.9 88 955-1047 165-255 (329)
411 TIGR03366 HpnZ_proposed putati 88.3 0.98 2.1E-05 50.8 6.7 45 955-999 120-166 (280)
412 TIGR00872 gnd_rel 6-phosphoglu 88.2 0.95 2.1E-05 51.8 6.7 62 313-376 49-113 (298)
413 PF02737 3HCDH_N: 3-hydroxyacy 88.1 0.58 1.3E-05 49.6 4.5 32 703-734 1-32 (180)
414 PF07991 IlvN: Acetohydroxy ac 88.1 0.52 1.1E-05 49.1 3.9 35 699-733 2-36 (165)
415 PRK01368 murD UDP-N-acetylmura 88.0 0.98 2.1E-05 54.9 6.9 107 954-1062 4-128 (454)
416 PLN02948 phosphoribosylaminoim 87.9 1.1 2.4E-05 56.0 7.5 68 953-1020 19-93 (577)
417 PF05222 AlaDh_PNT_N: Alanine 87.9 2.4 5.2E-05 43.0 8.6 96 970-1075 18-119 (136)
418 cd01065 NAD_bind_Shikimate_DH 87.8 0.71 1.5E-05 46.9 4.8 36 698-733 16-52 (155)
419 PF00056 Ldh_1_N: lactate/mala 87.8 0.38 8.2E-06 49.0 2.7 91 958-1048 2-120 (141)
420 TIGR01161 purK phosphoribosyla 87.7 1 2.2E-05 52.6 6.7 59 958-1016 1-66 (352)
421 PRK04308 murD UDP-N-acetylmura 87.7 1.1 2.3E-05 54.3 7.0 111 953-1063 2-135 (445)
422 PTZ00142 6-phosphogluconate de 87.7 0.66 1.4E-05 56.5 5.1 75 312-387 55-132 (470)
423 PRK05597 molybdopterin biosynt 87.6 0.48 1E-05 55.7 3.8 37 953-989 25-62 (355)
424 TIGR03316 ygeW probable carbam 87.6 6.1 0.00013 46.6 12.8 65 953-1017 167-252 (357)
425 PRK05708 2-dehydropantoate 2-r 87.5 1.7 3.8E-05 49.9 8.2 109 957-1068 3-125 (305)
426 PLN02477 glutamate dehydrogena 87.5 1.2 2.6E-05 53.2 7.0 36 697-732 202-237 (410)
427 PRK08223 hypothetical protein; 87.5 1.2 2.6E-05 50.8 6.6 37 953-989 24-61 (287)
428 PF03447 NAD_binding_3: Homose 87.3 0.63 1.4E-05 45.4 3.9 84 963-1051 1-95 (117)
429 COG0334 GdhA Glutamate dehydro 87.2 1.6 3.5E-05 51.6 7.8 49 696-744 202-253 (411)
430 PRK08192 aspartate carbamoyltr 87.2 7.3 0.00016 45.6 13.1 65 953-1017 156-233 (338)
431 PRK01438 murD UDP-N-acetylmura 87.2 1 2.3E-05 54.9 6.5 110 953-1062 13-146 (480)
432 PRK06545 prephenate dehydrogen 87.2 0.56 1.2E-05 55.2 4.1 33 702-734 1-33 (359)
433 TIGR01381 E1_like_apg7 E1-like 87.1 1.2 2.6E-05 55.7 6.8 130 896-1048 294-482 (664)
434 PRK07232 bifunctional malic en 87.1 4.9 0.00011 51.6 12.5 159 897-1097 152-325 (752)
435 PRK04148 hypothetical protein; 86.9 1.5 3.2E-05 44.5 6.3 64 955-1019 16-86 (134)
436 PRK03806 murD UDP-N-acetylmura 86.9 2.1 4.6E-05 51.6 8.9 109 953-1062 3-129 (438)
437 PRK12862 malic enzyme; Reviewe 86.6 6.3 0.00014 50.9 13.1 179 898-1120 161-361 (763)
438 PRK15059 tartronate semialdehy 86.6 0.46 1E-05 54.3 2.8 109 269-382 5-117 (292)
439 cd01487 E1_ThiF_like E1_ThiF_l 86.6 0.88 1.9E-05 48.0 4.7 32 958-989 1-33 (174)
440 PF01488 Shikimate_DH: Shikima 86.5 0.87 1.9E-05 45.9 4.4 37 698-734 9-45 (135)
441 PRK03803 murD UDP-N-acetylmura 86.0 1.5 3.3E-05 52.9 7.1 106 956-1062 6-132 (448)
442 TIGR02717 AcCoA-syn-alpha acet 86.0 2.7 5.9E-05 51.0 9.1 108 954-1068 5-125 (447)
443 PF10727 Rossmann-like: Rossma 86.0 0.6 1.3E-05 46.9 2.9 37 701-737 10-46 (127)
444 TIGR00036 dapB dihydrodipicoli 85.9 1.6 3.5E-05 49.3 6.7 62 958-1019 3-77 (266)
445 PRK00045 hemA glutamyl-tRNA re 85.8 1.1 2.4E-05 53.9 5.7 36 699-734 180-216 (423)
446 PRK06035 3-hydroxyacyl-CoA deh 85.7 0.87 1.9E-05 51.8 4.5 33 702-734 4-36 (291)
447 PRK12550 shikimate 5-dehydroge 85.4 1.3 2.7E-05 50.3 5.5 64 956-1021 122-189 (272)
448 PRK12861 malic enzyme; Reviewe 85.3 3.4 7.4E-05 53.0 9.8 121 898-1050 157-292 (764)
449 COG5322 Predicted dehydrogenas 85.3 1.7 3.7E-05 48.4 6.2 98 952-1054 163-269 (351)
450 PF04016 DUF364: Domain of unk 85.2 0.97 2.1E-05 46.5 4.1 87 954-1049 9-98 (147)
451 PRK09496 trkA potassium transp 85.2 1.5 3.2E-05 52.9 6.3 90 954-1045 229-330 (453)
452 TIGR01202 bchC 2-desacetyl-2-h 84.9 2.2 4.8E-05 48.8 7.3 85 955-1046 144-231 (308)
453 cd01080 NAD_bind_m-THF_DH_Cycl 84.9 1.7 3.7E-05 45.7 5.8 36 698-733 41-77 (168)
454 PRK07411 hypothetical protein; 84.8 0.83 1.8E-05 54.4 3.9 85 953-1038 35-155 (390)
455 PLN02272 glyceraldehyde-3-phos 84.7 2.5 5.5E-05 50.5 7.8 31 957-987 86-117 (421)
456 PRK09260 3-hydroxybutyryl-CoA 84.7 0.95 2.1E-05 51.4 4.2 32 702-733 2-33 (288)
457 PLN02178 cinnamyl-alcohol dehy 84.6 2.4 5.3E-05 50.1 7.7 87 955-1046 178-273 (375)
458 cd08237 ribitol-5-phosphate_DH 84.5 2.6 5.7E-05 48.9 7.8 90 955-1047 163-257 (341)
459 PRK06129 3-hydroxyacyl-CoA deh 84.4 1 2.3E-05 51.7 4.4 33 702-734 3-35 (308)
460 PRK08300 acetaldehyde dehydrog 84.4 2.5 5.3E-05 48.6 7.2 86 956-1046 4-101 (302)
461 PLN02688 pyrroline-5-carboxyla 84.3 1 2.2E-05 50.4 4.1 32 703-734 2-37 (266)
462 PRK06130 3-hydroxybutyryl-CoA 84.3 1.1 2.4E-05 51.5 4.4 32 702-733 5-36 (311)
463 PLN00203 glutamyl-tRNA reducta 84.2 1.2 2.6E-05 55.0 4.9 73 698-770 263-352 (519)
464 PF02629 CoA_binding: CoA bind 84.2 1.1 2.3E-05 42.5 3.6 65 956-1020 3-72 (96)
465 PRK01710 murD UDP-N-acetylmura 84.2 1.2 2.6E-05 54.1 5.0 36 699-734 12-47 (458)
466 PTZ00325 malate dehydrogenase; 84.2 1.9 4.2E-05 50.0 6.4 100 954-1053 6-132 (321)
467 PF05368 NmrA: NmrA-like famil 84.1 1.6 3.5E-05 47.5 5.5 63 959-1021 1-75 (233)
468 COG0281 SfcA Malic enzyme [Ene 84.0 14 0.0003 44.1 13.1 203 876-1120 135-370 (432)
469 PRK03815 murD UDP-N-acetylmura 84.0 2.1 4.5E-05 51.3 6.8 102 958-1062 2-113 (401)
470 PRK07502 cyclohexadienyl dehyd 83.8 1.2 2.6E-05 51.1 4.6 33 701-733 6-40 (307)
471 TIGR03201 dearomat_had 6-hydro 83.8 1.7 3.7E-05 50.5 5.9 89 955-1048 166-274 (349)
472 TIGR03215 ac_ald_DH_ac acetald 83.6 2.8 6.1E-05 47.8 7.3 65 957-1021 2-75 (285)
473 TIGR01772 MDH_euk_gproteo mala 83.6 2.5 5.5E-05 48.9 7.0 92 958-1049 1-119 (312)
474 PRK14175 bifunctional 5,10-met 83.5 1.7 3.6E-05 49.6 5.4 37 697-733 154-191 (286)
475 PRK05562 precorrin-2 dehydroge 83.4 1.8 3.8E-05 47.7 5.3 90 951-1045 20-115 (223)
476 PRK14874 aspartate-semialdehyd 83.4 1.7 3.8E-05 50.6 5.7 86 956-1047 1-95 (334)
477 COG2085 Predicted dinucleotide 83.3 1.4 3E-05 47.8 4.4 36 702-737 2-37 (211)
478 COG0771 MurD UDP-N-acetylmuram 83.1 1.6 3.5E-05 52.6 5.4 76 699-776 5-98 (448)
479 PRK07231 fabG 3-ketoacyl-(acyl 83.1 2.1 4.5E-05 46.6 5.9 39 953-991 2-41 (251)
480 PF13241 NAD_binding_7: Putati 83.0 1.7 3.6E-05 41.8 4.5 37 698-734 4-40 (103)
481 PRK14805 ornithine carbamoyltr 82.9 16 0.00034 42.2 13.0 65 953-1018 144-222 (302)
482 PRK07530 3-hydroxybutyryl-CoA 82.9 1.4 2.9E-05 50.3 4.5 32 702-733 5-36 (292)
483 TIGR01087 murD UDP-N-acetylmur 82.7 5.5 0.00012 47.9 9.8 107 958-1064 1-128 (433)
484 cd05294 LDH-like_MDH_nadp A la 82.7 5.7 0.00012 45.9 9.5 110 957-1069 1-146 (309)
485 TIGR01761 thiaz-red thiazoliny 82.6 2.8 6.2E-05 49.1 7.0 109 957-1068 4-119 (343)
486 PRK02472 murD UDP-N-acetylmura 82.6 1.7 3.8E-05 52.3 5.5 36 698-733 2-37 (447)
487 TIGR01851 argC_other N-acetyl- 82.5 2.8 6.1E-05 48.3 6.7 76 958-1046 3-80 (310)
488 cd05283 CAD1 Cinnamyl alcohol 82.5 3.2 6.9E-05 47.8 7.4 88 955-1047 169-264 (337)
489 PRK10206 putative oxidoreducta 82.4 2.1 4.7E-05 50.0 6.0 64 958-1021 3-75 (344)
490 PRK06392 homoserine dehydrogen 82.4 3.9 8.4E-05 47.6 8.0 107 958-1065 2-136 (326)
491 COG1063 Tdh Threonine dehydrog 82.4 3.2 6.8E-05 48.7 7.4 89 956-1049 169-272 (350)
492 PRK08507 prephenate dehydrogen 82.2 1.6 3.4E-05 49.3 4.6 31 703-733 2-34 (275)
493 PRK13301 putative L-aspartate 82.2 2.1 4.5E-05 48.2 5.4 75 702-776 3-92 (267)
494 COG0686 Ald Alanine dehydrogen 82.2 1.6 3.4E-05 49.8 4.4 49 313-361 224-275 (371)
495 PRK11199 tyrA bifunctional cho 82.1 2.5 5.4E-05 50.1 6.4 65 653-733 66-131 (374)
496 PLN02383 aspartate semialdehyd 82.1 2.4 5.3E-05 49.7 6.2 86 955-1046 6-100 (344)
497 PRK08328 hypothetical protein; 82.0 2.5 5.4E-05 46.7 6.0 37 953-989 24-61 (231)
498 cd08239 THR_DH_like L-threonin 82.0 2.3 4.9E-05 49.0 5.9 89 955-1048 163-264 (339)
499 PLN00106 malate dehydrogenase 81.9 2.8 6.1E-05 48.7 6.6 116 954-1069 16-164 (323)
500 PRK05808 3-hydroxybutyryl-CoA 81.8 1.5 3.3E-05 49.6 4.3 34 702-735 4-37 (282)
No 1
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=5.8e-63 Score=559.00 Aligned_cols=275 Identities=36% Similarity=0.511 Sum_probs=254.7
Q ss_pred chHHHHHhhccceeEEeecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHH
Q psy13054 844 GLETAKLLKAFKVSKILYTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAV 923 (1128)
Q Consensus 844 ~~e~~~~l~~~~~~~~~~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~ 923 (1128)
.+++.+.+++++++.+..+++++++++.+ |+||||++.|+|+||||+++++++||.|+|+|+.|+.+||||+++++|++
T Consensus 36 ~~~l~~~~~~~d~~~~~~~~v~~~~l~~~-~~Lk~I~~~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~ 114 (324)
T COG0111 36 EEELLEALADADALIVSVTPVTEEVLAAA-PNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLAL 114 (324)
T ss_pred hHHHHhhcccCcEEEEecCCCCHHHHhhC-CCceEEEEccccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHH
Confidence 44567778888866667789999999997 99999999999999999999999999999999999999999999999999
Q ss_pred HhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCC-ccc
Q psy13054 924 SRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGA-QLV 1002 (1128)
Q Consensus 924 ~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~-~~~ 1002 (1128)
.|+++.+++.+++|.|.+. .....+|+||||||||+|+||+++|++|++|||+|++||++.+++.....++ ...
T Consensus 115 ~R~~~~~~~~~~~g~W~~~-----~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~ 189 (324)
T COG0111 115 ARRIPDADASQRRGEWDRK-----AFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVD 189 (324)
T ss_pred hcCchhhHHHHHcCCcccc-----ccccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecc
Confidence 9999999999999999831 1223389999999999999999999999999999999999777654333333 456
Q ss_pred ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCC
Q psy13054 1003 PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADH 1082 (1128)
Q Consensus 1003 ~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~ 1082 (1128)
+|++++++||||++|+|+|++|+||||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+|.+|
T Consensus 190 ~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~ 269 (324)
T COG0111 190 SLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADS 269 (324)
T ss_pred cHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q psy13054 1083 PLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPM 1124 (1128)
Q Consensus 1083 pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l 1124 (1128)
|||++|||++|||+||+|.|+++++++++++|+.+|+.|+++
T Consensus 270 pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~~ 311 (324)
T COG0111 270 PLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPV 311 (324)
T ss_pred hhhcCCCeEECCcccccCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999984
No 2
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=2.1e-61 Score=548.37 Aligned_cols=281 Identities=31% Similarity=0.448 Sum_probs=254.4
Q ss_pred hHHHHHhhccceeEEeecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHH
Q psy13054 845 LETAKLLKAFKVSKILYTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVS 924 (1128)
Q Consensus 845 ~e~~~~l~~~~~~~~~~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~ 924 (1128)
++..+.++++++++....++++++++++ |+||||++.|+|+|+||+++|+++||.|+|+|++++.+||||++++||++.
T Consensus 37 ~~~~~~~~~ad~li~~~~~~~~~~l~~~-p~Lk~I~~~g~G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~ 115 (323)
T PRK15409 37 EQHAAAFAEAEGLLGSGEKVDAALLEKM-PKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTA 115 (323)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHhhC-CCCeEEEECceecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHH
Confidence 3556666777765544467999999997 999999999999999999999999999999999999999999999999999
Q ss_pred hccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHh-hCCCEEEEEeCCCCchhhhhcCCcccC
Q psy13054 925 RRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLK-AFKVSKILYTSRRVKEEGTALGAQLVP 1003 (1128)
Q Consensus 925 R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~-afG~~Vi~~d~~~~~~~~~~~g~~~~~ 1003 (1128)
|++..+++.+++|+|..... ......+|+|||+||||+|+||+++|++++ +|||+|++||++.........++++++
T Consensus 116 R~i~~~~~~~~~g~w~~~~~--~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~ 193 (323)
T PRK15409 116 RRVVEVAERVKAGEWTASIG--PDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCD 193 (323)
T ss_pred cCHHHHHHHHHcCCCcccCc--cccccCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecC
Confidence 99999999999999972110 011234899999999999999999999998 999999988876543333455777889
Q ss_pred hHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCc
Q psy13054 1004 LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHP 1083 (1128)
Q Consensus 1004 l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~p 1083 (1128)
+++++++||+|++|||+|++|+||||++.|++||||++|||+|||++||++||++||++|+|+|||||||++||+|.++|
T Consensus 194 l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~p 273 (323)
T PRK15409 194 LDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSP 273 (323)
T ss_pred HHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q psy13054 1084 LVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128)
Q Consensus 1084 L~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128)
||++|||++|||+||.|.++++++.+.+++||.+|++|+++.|.|
T Consensus 274 L~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~v 318 (323)
T PRK15409 274 LLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDALQGKVEKNCV 318 (323)
T ss_pred hhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccc
Confidence 999999999999999999999999999999999999999887765
No 3
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=8e-61 Score=541.05 Aligned_cols=280 Identities=41% Similarity=0.594 Sum_probs=256.3
Q ss_pred HHHHHhhccceeEEe-ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHH
Q psy13054 846 ETAKLLKAFKVSKIL-YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVS 924 (1128)
Q Consensus 846 e~~~~l~~~~~~~~~-~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~ 924 (1128)
++.+.+++++..... ++++++++++++ |+||+|++.|+|+||||+++|+++||.|+|+|++++++||||++++||++.
T Consensus 37 ~~~~~~~~~~~i~~~~~~~i~~~~l~~~-p~LKlIa~~~~G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~ 115 (324)
T COG1052 37 ELAERLKDADAVITFVNDRIDAEVLEKL-PGLKLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALA 115 (324)
T ss_pred HHHHHhcCCcEEEEcCCCCcCHHHHHhC-CCcEEEEEeccccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHh
Confidence 446677777755554 789999999998 999999999999999999999999999999999999999999999999999
Q ss_pred hccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccC
Q psy13054 925 RRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVP 1003 (1128)
Q Consensus 925 R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~ 1003 (1128)
|++.++++.+++|.|.... ........+++|||+||||+|+||+++|+++++|||+|+.|+++.. ++ .+..++++++
T Consensus 116 R~~~~~~~~~r~g~w~~~~-~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~ 193 (324)
T COG1052 116 RRIHEGDRRVREGNWSLSG-GPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD 193 (324)
T ss_pred hchHHHHHHHhcCcccccC-CcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc
Confidence 9999999999999998321 0111233489999999999999999999999999999998887765 44 4556688889
Q ss_pred hHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCc
Q psy13054 1004 LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHP 1083 (1128)
Q Consensus 1004 l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~p 1083 (1128)
++|++++||+|++|||+|++|+||||++.|++||+|++|||+|||++||++||++||++|+|+|||||||+.||.+.++|
T Consensus 194 l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~ 273 (324)
T COG1052 194 LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHP 273 (324)
T ss_pred HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred cccCCC---eEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q psy13054 1084 LVQLDN---CVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128)
Q Consensus 1084 L~~~pN---vilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128)
|+.++| |++|||+||+|.+++.+|++.+++||.+|++|++..++|
T Consensus 274 l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~~~~~~v 321 (324)
T COG1052 274 LLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVPPNEV 321 (324)
T ss_pred HhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 999888 999999999999999999999999999999999988875
No 4
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=4.8e-60 Score=535.63 Aligned_cols=275 Identities=29% Similarity=0.437 Sum_probs=247.2
Q ss_pred chHHHHHhhccceeEEeecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHH
Q psy13054 844 GLETAKLLKAFKVSKILYTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAV 923 (1128)
Q Consensus 844 ~~e~~~~l~~~~~~~~~~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~ 923 (1128)
.++..+.+++++++....+++++++++++ |+||||++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||++
T Consensus 33 ~~~~~~~~~~~d~ii~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~ 111 (311)
T PRK08410 33 PEEVIERIKDANIIITNKVVIDKEVLSQL-PNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSL 111 (311)
T ss_pred HHHHHHHhCCCCEEEECCCCCCHHHHhhC-CCCeEEEEcccccccccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHH
Confidence 34566667777755544568999999997 99999999999999999999999999999999999999999999999999
Q ss_pred HhccHHHHHHHHcCCCcccccc-ccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCccc
Q psy13054 924 SRRFQEGRKCITSGEWALKQTH-IIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLV 1002 (1128)
Q Consensus 924 ~R~i~~~~~~~~~g~w~~~~~~-~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~ 1002 (1128)
.|++..+++.+++|.|...... .......+|+||||||||+|+||+++|+++++|||+|++||++.... ..+++++
T Consensus 112 ~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~---~~~~~~~ 188 (311)
T PRK08410 112 LGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK---NEEYERV 188 (311)
T ss_pred HhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc---ccCceee
Confidence 9999999999999999731100 00011348999999999999999999999999999999998754321 2356678
Q ss_pred ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCC
Q psy13054 1003 PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADH 1082 (1128)
Q Consensus 1003 ~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~ 1082 (1128)
+|++++++||+|++|||+|++|+||||++.|++||||++|||+|||++||++||++||++|+|+ ||||||++||+|.++
T Consensus 189 ~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~ 267 (311)
T PRK08410 189 SLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNH 267 (311)
T ss_pred cHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ccccC---CCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q psy13054 1083 PLVQL---DNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEP 1123 (1128)
Q Consensus 1083 pL~~~---pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~ 1123 (1128)
|||++ |||++|||+||+|.++.+++.+.+++||.+|++|++
T Consensus 268 pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~~ 311 (311)
T PRK08410 268 PLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGGK 311 (311)
T ss_pred hhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99997 899999999999999999999999999999999874
No 5
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-59 Score=533.39 Aligned_cols=275 Identities=28% Similarity=0.491 Sum_probs=247.6
Q ss_pred chHHHHHhhccceeEEeecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHH
Q psy13054 844 GLETAKLLKAFKVSKILYTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAV 923 (1128)
Q Consensus 844 ~~e~~~~l~~~~~~~~~~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~ 923 (1128)
.++..+.++++++++...+++++++++++ |+||||++.|+|+|++|+++|+++||.|+|+||+++.+||||++++||++
T Consensus 36 ~~~~~~~~~~~d~~i~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~ 114 (317)
T PRK06487 36 PEQVAERLRGAQVAISNKVALDAAALAAA-PQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLAL 114 (317)
T ss_pred HHHHHHHhCCCeEEEEeCCCCCHHHHhhC-CCCeEEEEcCccccccCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHH
Confidence 35667777777755444567999999997 99999999999999999999999999999999999999999999999999
Q ss_pred HhccHHHHHHHHcCCCccccccc-cCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCccc
Q psy13054 924 SRRFQEGRKCITSGEWALKQTHI-IGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLV 1002 (1128)
Q Consensus 924 ~R~i~~~~~~~~~g~w~~~~~~~-~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~ 1002 (1128)
.|++..+++.+++|.|.+..... ......+|+||||||||+|+||+++|+++++|||+|++||++.. . .....+
T Consensus 115 ~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~-~----~~~~~~ 189 (317)
T PRK06487 115 ATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGR-P----ARPDRL 189 (317)
T ss_pred HcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCC-c----cccccc
Confidence 99999999999999997321000 00112489999999999999999999999999999999986532 1 123467
Q ss_pred ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCC
Q psy13054 1003 PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADH 1082 (1128)
Q Consensus 1003 ~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~ 1082 (1128)
+|+|++++||+|++|||+|++|+||||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+|.++
T Consensus 190 ~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~ 269 (317)
T PRK06487 190 PLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGN 269 (317)
T ss_pred CHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc--CCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q psy13054 1083 PLVQ--LDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPM 1124 (1128)
Q Consensus 1083 pL~~--~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l 1124 (1128)
|||. +|||++|||+||+|.++.+++.+.+++||.+|++|+|+
T Consensus 270 pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~ 313 (317)
T PRK06487 270 PLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPL 313 (317)
T ss_pred chhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9995 89999999999999999999999999999999999876
No 6
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=6.2e-60 Score=533.81 Aligned_cols=302 Identities=33% Similarity=0.488 Sum_probs=251.1
Q ss_pred ccchhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHH
Q psy13054 42 LLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDE 121 (1128)
Q Consensus 42 ~l~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~a 121 (1128)
.++++.+.++. ..|++..++......+ ++.+.++++|++++...+++++++++++ |+||+|+++|+||||||+++
T Consensus 10 ~~~~~~~~~l~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~i~~~~l~~~-p~LKlIa~~~~G~D~vDl~a 84 (324)
T COG1052 10 KLPPEVLERLK--EKFEVERYEDDLTPDT--ELAERLKDADAVITFVNDRIDAEVLEKL-PGLKLIATRSAGYDNVDLEA 84 (324)
T ss_pred cCCHHHHHHhh--ccEEEEEeccCCccch--HHHHHhcCCcEEEEcCCCCcCHHHHHhC-CCcEEEEEeccccCcccHHH
Confidence 57777778776 4489888876423333 7889999999999987889999999997 89999999999999999999
Q ss_pred HHhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccc
Q psy13054 122 IKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEI 201 (1128)
Q Consensus 122 a~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~ 201 (1128)
|++|||.|+|+|+|++++||||+|+|||++.||+.++++++|++ +|.. . |....+
T Consensus 85 a~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g-~w~~----------~--------------~~~~~~ 139 (324)
T COG1052 85 AKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREG-NWSL----------S--------------GGPDPL 139 (324)
T ss_pred HHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcC-cccc----------c--------------CCcccc
Confidence 99999999999999999999999999999999999999988774 3421 0 000012
Q ss_pred cccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccc
Q psy13054 202 CQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPK 281 (1128)
Q Consensus 202 ~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~ 281 (1128)
.+....|||+||+|+|. ||++++++++||+|.
T Consensus 140 ~~~~l~gktvGIiG~Gr---------------------------------IG~avA~r~~~Fgm~--------------- 171 (324)
T COG1052 140 LGFDLRGKTLGIIGLGR---------------------------------IGQAVARRLKGFGMK--------------- 171 (324)
T ss_pred cccCCCCCEEEEECCCH---------------------------------HHHHHHHHHhcCCCE---------------
Confidence 23345678999999873 688888888887653
Q ss_pred cccCCccccceeeccccccc-ccccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCc
Q psy13054 282 WRMGSKTDTNHYFGYNWFER-SNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGL 360 (1128)
Q Consensus 282 ~~~g~~~~~~~~~g~~~~~~-~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~l 360 (1128)
++.|+++++ +.+++.+++|++|+||+++|||||+|||||++|+||||++.|++||+|++|||||||++
T Consensus 172 -----------v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~ 240 (324)
T COG1052 172 -----------VLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGL 240 (324)
T ss_pred -----------EEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccc
Confidence 334444432 33556678999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChhhhHHHHHHHHHHHHHHhhhccC
Q psy13054 361 LDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHPLVQLDNCEEFFEELFDKNFQSI 440 (1128)
Q Consensus 361 VDe~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~~~~~~n~~~~~~~~~~~~~~~~ 440 (1128)
|||+||++||++|+|+||||||||+||.+.++||++++|
T Consensus 241 VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~----------------------------------------- 279 (324)
T COG1052 241 VDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDN----------------------------------------- 279 (324)
T ss_pred cCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccC-----------------------------------------
Confidence 999999999999999999999999999766666666655
Q ss_pred CCCCCCCCCCceeEEeccccccccCccchhhhcccccccccc
Q psy13054 441 DPPGAEPGSGQNLATTSKSCILKDKTLPRISASHLLPFKKYS 482 (1128)
Q Consensus 441 ~~~~~~~~~~~nv~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1128)
.|||++|||+||+|+|++.+++..+++|++.|.
T Consensus 280 ---------~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~ 312 (324)
T COG1052 280 ---------FPNVVLTPHIASATEEARKAMAELALENLEAFF 312 (324)
T ss_pred ---------CCCEEEccccccccHHHHHHHHHHHHHHHHHHH
Confidence 256888888888888888888888888887765
No 7
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=6.1e-59 Score=527.02 Aligned_cols=275 Identities=28% Similarity=0.417 Sum_probs=246.5
Q ss_pred chHHHHHhhccceeEEeecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHH
Q psy13054 844 GLETAKLLKAFKVSKILYTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAV 923 (1128)
Q Consensus 844 ~~e~~~~l~~~~~~~~~~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~ 923 (1128)
.++..+.++++++++...+++++++++++ |+||||++.++|+|+||+++|.++||.|+|+||+++.+||||++++||++
T Consensus 35 ~~~~~~~~~~~d~ii~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~ 113 (314)
T PRK06932 35 AEQTIERAKDADIVITSKVLFTRETLAQL-PKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFAL 113 (314)
T ss_pred hHHHHHHhCCCcEEEEeCCCCCHHHHhhC-cCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHH
Confidence 46677777788765555568999999997 99999999999999999999999999999999999999999999999999
Q ss_pred HhccHHHHHHHHcCCCcccc-ccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCccc
Q psy13054 924 SRRFQEGRKCITSGEWALKQ-THIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLV 1002 (1128)
Q Consensus 924 ~R~i~~~~~~~~~g~w~~~~-~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~ 1002 (1128)
.|++..+++.+++|.|.... .........+++||||||||+|+||+++|+++++|||+|++|++..... ....+.
T Consensus 114 ~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~----~~~~~~ 189 (314)
T PRK06932 114 KHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV----CREGYT 189 (314)
T ss_pred HhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccc----cccccC
Confidence 99999999999999997311 0000112248999999999999999999999999999999987543211 122356
Q ss_pred ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCC
Q psy13054 1003 PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADH 1082 (1128)
Q Consensus 1003 ~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~ 1082 (1128)
+|+|++++||||++|||+|++|+||||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+|.++
T Consensus 190 ~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~ 269 (314)
T PRK06932 190 PFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDN 269 (314)
T ss_pred CHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc----cCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q psy13054 1083 PLV----QLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEP 1123 (1128)
Q Consensus 1083 pL~----~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~ 1123 (1128)
||| ++|||++|||+||+|.++++++.+.+++||.+|++|++
T Consensus 270 pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~ 314 (314)
T PRK06932 270 PLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK 314 (314)
T ss_pred hhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999 49999999999999999999999999999999998864
No 8
>KOG0068|consensus
Probab=100.00 E-value=1.2e-59 Score=509.73 Aligned_cols=330 Identities=26% Similarity=0.346 Sum_probs=270.5
Q ss_pred cccEEEEEeeccccccccccccccccchhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHH
Q psy13054 18 HIEKLLLIVQNSHGISSFSRQGSRLLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVL 97 (1128)
Q Consensus 18 ~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL 97 (1128)
.|.++|+.+ .+.++.++.++. ..++++.+.. ++.||+++.++++|++|+++.+++++++|
T Consensus 5 ~~~~il~~e---------------~~~~~~~~~l~~-~g~~v~~~~~----~~~eel~~~i~~~~aviVrs~tkvtadvl 64 (406)
T KOG0068|consen 5 DMRKILVAE---------------SLDQACIEILKD-NGYQVEFKKN----LSLEELIEKIKDCDALIVRSKTKVTADVL 64 (406)
T ss_pred CcceEEEec---------------ccchHHHHHHHh-cCceEEEecc----CCHHHHHHHhccCCEEEEEeCCeecHHHH
Confidence 355677777 566677777762 3347776543 46789999999999999999999999999
Q ss_pred hccCCCceEEEEcCcccccccHHHHHhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccC
Q psy13054 98 DRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALD 177 (1128)
Q Consensus 98 ~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~ 177 (1128)
+.+..+||+|+++|+|+||||+++|+++||.|+|+|.+|+.|+||++++|+++++|++++++..+++
T Consensus 65 ~aa~~~lkvVgrag~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~------------- 131 (406)
T KOG0068|consen 65 EAAAGGLKVVGRAGIGVDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKE------------- 131 (406)
T ss_pred HhhcCCeEEEEecccCccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeec-------------
Confidence 9656799999999999999999999999999999999999999999999999999999998876654
Q ss_pred CCCcccccccccceEeecCccccccccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHh
Q psy13054 178 TKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEIN 257 (1128)
Q Consensus 178 ~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va 257 (1128)
++|.. ..+.|.++.|||+|++|+|+ ||++++
T Consensus 132 g~wnr----------------~~~~G~el~GKTLgvlG~Gr---------------------------------IGseVA 162 (406)
T KOG0068|consen 132 GKWNR----------------VKYLGWELRGKTLGVLGLGR---------------------------------IGSEVA 162 (406)
T ss_pred Cceee----------------cceeeeEEeccEEEEeeccc---------------------------------chHHHH
Confidence 34431 11223345667888887762 567777
Q ss_pred hhccCCceeeeeeCCCCCCCCccccccCCccccceeecccccccc-cccccCCcccCHHHHhhcCCEEEEecCCCccccc
Q psy13054 258 NSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERS-NGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQ 336 (1128)
Q Consensus 258 ~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~-~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~ 336 (1128)
+++++++| ++++||++.+. ..+.+|++.++|+|++++|||||+||||||+|+|
T Consensus 163 ~r~k~~gm--------------------------~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~ 216 (406)
T KOG0068|consen 163 VRAKAMGM--------------------------HVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEK 216 (406)
T ss_pred HHHHhcCc--------------------------eEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhh
Confidence 77766533 55677766544 4678899999999999999999999999999999
Q ss_pred ccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCC
Q psy13054 337 LIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPAD 416 (1128)
Q Consensus 337 lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t 416 (1128)
|+|+++|++||+|+++||+|||++|||+||++||++|+++|||+|||++||+.
T Consensus 217 lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~--------------------------- 269 (406)
T KOG0068|consen 217 LLNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPK--------------------------- 269 (406)
T ss_pred ccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCc---------------------------
Confidence 99999999999999999999999999999999999999999999999999931
Q ss_pred hhhhHHHHHHHHHHHHHHhhhccCCCCCCCCCCCceeEEeccccccccCccchhhhccccccccccCc--------cccc
Q psy13054 417 HPLVQLDNCEEFFEELFDKNFQSIDPPGAEPGSGQNLATTSKSCILKDKTLPRISASHLLPFKKYSGV--------PRLF 488 (1128)
Q Consensus 417 ~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 488 (1128)
++ ...++.++|||+.|||++|+|.||..+|+..+.+++-+|..- |.+-
T Consensus 270 -----------~~-------------~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~~~~g~Vna~~v~ 325 (406)
T KOG0068|consen 270 -----------NG-------------WDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYINGNSAGSVNAPEVA 325 (406)
T ss_pred -----------cc-------------hhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHhccCccceechhhhh
Confidence 01 233778899999999999999999999999999999999764 3333
Q ss_pred ccCCcchhhHHHHHHHHH
Q psy13054 489 ERSTPTQKAFIFHLLYFF 506 (1128)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~ 506 (1128)
-++.+.-|.++--.+|.-
T Consensus 326 ~~~l~~~~~~~~~a~~l~ 343 (406)
T KOG0068|consen 326 LESLTELKPNIVLAEKLG 343 (406)
T ss_pred hhhhhccCchhHHHHHHh
Confidence 444455555555544443
No 9
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=5.9e-58 Score=523.22 Aligned_cols=282 Identities=34% Similarity=0.515 Sum_probs=253.7
Q ss_pred chHHHHHhhccceeEEee-cCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHH
Q psy13054 844 GLETAKLLKAFKVSKILY-TSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIA 922 (1128)
Q Consensus 844 ~~e~~~~l~~~~~~~~~~-~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~ 922 (1128)
.++..+.++++++.++.. +++++++++++ |+||||++.|+|+|+||+++|+++||.|+|+||+|+.+||||++++||+
T Consensus 36 ~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~ 114 (333)
T PRK13243 36 REVLLEKVRDVDALVTMLSERIDCEVFEAA-PRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLA 114 (333)
T ss_pred HHHHHHHhCCCcEEEEeCCCCCCHHHHhhC-CCCeEEEecCccccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHH
Confidence 344566677777554433 57999999997 9999999999999999999999999999999999999999999999999
Q ss_pred HHhccHHHHHHHHcCCCccccccccCC---cccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCC
Q psy13054 923 VSRRFQEGRKCITSGEWALKQTHIIGP---NIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGA 999 (1128)
Q Consensus 923 ~~R~i~~~~~~~~~g~w~~~~~~~~~~---~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~ 999 (1128)
+.|++..+++.+++|.|.+... .+.+ ...+|+||||||||+|+||+.+|++|++|||+|++||++.........++
T Consensus 115 ~~R~~~~~~~~~~~g~W~~~~~-~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~ 193 (333)
T PRK13243 115 TARRLVEADHFVRSGEWKRRGV-AWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGA 193 (333)
T ss_pred HHhCHHHHHHHHHcCCCCcccc-ccccccccccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCC
Confidence 9999999999999999973210 0111 23489999999999999999999999999999999987654333334566
Q ss_pred cccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCC
Q psy13054 1000 QLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLP 1079 (1128)
Q Consensus 1000 ~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~ 1079 (1128)
...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++||++
T Consensus 194 ~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~ 273 (333)
T PRK13243 194 EYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY 273 (333)
T ss_pred EecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCC
Confidence 77799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q psy13054 1080 ADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128)
Q Consensus 1080 ~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128)
++|||++|||++|||+||+|.++.+++.+.+++||.+|++|+++.|.|
T Consensus 274 -~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~v 321 (333)
T PRK13243 274 -NEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRGEVPPTLV 321 (333)
T ss_pred -CchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCCCCCccc
Confidence 899999999999999999999999999999999999999999988865
No 10
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-57 Score=524.80 Aligned_cols=279 Identities=28% Similarity=0.430 Sum_probs=252.6
Q ss_pred chHHHHHhhccceeEEee---cCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHH
Q psy13054 844 GLETAKLLKAFKVSKILY---TSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLA 920 (1128)
Q Consensus 844 ~~e~~~~l~~~~~~~~~~---~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alali 920 (1128)
.++..+.++++++++... .++++++|+++ |+||||++.|+|+||||+++|.++||.|+|++|+|+.+||||++++|
T Consensus 88 ~~~~~~~l~dadili~~~~~~~~~~~e~l~~a-p~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~g~na~sVAE~al~li 166 (386)
T PLN03139 88 DCELEKHIPDLHVLITTPFHPAYVTAERIKKA-KNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRI 166 (386)
T ss_pred HHHHHHHhCCCeEEEEcCccCCCCCHHHHhhC-CCccEEEECCccccccCHHHHHHCCeEEEECCCcCcHHHHHHHHHHH
Confidence 346677777777655432 36999999997 99999999999999999999999999999999999999999999999
Q ss_pred HHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCC
Q psy13054 921 IAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGA 999 (1128)
Q Consensus 921 L~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~ 999 (1128)
|++.|++.++++.+++|.|.... ......+|.||||||||+|+||+++|++|++|||+|++||+.....+ ....++
T Consensus 167 L~l~R~~~~~~~~~~~g~W~~~~---~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~ 243 (386)
T PLN03139 167 LILLRNFLPGYHQVVSGEWNVAG---IAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGA 243 (386)
T ss_pred HHHHcCcHHHHHHHHhCCCcccc---ccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCc
Confidence 99999999999999999997310 11223489999999999999999999999999999999987653333 344566
Q ss_pred ccc-ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCC
Q psy13054 1000 QLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL 1078 (1128)
Q Consensus 1000 ~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl 1078 (1128)
.++ +++|++++||+|++|||++++|+++||++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++||+
T Consensus 244 ~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPl 323 (386)
T PLN03139 244 KFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPA 323 (386)
T ss_pred eecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCC
Confidence 654 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q psy13054 1079 PADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIY 1126 (1128)
Q Consensus 1079 ~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~ 1126 (1128)
|.++|||.+|||++|||+||.|.++++++.+.+++||.+|++|+++..
T Consensus 324 p~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~~~ 371 (386)
T PLN03139 324 PKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFPA 371 (386)
T ss_pred CCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999999999999999999999998654
No 11
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-57 Score=525.78 Aligned_cols=280 Identities=31% Similarity=0.455 Sum_probs=253.4
Q ss_pred chHHHHHhhccceeEEe---ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHH
Q psy13054 844 GLETAKLLKAFKVSKIL---YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLA 920 (1128)
Q Consensus 844 ~~e~~~~l~~~~~~~~~---~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alali 920 (1128)
.++..+.++++++.+.. ..++++++++++ |+||||+++|+|+||+|+++|.++||.|+|++++|+.+||||++++|
T Consensus 81 ~~~~~~~l~dadili~~~~~~~~~~~e~l~~~-p~LK~I~~~g~G~D~id~~aa~~~gI~V~n~~g~~a~~VAE~al~l~ 159 (385)
T PRK07574 81 DSDFEKELPDADVVISQPFWPAYLTAERIAKA-PNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMI 159 (385)
T ss_pred HHHHHHHcCCCeEEEEecCCCCCCCHHHHhhC-CCCcEEEECCcccccccHHHHHHCCcEEEcCCCCchHHHHHHHHHHH
Confidence 34556667777755443 146899999997 99999999999999999999999999999999999999999999999
Q ss_pred HHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCC
Q psy13054 921 IAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGA 999 (1128)
Q Consensus 921 L~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~ 999 (1128)
|++.|++..+++.+++|+|.... ......+|+||||||||+|+||+++|++|++|||+|++||++..... ....++
T Consensus 160 L~l~R~~~~~~~~~~~g~W~~~~---~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~ 236 (385)
T PRK07574 160 LALVRNYEPSHRQAVEGGWNIAD---CVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGL 236 (385)
T ss_pred HHHHcCHHHHHHHHHhCCCCccc---ccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCc
Confidence 99999999999999999997311 01123489999999999999999999999999999999997653333 334566
Q ss_pred cc-cChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCC
Q psy13054 1000 QL-VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL 1078 (1128)
Q Consensus 1000 ~~-~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl 1078 (1128)
+. .+++|++++||+|++|||+|++|+|+||++.|++||+|++|||+|||++||++||++||++|+|+|||||||++||+
T Consensus 237 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPl 316 (385)
T PRK07574 237 TYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPA 316 (385)
T ss_pred eecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCC
Confidence 54 68999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy13054 1079 PADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYE 1127 (1128)
Q Consensus 1079 ~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~ 1127 (1128)
|.+||||++|||++|||+||+|.++++++.+.+++||++|++|+++.|+
T Consensus 317 p~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~~~~ 365 (385)
T PRK07574 317 PADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRDE 365 (385)
T ss_pred CCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 9999999999999999999999999999999999999999999999886
No 12
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=3.7e-57 Score=518.68 Aligned_cols=275 Identities=25% Similarity=0.393 Sum_probs=250.7
Q ss_pred chHHHHHhhccceeEEeecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCC---ChhHHHHHHHHHH
Q psy13054 844 GLETAKLLKAFKVSKILYTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHI---SSDTVAEYNIGLA 920 (1128)
Q Consensus 844 ~~e~~~~l~~~~~~~~~~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~---~a~sVAE~alali 920 (1128)
.++..+.+++++++....+++++++++.+ |+||||++.++|+|++|+++|.++||.|+|+|++ ++.+||||+++++
T Consensus 52 ~~e~~~~~~~~d~~i~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~ 130 (347)
T PLN02928 52 REDVPDVIANYDICVPKMMRLDADIIARA-SQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLM 130 (347)
T ss_pred HHHHHHHhcCCcEEEECCCCCCHHHHhcC-CCceEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHH
Confidence 45677778888866555678999999997 9999999999999999999999999999999986 7899999999999
Q ss_pred HHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhh-----
Q psy13054 921 IAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGT----- 995 (1128)
Q Consensus 921 L~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~----- 995 (1128)
|++.|++..+.+.+++|.|.. +...+++|||+||||+|+||+.+|++|++|||+|++||++.......
T Consensus 131 L~~~R~~~~~~~~~~~~~w~~-------~~~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~ 203 (347)
T PLN02928 131 LGLLRKQNEMQISLKARRLGE-------PIGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIP 203 (347)
T ss_pred HHHHhCHHHHHHHHHcCCccc-------ccccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccc
Confidence 999999999999999999962 23347999999999999999999999999999999998764332211
Q ss_pred --------hcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE
Q psy13054 996 --------ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128)
Q Consensus 996 --------~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128)
.......+|+|++++||+|++|||+|++|+||||++.|++||+|++|||+|||++||++||++||++|+|+|
T Consensus 204 ~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~g 283 (347)
T PLN02928 204 NGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGG 283 (347)
T ss_pred cccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeE
Confidence 011255699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q psy13054 1068 AGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIY 1126 (1128)
Q Consensus 1068 aaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~ 1126 (1128)
|+||||++||+|+++|||++|||++|||+||+|.++++++.+.+++||.+|+.|+++.|
T Consensus 284 AaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~ 342 (347)
T PLN02928 284 LAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMGKIVGDAALQLHAGRPLTG 342 (347)
T ss_pred EEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHHHHHHHHHHHHHCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999998875
No 13
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=4.7e-57 Score=527.86 Aligned_cols=276 Identities=28% Similarity=0.416 Sum_probs=249.9
Q ss_pred chHHHHHhhccceeEEe-ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHH
Q psy13054 844 GLETAKLLKAFKVSKIL-YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIA 922 (1128)
Q Consensus 844 ~~e~~~~l~~~~~~~~~-~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~ 922 (1128)
.++..+.++++++..+. .+++++++++++ |+||||++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||+
T Consensus 44 ~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~ 122 (409)
T PRK11790 44 EEELIEAIKDAHFIGIRSRTQLTEEVLAAA-EKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIIL 122 (409)
T ss_pred HHHHHHHcCCCCEEEEeCCCCCCHHHHhhC-CCCeEEEECceecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHH
Confidence 45666777777765433 358999999997 9999999999999999999999999999999999999999999999999
Q ss_pred HHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcc-
Q psy13054 923 VSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQL- 1001 (1128)
Q Consensus 923 ~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~- 1001 (1128)
+.|++..+++.+++|.|.+. .....+|.|||+||||+|+||+++|+++++|||+|++||++.... ..++..
T Consensus 123 ~~R~~~~~~~~~~~g~w~~~-----~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~---~~~~~~~ 194 (409)
T PRK11790 123 LLRGIPEKNAKAHRGGWNKS-----AAGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP---LGNARQV 194 (409)
T ss_pred HHcChHHHHHHHHcCccccc-----ccCcccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc---cCCceec
Confidence 99999999999999999731 123358999999999999999999999999999999999753221 123444
Q ss_pred cChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCC-
Q psy13054 1002 VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPA- 1080 (1128)
Q Consensus 1002 ~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~- 1080 (1128)
.+++|++++||+|++|||+|++|+|+||++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++||+|.
T Consensus 195 ~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~ 274 (409)
T PRK11790 195 GSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNG 274 (409)
T ss_pred CCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCcc
Confidence 3899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ---CCccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q psy13054 1081 ---DHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128)
Q Consensus 1081 ---~~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128)
++|||++|||++|||+||+|.++++++.+.+++|+.+|+.|+++.+.|
T Consensus 275 ~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~~~~~~~~v 325 (409)
T PRK11790 275 DPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYSDNGSTLSAV 325 (409)
T ss_pred ccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHHcCCCcCcce
Confidence 479999999999999999999999999999999999999999988764
No 14
>KOG0068|consensus
Probab=100.00 E-value=1.7e-57 Score=492.98 Aligned_cols=274 Identities=29% Similarity=0.415 Sum_probs=258.5
Q ss_pred CchHHHHHhhccceeEEe-ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHH
Q psy13054 843 IGLETAKLLKAFKVSKIL-YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAI 921 (1128)
Q Consensus 843 ~~~e~~~~l~~~~~~~~~-~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL 921 (1128)
+-+|+++.+++++..++. .+++++++|+.+..+||+|+++|+|+||+|+++|.++||.|.|+|.+|+.++||+++++++
T Consensus 37 ~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~ 116 (406)
T KOG0068|consen 37 SLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNVDLKAATENGILVVNTPTANSRSAAELTIGLIL 116 (406)
T ss_pred CHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHH
Confidence 445888889998855554 7999999999654899999999999999999999999999999999999999999999999
Q ss_pred HHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcc
Q psy13054 922 AVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQL 1001 (1128)
Q Consensus 922 ~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~ 1001 (1128)
++.|+++++...+++|+|.+. ...+.+++|||+||+|+|+||+.+|++++++||+|+.||+..+.+.....|++.
T Consensus 117 SLaR~i~~A~~s~k~g~wnr~-----~~~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~ 191 (406)
T KOG0068|consen 117 SLARQIGQASASMKEGKWNRV-----KYLGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQL 191 (406)
T ss_pred HHhhhcchhheeeecCceeec-----ceeeeEEeccEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHhcccee
Confidence 999999999999999999842 234448999999999999999999999999999999999999988888899999
Q ss_pred cChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCC-
Q psy13054 1002 VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPA- 1080 (1128)
Q Consensus 1002 ~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~- 1080 (1128)
++++|+++.||||++|||+||+|++|+|.+.|++||+|..+||+|||++||++||++||++|+++|||+|||+.||...
T Consensus 192 vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~ 271 (406)
T KOG0068|consen 192 VSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNG 271 (406)
T ss_pred eeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999655
Q ss_pred -CCccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q psy13054 1081 -DHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKG 1121 (1128)
Q Consensus 1081 -~~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G 1121 (1128)
++.|.++|||++|||+|++|.|++.+++..+++++.+|.+|
T Consensus 272 ~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~ 313 (406)
T KOG0068|consen 272 WDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYING 313 (406)
T ss_pred hhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHhcc
Confidence 88999999999999999999999999999999999999988
No 15
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=3.1e-56 Score=515.11 Aligned_cols=278 Identities=29% Similarity=0.406 Sum_probs=246.5
Q ss_pred chHHHHHh-hccceeEEe-ecCCChhhhhcCCCC--ccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHH
Q psy13054 844 GLETAKLL-KAFKVSKIL-YTSRNKVKTPKRTEN--LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGL 919 (1128)
Q Consensus 844 ~~e~~~~l-~~~~~~~~~-~~~i~~~~l~~~~~~--LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alal 919 (1128)
.+++.+.+ .++++.++. .+++++++++++ |+ ||+|++.|+|+||||+++|+++||.|+|+||+++.+||||++++
T Consensus 52 ~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~-~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~l 130 (386)
T PLN02306 52 VEDIIALIGDKCDGVIGQLTEDWGETLFSAL-SKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASL 130 (386)
T ss_pred HHHHHHHhhcCCcEEEEcCCCCcCHHHHHhC-CcCCceEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHH
Confidence 44566665 457754443 457999999998 74 79999999999999999999999999999999999999999999
Q ss_pred HHHHHhccHHHHHHHHcCCCccccccccCC---cccccCCCeEEEEEcChhhHHHHHHHh-hCCCEEEEEeCCCCchhh-
Q psy13054 920 AIAVSRRFQEGRKCITSGEWALKQTHIIGP---NIMGLKGATVGIVGLGNIGLETAKLLK-AFKVSKILYTSRRVKEEG- 994 (1128)
Q Consensus 920 iL~~~R~i~~~~~~~~~g~w~~~~~~~~~~---~~~~L~gktvGIIG~G~IG~~vA~~l~-afG~~Vi~~d~~~~~~~~- 994 (1128)
||++.|++..+++.+++|.|. .|.+ ...++.||||||||+|+||+++|++++ +|||+|++||++......
T Consensus 131 iLal~R~i~~~~~~~~~g~w~-----~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~ 205 (386)
T PLN02306 131 SLAAARRIVEADEFMRAGLYE-----GWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEK 205 (386)
T ss_pred HHHHHhChHHHHHHHHcCCCc-----cccccccCCcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhh
Confidence 999999999999999999985 2221 234899999999999999999999985 999999999987542211
Q ss_pred --hhcC------------Ccc-cChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHH
Q psy13054 995 --TALG------------AQL-VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEF 1059 (1128)
Q Consensus 995 --~~~g------------~~~-~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~a 1059 (1128)
...+ ++. .+|+|++++||||++|||+|++|+||||++.|++||+|++|||+|||++||++||++|
T Consensus 206 ~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~A 285 (386)
T PLN02306 206 FVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEH 285 (386)
T ss_pred hhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHH
Confidence 1111 222 4899999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q psy13054 1060 LKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128)
Q Consensus 1060 L~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128)
|++|+|+|||||||++||++ ++|||++|||++|||+||+|.++++++.+.+++||.+|++|+++.|.|
T Consensus 286 L~sg~i~gAaLDVf~~EP~~-~~~L~~~pNVilTPHiag~T~e~~~~~~~~~~~ni~~~~~g~~~~~~~ 353 (386)
T PLN02306 286 LKANPMFRVGLDVFEDEPYM-KPGLADMKNAVVVPHIASASKWTREGMATLAALNVLGKLKGYPVWGDP 353 (386)
T ss_pred HHhCCeeEEEEeCCCCCCCC-cchHhhCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCcccc
Confidence 99999999999999999975 579999999999999999999999999999999999999999998875
No 16
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-56 Score=506.13 Aligned_cols=292 Identities=29% Similarity=0.425 Sum_probs=241.5
Q ss_pred ccchhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHH
Q psy13054 42 LLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDE 121 (1128)
Q Consensus 42 ~l~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~a 121 (1128)
.+.++.++.++.. .++..... ...+.+++.+.++++|++++ +.+++++++++.+ ++||+|++.|+|+||||+++
T Consensus 11 ~~~~~~~~~l~~~--~~~~~~~~--~~~~~~~l~~~~~~~d~~~~-~~~~v~~~~l~~~-~~Lk~I~~~g~Gvd~id~~~ 84 (324)
T COG0111 11 PLAPDALEELLAA--YDVEVPDG--PDLDEEELLEALADADALIV-SVTPVTEEVLAAA-PNLKAIGRAGAGVDNIDLEA 84 (324)
T ss_pred ccCHHHHHHHHhc--cccccccc--cccchHHHHhhcccCcEEEE-ecCCCCHHHHhhC-CCceEEEEccccccccCHHH
Confidence 4556666665422 23333221 23456779999999999998 6789999999986 79999999999999999999
Q ss_pred HHhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccc
Q psy13054 122 IKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEI 201 (1128)
Q Consensus 122 a~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~ 201 (1128)
++++||.|+|+|+.|+.+||||++++||+++|+++.++++.++ +.|..+ .+
T Consensus 85 ~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~-------------g~W~~~----------------~~ 135 (324)
T COG0111 85 ATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRR-------------GEWDRK----------------AF 135 (324)
T ss_pred HhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHc-------------CCcccc----------------cc
Confidence 9999999999999999999999999999999999999887754 334320 11
Q ss_pred cccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccc
Q psy13054 202 CQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPK 281 (1128)
Q Consensus 202 ~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~ 281 (1128)
.|.++.|||+||||+|+ ||+++++++++|+|
T Consensus 136 ~g~el~gkTvGIiG~G~---------------------------------IG~~va~~l~afgm---------------- 166 (324)
T COG0111 136 RGTELAGKTVGIIGLGR---------------------------------IGRAVAKRLKAFGM---------------- 166 (324)
T ss_pred ccccccCCEEEEECCCH---------------------------------HHHHHHHHHHhCCC----------------
Confidence 23345679999999974 68889999988764
Q ss_pred cccCCccccceeeccccccccc-ccccCCc-ccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCC
Q psy13054 282 WRMGSKTDTNHYFGYNWFERSN-GTALGAQ-LVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGG 359 (1128)
Q Consensus 282 ~~~g~~~~~~~~~g~~~~~~~~-~~~~g~~-~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~ 359 (1128)
++++||++.... +...++. ..+||+||++|||||+|+|+|++|+||||++.|++||+|++|||+|||+
T Consensus 167 ----------~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~ 236 (324)
T COG0111 167 ----------KVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGG 236 (324)
T ss_pred ----------eEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcc
Confidence 456777654432 3333343 4579999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHHH
Q psy13054 360 LLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEELF 433 (1128)
Q Consensus 360 lVDe~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~~ 433 (1128)
+|||+||++||++|+|+||+||||++||+|.+||||++||| ++|||++++|.+ ..+.+|+..|..+..
T Consensus 237 vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV------~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~ 310 (324)
T COG0111 237 VVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNV------ILTPHIGGSTDEAQERVAEIVAENIVRYLAGGP 310 (324)
T ss_pred eecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCe------EECCcccccCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999 999999999985 344677777666654
No 17
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=5.3e-56 Score=504.18 Aligned_cols=294 Identities=27% Similarity=0.391 Sum_probs=240.4
Q ss_pred cchhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHH
Q psy13054 43 LVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEI 122 (1128)
Q Consensus 43 l~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa 122 (1128)
+.++.++.|. ..+++..++. ....+.+++.+.++++|+++++. .++++++++++ |+||+|+++|+|+||||+++|
T Consensus 11 ~~~~~~~~l~--~~~~v~~~~~-~~~~~~~~~~~~~~~ad~li~~~-~~~~~~~l~~~-p~Lk~I~~~g~G~d~id~~~~ 85 (323)
T PRK15409 11 LPDDLLQRLE--EHFTVTQVAN-LSPETVEQHAAAFAEAEGLLGSG-EKVDAALLEKM-PKLRAASTISVGYDNFDVDAL 85 (323)
T ss_pred CCHHHHHHHH--hcCcEEEcCC-CCCCCHHHHHHHhcCCeEEEEcC-CCCCHHHHhhC-CCCeEEEECceecccccHHHH
Confidence 3445555554 3467765542 12235678999999999999864 58999999986 899999999999999999999
Q ss_pred HhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCcccccc
Q psy13054 123 KSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEIC 202 (1128)
Q Consensus 123 ~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 202 (1128)
+++||.|+|+|++++++||||++++||+++|++..+++.++++ .|.... +..+.
T Consensus 86 ~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g-------------~w~~~~-------------~~~~~ 139 (323)
T PRK15409 86 TARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAG-------------EWTASI-------------GPDWF 139 (323)
T ss_pred HHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcC-------------CCcccC-------------ccccc
Confidence 9999999999999999999999999999999999988877653 232100 00011
Q ss_pred ccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhcc-CCceeeeeeCCCCCCCCccc
Q psy13054 203 QKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLK-GSDIFEFFLGPKKNGSQNPK 281 (1128)
Q Consensus 203 ~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~-g~~~~~~ilG~g~iG~~va~ 281 (1128)
|..+.|||+||+|+|+ ||++++++++ +|+|.
T Consensus 140 g~~L~gktvGIiG~G~---------------------------------IG~~va~~l~~~fgm~--------------- 171 (323)
T PRK15409 140 GTDVHHKTLGIVGMGR---------------------------------IGMALAQRAHFGFNMP--------------- 171 (323)
T ss_pred cCCCCCCEEEEEcccH---------------------------------HHHHHHHHHHhcCCCE---------------
Confidence 2346679999999973 6888888887 77653
Q ss_pred cccCCccccceeecccccccc-cccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCc
Q psy13054 282 WRMGSKTDTNHYFGYNWFERS-NGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGL 360 (1128)
Q Consensus 282 ~~~g~~~~~~~~~g~~~~~~~-~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~l 360 (1128)
+++|+++.+. .....++++++|+||+++|||||+|||+|++|+||||++.|++||||++|||||||++
T Consensus 172 -----------V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~v 240 (323)
T PRK15409 172 -----------ILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPV 240 (323)
T ss_pred -----------EEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccc
Confidence 2334433222 2234577889999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHH
Q psy13054 361 LDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEEL 432 (1128)
Q Consensus 361 VDe~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~ 432 (1128)
|||+||++||++|+|+|||||||++||+|.++|||++||| ++|||+++.|.+ ...++|+.+|+++.
T Consensus 241 Vde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nv------ilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~ 312 (323)
T PRK15409 241 VDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNV------VAVPHIGSATHETRYNMAACAVDNLIDALQGK 312 (323)
T ss_pred cCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCE------EEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999 999999999875 33467777777654
No 18
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=9.9e-56 Score=532.43 Aligned_cols=278 Identities=32% Similarity=0.494 Sum_probs=254.0
Q ss_pred chHHHHHhhccceeEEe-ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHH
Q psy13054 844 GLETAKLLKAFKVSKIL-YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIA 922 (1128)
Q Consensus 844 ~~e~~~~l~~~~~~~~~-~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~ 922 (1128)
.++..+.++++++..+. .+++++++++++ |+||||+++|+|+||+|+++|.++||.|+|+|++|+.+||||++++||+
T Consensus 31 ~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~ 109 (525)
T TIGR01327 31 REELLEIIPDYDALIVRSATKVTEEVIAAA-PKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLA 109 (525)
T ss_pred HHHHHHHhcCCCEEEEcCCCCcCHHHHhhC-CCceEEEECCcccchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHH
Confidence 45666777777765443 357999999997 9999999999999999999999999999999999999999999999999
Q ss_pred HHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCccc
Q psy13054 923 VSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLV 1002 (1128)
Q Consensus 923 ~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~ 1002 (1128)
+.|+++.+++.+++|+|.+. .....+|+||||||||+|+||+++|++|++|||+|++||++.......+.++..+
T Consensus 110 ~~R~~~~~~~~~~~g~W~~~-----~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~ 184 (525)
T TIGR01327 110 AARNIPQADASLKEGEWDRK-----AFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELV 184 (525)
T ss_pred HhcCHHHHHHHHHcCCcccc-----ccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEc
Confidence 99999999999999999731 1223489999999999999999999999999999999998654433455677655
Q ss_pred -ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCC
Q psy13054 1003 -PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPAD 1081 (1128)
Q Consensus 1003 -~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~ 1081 (1128)
+++|++++||+|++|||+|++|+|+||++.|++||+|++|||+|||++||++||++||++|+|+|||||||++||+ .+
T Consensus 185 ~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~-~~ 263 (525)
T TIGR01327 185 DDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPP-TD 263 (525)
T ss_pred CCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCC-CC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999995 58
Q ss_pred CccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q psy13054 1082 HPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128)
Q Consensus 1082 ~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128)
+|||++|||++|||+||+|.++++++++.+++|+.+|++|+++.|.|
T Consensus 264 ~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~v 310 (525)
T TIGR01327 264 NPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAV 310 (525)
T ss_pred ChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCcee
Confidence 99999999999999999999999999999999999999999988765
No 19
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.8e-55 Score=528.62 Aligned_cols=278 Identities=34% Similarity=0.511 Sum_probs=255.4
Q ss_pred chHHHHHhhccceeEEe-ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHH
Q psy13054 844 GLETAKLLKAFKVSKIL-YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIA 922 (1128)
Q Consensus 844 ~~e~~~~l~~~~~~~~~-~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~ 922 (1128)
.++..+.++++++.++. .+++++++++++ |+||||++.|+|+||+|+++|+++||.|+|+|++++.+||||++++||+
T Consensus 33 ~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~ 111 (526)
T PRK13581 33 KEELLEIIGDYDALIVRSATKVTAEVLEAA-KNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLA 111 (526)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCHHHHhhC-CCCeEEEECCcccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHH
Confidence 45666777777765443 358999999997 9999999999999999999999999999999999999999999999999
Q ss_pred HHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCccc
Q psy13054 923 VSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLV 1002 (1128)
Q Consensus 923 ~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~ 1002 (1128)
+.|+++.+++.+++|.|.+. .....+|+||||||||+|+||+.+|++|++|||+|++||++.......+.+++++
T Consensus 112 ~~R~~~~~~~~~~~g~W~~~-----~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~ 186 (526)
T PRK13581 112 LARNIPQAHASLKAGKWERK-----KFMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPERAAQLGVELV 186 (526)
T ss_pred HHcCHHHHHHHHHcCCCCcc-----CccccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEE
Confidence 99999999999999999731 1223489999999999999999999999999999999998654433455677778
Q ss_pred ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCC
Q psy13054 1003 PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADH 1082 (1128)
Q Consensus 1003 ~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~ 1082 (1128)
+++|++++||+|++|||+|++|+++||++.|++||+|++|||+|||++||++||++||++|+|+|||||||++||++ ++
T Consensus 187 ~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~-~~ 265 (526)
T PRK13581 187 SLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPT-DS 265 (526)
T ss_pred cHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCC-Cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999976 89
Q ss_pred ccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q psy13054 1083 PLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128)
Q Consensus 1083 pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128)
|||++|||++|||+||+|.++++++++.+++|+.+|++|+++.|.|
T Consensus 266 pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~v 311 (526)
T PRK13581 266 PLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGPVPNAV 311 (526)
T ss_pred hhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHHHcCCCcCcee
Confidence 9999999999999999999999999999999999999999988865
No 20
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=6.1e-55 Score=494.03 Aligned_cols=287 Identities=25% Similarity=0.397 Sum_probs=233.1
Q ss_pred hhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHHHhC
Q psy13054 46 ESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSR 125 (1128)
Q Consensus 46 ~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~er 125 (1128)
+.++.++ +.+++..++. .+.+++.+.++++|+++++ ..++++++|+++ |+||+|+++|+|+||||+++|+++
T Consensus 14 ~~~~~l~--~~~~~~~~~~----~~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~ 85 (311)
T PRK08410 14 KDLSVFE--EFGDFQIYPT----TSPEEVIERIKDANIIITN-KVVIDKEVLSQL-PNLKLICITATGTNNVDIEYAKKK 85 (311)
T ss_pred hhHHHHh--hCceEEEeCC----CCHHHHHHHhCCCCEEEEC-CCCCCHHHHhhC-CCCeEEEEcccccccccHHHHHhC
Confidence 3344443 3356665542 2467899999999999986 468999999986 799999999999999999999999
Q ss_pred CcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccc
Q psy13054 126 GIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKY 205 (1128)
Q Consensus 126 GI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 205 (1128)
||.|+|+||+++++||||+++|||+++|++..+++.++++ .| ..... .. ..++ .+..
T Consensus 86 gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g-~w------------~~~~~-~~-----~~~~----~~~~ 142 (311)
T PRK08410 86 GIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSG-EY------------SESPI-FT-----HISR----PLGE 142 (311)
T ss_pred CCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcC-CC------------CcCCC-cc-----ccCc----cccc
Confidence 9999999999999999999999999999999988877653 23 21000 00 0000 1234
Q ss_pred cccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccC
Q psy13054 206 STHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMG 285 (1128)
Q Consensus 206 ~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g 285 (1128)
+.|||+||+|+|+ ||+++++++++|+|.
T Consensus 143 L~gktvGIiG~G~---------------------------------IG~~vA~~~~~fgm~------------------- 170 (311)
T PRK08410 143 IKGKKWGIIGLGT---------------------------------IGKRVAKIAQAFGAK------------------- 170 (311)
T ss_pred cCCCEEEEECCCH---------------------------------HHHHHHHHHhhcCCE-------------------
Confidence 5678999999973 688889998887653
Q ss_pred CccccceeecccccccccccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHH
Q psy13054 286 SKTDTNHYFGYNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365 (1128)
Q Consensus 286 ~~~~~~~~~g~~~~~~~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~A 365 (1128)
+++|+++.+. ...++++++|+||+++|||||+|||+|++|+||||++.|++||||++|||+|||++|||+|
T Consensus 171 -------V~~~d~~~~~--~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~A 241 (311)
T PRK08410 171 -------VVYYSTSGKN--KNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKD 241 (311)
T ss_pred -------EEEECCCccc--cccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHH
Confidence 3445543221 1235678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeeEEEEecCCCCCCCCCCCcccC---CCCCCCCcccccccCCCCChh------hhHHHHHHHHHHH
Q psy13054 366 LVEFLKDKKIGGAGLDVMIPEPLPADHPLVQL---DNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEE 431 (1128)
Q Consensus 366 L~~AL~sG~IagAaLDVfe~EPl~~~~pL~~l---pNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~ 431 (1128)
|++||++|+|+ ||||||++||++.+||||.+ ||| ++|||+++.|.+ ...++|+.+|+++
T Consensus 242 L~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~Nv------ilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g 309 (311)
T PRK08410 242 LAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKL------LITPHIAWASKEARKTLIEKVKENIKDFLEG 309 (311)
T ss_pred HHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCE------EECCccccCCHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999 99999999999999999997 899 999999999875 3456777776653
No 21
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=2e-53 Score=484.78 Aligned_cols=280 Identities=22% Similarity=0.316 Sum_probs=251.2
Q ss_pred CCCchHHHHHhhccceeEEe-ecCCChhhhhcCCC--CccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHH
Q psy13054 841 GNIGLETAKLLKAFKVSKIL-YTSRNKVKTPKRTE--NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNI 917 (1128)
Q Consensus 841 ~~~~~e~~~~l~~~~~~~~~-~~~i~~~~l~~~~~--~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~al 917 (1128)
..+.++..+.+++++++++. .+++++++++++ | +||+|++.++|+|+||+++|+++||.|+|+|++++++||||++
T Consensus 33 ~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~-~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~ 111 (330)
T PRK12480 33 ELLSSATVDQLKDYDGVTTMQFGKLENDVYPKL-ESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSV 111 (330)
T ss_pred CCCCHHHHHHhCCCCEEEEecCCCCCHHHHHhh-hhcCceEEEecccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHH
Confidence 34577788899999976654 468999999997 6 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhc
Q psy13054 918 GLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTAL 997 (1128)
Q Consensus 918 aliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~ 997 (1128)
+++|++.|++..+++.+++|.|... . .....+|+|++|||||+|.||+.+|++|++|||+|++||++......
T Consensus 112 ~l~L~~~R~~~~~~~~~~~~~~~w~---~-~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~--- 184 (330)
T PRK12480 112 SIALQLVRRFPDIERRVQAHDFTWQ---A-EIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLD--- 184 (330)
T ss_pred HHHHHHHHhHHHHHHHHHhCCcccc---c-ccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhh---
Confidence 9999999999999999999977410 0 11234899999999999999999999999999999999976543221
Q ss_pred CCcc-cChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCC
Q psy13054 998 GAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPE 1076 (1128)
Q Consensus 998 g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~E 1076 (1128)
..++ .++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||.+||++||+++|++|+|+|||||||++|
T Consensus 185 ~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~E 264 (330)
T PRK12480 185 FLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENE 264 (330)
T ss_pred hhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCC
Confidence 1233 389999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-------------CCCccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q psy13054 1077 PLP-------------ADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128)
Q Consensus 1077 Pl~-------------~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128)
|++ ..+|||++|||++|||+||+|.++++++.+.+++|+.+|++|++..++|
T Consensus 265 P~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~~~~~~~~~~~~~ 329 (330)
T PRK12480 265 AAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSVINTGTCETRL 329 (330)
T ss_pred CccccccccccccCchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHHhCCCCcccC
Confidence 962 1247999999999999999999999999999999999999999998875
No 22
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.7e-53 Score=481.78 Aligned_cols=268 Identities=25% Similarity=0.398 Sum_probs=222.9
Q ss_pred CHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecCCCCchhHHHHHHHHHH
Q psy13054 70 PRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAI 149 (1128)
Q Consensus 70 ~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~~~~aVAE~alalmL 149 (1128)
+.+++.+.++++|+++.+ ..++++++++++ |+||+|+++|+|+||||+++|+++||.|+|+||+++++||||++++||
T Consensus 35 ~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L 112 (317)
T PRK06487 35 TPEQVAERLRGAQVAISN-KVALDAAALAAA-PQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLL 112 (317)
T ss_pred CHHHHHHHhCCCeEEEEe-CCCCCHHHHhhC-CCCeEEEEcCccccccCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHH
Confidence 468899999999998875 468999999986 899999999999999999999999999999999999999999999999
Q ss_pred HHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeeccccccCCCCCccc
Q psy13054 150 AVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKW 229 (1128)
Q Consensus 150 ~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w 229 (1128)
+++|++..+++.++++ .|..... .. .....+..+.|||+||+|+|+
T Consensus 113 ~~~R~~~~~~~~~~~g-------------~W~~~~~-~~---------~~~~~~~~l~gktvgIiG~G~----------- 158 (317)
T PRK06487 113 ALATRLPDYQQAVAAG-------------RWQQSSQ-FC---------LLDFPIVELEGKTLGLLGHGE----------- 158 (317)
T ss_pred HHHcCHHHHHHHHHcC-------------CCccCcc-cc---------cccCcccccCCCEEEEECCCH-----------
Confidence 9999999988776653 2321000 00 000112345678999999973
Q ss_pred ccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeecccccccccccccCC
Q psy13054 230 RMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSNGTALGA 309 (1128)
Q Consensus 230 ~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~~~~~g~ 309 (1128)
||+++++++++|+|. +++|+++.+. ..+
T Consensus 159 ----------------------IG~~vA~~l~~fgm~--------------------------V~~~~~~~~~----~~~ 186 (317)
T PRK06487 159 ----------------------LGGAVARLAEAFGMR--------------------------VLIGQLPGRP----ARP 186 (317)
T ss_pred ----------------------HHHHHHHHHhhCCCE--------------------------EEEECCCCCc----ccc
Confidence 688899999887653 3334432211 124
Q ss_pred cccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCCCC
Q psy13054 310 QLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLP 389 (1128)
Q Consensus 310 ~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EPl~ 389 (1128)
++++|+|++++|||||+|||||++|+||||++.|++||+|++|||+|||++|||+||++||++|+|+||+||||++||++
T Consensus 187 ~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~ 266 (317)
T PRK06487 187 DRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPV 266 (317)
T ss_pred cccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCC
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccc--CCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHH
Q psy13054 390 ADHPLVQ--LDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEE 431 (1128)
Q Consensus 390 ~~~pL~~--lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~ 431 (1128)
.+||||. +||| ++|||++++|.+ ....+|+.+|+++
T Consensus 267 ~~~pl~~~~~pnv------ilTPHia~~t~e~~~~~~~~~~~ni~~~~~g 310 (317)
T PRK06487 267 NGNPLLAPDIPRL------IVTPHSAWGSREARQRIVGQLAENARAFFAG 310 (317)
T ss_pred CCCchhhcCCCCE------EECCccccCCHHHHHHHHHHHHHHHHHHHcC
Confidence 9999995 8999 999999999875 3345666666654
No 23
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=5.1e-53 Score=478.67 Aligned_cols=268 Identities=26% Similarity=0.357 Sum_probs=221.4
Q ss_pred CHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecCCCCchhHHHHHHHHHH
Q psy13054 70 PRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAI 149 (1128)
Q Consensus 70 ~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~~~~aVAE~alalmL 149 (1128)
+.+++.+.++++|++++. ..++++++++++ |+||+|+++|+|+||||+++|+++||.|+|+||+++++||||++++||
T Consensus 34 ~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l 111 (314)
T PRK06932 34 SAEQTIERAKDADIVITS-KVLFTRETLAQL-PKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIF 111 (314)
T ss_pred ChHHHHHHhCCCcEEEEe-CCCCCHHHHhhC-cCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHH
Confidence 578899999999998874 568999999986 899999999999999999999999999999999999999999999999
Q ss_pred HHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeeccccccCCCCCccc
Q psy13054 150 AVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKW 229 (1128)
Q Consensus 150 ~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w 229 (1128)
++.|+++..++.++++ .|..... +. .....+..+.|||+||+|+|+
T Consensus 112 ~~~R~~~~~~~~~~~~-------------~W~~~~~-~~---------~~~~~~~~l~gktvgIiG~G~----------- 157 (314)
T PRK06932 112 ALKHSLMGWYRDQLSD-------------RWATCKQ-FC---------YFDYPITDVRGSTLGVFGKGC----------- 157 (314)
T ss_pred HHHhChHHHHHHHHcC-------------CCCcCcc-cc---------ccCCcccccCCCEEEEECCCH-----------
Confidence 9999999888766542 2321000 00 000112235678999999973
Q ss_pred ccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeecccccccccccccCC
Q psy13054 230 RMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSNGTALGA 309 (1128)
Q Consensus 230 ~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~~~~~g~ 309 (1128)
||+++++++++|+|. +++|++... .....
T Consensus 158 ----------------------IG~~va~~l~~fg~~--------------------------V~~~~~~~~---~~~~~ 186 (314)
T PRK06932 158 ----------------------LGTEVGRLAQALGMK--------------------------VLYAEHKGA---SVCRE 186 (314)
T ss_pred ----------------------HHHHHHHHHhcCCCE--------------------------EEEECCCcc---ccccc
Confidence 688899998888664 223332211 11122
Q ss_pred cccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCCCC
Q psy13054 310 QLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLP 389 (1128)
Q Consensus 310 ~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EPl~ 389 (1128)
.+++|+|+|++|||||+|||||++|+||||++.|++||||++|||+|||++|||+||++||++|+|+||+||||++||++
T Consensus 187 ~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~ 266 (314)
T PRK06932 187 GYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPE 266 (314)
T ss_pred ccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcc----cCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHH
Q psy13054 390 ADHPLV----QLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFE 430 (1128)
Q Consensus 390 ~~~pL~----~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~ 430 (1128)
.++||| ++||| ++|||++++|.+ ...++|+.+|++
T Consensus 267 ~~~pl~~~~~~~pnv------ilTPHia~~t~e~~~~~~~~~~~ni~~~~~ 311 (314)
T PRK06932 267 KDNPLIQAAKRLPNL------LITPHIAWASDSAVTTLVNKVAQNIEEFVQ 311 (314)
T ss_pred CCChhhHhhcCCCCE------EECCccccCcHHHHHHHHHHHHHHHHHHHh
Confidence 999998 59999 999999999875 334667777664
No 24
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=8.7e-53 Score=492.01 Aligned_cols=288 Identities=25% Similarity=0.345 Sum_probs=234.0
Q ss_pred chhhhhhhhccCCc-eEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHH
Q psy13054 44 VPESLSKLRFNSRF-DIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEI 122 (1128)
Q Consensus 44 ~~~~l~~l~~~~~~-~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa 122 (1128)
.++.++.++. ..+ ++..++. ..+.+++.+.++++|+++++..+++++++|+++ |+||+|+++|+|+||||+++|
T Consensus 20 ~~~~~~~l~~-~~~~~v~~~~~---~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~ 94 (409)
T PRK11790 20 HQSAVEVLRA-AGYTNIEYHKG---ALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAA-EKLVAIGCFCIGTNQVDLDAA 94 (409)
T ss_pred CHHHHHHHHh-cCCceEEECCC---CCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhC-CCCeEEEECceecccccHHHH
Confidence 3444555531 235 6665542 246788999999999998876678999999986 899999999999999999999
Q ss_pred HhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCcccccc
Q psy13054 123 KSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEIC 202 (1128)
Q Consensus 123 ~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 202 (1128)
+++||.|+|+||+++++||||++++||+++|++..++++++++ .|... ...
T Consensus 95 ~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g-------------~w~~~----------------~~~ 145 (409)
T PRK11790 95 AKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRG-------------GWNKS----------------AAG 145 (409)
T ss_pred HhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcC-------------ccccc----------------ccC
Confidence 9999999999999999999999999999999999988877653 33210 011
Q ss_pred ccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCcccc
Q psy13054 203 QKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKW 282 (1128)
Q Consensus 203 ~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~ 282 (1128)
+.++.|||+||+|+|+ ||+++++++++|++.
T Consensus 146 ~~~L~gktvGIiG~G~---------------------------------IG~~vA~~~~~fGm~---------------- 176 (409)
T PRK11790 146 SFEVRGKTLGIVGYGH---------------------------------IGTQLSVLAESLGMR---------------- 176 (409)
T ss_pred cccCCCCEEEEECCCH---------------------------------HHHHHHHHHHHCCCE----------------
Confidence 2345678999999973 688889998887654
Q ss_pred ccCCccccceeecccccccccccccCCccc-CHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCcc
Q psy13054 283 RMGSKTDTNHYFGYNWFERSNGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLL 361 (1128)
Q Consensus 283 ~~g~~~~~~~~~g~~~~~~~~~~~~g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lV 361 (1128)
+++|+++... ...+++++ +|+||+++|||||+|||+|++|+||||++.|++||+|++|||+|||++|
T Consensus 177 ----------V~~~d~~~~~--~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~v 244 (409)
T PRK11790 177 ----------VYFYDIEDKL--PLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVV 244 (409)
T ss_pred ----------EEEECCCccc--ccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCccc
Confidence 3444432211 11134444 9999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCeeEEEEecCCCCCCCC----CCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHH
Q psy13054 362 DQEALVEFLKDKKIGGAGLDVMIPEPLPA----DHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEE 431 (1128)
Q Consensus 362 De~AL~~AL~sG~IagAaLDVfe~EPl~~----~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~ 431 (1128)
||+||++||++|+|+|||||||++||++. ++|||++||| ++|||++++|.+ ....+|+..|+++
T Consensus 245 de~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nv------ilTPHia~~t~ea~~~~~~~~~~nl~~~~~~ 318 (409)
T PRK11790 245 DIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNV------ILTPHIGGSTQEAQENIGLEVAGKLVKYSDN 318 (409)
T ss_pred CHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCE------EECCcCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999876 4799999999 999999999874 3345666666654
Q ss_pred H
Q psy13054 432 L 432 (1128)
Q Consensus 432 ~ 432 (1128)
.
T Consensus 319 ~ 319 (409)
T PRK11790 319 G 319 (409)
T ss_pred C
Confidence 3
No 25
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=1.3e-52 Score=474.40 Aligned_cols=253 Identities=22% Similarity=0.291 Sum_probs=225.8
Q ss_pred ChhhhhcCCCCccEEEEccccCCcCChhh-----hhhCCcEEEEcCC-CChhHHHHHHHHHHHHHHhccHHHHHHHHcCC
Q psy13054 865 NKVKTPKRTENLKVITTFSVGYDHLELHE-----IKARGIRVGSVGH-ISSDTVAEYNIGLAIAVSRRFQEGRKCITSGE 938 (1128)
Q Consensus 865 ~~~~l~~~~~~LK~I~~~~aGvd~idl~a-----~~~~GI~V~n~p~-~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~ 938 (1128)
+.+.++ . ++||||++.|+|+|++|.+. +.++||.|+|+++ .++.+||||+++++|++.|+++.+.+.+++|.
T Consensus 48 ~~~~l~-~-~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~ 125 (312)
T PRK15469 48 PVEMLA-G-RDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSH 125 (312)
T ss_pred ChHHhc-c-CCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCC
Confidence 556675 4 89999999999999998332 4458999999864 68999999999999999999999999999999
Q ss_pred CccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEec
Q psy13054 939 WALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTC 1018 (1128)
Q Consensus 939 w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~l 1018 (1128)
|.. ....+++||||||||+|+||+++|++|++|||+|++||++..............++++++++||+|++|+
T Consensus 126 w~~-------~~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~l 198 (312)
T PRK15469 126 WQP-------LPEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLL 198 (312)
T ss_pred cCC-------CCCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECC
Confidence 972 1234789999999999999999999999999999999875543221111123458999999999999999
Q ss_pred CCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCC
Q psy13054 1019 ALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSS 1098 (1128)
Q Consensus 1019 Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag 1098 (1128)
|+|++|+++||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+|.++|||++|||++|||+||
T Consensus 199 Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag 278 (312)
T PRK15469 199 PNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAA 278 (312)
T ss_pred CCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q psy13054 1099 ATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128)
Q Consensus 1099 ~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128)
.|.+. ++.+.+.+|+++|++|+++.|+|
T Consensus 279 ~t~~~--~~~~~~~~n~~~~~~g~~~~~~V 306 (312)
T PRK15469 279 VTRPA--EAVEYISRTIAQLEKGERVCGQV 306 (312)
T ss_pred CcCHH--HHHHHHHHHHHHHHcCCCCcccC
Confidence 99874 68999999999999999999876
No 26
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=4.4e-52 Score=474.98 Aligned_cols=277 Identities=21% Similarity=0.328 Sum_probs=250.0
Q ss_pred CchHHHHHhhccceeEEe-ecCCChhhhhcCCCC--ccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHH
Q psy13054 843 IGLETAKLLKAFKVSKIL-YTSRNKVKTPKRTEN--LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGL 919 (1128)
Q Consensus 843 ~~~e~~~~l~~~~~~~~~-~~~i~~~~l~~~~~~--LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alal 919 (1128)
..+|..+.+++++.+++. .+++++++|+++ |+ ||+|++.|+|+|++|+++|+++||.|+|+|++++.+||||++++
T Consensus 35 ~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~ 113 (332)
T PRK08605 35 LTDDNVEEVEGFDGLSLSQQIPLSEAIYKLL-NELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQ 113 (332)
T ss_pred CCHHHHHHhcCCCEEEEecCCCCCHHHHHhh-hhcCceEEEEcccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHH
Confidence 456777788888865553 578999999997 76 99999999999999999999999999999999999999999999
Q ss_pred HHHHHhccHHHHHHHHcCCCccccccccCC--cccccCCCeEEEEEcChhhHHHHHHH-hhCCCEEEEEeCCCCchhhhh
Q psy13054 920 AIAVSRRFQEGRKCITSGEWALKQTHIIGP--NIMGLKGATVGIVGLGNIGLETAKLL-KAFKVSKILYTSRRVKEEGTA 996 (1128)
Q Consensus 920 iL~~~R~i~~~~~~~~~g~w~~~~~~~~~~--~~~~L~gktvGIIG~G~IG~~vA~~l-~afG~~Vi~~d~~~~~~~~~~ 996 (1128)
+|++.|++..+++.+++|.|. |.. ...+|+|++|||||+|.||+++|++| ++|||+|++||++..... .
T Consensus 114 ~l~~~R~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~--~ 185 (332)
T PRK08605 114 AINLVRHFNQIQTKVREHDFR------WEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA--A 185 (332)
T ss_pred HHHHhcChHHHHHHHHhCCcc------cccccccceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH--H
Confidence 999999999999999999885 222 23489999999999999999999999 899999999987654332 1
Q ss_pred cCCccc-ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCC
Q psy13054 997 LGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIP 1075 (1128)
Q Consensus 997 ~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~ 1075 (1128)
..+... ++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||.++|+++|+++|++|+|+||+||||+.
T Consensus 186 ~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~ 265 (332)
T PRK08605 186 TYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEF 265 (332)
T ss_pred hhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccC
Confidence 234444 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC--CCCCC-----------ccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q psy13054 1076 EP--LPADH-----------PLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128)
Q Consensus 1076 EP--l~~~~-----------pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128)
|| +|.++ |||++|||++|||+||+|.++++++...+++|+.+|++|++..|+|
T Consensus 266 Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n~~~~~~g~~~~~~~ 331 (332)
T PRK08605 266 ERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDALDATLEVLQTGTTRLRV 331 (332)
T ss_pred CCCccccccccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHHcCCCCCCCc
Confidence 98 56665 4999999999999999999999999999999999999999998875
No 27
>KOG0069|consensus
Probab=100.00 E-value=1.3e-52 Score=468.28 Aligned_cols=263 Identities=44% Similarity=0.679 Sum_probs=240.3
Q ss_pred ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCc
Q psy13054 861 YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWA 940 (1128)
Q Consensus 861 ~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~ 940 (1128)
....+.+.+.+..|+||+|+++|+|+||||+++|++|||+|+|+|+.++++|||++++++|.+.|++...++.+++|+|.
T Consensus 70 ~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w~ 149 (336)
T KOG0069|consen 70 TGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGWG 149 (336)
T ss_pred chHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCcc
Confidence 34567788877669999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred cccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCc-hh-hhhcCCcccChHhhhccCCEEEEec
Q psy13054 941 LKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK-EE-GTALGAQLVPLDTLCAESDFIFVTC 1018 (1128)
Q Consensus 941 ~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~-~~-~~~~g~~~~~l~ell~~sDvV~l~l 1018 (1128)
. . ...+....+.||||||+|+|+||+.+|++|++|||. +.|+.+... .+ ..+.+.+.+++++++++||+||+||
T Consensus 150 ~--~-~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~-i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~ 225 (336)
T KOG0069|consen 150 W--A-GGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCV-ILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNC 225 (336)
T ss_pred c--c-CCccccccccCCEEEEecCcHHHHHHHHhhhhccce-eeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEec
Confidence 1 1 111234489999999999999999999999999965 566666544 33 5556777889999999999999999
Q ss_pred CCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCC
Q psy13054 1019 ALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSS 1098 (1128)
Q Consensus 1019 Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag 1098 (1128)
|+|++|+|+||+++|++||+|+++||+|||+++|++++++||++|+|++|+||||++|| +.++||++++||++|||+|+
T Consensus 226 pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP-~~~~~l~~~dnvv~~PHigs 304 (336)
T KOG0069|consen 226 PLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP-PVDHPLLTLDNVVILPHIGS 304 (336)
T ss_pred CCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC-CCCcchhcccceeEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999 88999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q psy13054 1099 ATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128)
Q Consensus 1099 ~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128)
.|.+++++|+..++.|+.++++|+|+..+|
T Consensus 305 ~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~ 334 (336)
T KOG0069|consen 305 ATLETREKMAEIVLNNLLAFFSGKPLLTPV 334 (336)
T ss_pred CcHHHHHHHHHHHHHHHHHHHccCCCCCcC
Confidence 999999999999999999999999987764
No 28
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=3.7e-52 Score=475.54 Aligned_cols=296 Identities=28% Similarity=0.465 Sum_probs=237.1
Q ss_pred hhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHHHh
Q psy13054 45 PESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKS 124 (1128)
Q Consensus 45 ~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~e 124 (1128)
++.++.++ ..+++..++. ....+.+++.+.++++|+++++..+++++++++++ |+||+|+++|+|+||||+++|++
T Consensus 13 ~~~~~~l~--~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-p~Lk~I~~~~~G~d~id~~~~~~ 88 (333)
T PRK13243 13 ENGIEMLE--EHFEVEVWED-EREIPREVLLEKVRDVDALVTMLSERIDCEVFEAA-PRLRIVANYAVGYDNIDVEEATR 88 (333)
T ss_pred HHHHHHHh--cCceEEEecC-CCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhC-CCCeEEEecCccccccCHHHHHH
Confidence 34445554 3356655532 12346788999999999999876568999999986 89999999999999999999999
Q ss_pred CCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCcccccccc
Q psy13054 125 RGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQK 204 (1128)
Q Consensus 125 rGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 204 (1128)
+||.|+|+||+++++||||++++||+++|+++.+++.++++ .| ......+. .....|.
T Consensus 89 ~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g-~W------------~~~~~~~~---------~~~~~g~ 146 (333)
T PRK13243 89 RGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSG-EW------------KRRGVAWH---------PLMFLGY 146 (333)
T ss_pred cCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcC-CC------------Cccccccc---------ccccccc
Confidence 99999999999999999999999999999999988877653 33 21000000 0001123
Q ss_pred ccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCcccccc
Q psy13054 205 YSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRM 284 (1128)
Q Consensus 205 ~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~ 284 (1128)
++.||++||||+|. ||+.+++++++|++.
T Consensus 147 ~L~gktvgIiG~G~---------------------------------IG~~vA~~l~~~G~~------------------ 175 (333)
T PRK13243 147 DVYGKTIGIIGFGR---------------------------------IGQAVARRAKGFGMR------------------ 175 (333)
T ss_pred CCCCCEEEEECcCH---------------------------------HHHHHHHHHHHCCCE------------------
Confidence 45678999999973 678888888877653
Q ss_pred CCccccceeeccccccccc-ccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCH
Q psy13054 285 GSKTDTNHYFGYNWFERSN-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQ 363 (1128)
Q Consensus 285 g~~~~~~~~~g~~~~~~~~-~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe 363 (1128)
+++|+++.+.. ....++++.+++|++++||+|++|+|+|++|+|+||++.|++||+|++|||+|||++|||
T Consensus 176 --------V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~ 247 (333)
T PRK13243 176 --------ILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDT 247 (333)
T ss_pred --------EEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCH
Confidence 23344332221 224466778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHH
Q psy13054 364 EALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEEL 432 (1128)
Q Consensus 364 ~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~ 432 (1128)
+||++||++|+|+||+||||++||++ ++|||++||| ++|||+++.|.+ ...++|+.+|+.+.
T Consensus 248 ~aL~~aL~~g~i~gAaLDV~~~EP~~-~~pL~~~~nv------ilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~ 315 (333)
T PRK13243 248 KALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKNV------VLAPHIGSATFEAREGMAELVAENLIAFKRGE 315 (333)
T ss_pred HHHHHHHHcCCeEEEEeccCCCCCCC-CchhhcCCCE------EECCcCCcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999987 8999999999 999999999875 33467777776654
No 29
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=8.2e-52 Score=478.35 Aligned_cols=301 Identities=20% Similarity=0.273 Sum_probs=228.6
Q ss_pred CceEEEcCCCCCCCCHHHHHHhc-CCceEEEeCCCCCCCHHHHhccCC-CceEEEEcCcccccccHHHHHhCCcEEEecC
Q psy13054 56 RFDIDTYPVSEGRMPRDIFIEKL-KGCSALLCNPHQKVDKEVLDRSGE-NLKVIATFSVGHDHLHLDEIKSRGIRVGTVG 133 (1128)
Q Consensus 56 ~~~v~~~~~~~~~~~~eel~~~l-~~adaIi~~~~~~i~~evL~~~~~-~LK~I~~~gvG~DnIDl~aa~erGI~V~n~p 133 (1128)
.+++..+...+...+.+++.+.+ .++|+++++..++++++++++++. +||+|+++|+|+||||+++|+++||.|+|+|
T Consensus 37 ~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V~n~p 116 (386)
T PLN02306 37 DCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTP 116 (386)
T ss_pred CceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceEEEECCcccccccHHHHHHCCCEEEECC
Confidence 36776544222235778898988 579999987667899999998732 4799999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeee
Q psy13054 134 PVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLL 213 (1128)
Q Consensus 134 g~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~gi 213 (1128)
|+++++||||++++||+++|++..+++.++++ .| ..|... ...|..+.|||+||
T Consensus 117 g~~~~~VAE~al~liLal~R~i~~~~~~~~~g-~w---------~~~~~~----------------~~~g~~L~gktvGI 170 (386)
T PLN02306 117 GVLTETTAELAASLSLAAARRIVEADEFMRAG-LY---------EGWLPH----------------LFVGNLLKGQTVGV 170 (386)
T ss_pred CcCHHHHHHHHHHHHHHHHhChHHHHHHHHcC-CC---------cccccc----------------ccCCcCCCCCEEEE
Confidence 99999999999999999999999988877653 23 112110 01123456789999
Q ss_pred eeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhcc-CCceeeeeeCCCCCCCC-ccccccCCccccc
Q psy13054 214 ISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLK-GSDIFEFFLGPKKNGSQ-NPKWRMGSKTDTN 291 (1128)
Q Consensus 214 iGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~-g~~~~~~ilG~g~iG~~-va~~~~g~~~~~~ 291 (1128)
+|+|+ ||+++++++. +|+|.+..+++ .... .... .
T Consensus 171 iG~G~---------------------------------IG~~vA~~l~~~fGm~V~~~d~--~~~~~~~~~--------~ 207 (386)
T PLN02306 171 IGAGR---------------------------------IGSAYARMMVEGFKMNLIYYDL--YQSTRLEKF--------V 207 (386)
T ss_pred ECCCH---------------------------------HHHHHHHHHHhcCCCEEEEECC--CCchhhhhh--------h
Confidence 99973 6888888874 77664322221 1100 0000 0
Q ss_pred eeecccccccccccccCCcc-cCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHH
Q psy13054 292 HYFGYNWFERSNGTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFL 370 (1128)
Q Consensus 292 ~~~g~~~~~~~~~~~~g~~~-vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL 370 (1128)
..++.+... ......++++ .+|+|+|++|||||+|||+|++|+||||++.|++||+|++|||+|||++|||+||++||
T Consensus 208 ~~~~~~l~~-~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL 286 (386)
T PLN02306 208 TAYGQFLKA-NGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHL 286 (386)
T ss_pred hhhcccccc-cccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHH
Confidence 000000000 0000112233 49999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHHH
Q psy13054 371 KDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEELF 433 (1128)
Q Consensus 371 ~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~~ 433 (1128)
++|+|+|||||||++||++ ++|||++||| ++|||++++|.+ ...++|+.+|+++..
T Consensus 287 ~sg~i~gAaLDVf~~EP~~-~~~L~~~pNV------ilTPHiag~T~e~~~~~~~~~~~ni~~~~~g~~ 348 (386)
T PLN02306 287 KANPMFRVGLDVFEDEPYM-KPGLADMKNA------VVVPHIASASKWTREGMATLAALNVLGKLKGYP 348 (386)
T ss_pred HhCCeeEEEEeCCCCCCCC-cchHhhCCCE------EECCccccCcHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999964 6799999999 999999999874 345677777776543
No 30
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=4.6e-52 Score=478.88 Aligned_cols=281 Identities=20% Similarity=0.279 Sum_probs=231.4
Q ss_pred CceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCC--CCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecC
Q psy13054 56 RFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPH--QKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVG 133 (1128)
Q Consensus 56 ~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~--~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~p 133 (1128)
.++++.+++. ..+.+++.+.++++|++|+... .++++++|+++ |+||+|+++|+|+||||+++|+++||.|+|+|
T Consensus 75 g~~~v~~~~~--~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~a-p~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~ 151 (386)
T PLN03139 75 GHQYIVTDDK--EGPDCELEKHIPDLHVLITTPFHPAYVTAERIKKA-KNLELLLTAGIGSDHIDLPAAAAAGLTVAEVT 151 (386)
T ss_pred CCeEEEeCCC--CCCHHHHHHHhCCCeEEEEcCccCCCCCHHHHhhC-CCccEEEECCccccccCHHHHHHCCeEEEECC
Confidence 3677666532 3467889999999999998542 46999999986 89999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeee
Q psy13054 134 PVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLL 213 (1128)
Q Consensus 134 g~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~gi 213 (1128)
|+|+++||||++++||++.|++..++++++++ .|..... ...+..+.||++||
T Consensus 152 g~na~sVAE~al~liL~l~R~~~~~~~~~~~g-------------~W~~~~~--------------~~~~~~L~gktVGI 204 (386)
T PLN03139 152 GSNVVSVAEDELMRILILLRNFLPGYHQVVSG-------------EWNVAGI--------------AYRAYDLEGKTVGT 204 (386)
T ss_pred CcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhC-------------CCccccc--------------cCCCcCCCCCEEEE
Confidence 99999999999999999999999988877653 2321000 00123356789999
Q ss_pred eeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCcccccee
Q psy13054 214 ISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHY 293 (1128)
Q Consensus 214 iGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~ 293 (1128)
+|+|. ||+.+++++++|++. +
T Consensus 205 VG~G~---------------------------------IG~~vA~~L~afG~~--------------------------V 225 (386)
T PLN03139 205 VGAGR---------------------------------IGRLLLQRLKPFNCN--------------------------L 225 (386)
T ss_pred EeecH---------------------------------HHHHHHHHHHHCCCE--------------------------E
Confidence 99873 678888888877653 2
Q ss_pred ecccccc--cccccccCCccc-CHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHH
Q psy13054 294 FGYNWFE--RSNGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFL 370 (1128)
Q Consensus 294 ~g~~~~~--~~~~~~~g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL 370 (1128)
++|+++. .+...+.+++++ +|+|++++||+|++|||+|++|+||||++.|++||+|++|||+|||++|||+||++||
T Consensus 226 ~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL 305 (386)
T PLN03139 226 LYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADAC 305 (386)
T ss_pred EEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHH
Confidence 3344332 112234566665 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChhh------hHHHHHHHHHHH
Q psy13054 371 KDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHPL------VQLDNCEEFFEE 431 (1128)
Q Consensus 371 ~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~~------~~~~n~~~~~~~ 431 (1128)
++|+|+||+||||++||+|.+||||++||| ++|||+++.|.+. .+.+|+..|+.+
T Consensus 306 ~sG~l~GAaLDV~~~EPlp~d~pL~~~pNv------ilTPHiag~t~~~~~r~~~~~~~nl~~~~~G 366 (386)
T PLN03139 306 SSGHIGGYGGDVWYPQPAPKDHPWRYMPNH------AMTPHISGTTIDAQLRYAAGVKDMLDRYFKG 366 (386)
T ss_pred HcCCceEEEEcCCCCCCCCCCChhhcCCCe------EEcccccccCHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999 9999999998753 245666666553
No 31
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=6.4e-51 Score=458.18 Aligned_cols=240 Identities=25% Similarity=0.389 Sum_probs=218.9
Q ss_pred CCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccc
Q psy13054 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG 953 (1128)
Q Consensus 874 ~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~ 953 (1128)
++||||++.++|+|++|+++|+++||.++|. |.++.+||||+++++|++.|++.++++.+++|.|.. ....+
T Consensus 48 ~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~-------~~~~~ 119 (303)
T PRK06436 48 KKTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQ-------SPTKL 119 (303)
T ss_pred CCeEEEEECCcccCcccHHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCC-------CCCCC
Confidence 8999999999999999999999998888775 889999999999999999999999999999999972 12358
Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHH
Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQF 1033 (1128)
Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l 1033 (1128)
|+||||||||+|+||+++|+++++|||+|++||++...... .....++++++++||+|++|||+|++|+++|+++.|
T Consensus 120 L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~---~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l 196 (303)
T PRK06436 120 LYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVNDGI---SSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKML 196 (303)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcccCc---ccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHH
Confidence 99999999999999999999999999999999976432211 112468999999999999999999999999999999
Q ss_pred ccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCC-CCcHHHHHHHHHHHH
Q psy13054 1034 SLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTS-SATKAVRDEKSSTSA 1112 (1128)
Q Consensus 1034 ~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHia-g~t~e~~~~~~~~~~ 1112 (1128)
++||+|++|||+|||++||++||+++|++|++.||+||||++||+|.++ .+|||++|||++ +.|.++++++.+.++
T Consensus 197 ~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~---~~~nviiTPHi~g~~t~e~~~~~~~~~~ 273 (303)
T PRK06436 197 SLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET---NPDNVILSPHVAGGMSGEIMQPAVALAF 273 (303)
T ss_pred hcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC---CCCCEEECCccccccCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998776 689999999976 589999999999999
Q ss_pred HHHHHHHcCCCCCCCC
Q psy13054 1113 ENIIRGYKGEPMIYEL 1128 (1128)
Q Consensus 1113 ~nl~~~l~G~~l~~~v 1128 (1128)
+||.+|++|++ .|.|
T Consensus 274 ~ni~~~~~g~~-~~~V 288 (303)
T PRK06436 274 ENIKNFFEGKP-KNIV 288 (303)
T ss_pred HHHHHHHcCCC-CceE
Confidence 99999999987 5654
No 32
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-51 Score=473.13 Aligned_cols=284 Identities=23% Similarity=0.300 Sum_probs=232.8
Q ss_pred CceEEEcCCCCCCCCHHHHHHhcCCceEEEeCC--CCCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecC
Q psy13054 56 RFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNP--HQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVG 133 (1128)
Q Consensus 56 ~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~--~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~p 133 (1128)
.+++..+.+ ...+.+++.+.++++|++|+.. ..++++++|+++ |+||+|+++|+|+||||+++|+++||.|+|+|
T Consensus 68 g~e~~~~~~--~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~~-p~LK~I~~~g~G~D~id~~aa~~~gI~V~n~~ 144 (385)
T PRK07574 68 GHELVVTSD--KDGPDSDFEKELPDADVVISQPFWPAYLTAERIAKA-PNLKLAITAGIGSDHVDLQAASEHGITVAEVT 144 (385)
T ss_pred CcEEEEeCC--CCCCHHHHHHHcCCCeEEEEecCCCCCCCHHHHhhC-CCCcEEEECCcccccccHHHHHHCCcEEEcCC
Confidence 367766543 2346788999999999999853 357999999986 89999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeee
Q psy13054 134 PVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLL 213 (1128)
Q Consensus 134 g~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~gi 213 (1128)
++++++||||++++||+++|++..++++++++ .|..... ...+..+.||++||
T Consensus 145 g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g-------------~W~~~~~--------------~~~~~~L~gktVGI 197 (385)
T PRK07574 145 GSNSISVAEHVVMMILALVRNYEPSHRQAVEG-------------GWNIADC--------------VSRSYDLEGMTVGI 197 (385)
T ss_pred CCchHHHHHHHHHHHHHHHcCHHHHHHHHHhC-------------CCCcccc--------------cccceecCCCEEEE
Confidence 99999999999999999999999988876653 2321000 00112355788999
Q ss_pred eeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCcccccee
Q psy13054 214 ISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHY 293 (1128)
Q Consensus 214 iGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~ 293 (1128)
+|+|+ ||+.+++++++|++. +
T Consensus 198 vG~G~---------------------------------IG~~vA~~l~~fG~~--------------------------V 218 (385)
T PRK07574 198 VGAGR---------------------------------IGLAVLRRLKPFDVK--------------------------L 218 (385)
T ss_pred ECCCH---------------------------------HHHHHHHHHHhCCCE--------------------------E
Confidence 98873 678888888887654 2
Q ss_pred eccccccc--ccccccCCc-ccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHH
Q psy13054 294 FGYNWFER--SNGTALGAQ-LVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFL 370 (1128)
Q Consensus 294 ~g~~~~~~--~~~~~~g~~-~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL 370 (1128)
++|+++.. +.....+++ +.+++|++++||+|++|||+|++|+||||++.|++||+|++|||+|||++||++||++||
T Consensus 219 ~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL 298 (385)
T PRK07574 219 HYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRAL 298 (385)
T ss_pred EEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHH
Confidence 34443321 112344565 469999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChhh------hHHHHHHHHHHHHHH
Q psy13054 371 KDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHPL------VQLDNCEEFFEELFD 434 (1128)
Q Consensus 371 ~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~~------~~~~n~~~~~~~~~~ 434 (1128)
++|+|+|||||||++||+|.+||||++||| ++|||+++.|.+. .+.+|+..|+++...
T Consensus 299 ~sG~i~GAaLDV~~~EPlp~d~pL~~~pNv------ilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~ 362 (385)
T PRK07574 299 ESGHLAGYAGDVWFPQPAPADHPWRTMPRN------GMTPHISGTTLSAQARYAAGTREILECFFEGRPI 362 (385)
T ss_pred HhCCccEEEEecCCCCCCCCCChHHhCCCe------EECCccccCcHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999 9999999998753 345777777665433
No 33
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=2e-50 Score=463.08 Aligned_cols=279 Identities=19% Similarity=0.316 Sum_probs=222.8
Q ss_pred CHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecCCC---CchhHHHHHHH
Q psy13054 70 PRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPV---SSDTVAEYNIG 146 (1128)
Q Consensus 70 ~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~---~~~aVAE~ala 146 (1128)
+.+++.+.++++|+++++ ..++++++|+.+ |+||+|+++|+|+||||+++|.++||.|+|+|++ ++.+||||+++
T Consensus 51 ~~~e~~~~~~~~d~~i~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~ 128 (347)
T PLN02928 51 AREDVPDVIANYDICVPK-MMRLDADIIARA-SQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIY 128 (347)
T ss_pred CHHHHHHHhcCCcEEEEC-CCCCCHHHHhcC-CCceEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHH
Confidence 567889999999998875 468999999985 8999999999999999999999999999999986 78999999999
Q ss_pred HHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeeccccccCCCCC
Q psy13054 147 LAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQN 226 (1128)
Q Consensus 147 lmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~ 226 (1128)
+||+++|++...++.++++ .|... .+..+.||++||+|+|.
T Consensus 129 l~L~~~R~~~~~~~~~~~~-------------~w~~~------------------~~~~l~gktvGIiG~G~-------- 169 (347)
T PLN02928 129 LMLGLLRKQNEMQISLKAR-------------RLGEP------------------IGDTLFGKTVFILGYGA-------- 169 (347)
T ss_pred HHHHHHhCHHHHHHHHHcC-------------Ccccc------------------cccCCCCCEEEEECCCH--------
Confidence 9999999999887766542 23210 11235678999999973
Q ss_pred cccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeecccccc-ccccc
Q psy13054 227 PKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFE-RSNGT 305 (1128)
Q Consensus 227 ~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~-~~~~~ 305 (1128)
||+++++++++|++.+. ++.+..+.... ..+++.... .....
T Consensus 170 -------------------------IG~~vA~~l~afG~~V~--~~dr~~~~~~~----------~~~~~~~~~~~~~~~ 212 (347)
T PLN02928 170 -------------------------IGIELAKRLRPFGVKLL--ATRRSWTSEPE----------DGLLIPNGDVDDLVD 212 (347)
T ss_pred -------------------------HHHHHHHHHhhCCCEEE--EECCCCChhhh----------hhhcccccccccccc
Confidence 68889999998877532 22211110000 000000000 00000
Q ss_pred ccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCC
Q psy13054 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIP 385 (1128)
Q Consensus 306 ~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~ 385 (1128)
. ...+.+|+|++++||||++|||+|++|+||||++.|++||||++|||+|||++|||+||++||++|+|+||+||||++
T Consensus 213 ~-~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~ 291 (347)
T PLN02928 213 E-KGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWS 291 (347)
T ss_pred c-cCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCC
Confidence 1 125679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHHH
Q psy13054 386 EPLPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEELF 433 (1128)
Q Consensus 386 EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~~ 433 (1128)
||+++++|||++||| ++|||++++|.+ ....+|+.+|+++..
T Consensus 292 EP~~~~~pL~~~~nv------iiTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~ 339 (347)
T PLN02928 292 EPFDPDDPILKHPNV------IITPHVAGVTEYSYRSMGKIVGDAALQLHAGRP 339 (347)
T ss_pred CCCCCCChhhcCCCE------EECCcCCCChHHHHHHHHHHHHHHHHHHHCCCC
Confidence 999999999999999 999999999875 334677777766543
No 34
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=5.2e-50 Score=482.87 Aligned_cols=288 Identities=27% Similarity=0.404 Sum_probs=235.7
Q ss_pred cchhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHH
Q psy13054 43 LVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEI 122 (1128)
Q Consensus 43 l~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa 122 (1128)
+.++.++.++. ..+++...+ ..+.+++.+.++++|++++++.+++++++|+++ |+||+|+++|+|+||||+++|
T Consensus 8 ~~~~~~~~l~~-~~~~~~~~~----~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~ 81 (525)
T TIGR01327 8 ISPDGIDILED-VGVEVDVQT----GLSREELLEIIPDYDALIVRSATKVTEEVIAAA-PKLKVIGRAGVGVDNIDIEAA 81 (525)
T ss_pred CCHHHHHHHHh-cCcEEEeCC----CCCHHHHHHHhcCCCEEEEcCCCCcCHHHHhhC-CCceEEEECCcccchhcHHHH
Confidence 33455555531 235666543 235788999999999999887778999999986 899999999999999999999
Q ss_pred HhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCcccccc
Q psy13054 123 KSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEIC 202 (1128)
Q Consensus 123 ~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 202 (1128)
+++||.|+|+|++++.+||||++++||+++|+++.+++.++++ .|... .+.
T Consensus 82 ~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g-------------~W~~~----------------~~~ 132 (525)
T TIGR01327 82 TARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEG-------------EWDRK----------------AFM 132 (525)
T ss_pred HHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcC-------------Ccccc----------------ccC
Confidence 9999999999999999999999999999999999988876653 33210 011
Q ss_pred ccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCcccc
Q psy13054 203 QKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKW 282 (1128)
Q Consensus 203 ~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~ 282 (1128)
|..+.||++||+|+|. ||+.+++++++|++.
T Consensus 133 g~~l~gktvgIiG~G~---------------------------------IG~~vA~~l~~fG~~---------------- 163 (525)
T TIGR01327 133 GTELYGKTLGVIGLGR---------------------------------IGSIVAKRAKAFGMK---------------- 163 (525)
T ss_pred ccccCCCEEEEECCCH---------------------------------HHHHHHHHHHhCCCE----------------
Confidence 2345678999999973 678889988887653
Q ss_pred ccCCccccceeecccccc-cccccccCCccc-CHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCc
Q psy13054 283 RMGSKTDTNHYFGYNWFE-RSNGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGL 360 (1128)
Q Consensus 283 ~~g~~~~~~~~~g~~~~~-~~~~~~~g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~l 360 (1128)
+++|+++. ++...+++++++ +|+|++++||+|++|||+|++|+||||++.|++||+|++|||+|||++
T Consensus 164 ----------V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~ 233 (525)
T TIGR01327 164 ----------VLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGI 233 (525)
T ss_pred ----------EEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCce
Confidence 34445432 222344567766 899999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChhh------hHHHHHHHHHHH
Q psy13054 361 LDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHPL------VQLDNCEEFFEE 431 (1128)
Q Consensus 361 VDe~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~~------~~~~n~~~~~~~ 431 (1128)
|||+||++||++|+|+|||||||++||+ .++|||++||| ++|||++++|.+. ..++|+.+|+++
T Consensus 234 vde~aL~~aL~~g~i~gAaLDVf~~EP~-~~~pL~~~~nv------i~TPHia~~t~e~~~~~~~~~~~ni~~~~~g 303 (525)
T TIGR01327 234 IDEAALYEALEEGHVRAAALDVFEKEPP-TDNPLFDLDNV------IATPHLGASTREAQENVATQVAEQVLDALKG 303 (525)
T ss_pred eCHHHHHHHHHcCCeeEEEEecCCCCCC-CCChhhcCCCe------EECCCccccHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999994 58999999999 9999999998752 334566665554
No 35
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=2.4e-49 Score=454.77 Aligned_cols=242 Identities=26% Similarity=0.343 Sum_probs=216.0
Q ss_pred hhccceeEEe-ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHH
Q psy13054 851 LKAFKVSKIL-YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQE 929 (1128)
Q Consensus 851 l~~~~~~~~~-~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~ 929 (1128)
+++++++.+. .+++++++++ . ++||||+++++|+||||+++++++||.|+|+||+|+.+||||+++++|++.|+.
T Consensus 35 l~daD~liv~s~t~v~~~ll~-~-~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~-- 110 (378)
T PRK15438 35 LADADALMVRSVTKVNESLLA-G-KPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD-- 110 (378)
T ss_pred hCCCcEEEEcCCCCCCHHHhc-C-CCCeEEEECcccccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC--
Confidence 4555544433 3678999986 4 899999999999999999999999999999999999999999999999999851
Q ss_pred HHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhc
Q psy13054 930 GRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCA 1009 (1128)
Q Consensus 930 ~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~ 1009 (1128)
.| ++.||||||||+|+||+++|++|++|||+|++||+..... .....+++|+++++
T Consensus 111 --------g~-------------~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~---~~~~~~~~L~ell~ 166 (378)
T PRK15438 111 --------GF-------------SLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR---GDEGDFRSLDELVQ 166 (378)
T ss_pred --------CC-------------CcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc---ccccccCCHHHHHh
Confidence 12 4899999999999999999999999999999998643321 11234679999999
Q ss_pred cCCEEEEecCCCcc----cccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccc
Q psy13054 1010 ESDFIFVTCALTKD----TEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLV 1085 (1128)
Q Consensus 1010 ~sDvV~l~lPlt~~----T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~ 1085 (1128)
+||||++|+|+|++ |+||||++.|++||+|++|||+|||++||++||+++|++|++.||+||||++||. .++|||
T Consensus 167 ~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~-~~~~Ll 245 (378)
T PRK15438 167 EADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPE-LNVELL 245 (378)
T ss_pred hCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCC-Cchhhh
Confidence 99999999999996 9999999999999999999999999999999999999999999999999999996 467898
Q ss_pred cCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q psy13054 1086 QLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEP 1123 (1128)
Q Consensus 1086 ~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~ 1123 (1128)
..+| ++|||+||+|.+...++..++.+|+.+|+ |.+
T Consensus 246 ~~~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~-~~~ 281 (378)
T PRK15438 246 KKVD-IGTPHIAGYTLEGKARGTTQVFEAYSKFI-GHE 281 (378)
T ss_pred hcCC-EECCccCcCcHHHHHHHHHHHHHHHHHHH-cCc
Confidence 8766 99999999999999999999999999998 444
No 36
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-49 Score=478.93 Aligned_cols=289 Identities=30% Similarity=0.428 Sum_probs=236.2
Q ss_pred cchhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHH
Q psy13054 43 LVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEI 122 (1128)
Q Consensus 43 l~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa 122 (1128)
+.++.++.++....+++...+. .+.+++.+.++++|++++++.+++++++++++ |+||+|+++|+|+||||+++|
T Consensus 9 ~~~~~~~~l~~~~~~~v~~~~~----~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~ 83 (526)
T PRK13581 9 ISPAGLEILKDAPGVEVDVKTG----LDKEELLEIIGDYDALIVRSATKVTAEVLEAA-KNLKVIGRAGVGVDNVDVPAA 83 (526)
T ss_pred CCHHHHHHHhccCCeEEEeCCC----CCHHHHHHHhcCCCEEEEcCCCCCCHHHHhhC-CCCeEEEECCcccccccHHHH
Confidence 3345555554211356654332 35788999999999999877678999999986 899999999999999999999
Q ss_pred HhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCcccccc
Q psy13054 123 KSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEIC 202 (1128)
Q Consensus 123 ~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 202 (1128)
+++||.|+|+|++++.+||||++++||+++|+++.+++.++++ .|... .+.
T Consensus 84 ~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g-------------~W~~~----------------~~~ 134 (526)
T PRK13581 84 TRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAG-------------KWERK----------------KFM 134 (526)
T ss_pred HHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcC-------------CCCcc----------------Ccc
Confidence 9999999999999999999999999999999999988766543 33210 011
Q ss_pred ccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCcccc
Q psy13054 203 QKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKW 282 (1128)
Q Consensus 203 ~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~ 282 (1128)
+..+.+|++||+|+|. ||+.+++++++|++.
T Consensus 135 g~~l~gktvgIiG~G~---------------------------------IG~~vA~~l~~fG~~---------------- 165 (526)
T PRK13581 135 GVELYGKTLGIIGLGR---------------------------------IGSEVAKRAKAFGMK---------------- 165 (526)
T ss_pred ccccCCCEEEEECCCH---------------------------------HHHHHHHHHHhCCCE----------------
Confidence 2335678999999973 678888888877653
Q ss_pred ccCCccccceeeccccccc-ccccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCcc
Q psy13054 283 RMGSKTDTNHYFGYNWFER-SNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLL 361 (1128)
Q Consensus 283 ~~g~~~~~~~~~g~~~~~~-~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lV 361 (1128)
+++|+++.. +.....++++++++|++++||+|++|||+|++|+||||++.|++||+|++|||+|||++|
T Consensus 166 ----------V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~v 235 (526)
T PRK13581 166 ----------VIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGII 235 (526)
T ss_pred ----------EEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCcee
Confidence 344554322 223456778889999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChhh------hHHHHHHHHHHH
Q psy13054 362 DQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHPL------VQLDNCEEFFEE 431 (1128)
Q Consensus 362 De~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~~------~~~~n~~~~~~~ 431 (1128)
||+||++||++|+|+|||||||++||++ +||||++||| ++|||++++|.+. ..++|+.+|+++
T Consensus 236 de~aL~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~nv------ilTPHia~~t~e~~~~~~~~~~~ni~~~~~g 304 (526)
T PRK13581 236 DEAALAEALKSGKVAGAALDVFEKEPPT-DSPLFELPNV------VVTPHLGASTAEAQENVAIQVAEQVIDALRG 304 (526)
T ss_pred CHHHHHHHHhcCCeeEEEEecCCCCCCC-CchhhcCCCe------eEcCccccchHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999976 9999999999 9999999998752 345666665554
No 37
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=7.3e-49 Score=452.19 Aligned_cols=244 Identities=24% Similarity=0.343 Sum_probs=218.5
Q ss_pred HhhccceeEEe-ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccH
Q psy13054 850 LLKAFKVSKIL-YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQ 928 (1128)
Q Consensus 850 ~l~~~~~~~~~-~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~ 928 (1128)
.+++++++.+. .+++++++++ . ++||||+++++|+||+|+++++++||.|+|+||+|+.+||||+++++|++.|+
T Consensus 34 ~l~daD~liv~~~t~v~~~ll~-~-~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~-- 109 (381)
T PRK00257 34 AVRDADVLLVRSVTRVDRALLE-G-SRVRFVGTCTIGTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER-- 109 (381)
T ss_pred HhCCceEEEEeCCCCCCHHHhc-C-CCCeEEEECCccccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc--
Confidence 34455544333 3679999997 3 89999999999999999999999999999999999999999999999999874
Q ss_pred HHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhh
Q psy13054 929 EGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLC 1008 (1128)
Q Consensus 929 ~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell 1008 (1128)
+. .++.||||||||+|+||+++|+++++|||+|++||+..... +.+...++++|++
T Consensus 110 ----------~g-----------~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~---~~~~~~~~l~ell 165 (381)
T PRK00257 110 ----------EG-----------VDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA---EGDGDFVSLERIL 165 (381)
T ss_pred ----------cC-----------CCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc---ccCccccCHHHHH
Confidence 11 25899999999999999999999999999999998754321 1234567999999
Q ss_pred ccCCEEEEecCCCc----ccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCcc
Q psy13054 1009 AESDFIFVTCALTK----DTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPL 1084 (1128)
Q Consensus 1009 ~~sDvV~l~lPlt~----~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL 1084 (1128)
++||+|++|+|+|+ +|+||||++.|++||+|++|||+|||++||++||+++|++|++.+|+||||++||. .++||
T Consensus 166 ~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L 244 (381)
T PRK00257 166 EECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQ-IDLEL 244 (381)
T ss_pred hhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCC-CChhh
Confidence 99999999999999 59999999999999999999999999999999999999999999999999999996 47899
Q ss_pred ccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q psy13054 1085 VQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEP 1123 (1128)
Q Consensus 1085 ~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~ 1123 (1128)
|.. |+++|||+||+|.+...++.+++++|+.+|+.+.+
T Consensus 245 ~~~-nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~~ 282 (381)
T PRK00257 245 ADL-CTIATPHIAGYSLDGKARGTAQIYQALCRFFGIPA 282 (381)
T ss_pred hhC-CEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 985 99999999999999999999999999999998765
No 38
>KOG0069|consensus
Probab=100.00 E-value=6.7e-49 Score=438.62 Aligned_cols=273 Identities=34% Similarity=0.513 Sum_probs=226.9
Q ss_pred CCHHHHHHhcCCceEEEeCC-CCCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecCCCCchhHHHHHHHH
Q psy13054 69 MPRDIFIEKLKGCSALLCNP-HQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGL 147 (1128)
Q Consensus 69 ~~~eel~~~l~~adaIi~~~-~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~~~~aVAE~alal 147 (1128)
.+.+++.+.+.++..++... ....+.+.+.+++|+||+|+++|+|+||||+++|++|||+|+|+|+.++++|||+++++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~l 128 (336)
T KOG0069|consen 49 LIKTDFLKRIADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSL 128 (336)
T ss_pred cchhhhhhhccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHH
Confidence 45566777777766555443 44688999998889999999999999999999999999999999999999999999999
Q ss_pred HHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeeccccccCCCCCc
Q psy13054 148 AIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNP 227 (1128)
Q Consensus 148 mL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~ 227 (1128)
+|.++||+..++++++.+ .| .|. +....|....+|++||+|+|.
T Consensus 129 il~~~R~~~~g~~~~~~g-~w----------~~~----------------~~~~~g~~~~gK~vgilG~G~--------- 172 (336)
T KOG0069|consen 129 LLALLRRFSEGNEMVRNG-GW----------GWA----------------GGWPLGYDLEGKTVGILGLGR--------- 172 (336)
T ss_pred HHHHHhhhhhhhhhhhcC-Cc----------ccc----------------CCccccccccCCEEEEecCcH---------
Confidence 999999999999877654 22 011 111234456678999998862
Q ss_pred ccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeeccccccccccccc
Q psy13054 228 KWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSNGTAL 307 (1128)
Q Consensus 228 ~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~~~~~ 307 (1128)
||+.+++++.+|++. +.|..+..-..+.+.++
T Consensus 173 ------------------------IG~~ia~rL~~Fg~~------------------------i~y~~r~~~~~~~~~~~ 204 (336)
T KOG0069|consen 173 ------------------------IGKAIAKRLKPFGCV------------------------ILYHSRTQLPPEEAYEY 204 (336)
T ss_pred ------------------------HHHHHHHhhhhccce------------------------eeeecccCCchhhHHHh
Confidence 678888888877532 12222222223334556
Q ss_pred CCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCC
Q psy13054 308 GAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEP 387 (1128)
Q Consensus 308 g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EP 387 (1128)
+.++++++|++++||+|++|||||++|+||||++.|++||+|++|||+|||+++||+||++||++|+|++||||||++||
T Consensus 205 ~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP 284 (336)
T KOG0069|consen 205 YAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP 284 (336)
T ss_pred cccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC
Confidence 77788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHH
Q psy13054 388 LPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEEL 432 (1128)
Q Consensus 388 l~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~ 432 (1128)
+.++||++++|| +++||++++|.+ ..++.|+.+||.+.
T Consensus 285 -~~~~~l~~~dnv------v~~PHigs~t~~t~~~m~~~v~~n~~~~~~g~ 328 (336)
T KOG0069|consen 285 -PVDHPLLTLDNV------VILPHIGSATLETREKMAEIVLNNLLAFFSGK 328 (336)
T ss_pred -CCCcchhcccce------eEecccccCcHHHHHHHHHHHHHHHHHHHccC
Confidence 999999999999 999999999984 56678888888765
No 39
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=8.6e-49 Score=446.80 Aligned_cols=294 Identities=19% Similarity=0.277 Sum_probs=230.1
Q ss_pred CceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccC-CCceEEEEcCcccccccHHHHHhCCcEEEecCC
Q psy13054 56 RFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSG-ENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGP 134 (1128)
Q Consensus 56 ~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~-~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg 134 (1128)
.+++...+. ..+. ++.+.++++|+++++..++++++++++++ ++||+|+++|+|+||||+++|+++||.|+|+|+
T Consensus 25 ~~~~~~~~~---~~~~-~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~ 100 (330)
T PRK12480 25 NVEVTTSKE---LLSS-ATVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPS 100 (330)
T ss_pred CeEEEEcCC---CCCH-HHHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEecccccchhhHHHHHHCCCEEEeCCC
Confidence 355555432 2444 45899999999998766789999999973 389999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeee
Q psy13054 135 VSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLI 214 (1128)
Q Consensus 135 ~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~gii 214 (1128)
+++++||||++++||++.|+++.+++.++++ .| .|.. ...+..+.|+++|||
T Consensus 101 ~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~-~~----------~w~~-----------------~~~~~~l~g~~VgII 152 (330)
T PRK12480 101 YSPETIAEYSVSIALQLVRRFPDIERRVQAH-DF----------TWQA-----------------EIMSKPVKNMTVAII 152 (330)
T ss_pred CChHHHHHHHHHHHHHHHHhHHHHHHHHHhC-Cc----------cccc-----------------ccCccccCCCEEEEE
Confidence 9999999999999999999999988766553 11 1210 011223556788999
Q ss_pred eccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceee
Q psy13054 215 SLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYF 294 (1128)
Q Consensus 215 Glg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~ 294 (1128)
|+|. +|+.+++++.++++. ++
T Consensus 153 G~G~---------------------------------IG~~vA~~L~~~G~~--------------------------V~ 173 (330)
T PRK12480 153 GTGR---------------------------------IGAATAKIYAGFGAT--------------------------IT 173 (330)
T ss_pred CCCH---------------------------------HHHHHHHHHHhCCCE--------------------------EE
Confidence 8873 577788887766543 33
Q ss_pred cccccccccccccCCccc-CHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcC
Q psy13054 295 GYNWFERSNGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDK 373 (1128)
Q Consensus 295 g~~~~~~~~~~~~g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG 373 (1128)
+|++....... ..++. ++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|
T Consensus 174 ~~d~~~~~~~~--~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g 251 (330)
T PRK12480 174 AYDAYPNKDLD--FLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDG 251 (330)
T ss_pred EEeCChhHhhh--hhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcC
Confidence 34432211111 12333 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChhhhHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcee
Q psy13054 374 KIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHPLVQLDNCEEFFEELFDKNFQSIDPPGAEPGSGQNL 453 (1128)
Q Consensus 374 ~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~nv 453 (1128)
+|+|||||||++||++... +....... ++...++.++|||
T Consensus 252 ~i~gaalDV~~~EP~~~~~--------------------------------------~~~~~~~~--~~~~~~L~~~~nv 291 (330)
T PRK12480 252 TLLGAAIDTYENEAAYFTN--------------------------------------DWTNKDID--DKTLLELIEHERI 291 (330)
T ss_pred CeeEEEEeccCCCCccccc--------------------------------------cccccccC--chhhHHHhcCCCE
Confidence 9999999999999942110 00000000 1222346778999
Q ss_pred EEeccccccccCccchhhhcccccccccc
Q psy13054 454 ATTSKSCILKDKTLPRISASHLLPFKKYS 482 (1128)
Q Consensus 454 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1128)
++|||.|++|++++.++...+++|+.+|.
T Consensus 292 ilTPHia~~t~~~~~~~~~~~~~n~~~~~ 320 (330)
T PRK12480 292 LVTPHIAFFSDEAVQNLVEGGLNAALSVI 320 (330)
T ss_pred EECCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998875
No 40
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=2.5e-46 Score=429.76 Aligned_cols=251 Identities=22% Similarity=0.274 Sum_probs=209.0
Q ss_pred CceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecCCC
Q psy13054 56 RFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPV 135 (1128)
Q Consensus 56 ~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~ 135 (1128)
.++|.+.+. ...+. +.++++|++++++.+++++++++ . ++||+|+++++|+||||+++|+++||.|+|+||+
T Consensus 19 ~~ev~~~~~--~~~~~----~~l~daD~liv~s~t~v~~~ll~-~-~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~ 90 (378)
T PRK15438 19 LGEVKAVPG--RPIPV----AQLADADALMVRSVTKVNESLLA-G-KPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGC 90 (378)
T ss_pred cCcEEEeCC--CCCCH----HHhCCCcEEEEcCCCCCCHHHhc-C-CCCeEEEECcccccccCHHHHHHCCCEEEECCCc
Confidence 357777653 22343 34689999999887899999997 3 7999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeee
Q psy13054 136 SSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLIS 215 (1128)
Q Consensus 136 ~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiG 215 (1128)
|+.+||||++++||++.|+.. ..+.+||+||||
T Consensus 91 na~aVAE~~~~~lL~l~r~~g-----------------------------------------------~~L~gktvGIIG 123 (378)
T PRK15438 91 NAIAVVEYVFSSLLMLAERDG-----------------------------------------------FSLHDRTVGIVG 123 (378)
T ss_pred CchHHHHHHHHHHHHHhccCC-----------------------------------------------CCcCCCEEEEEC
Confidence 999999999999999988521 013468999999
Q ss_pred ccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeec
Q psy13054 216 LKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFG 295 (1128)
Q Consensus 216 lg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g 295 (1128)
+|+ ||+++++++++|++. +++
T Consensus 124 ~G~---------------------------------IG~~vA~~l~a~G~~--------------------------V~~ 144 (378)
T PRK15438 124 VGN---------------------------------VGRRLQARLEALGIK--------------------------TLL 144 (378)
T ss_pred cCH---------------------------------HHHHHHHHHHHCCCE--------------------------EEE
Confidence 974 688899998887653 344
Q ss_pred ccccccccccccCCcccCHHHHhhcCCEEEEecCCCcc----cccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHH
Q psy13054 296 YNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKD----TEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLK 371 (1128)
Q Consensus 296 ~~~~~~~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~----T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~ 371 (1128)
||+...+. .....+++|+|++++|||||+|+|||++ |+||||++.|++||+|++|||+|||++|||+||++||+
T Consensus 145 ~dp~~~~~--~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~ 222 (378)
T PRK15438 145 CDPPRADR--GDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLN 222 (378)
T ss_pred ECCccccc--ccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHH
Confidence 44322111 1123567999999999999999999996 99999999999999999999999999999999999999
Q ss_pred cCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHH
Q psy13054 372 DKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFE 430 (1128)
Q Consensus 372 sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~ 430 (1128)
+|++.||+||||++||. .++||+..++ ++|||++++|.+ .+.++|+.+|+.
T Consensus 223 ~g~~~ga~LDV~e~EP~-~~~~Ll~~~~-------i~TPHiAg~s~e~~~~~~~~~~~~l~~~~~ 279 (378)
T PRK15438 223 EGQKLSVVLDVWEGEPE-LNVELLKKVD-------IGTPHIAGYTLEGKARGTTQVFEAYSKFIG 279 (378)
T ss_pred hCCCcEEEEecCCCCCC-CchhhhhcCC-------EECCccCcCcHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999995 5778877654 689999999885 445688888764
No 41
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=5.6e-46 Score=424.75 Aligned_cols=267 Identities=21% Similarity=0.315 Sum_probs=218.3
Q ss_pred HHHHHHhcCCceEEEeCCCCCCCHHHHhccCCC--ceEEEEcCcccccccHHHHHhCCcEEEecCCCCchhHHHHHHHHH
Q psy13054 71 RDIFIEKLKGCSALLCNPHQKVDKEVLDRSGEN--LKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLA 148 (1128)
Q Consensus 71 ~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~--LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~~~~aVAE~alalm 148 (1128)
.+|+++.++++|+++++..+++++++|+++ |+ ||+|+++|+|+||||+++|+++||.|+|+|++++++||||++++|
T Consensus 36 ~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~ 114 (332)
T PRK08605 36 TDDNVEEVEGFDGLSLSQQIPLSEAIYKLL-NELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQA 114 (332)
T ss_pred CHHHHHHhcCCCEEEEecCCCCCHHHHHhh-hhcCceEEEEcccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHH
Confidence 356678999999999887789999999987 55 999999999999999999999999999999999999999999999
Q ss_pred HHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeeccccccCCCCCcc
Q psy13054 149 IAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPK 228 (1128)
Q Consensus 149 L~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~ 228 (1128)
|+++|++...++.++++ .| .|.. .+.+..+.|+++||||+|.
T Consensus 115 l~~~R~~~~~~~~~~~~-~~----------~~~~-----------------~~~~~~l~g~~VgIIG~G~---------- 156 (332)
T PRK08605 115 INLVRHFNQIQTKVREH-DF----------RWEP-----------------PILSRSIKDLKVAVIGTGR---------- 156 (332)
T ss_pred HHHhcChHHHHHHHHhC-Cc----------cccc-----------------ccccceeCCCEEEEECCCH----------
Confidence 99999999988766543 12 1211 0112335678899999873
Q ss_pred cccCCccccccccccccccccchhhHhHhhhc-cCCceeeeeeCCCCCCCCccccccCCccccceeeccccccccccccc
Q psy13054 229 WRMGSKTDTNHYFKAFENSTGAFLSSEINNSL-KGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSNGTAL 307 (1128)
Q Consensus 229 w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l-~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~~~~~ 307 (1128)
+|+.+++++ .++++. +.+|++...... ..
T Consensus 157 -----------------------IG~~vA~~L~~~~g~~--------------------------V~~~d~~~~~~~-~~ 186 (332)
T PRK08605 157 -----------------------IGLAVAKIFAKGYGSD--------------------------VVAYDPFPNAKA-AT 186 (332)
T ss_pred -----------------------HHHHHHHHHHhcCCCE--------------------------EEEECCCccHhH-Hh
Confidence 577788887 566543 233333221111 11
Q ss_pred CCccc-CHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCC
Q psy13054 308 GAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPE 386 (1128)
Q Consensus 308 g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~E 386 (1128)
.++++ ++++++++||+|++|+|+|++|++++|++.|++||+|++|||+|||.++|++||++||++|+|+||+||||++|
T Consensus 187 ~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~E 266 (332)
T PRK08605 187 YVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFE 266 (332)
T ss_pred hccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCC
Confidence 23444 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C--CCCCC-----------CcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHH
Q psy13054 387 P--LPADH-----------PLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEEL 432 (1128)
Q Consensus 387 P--l~~~~-----------pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~ 432 (1128)
| +|.+| |||++||| ++|||+++.|.+ ...++|+.+|+++.
T Consensus 267 p~~~~~~~~~~~~~~~~~~~L~~~~nv------ilTPHia~~t~e~~~~~~~~~~~n~~~~~~g~ 325 (332)
T PRK08605 267 RPLFPSDQRGQTINDPLLESLINREDV------ILTPHIAFYTDAAVKNLIVDALDATLEVLQTG 325 (332)
T ss_pred CCccccccccccccchhhHHHhcCCCE------EECCcccccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8 46665 49999999 999999999874 34567777777654
No 42
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.2e-45 Score=425.56 Aligned_cols=259 Identities=22% Similarity=0.296 Sum_probs=214.6
Q ss_pred ceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecCCCC
Q psy13054 57 FDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVS 136 (1128)
Q Consensus 57 ~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~~ 136 (1128)
.++...+. ...+ .+.++++|++++++.+++++++|+. ++||+|+++++|+||||+++|+++||.|+|+||+|
T Consensus 20 ~~v~~~~~--~~~~----~~~l~daD~liv~~~t~v~~~ll~~--~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~n 91 (381)
T PRK00257 20 GEIRRLPG--RAFD----RAAVRDADVLLVRSVTRVDRALLEG--SRVRFVGTCTIGTDHLDLDYFAEAGITWSSAPGCN 91 (381)
T ss_pred CcEEEcCC--cccC----HHHhCCceEEEEeCCCCCCHHHhcC--CCCeEEEECCccccccCHHHHHHCCCEEEECCCcC
Confidence 46666652 1122 3467999999998878999999983 79999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeec
Q psy13054 137 SDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISL 216 (1128)
Q Consensus 137 ~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGl 216 (1128)
+.+||||++++||++.|+.. ..+.+||+||||+
T Consensus 92 a~aVAE~v~~~lL~l~r~~g-----------------------------------------------~~l~gktvGIIG~ 124 (381)
T PRK00257 92 ARGVVDYVLGSLLTLAEREG-----------------------------------------------VDLAERTYGVVGA 124 (381)
T ss_pred hHHHHHHHHHHHHHHhcccC-----------------------------------------------CCcCcCEEEEECC
Confidence 99999999999999988511 0134689999999
Q ss_pred cccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeecc
Q psy13054 217 KDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGY 296 (1128)
Q Consensus 217 g~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~ 296 (1128)
|+ ||+.+++++.++++. +++|
T Consensus 125 G~---------------------------------IG~~va~~l~a~G~~--------------------------V~~~ 145 (381)
T PRK00257 125 GH---------------------------------VGGRLVRVLRGLGWK--------------------------VLVC 145 (381)
T ss_pred CH---------------------------------HHHHHHHHHHHCCCE--------------------------EEEE
Confidence 74 678888888877653 3344
Q ss_pred cccccccccccCCcccCHHHHhhcCCEEEEecCCCc----ccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHc
Q psy13054 297 NWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTK----DTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKD 372 (1128)
Q Consensus 297 ~~~~~~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~----~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~s 372 (1128)
|+.... ...+..+++|+|++++||+|++|+|||+ +|+||||++.|++||+|++|||+|||++||++||++||++
T Consensus 146 Dp~~~~--~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~ 223 (381)
T PRK00257 146 DPPRQE--AEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLS 223 (381)
T ss_pred CCcccc--cccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHh
Confidence 432211 1123457799999999999999999999 5999999999999999999999999999999999999999
Q ss_pred CCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHHHHhhhcc
Q psy13054 373 KKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEELFDKNFQS 439 (1128)
Q Consensus 373 G~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~~~~~~~~ 439 (1128)
|+|+||+||||++||. .++||+.. |+ ++|||+++++.+ .+.++|+.+|+.......+..
T Consensus 224 g~i~~a~LDV~e~EP~-~~~~L~~~-nv------i~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~~~~~~~~ 288 (381)
T PRK00257 224 GEDLDAVLDVWEGEPQ-IDLELADL-CT------IATPHIAGYSLDGKARGTAQIYQALCRFFGIPARVSLTD 288 (381)
T ss_pred CCCcEEEEeCCCCCCC-CChhhhhC-CE------EEcCccccCCHHHHHHHHHHHHHHHHHHHcCCCccchhc
Confidence 9999999999999995 67899986 98 999999999885 456788888887665444443
No 43
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=8.1e-44 Score=402.81 Aligned_cols=253 Identities=17% Similarity=0.193 Sum_probs=200.0
Q ss_pred cCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHH-----HHhCCcEEEecCC-CCchhHHHHHHHHHHHH
Q psy13054 78 LKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDE-----IKSRGIRVGTVGP-VSSDTVAEYNIGLAIAV 151 (1128)
Q Consensus 78 l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~a-----a~erGI~V~n~pg-~~~~aVAE~alalmL~l 151 (1128)
.+++|+++++. .+.++++ . ++||+|++.|+|+||+|.+. +.++||.|+|+++ .++.+||||++++||++
T Consensus 36 ~~~a~~~~~~~---~~~~~l~-~-~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~ 110 (312)
T PRK15469 36 NDPADYALVWH---PPVEMLA-G-RDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHW 110 (312)
T ss_pred CccCeEEEEeC---CChHHhc-c-CCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHH
Confidence 37899998864 2567786 3 79999999999999998332 3458999999974 68999999999999999
Q ss_pred hhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeeccccccCCCCCccccc
Q psy13054 152 SRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKWRM 231 (1128)
Q Consensus 152 ~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w~i 231 (1128)
.|+++...+..++ +.|... .+..+.+||+||+|+|.
T Consensus 111 ~r~~~~~~~~~~~-------------~~w~~~------------------~~~~l~g~tvgIvG~G~------------- 146 (312)
T PRK15469 111 FRRFDDYQALQNS-------------SHWQPL------------------PEYHREDFTIGILGAGV------------- 146 (312)
T ss_pred HcChHHHHHHHHh-------------CCcCCC------------------CCCCcCCCEEEEECCCH-------------
Confidence 9999987664433 234210 01123468999999973
Q ss_pred CCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeeccccccccc--ccccCC
Q psy13054 232 GSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSN--GTALGA 309 (1128)
Q Consensus 232 g~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~--~~~~g~ 309 (1128)
||+++++++++|++.+. +|+++.+.. .... .
T Consensus 147 --------------------IG~~vA~~l~afG~~V~--------------------------~~~~~~~~~~~~~~~-~ 179 (312)
T PRK15469 147 --------------------LGSKVAQSLQTWGFPLR--------------------------CWSRSRKSWPGVQSF-A 179 (312)
T ss_pred --------------------HHHHHHHHHHHCCCEEE--------------------------EEeCCCCCCCCceee-c
Confidence 68889999988776422 222211110 0111 1
Q ss_pred cccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCCCC
Q psy13054 310 QLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLP 389 (1128)
Q Consensus 310 ~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EPl~ 389 (1128)
...+|++++++||||++|||+|++|+|+||++.|++||+|++|||+|||++|||+||++||++|+|+||+||||++||+|
T Consensus 180 ~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~ 259 (312)
T PRK15469 180 GREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLP 259 (312)
T ss_pred ccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCC
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCCCCCcccccccCCCCChhh----hHHHHHHHHHHHH
Q psy13054 390 ADHPLVQLDNCGGAGLDVMIPEPLPADHPL----VQLDNCEEFFEEL 432 (1128)
Q Consensus 390 ~~~pL~~lpNvg~~~~~v~tph~~~~t~~~----~~~~n~~~~~~~~ 432 (1128)
.++|||++||| ++|||+++.|.+. ...+|+..|.++.
T Consensus 260 ~~~pl~~~~nv------i~TPHiag~t~~~~~~~~~~~n~~~~~~g~ 300 (312)
T PRK15469 260 PESPLWQHPRV------AITPHVAAVTRPAEAVEYISRTIAQLEKGE 300 (312)
T ss_pred CCChhhcCCCe------EECCcCCCCcCHHHHHHHHHHHHHHHHcCC
Confidence 99999999999 9999999998743 2345555555443
No 44
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.9e-42 Score=389.59 Aligned_cols=244 Identities=20% Similarity=0.312 Sum_probs=192.5
Q ss_pred cCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHH
Q psy13054 78 LKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQ 157 (1128)
Q Consensus 78 l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~ 157 (1128)
..++|++++.. . .+ . +++||+|++.|+|+||||+++|+++||.++| +|.++.+||||++++||+++|++..
T Consensus 32 ~~~a~~~~~~~-~-----~~-~-~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~-~g~~~~~VAE~~l~l~L~l~R~i~~ 102 (303)
T PRK06436 32 YYDAEAILIKG-R-----YV-P-GKKTKMIQSLSAGVDHIDVSGIPENVVLCSN-AGAYSISVAEHAFALLLAWAKNICE 102 (303)
T ss_pred cCCCCEEEecC-C-----cC-C-CCCeEEEEECCcccCcccHHHHHhCCeEEEc-CCCCcHHHHHHHHHHHHHHHcChHH
Confidence 35788886543 1 12 2 4799999999999999999999999887776 5788999999999999999999998
Q ss_pred HHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeeccccccCCCCCcccccCCcccc
Q psy13054 158 RHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDT 237 (1128)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~ 237 (1128)
.++.++++ .|... .+..+.||++||+|+|+
T Consensus 103 ~~~~~~~g-------------~w~~~------------------~~~~L~gktvgIiG~G~------------------- 132 (303)
T PRK06436 103 NNYNMKNG-------------NFKQS------------------PTKLLYNKSLGILGYGG------------------- 132 (303)
T ss_pred HHHHHHcC-------------CCCCC------------------CCCCCCCCEEEEECcCH-------------------
Confidence 88766542 34310 01235678999999973
Q ss_pred ccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeecccccccccccccCCcccCHHHH
Q psy13054 238 NHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSNGTALGAQLVPLDTL 317 (1128)
Q Consensus 238 ~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~vsLdeL 317 (1128)
||+++++++++|++. +++|+++..+. .....+.+++|+
T Consensus 133 --------------IG~~vA~~l~afG~~--------------------------V~~~~r~~~~~--~~~~~~~~l~el 170 (303)
T PRK06436 133 --------------IGRRVALLAKAFGMN--------------------------IYAYTRSYVND--GISSIYMEPEDI 170 (303)
T ss_pred --------------HHHHHHHHHHHCCCE--------------------------EEEECCCCccc--CcccccCCHHHH
Confidence 678888888877653 23344322111 111125699999
Q ss_pred hhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccC
Q psy13054 318 CAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQL 397 (1128)
Q Consensus 318 l~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~l 397 (1128)
+++||+|++|||+|++|+||||++.|++||||++|||+|||++|||+||++||++|+|+||+||||++||+++++ .+
T Consensus 171 l~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~---~~ 247 (303)
T PRK06436 171 MKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET---NP 247 (303)
T ss_pred HhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC---CC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988776 68
Q ss_pred CCCCCCCcccccccCCC-CChh------hhHHHHHHHHHHH
Q psy13054 398 DNCGGAGLDVMIPEPLP-ADHP------LVQLDNCEEFFEE 431 (1128)
Q Consensus 398 pNvg~~~~~v~tph~~~-~t~~------~~~~~n~~~~~~~ 431 (1128)
||| ++|||+++ ++.+ ...++|+.+|+++
T Consensus 248 ~nv------iiTPHi~g~~t~e~~~~~~~~~~~ni~~~~~g 282 (303)
T PRK06436 248 DNV------ILSPHVAGGMSGEIMQPAVALAFENIKNFFEG 282 (303)
T ss_pred CCE------EECCccccccCHHHHHHHHHHHHHHHHHHHcC
Confidence 999 99999865 4443 2245666666553
No 45
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=1.5e-43 Score=371.10 Aligned_cols=177 Identities=44% Similarity=0.653 Sum_probs=157.6
Q ss_pred HHHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hh
Q psy13054 917 IGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GT 995 (1128)
Q Consensus 917 laliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~ 995 (1128)
+++||++.|++..+++.+++|.|.. .......+++|+||||||+|+||+++|++|++|||+|++||++..... ..
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~----~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~ 76 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWAS----RERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD 76 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHH----HTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCC----CcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc
Confidence 6899999999999999999999921 113345589999999999999999999999999999999998887655 55
Q ss_pred hcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCC
Q psy13054 996 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIP 1075 (1128)
Q Consensus 996 ~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~ 1075 (1128)
..++.+.+++|++++||+|++|||+|++|+|+||++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++
T Consensus 77 ~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~ 156 (178)
T PF02826_consen 77 EFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEP 156 (178)
T ss_dssp HTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SS
T ss_pred cccceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCC
Confidence 66778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccCCCeEECCCCC
Q psy13054 1076 EPLPADHPLVQLDNCVLTPHTS 1097 (1128)
Q Consensus 1076 EPl~~~~pL~~~pNvilTPHia 1097 (1128)
||+|.++|||++|||++|||+|
T Consensus 157 EP~~~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 157 EPLPADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp SSSSTTHHHHTSTTEEEESS-T
T ss_pred CCCCCCChHHcCCCEEEeCccC
Confidence 9999999999999999999987
No 46
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=2.8e-37 Score=323.66 Aligned_cols=176 Identities=32% Similarity=0.505 Sum_probs=142.6
Q ss_pred HHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeeccccccCCC
Q psy13054 145 IGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGS 224 (1128)
Q Consensus 145 lalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~ 224 (1128)
+++||++.|++..++++++++ .|... ....+..+.++++||+|+|+
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~-~W~~~---------------------------~~~~~~~l~g~tvgIiG~G~------ 46 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNG-EWASR---------------------------ERFPGRELRGKTVGIIGYGR------ 46 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTT-BHHHH---------------------------TTTTBS-STTSEEEEESTSH------
T ss_pred ChHHHHHHhCHHHHHHHHHcC-CCCCC---------------------------cCCCccccCCCEEEEEEEcC------
Confidence 689999999999999887664 44110 01123345678999999973
Q ss_pred CCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeeccccccccc-
Q psy13054 225 QNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSN- 303 (1128)
Q Consensus 225 ~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~- 303 (1128)
||+++++++++|++. +++|+++.+..
T Consensus 47 ---------------------------IG~~vA~~l~~fG~~--------------------------V~~~d~~~~~~~ 73 (178)
T PF02826_consen 47 ---------------------------IGRAVARRLKAFGMR--------------------------VIGYDRSPKPEE 73 (178)
T ss_dssp ---------------------------HHHHHHHHHHHTT-E--------------------------EEEEESSCHHHH
T ss_pred ---------------------------CcCeEeeeeecCCce--------------------------eEEecccCChhh
Confidence 688999999887653 44555444332
Q ss_pred -ccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEec
Q psy13054 304 -GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDV 382 (1128)
Q Consensus 304 -~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDV 382 (1128)
....++++.+|+|++++||||++|||+|++|+||||++.|++||+|++|||+|||++|||+||++||++|+|+||+|||
T Consensus 74 ~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV 153 (178)
T PF02826_consen 74 GADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDV 153 (178)
T ss_dssp HHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS
T ss_pred hcccccceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEEC
Confidence 3456778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcccCCCCCCCCcccccccCC
Q psy13054 383 MIPEPLPADHPLVQLDNCGGAGLDVMIPEPL 413 (1128)
Q Consensus 383 fe~EPl~~~~pL~~lpNvg~~~~~v~tph~~ 413 (1128)
|++||++.++||+++||| ++|||++
T Consensus 154 ~~~EP~~~~~~l~~~~nv------i~TPH~a 178 (178)
T PF02826_consen 154 FEPEPLPADSPLWDLPNV------ILTPHIA 178 (178)
T ss_dssp -SSSSSSTTHHHHTSTTE------EEESS-T
T ss_pred CCCCCCCCCChHHcCCCE------EEeCccC
Confidence 999999999999999999 9999985
No 47
>KOG0067|consensus
Probab=99.95 E-value=3.3e-28 Score=267.86 Aligned_cols=256 Identities=27% Similarity=0.385 Sum_probs=229.5
Q ss_pred eecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCC
Q psy13054 860 LYTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEW 939 (1128)
Q Consensus 860 ~~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w 939 (1128)
.+-.++++-+++. +-||++...+.|+|++|+.+|.+.||.|||.|+..-+.+|+-++.++|.++|+.....+..++|.|
T Consensus 81 h~i~l~reDlEkf-kalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~~ 159 (435)
T KOG0067|consen 81 HTITLPREDLEKF-KALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWLCQALREGTC 159 (435)
T ss_pred eecccchhhHHHh-hhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchhhhhhcccce
Confidence 3567889999997 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc--ccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCccc-ChHhhhccCCEEEE
Q psy13054 940 ALKQ--THIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLV-PLDTLCAESDFIFV 1016 (1128)
Q Consensus 940 ~~~~--~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~-~l~ell~~sDvV~l 1016 (1128)
.... -..+.......+|.++|++|+|++|++++.++++||+.|+.||++...-....+|.+++ ++++++.+||.+++
T Consensus 160 ~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVytlqd~~~~sd~~S~ 239 (435)
T KOG0067|consen 160 TQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYTLQDLLYQSDCVSL 239 (435)
T ss_pred eechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhcccceecccchhhhhccceee
Confidence 6321 00111122378999999999999999999999999999999999887655566777776 89999999999999
Q ss_pred ecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCC-CCCCccccCCCeEECCC
Q psy13054 1017 TCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL-PADHPLVQLDNCVLTPH 1095 (1128)
Q Consensus 1017 ~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl-~~~~pL~~~pNvilTPH 1095 (1128)
||-+++.++++|+.-.+++|+.|++++|++||.++|+.+|.++|+.|++.+++ |. -...||.+-||.+.|||
T Consensus 240 hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-------~~~~~~~~l~d~pn~ic~~~ 312 (435)
T KOG0067|consen 240 HCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-------PRSFKQGPLKDAPNLICTPH 312 (435)
T ss_pred ecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-------CcccccccccCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999997 22 13468999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q psy13054 1096 TSSATKAVRDEKSSTSAENIIRGYKGEP 1123 (1128)
Q Consensus 1096 iag~t~e~~~~~~~~~~~nl~~~l~G~~ 1123 (1128)
.+++++.+..++-+.+...+++-+.|.-
T Consensus 313 ta~~~e~~~~e~re~aa~eiR~ai~g~i 340 (435)
T KOG0067|consen 313 TAWYSEAASVELREVAALEIRRAITGRI 340 (435)
T ss_pred cchhhHHHHHHHHHHHhhhhhhccCCCC
Confidence 9999999999999999999998887753
No 48
>KOG0067|consensus
Probab=99.89 E-value=1.7e-23 Score=230.86 Aligned_cols=247 Identities=21% Similarity=0.294 Sum_probs=184.9
Q ss_pred HhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecCCCCchhHHHHHHHHHHHHhhch
Q psy13054 76 EKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRF 155 (1128)
Q Consensus 76 ~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i 155 (1128)
+.+.++-+-.......++++=+++. +.||+|.+.+.|+||+|+.+|.+.||.|||.|+..-+.+|+-++.++|.+.|+-
T Consensus 69 kvLneavgam~yh~i~l~reDlEkf-kalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrn 147 (435)
T KOG0067|consen 69 KVLNEAVGAMMYHTITLPREDLEKF-KALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRN 147 (435)
T ss_pred HHHHHhhhcceeeecccchhhHHHh-hhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhccc
Confidence 3344444434444556889999987 679999999999999999999999999999999999999999999999999876
Q ss_pred HHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeeccccccCCCCCcccccCCcc
Q psy13054 156 QQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKT 235 (1128)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t 235 (1128)
.......+ ++.|.. .+++.. .|..|.
T Consensus 148 tw~cq~l~-------------eg~~~q-----------~~~q~~----------------------------e~a~g~-- 173 (435)
T KOG0067|consen 148 TWLCQALR-------------EGTCTQ-----------GLEQVR----------------------------EAACGL-- 173 (435)
T ss_pred chhhhhhc-------------ccceee-----------chhhhh----------------------------hhhhcc--
Confidence 64433222 122211 000000 010010
Q ss_pred ccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeeccccccccc-ccccCCccc-C
Q psy13054 236 DTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSN-GTALGAQLV-P 313 (1128)
Q Consensus 236 ~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~-~~~~g~~~v-s 313 (1128)
.+..|-.++ ++|+|++|++++.++..|+ -.++-||+|-.+. .+.+|.+.| +
T Consensus 174 ----------------------~~~~G~~~g--~~g~gr~g~av~~~A~afg---~~~ifydp~~~~g~~~~lg~~rVyt 226 (435)
T KOG0067|consen 174 ----------------------ARIRGPTLG--LIGFGRTGQAVALRAKAFG---FVVIFYDPYLIDGIDKSLGLQRVYT 226 (435)
T ss_pred ----------------------cccccccee--eeccccccceehhhhhccc---ceeeeecchhhhhhhhhcccceecc
Confidence 111222222 5678888888887644332 2344556554443 667888877 8
Q ss_pred HHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCCC-CCCC
Q psy13054 314 LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL-PADH 392 (1128)
Q Consensus 314 LdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EPl-~~~~ 392 (1128)
|+|++.+||.+|+||-+++.++|+||.-.+++|++|++++|++||++||++||.+||++|+|.+++ |. ....
T Consensus 227 lqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-------~~~~~~~ 299 (435)
T KOG0067|consen 227 LQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-------PRSFKQG 299 (435)
T ss_pred cchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-------Ccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999998 21 1345
Q ss_pred CcccCCCCCCCCcccccccCCCCCh
Q psy13054 393 PLVQLDNCGGAGLDVMIPEPLPADH 417 (1128)
Q Consensus 393 pL~~lpNvg~~~~~v~tph~~~~t~ 417 (1128)
||.+.||. +.+||.++++.
T Consensus 300 ~l~d~pn~------ic~~~ta~~~e 318 (435)
T KOG0067|consen 300 PLKDAPNL------ICTPHTAWYSE 318 (435)
T ss_pred cccCCCCC------CCCcccchhhH
Confidence 78899998 89999987754
No 49
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.80 E-value=5.6e-19 Score=207.04 Aligned_cols=169 Identities=18% Similarity=0.236 Sum_probs=139.8
Q ss_pred ccccCCcC-ChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEE
Q psy13054 882 FSVGYDHL-ELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVG 960 (1128)
Q Consensus 882 ~~aGvd~i-dl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvG 960 (1128)
+++|+..+ .++...+.+|+|+|+|++++.++||+++++++++. +..+|.+. ..+.||++|
T Consensus 198 TttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~------d~~~R~~~-------------~~LaGKtVg 258 (476)
T PTZ00075 198 TTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLI------DGIFRATD-------------VMIAGKTVV 258 (476)
T ss_pred chHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHH------HHHHHhcC-------------CCcCCCEEE
Confidence 45666553 23344456899999999999999999999999988 33344432 258999999
Q ss_pred EEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCC
Q psy13054 961 IVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPT 1039 (1128)
Q Consensus 961 IIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~g 1039 (1128)
|||+|.||+.+|++|++|||+|++++..+.+.. +...|++.+++++++++||+|++|+ .|+++|+++.|++||+|
T Consensus 259 VIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKpG 334 (476)
T PTZ00075 259 VCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKNN 334 (476)
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECC----CcccccCHHHHhccCCC
Confidence 999999999999999999999999976655442 3445777789999999999999984 47899999999999999
Q ss_pred cEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCC
Q psy13054 1040 AILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPA 1080 (1128)
Q Consensus 1040 a~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~ 1080 (1128)
++|||+||+ |++.++++|+.+. ++||++.||...
T Consensus 335 AiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~ 368 (476)
T PTZ00075 335 AIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD 368 (476)
T ss_pred cEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence 999999999 7889999998754 699999999654
No 50
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.67 E-value=1.6e-16 Score=178.75 Aligned_cols=157 Identities=18% Similarity=0.185 Sum_probs=130.1
Q ss_pred cCCChhhhhcCCCCccEEEEccccCCcCChh-hhhhCCcEEE------EcCCCChhHHHHHHHHHHHHHHhccHHHHHHH
Q psy13054 862 TSRNKVKTPKRTENLKVITTFSVGYDHLELH-EIKARGIRVG------SVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 (1128)
Q Consensus 862 ~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~-a~~~~GI~V~------n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~ 934 (1128)
.++++++++.+ | .++...+|+++.|++ +|+++||+|+ |++.+|+.++||+++++++..
T Consensus 80 ~~l~~~~l~~~-~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~----------- 144 (287)
T TIGR02853 80 VVLTPELLEST-K---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH----------- 144 (287)
T ss_pred ccccHHHHHhc-C---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh-----------
Confidence 45788999886 5 488899999999999 9999999999 999999999999999988732
Q ss_pred HcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc---cChHhhhcc
Q psy13054 935 TSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL---VPLDTLCAE 1010 (1128)
Q Consensus 935 ~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~---~~l~ell~~ 1010 (1128)
.. .+++|++++|+|+|.||+.+|+.|+++|++|.+++++..+.. ..+.+... .++++++++
T Consensus 145 --~~-------------~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~ 209 (287)
T TIGR02853 145 --TD-------------FTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAE 209 (287)
T ss_pred --cC-------------CCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhcc
Confidence 01 158899999999999999999999999999999987654432 33344443 357789999
Q ss_pred CCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCc-ccCH
Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGG-LLDQ 1053 (1128)
Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~-lVde 1053 (1128)
+|+|++|+|.+ +++++.++.||+++++||++... -+|.
T Consensus 210 aDiVint~P~~-----ii~~~~l~~~k~~aliIDlas~Pg~tdf 248 (287)
T TIGR02853 210 IDIVINTIPAL-----VLTADVLSKLPKHAVIIDLASKPGGTDF 248 (287)
T ss_pred CCEEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCCCCCCH
Confidence 99999999974 78899999999999999998754 3444
No 51
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.59 E-value=4.1e-15 Score=174.81 Aligned_cols=170 Identities=15% Similarity=0.128 Sum_probs=126.7
Q ss_pred EcCcccccc-cHHHHHhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCccccccc
Q psy13054 109 TFSVGHDHL-HLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNL 187 (1128)
Q Consensus 109 ~~gvG~DnI-Dl~aa~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (1128)
-.++|+... .++...+.||+|+|+|++++.++||+++++++++...+. |.+
T Consensus 197 eTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~------R~~---------------------- 248 (476)
T PTZ00075 197 ETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLIDGIF------RAT---------------------- 248 (476)
T ss_pred cchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHHHHH------Hhc----------------------
Confidence 345666654 333444568999999999999999999999999983333 210
Q ss_pred ccceEeecCccccccccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceee
Q psy13054 188 HNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFE 267 (1128)
Q Consensus 188 ~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~ 267 (1128)
+..+.||+++|+|+|. ||+.++++++++++.+
T Consensus 249 ---------------~~~LaGKtVgVIG~G~---------------------------------IGr~vA~rL~a~Ga~V 280 (476)
T PTZ00075 249 ---------------DVMIAGKTVVVCGYGD---------------------------------VGKGCAQALRGFGARV 280 (476)
T ss_pred ---------------CCCcCCCEEEEECCCH---------------------------------HHHHHHHHHHHCCCEE
Confidence 0113468889998862 6788888888776542
Q ss_pred eeeCCCCCCCCccccccCCccccceeecccccccccccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCC
Q psy13054 268 FFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMK 347 (1128)
Q Consensus 268 ~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK 347 (1128)
.++ ..++.....+...|++.+++++++++||||++|+ .|+|+|+++.|++||
T Consensus 281 iV~------------------------e~dp~~a~~A~~~G~~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MK 332 (476)
T PTZ00075 281 VVT------------------------EIDPICALQAAMEGYQVVTLEDVVETADIFVTAT----GNKDIITLEHMRRMK 332 (476)
T ss_pred EEE------------------------eCCchhHHHHHhcCceeccHHHHHhcCCEEEECC----CcccccCHHHHhccC
Confidence 211 1121111112234777889999999999999984 589999999999999
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCCCC
Q psy13054 348 PTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLP 389 (1128)
Q Consensus 348 ~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EPl~ 389 (1128)
||++|||+||| |+++++++|+++. ++||++.||..
T Consensus 333 pGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v 367 (476)
T PTZ00075 333 NNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQV 367 (476)
T ss_pred CCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCC
Confidence 99999999999 8999999998754 78999999954
No 52
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.59 E-value=8.5e-15 Score=146.45 Aligned_cols=81 Identities=27% Similarity=0.261 Sum_probs=67.7
Q ss_pred EEEEecCCCCchHHHHHhhccceeEEeecC-CChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHH
Q psy13054 834 TVGIVGLGNIGLETAKLLKAFKVSKILYTS-RNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTV 912 (1128)
Q Consensus 834 ~v~i~~~~~~~~e~~~~l~~~~~~~~~~~~-i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sV 912 (1128)
++.+.. ....++..+.++++++++....+ +++++|+.+ |+||||++.|+|+|++|+++|+++||.|+|+||+++.+|
T Consensus 20 ~v~~~~-~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~a~~~gI~V~n~~g~~~~aV 97 (133)
T PF00389_consen 20 EVEFCD-SPSEEELAERLKDADAIIVGSGTPLTAEVLEAA-PNLKLISTAGAGVDNIDLEAAKERGIPVTNVPGYNAEAV 97 (133)
T ss_dssp EEEEES-SSSHHHHHHHHTTESEEEESTTSTBSHHHHHHH-TT-SEEEESSSSCTTB-HHHHHHTTSEEEE-TTTTHHHH
T ss_pred eEEEeC-CCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhcc-ceeEEEEEcccccCcccHHHHhhCeEEEEEeCCcCCcch
Confidence 444444 44566788888888877766555 999999998 999999999999999999999999999999999999999
Q ss_pred HHHH
Q psy13054 913 AEYN 916 (1128)
Q Consensus 913 AE~a 916 (1128)
|||+
T Consensus 98 AE~a 101 (133)
T PF00389_consen 98 AEHA 101 (133)
T ss_dssp HHHH
T ss_pred hccc
Confidence 9999
No 53
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.57 E-value=7.8e-15 Score=146.71 Aligned_cols=96 Identities=29% Similarity=0.437 Sum_probs=82.7
Q ss_pred ccchhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHH
Q psy13054 42 LLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDE 121 (1128)
Q Consensus 42 ~l~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~a 121 (1128)
.+.++.++.|+. .+++.+++. .+.+++.+.++++|+++++..+++++++|+++ |+||+|++.|+|+||||+++
T Consensus 6 ~~~~~~~~~l~~--~~~v~~~~~----~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~ 78 (133)
T PF00389_consen 6 PLPDEEIERLEE--GFEVEFCDS----PSEEELAERLKDADAIIVGSGTPLTAEVLEAA-PNLKLISTAGAGVDNIDLEA 78 (133)
T ss_dssp S-SHHHHHHHHH--TSEEEEESS----SSHHHHHHHHTTESEEEESTTSTBSHHHHHHH-TT-SEEEESSSSCTTB-HHH
T ss_pred cCCHHHHHHHHC--CceEEEeCC----CCHHHHHHHhCCCeEEEEcCCCCcCHHHHhcc-ceeEEEEEcccccCcccHHH
Confidence 467777888873 468888763 46889999999999999987767999999997 89999999999999999999
Q ss_pred HHhCCcEEEecCCCCchhHHHHH
Q psy13054 122 IKSRGIRVGTVGPVSSDTVAEYN 144 (1128)
Q Consensus 122 a~erGI~V~n~pg~~~~aVAE~a 144 (1128)
|+++||.|+|+||+++++||||+
T Consensus 79 a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 79 AKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp HHHTTSEEEE-TTTTHHHHHHHH
T ss_pred HhhCeEEEEEeCCcCCcchhccc
Confidence 99999999999999999999999
No 54
>PLN02494 adenosylhomocysteinase
Probab=99.51 E-value=3.3e-14 Score=166.72 Aligned_cols=120 Identities=22% Similarity=0.284 Sum_probs=106.3
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCch-hhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE-EGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~-~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
.+.||+++|+|+|.||+.+|+++++|||+|++++..+.+. .+...|+..++++++++.+|+|+. +..|+++|+++
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~----tTGt~~vI~~e 326 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVT----TTGNKDIIMVD 326 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEE----CCCCccchHHH
Confidence 4799999999999999999999999999999998766543 355567777789999999999996 55688999999
Q ss_pred HHccCCCCcEEEEcCC-CcccCHHHHHHH--HhcCCceEEEEeccCCCC
Q psy13054 1032 QFSLMKPTAILVNTSR-GGLLDQEALVEF--LKDKKIGGAGLDVMIPEP 1077 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aR-G~lVde~aL~~a--L~~g~i~gaaLDV~e~EP 1077 (1128)
.|+.||+|++|||+|| +..||+++|.++ ++.+.+. +.+|+|+.|-
T Consensus 327 ~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d 374 (477)
T PLN02494 327 HMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD 374 (477)
T ss_pred HHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence 9999999999999999 679999999998 9999998 8899998753
No 55
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.43 E-value=1.3e-12 Score=148.06 Aligned_cols=151 Identities=19% Similarity=0.206 Sum_probs=122.1
Q ss_pred CChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCC------ChhHHHHHHHHHHHHHHhccHHHHHHHHcC
Q psy13054 864 RNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHI------SSDTVAEYNIGLAIAVSRRFQEGRKCITSG 937 (1128)
Q Consensus 864 i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~------~a~sVAE~alaliL~~~R~i~~~~~~~~~g 937 (1128)
++++.++.+ |++..+. .|.+.++++ +.|.++||.+.+.... |+.++||.++.+.+...
T Consensus 83 ~~~~~l~~l-~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~~~------------- 146 (296)
T PRK08306 83 LTEELLELT-PEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIEHT------------- 146 (296)
T ss_pred chHHHHHhc-CCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHHhC-------------
Confidence 467889887 8886444 588889988 8899999999997764 89999999887644110
Q ss_pred CCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc---ChHhhhccCCE
Q psy13054 938 EWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV---PLDTLCAESDF 1013 (1128)
Q Consensus 938 ~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~---~l~ell~~sDv 1013 (1128)
..+++|++++|||+|.+|+.+++.|+++|++|.+++++..+.. ..+.|.+.+ ++.+.++++|+
T Consensus 147 -------------~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDi 213 (296)
T PRK08306 147 -------------PITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDI 213 (296)
T ss_pred -------------CCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCE
Confidence 1146899999999999999999999999999999988765433 445666554 56788999999
Q ss_pred EEEecCCCcccccccCHHHHccCCCCcEEEEcCCC
Q psy13054 1014 IFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRG 1048 (1128)
Q Consensus 1014 V~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG 1048 (1128)
|++++|. .+++++.++.|++++++||++..
T Consensus 214 VI~t~p~-----~~i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 214 IFNTIPA-----LVLTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred EEECCCh-----hhhhHHHHHcCCCCcEEEEEccC
Confidence 9999984 47889999999999999999754
No 56
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.40 E-value=5.7e-13 Score=155.48 Aligned_cols=146 Identities=19% Similarity=0.215 Sum_probs=115.9
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
.+.|++|+|+|+|.||+.+|++++++|++|++++..+.+.. +...|+...+++++++.+|+|+.+. .+.++|+.+
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVItaT----G~~~vI~~~ 267 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITAT----GNKDVIRGE 267 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEEECC----CCHHHHHHH
Confidence 47999999999999999999999999999999986665543 4556777778999999999998754 367899999
Q ss_pred HHccCCCCcEEEEcCCCcc-cCHHHHHHHHhcCCceEEEEeccCCCCCCCCCcccc-----CCCeE-ECCCCCCCcHHHH
Q psy13054 1032 QFSLMKPTAILVNTSRGGL-LDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQ-----LDNCV-LTPHTSSATKAVR 1104 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~l-Vde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~-----~pNvi-lTPHiag~t~e~~ 1104 (1128)
.|+.||+|++++|+||+.+ ||.++|.+++.+.+..+..+|+|.- |.+++++- +=|+. -++|-+-.-+-++
T Consensus 268 ~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~---~~g~~i~ll~~GrlvNl~~~~ghp~~vmd~sf 344 (406)
T TIGR00936 268 HFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL---KDGRRIYLLAEGRLVNLAAAEGHPSEVMDMSF 344 (406)
T ss_pred HHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe---CCCCEEEEEeCCceecccCCCCCcceeeCHHH
Confidence 9999999999999999998 9999999999887777888999873 43444432 22433 3456555444444
Q ss_pred H
Q psy13054 1105 D 1105 (1128)
Q Consensus 1105 ~ 1105 (1128)
.
T Consensus 345 a 345 (406)
T TIGR00936 345 A 345 (406)
T ss_pred H
Confidence 3
No 57
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.37 E-value=7.5e-13 Score=148.61 Aligned_cols=99 Identities=15% Similarity=0.186 Sum_probs=83.8
Q ss_pred ccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhccCCEEEEecCCCcccccccC
Q psy13054 951 IMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIG 1029 (1128)
Q Consensus 951 ~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~ 1029 (1128)
...|.||||||||+|.||+++|++|++|||+|++|++...... +...|++..+++|++++||+|++|+|+ ++|+++++
T Consensus 11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd-~~t~~V~~ 89 (335)
T PRK13403 11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPD-EQQAHVYK 89 (335)
T ss_pred hhhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence 4479999999999999999999999999999999986533322 445577777999999999999999996 78899999
Q ss_pred HHHHccCCCCcEEEEcCCCccc
Q psy13054 1030 RKQFSLMKPTAILVNTSRGGLL 1051 (1128)
Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~lV 1051 (1128)
.+.++.||+|++|+-. .|--|
T Consensus 90 ~eil~~MK~GaiL~f~-hgfni 110 (335)
T PRK13403 90 AEVEENLREGQMLLFS-HGFNI 110 (335)
T ss_pred HHHHhcCCCCCEEEEC-CCcce
Confidence 9999999999988653 44433
No 58
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.30 E-value=4.2e-12 Score=143.13 Aligned_cols=157 Identities=18% Similarity=0.189 Sum_probs=112.3
Q ss_pred CCCHHHHhccCCCceEEEEcCcccccccHH-HHHhCCcEEE------ecCCCCchhHHHHHHHHHHHHhhchHHHHHHHH
Q psy13054 91 KVDKEVLDRSGENLKVIATFSVGHDHLHLD-EIKSRGIRVG------TVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIA 163 (1128)
Q Consensus 91 ~i~~evL~~~~~~LK~I~~~gvG~DnIDl~-aa~erGI~V~------n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~ 163 (1128)
++++++|+++ | .++...+|++|.|++ +|+++||.|+ |++.+|+.+|||+++++++....
T Consensus 81 ~l~~~~l~~~-~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~~---------- 146 (287)
T TIGR02853 81 VLTPELLEST-K---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHTD---------- 146 (287)
T ss_pred cccHHHHHhc-C---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHhcC----------
Confidence 3678999976 3 477889999999999 9999999999 99999999999999987774310
Q ss_pred hhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeeccccccCCCCCcccccCCcccccccccc
Q psy13054 164 RLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKA 243 (1128)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~ 243 (1128)
.+ +.+++++|+|+|.
T Consensus 147 ---------------------~~-------------------l~gk~v~IiG~G~------------------------- 161 (287)
T TIGR02853 147 ---------------------FT-------------------IHGSNVMVLGFGR------------------------- 161 (287)
T ss_pred ---------------------CC-------------------CCCCEEEEEcChH-------------------------
Confidence 01 2346788888862
Q ss_pred ccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeecccccccccccccCC---cccCHHHHhhc
Q psy13054 244 FENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSNGTALGA---QLVPLDTLCAE 320 (1128)
Q Consensus 244 fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~~~~~g~---~~vsLdeLl~~ 320 (1128)
+|+.+++.++++++.+.++.. ... ......+.+. .+.++++++++
T Consensus 162 --------iG~avA~~L~~~G~~V~v~~R--~~~----------------------~~~~~~~~g~~~~~~~~l~~~l~~ 209 (287)
T TIGR02853 162 --------TGMTIARTFSALGARVFVGAR--SSA----------------------DLARITEMGLIPFPLNKLEEKVAE 209 (287)
T ss_pred --------HHHHHHHHHHHCCCEEEEEeC--CHH----------------------HHHHHHHCCCeeecHHHHHHHhcc
Confidence 577888888776543222211 000 0000111222 23367889999
Q ss_pred CCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCC-CccCH
Q psy13054 321 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRG-GLLDQ 363 (1128)
Q Consensus 321 SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG-~lVDe 363 (1128)
+|+|++|+|++ +++++.+++||+++++||++-. +-+|-
T Consensus 210 aDiVint~P~~-----ii~~~~l~~~k~~aliIDlas~Pg~tdf 248 (287)
T TIGR02853 210 IDIVINTIPAL-----VLTADVLSKLPKHAVIIDLASKPGGTDF 248 (287)
T ss_pred CCEEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCCCCCCH
Confidence 99999999984 8899999999999999999753 33454
No 59
>PLN02712 arogenate dehydrogenase
Probab=99.20 E-value=4.7e-10 Score=139.60 Aligned_cols=110 Identities=20% Similarity=0.341 Sum_probs=87.6
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCccc-ChHhhhc-cCCEEEEecCCCcccccccCH
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLV-PLDTLCA-ESDFIFVTCALTKDTEQLIGR 1030 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~-~l~ell~-~sDvV~l~lPlt~~T~~li~~ 1030 (1128)
.+.+++|||||+|.||+.+|+.++.+|++|++||+......+.+.|+... ++++++. ++|+|++|+| ...+..++.+
T Consensus 366 ~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP-~~~~~~vi~~ 444 (667)
T PLN02712 366 DGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTS-ILSTEKVLKS 444 (667)
T ss_pred CCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCC-hHHHHHHHHH
Confidence 67889999999999999999999999999999987643322445666543 7888776 5999999999 5788888876
Q ss_pred HHHccCCCCcEEEEcCCCcccCHHHHHHHHhcC
Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128)
Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128)
-....||+|+++++++.++-...+++.+.+..+
T Consensus 445 l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~ 477 (667)
T PLN02712 445 LPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQD 477 (667)
T ss_pred HHHhcCCCCcEEEECCCccHHHHHHHHHhccCC
Confidence 555579999999999999865566666665543
No 60
>PLN02858 fructose-bisphosphate aldolase
Probab=99.16 E-value=1.9e-10 Score=152.46 Aligned_cols=108 Identities=18% Similarity=0.131 Sum_probs=93.5
Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc-cChHhhhccCCEEEEecCCCccccccc--CH
Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLI--GR 1030 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li--~~ 1030 (1128)
..++|||||+|+||.++|++|...|++|.+||++..+.. ..+.|... .+..+++++||+|++|+|..++++.++ +.
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~ 402 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDL 402 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchh
Confidence 347899999999999999999999999999997765544 44455543 488999999999999999999999887 45
Q ss_pred HHHccCCCCcEEEEcCCCcccCHHHHHHHHhc
Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128)
Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128)
..++.|++|.++|+++....-..+.+.+.+++
T Consensus 403 g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~ 434 (1378)
T PLN02858 403 GAVSALPAGASIVLSSTVSPGFVIQLERRLEN 434 (1378)
T ss_pred hHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh
Confidence 67889999999999999999999999999887
No 61
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.12 E-value=2.1e-10 Score=134.88 Aligned_cols=154 Identities=18% Similarity=0.200 Sum_probs=113.5
Q ss_pred ccccCCcC-ChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEE
Q psy13054 882 FSVGYDHL-ELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVG 960 (1128)
Q Consensus 882 ~~aGvd~i-dl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvG 960 (1128)
+++|+..+ ..+...+.+++|.|++..+..+.-|...+.- ++.|.. ........+.|++++
T Consensus 156 TttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~---------------~s~~~a----i~rat~~~l~Gk~Vl 216 (425)
T PRK05476 156 TTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTG---------------ESLLDG----IKRATNVLIAGKVVV 216 (425)
T ss_pred chHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHH---------------hhhHHH----HHHhccCCCCCCEEE
Confidence 35565543 3344456789999999988876544333222 222220 000001147899999
Q ss_pred EEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCC
Q psy13054 961 IVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPT 1039 (1128)
Q Consensus 961 IIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~g 1039 (1128)
|+|+|.||+.+|++|+++|++|+++|....+.. +...|+...+++++++.+|+|+.+. .+.++|+.+.|+.||+|
T Consensus 217 ViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aT----G~~~vI~~~~~~~mK~G 292 (425)
T PRK05476 217 VAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTAT----GNKDVITAEHMEAMKDG 292 (425)
T ss_pred EECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECC----CCHHHHHHHHHhcCCCC
Confidence 999999999999999999999999987665543 4445777678999999999998764 45678999999999999
Q ss_pred cEEEEcCCCcc-cCHHHHHH
Q psy13054 1040 AILVNTSRGGL-LDQEALVE 1058 (1128)
Q Consensus 1040 a~lIN~aRG~l-Vde~aL~~ 1058 (1128)
++++|+|+... +|.++|.+
T Consensus 293 ailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 293 AILANIGHFDNEIDVAALEE 312 (425)
T ss_pred CEEEEcCCCCCccChHHHhh
Confidence 99999999987 78888754
No 62
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.05 E-value=4.8e-10 Score=114.91 Aligned_cols=102 Identities=22% Similarity=0.354 Sum_probs=76.8
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
.+.||++.|+|||.+|+.+|+.|+++|++|++++..+-+.. +...|++..+++++++++|+++.+.. .+++++.+
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vtaTG----~~~vi~~e 95 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTATG----NKDVITGE 95 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-SS----SSSSB-HH
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEECCC----CccccCHH
Confidence 58999999999999999999999999999999987665543 56678888899999999999987655 35689999
Q ss_pred HHccCCCCcEEEEcCCCcc-cCHHHHHH
Q psy13054 1032 QFSLMKPTAILVNTSRGGL-LDQEALVE 1058 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~l-Vde~aL~~ 1058 (1128)
.|++||+|+++.|++.... +|-+.|.+
T Consensus 96 ~~~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 96 HFRQMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp HHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred HHHHhcCCeEEeccCcCceeEeeccccc
Confidence 9999999999999998665 56666554
No 63
>PLN02494 adenosylhomocysteinase
Probab=99.03 E-value=1.3e-10 Score=136.84 Aligned_cols=117 Identities=17% Similarity=0.167 Sum_probs=96.0
Q ss_pred ccCCceeeeeeCCCCCCCCccccccCCccccceeecccccc--cccccccCCcccCHHHHhhcCCEEEEecCCCcccccc
Q psy13054 260 LKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFE--RSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQL 337 (1128)
Q Consensus 260 l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~--~~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~l 337 (1128)
+.|..+. ++|+|.||+.++++..++++ +++.++..+ ...+...|+..++++++++.+|||+. +..|+++
T Consensus 252 LaGKtVv--ViGyG~IGr~vA~~aka~Ga---~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~----tTGt~~v 322 (477)
T PLN02494 252 IAGKVAV--ICGYGDVGKGCAAAMKAAGA---RVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVT----TTGNKDI 322 (477)
T ss_pred cCCCEEE--EECCCHHHHHHHHHHHHCCC---EEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEE----CCCCccc
Confidence 4565544 88999999999998766654 344444322 22344557777899999999999997 6789999
Q ss_pred cCHHHHhcCCCCcEEEEecC-CCccCHHHHHHH--HHcCCeeEEEEecCCCC
Q psy13054 338 IGRKQFSLMKPTAILINTSR-GGLLDQEALVEF--LKDKKIGGAGLDVMIPE 386 (1128)
Q Consensus 338 In~~~l~~MK~gaiLINtaR-G~lVDe~AL~~A--L~sG~IagAaLDVfe~E 386 (1128)
|+++.|++||+|++|||+|| |..||+++|.++ ++.+.+. +++|+|+.|
T Consensus 323 I~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~ 373 (477)
T PLN02494 323 IMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP 373 (477)
T ss_pred hHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC
Confidence 99999999999999999999 689999999998 9999997 999999985
No 64
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=98.99 E-value=5.9e-10 Score=115.58 Aligned_cols=114 Identities=21% Similarity=0.324 Sum_probs=90.6
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChHhhhccCCEEEEecCCCccccccc-CHHHH
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLI-GRKQF 1033 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li-~~~~l 1033 (1128)
++|||||+|.||+.+|++|...|.+|.+||+...+.. ..+.+++.+ ++.|+++++|+|++++|..++++.++ +.+.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 5899999999999999999999999999997766554 455576654 89999999999999999999988876 33378
Q ss_pred ccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEec
Q psy13054 1034 SLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDV 1072 (1128)
Q Consensus 1034 ~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV 1072 (1128)
+.+++|.++||++....-+...+.+.+++..+.. +|.
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~--vda 118 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVRY--VDA 118 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEE--EEE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhcccee--eee
Confidence 8999999999999999999999999998766543 454
No 65
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=98.92 E-value=2.5e-09 Score=119.49 Aligned_cols=111 Identities=21% Similarity=0.201 Sum_probs=99.6
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCc-hh-hhhcCCccc-ChHhhhccCCEEEEecCCCcccccccC--HH
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK-EE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIG--RK 1031 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~-~~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~--~~ 1031 (1128)
.+||+||+|.||.++|++|..-|..|.+||+...+ .+ ....|.... +..|+.+++|+|++|+|..++.+.++- ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 47999999999999999999999999999988877 33 455677765 678999999999999999999999874 57
Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE
Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128)
.++.||+|+++|++|..+......+.+.++++.+..
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~ 116 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEF 116 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcE
Confidence 999999999999999999999999999999987655
No 66
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=98.87 E-value=5.1e-09 Score=118.54 Aligned_cols=109 Identities=22% Similarity=0.245 Sum_probs=91.5
Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc-cChHhhhccCCEEEEecCCCccccccc-C-HHHH
Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLI-G-RKQF 1033 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li-~-~~~l 1033 (1128)
+|||||+|.||+.+|+.|...|++|++||++..+.. ..+.|... .+.++++++||+|++|+|.++.++.++ + ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 589999999999999999999999999987765444 34455543 478899999999999999988888775 3 3467
Q ss_pred ccCCCCcEEEEcCCCcccCHHHHHHHHhcCCce
Q psy13054 1034 SLMKPTAILVNTSRGGLLDQEALVEFLKDKKIG 1066 (1128)
Q Consensus 1034 ~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ 1066 (1128)
..+++++++||+++....+.+++.+.++++.+.
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~ 113 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGID 113 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 889999999999999999999999999886544
No 67
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=98.87 E-value=4.3e-09 Score=120.19 Aligned_cols=122 Identities=20% Similarity=0.190 Sum_probs=92.0
Q ss_pred ccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcCCcccChHhhhccCCEEEEecCCCccccccc
Q psy13054 951 IMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLI 1028 (1128)
Q Consensus 951 ~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li 1028 (1128)
...+.|++|||||+|+||+++|+.|+.+|++|++++++..+.. +.+.|+...+.++++++||+|++++|.+.. ..++
T Consensus 12 ~~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~-~~V~ 90 (330)
T PRK05479 12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQ-AEVY 90 (330)
T ss_pred hhhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence 3478999999999999999999999999999998876644432 445677777999999999999999997665 7788
Q ss_pred CHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCC
Q psy13054 1029 GRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADH 1082 (1128)
Q Consensus 1029 ~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~ 1082 (1128)
+++.+..|++|+++ -.+.|--+.. +. ..-+..+||+.-.|-.+.+
T Consensus 91 ~~~I~~~Lk~g~iL-~~a~G~~i~~--~~------~~p~~~~~Vi~vaPn~Pg~ 135 (330)
T PRK05479 91 EEEIEPNLKEGAAL-AFAHGFNIHF--GQ------IVPPADVDVIMVAPKGPGH 135 (330)
T ss_pred HHHHHhcCCCCCEE-EECCCCChhh--ce------eccCCCCcEEEeCCCCCch
Confidence 77888999999988 5555522211 11 0013346788777755444
No 68
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.85 E-value=6.2e-09 Score=121.96 Aligned_cols=143 Identities=15% Similarity=0.120 Sum_probs=102.8
Q ss_pred eeCCCCCCCCccccccCCccccceeecc--cccccccccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcC
Q psy13054 269 FLGPKKNGSQNPKWRMGSKTDTNHYFGY--NWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLM 346 (1128)
Q Consensus 269 ilG~g~iG~~va~~~~g~~~~~~~~~g~--~~~~~~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~M 346 (1128)
++|+|.||+.+++...++++ +++.+ ++.....+...|++.++++|+++.+|+|+.. ..+.++|+.+.|+.|
T Consensus 200 ViG~G~IG~~vA~~ak~~Ga---~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVIta----TG~~~vI~~~~~~~m 272 (406)
T TIGR00936 200 VAGYGWCGKGIAMRARGMGA---RVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITA----TGNKDVIRGEHFENM 272 (406)
T ss_pred EECCCHHHHHHHHHHhhCcC---EEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEEEC----CCCHHHHHHHHHhcC
Confidence 67888888777776554432 33344 3322223344577778999999999999764 358999999999999
Q ss_pred CCCcEEEEecCCCc-cCHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCC-----CCCCCCcccccccCCCCChhhh
Q psy13054 347 KPTAILINTSRGGL-LDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLD-----NCGGAGLDVMIPEPLPADHPLV 420 (1128)
Q Consensus 347 K~gaiLINtaRG~l-VDe~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lp-----Nvg~~~~~v~tph~~~~t~~~~ 420 (1128)
|+|++|+|+||+.+ ||.++|.+++.+.+..+..+|+|.- |.+++++-+. |.+. -++|+.....-.+
T Consensus 273 K~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~---~~g~~i~ll~~GrlvNl~~-----~~ghp~~vmd~sf 344 (406)
T TIGR00936 273 KDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL---KDGRRIYLLAEGRLVNLAA-----AEGHPSEVMDMSF 344 (406)
T ss_pred CCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe---CCCCEEEEEeCCceecccC-----CCCCcceeeCHHH
Confidence 99999999999999 9999999999998888999999984 4455655433 3321 2457766544445
Q ss_pred HHHHHH
Q psy13054 421 QLDNCE 426 (1128)
Q Consensus 421 ~~~n~~ 426 (1128)
+.|.+.
T Consensus 345 a~q~la 350 (406)
T TIGR00936 345 ANQALA 350 (406)
T ss_pred HHHHHH
Confidence 555543
No 69
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=98.84 E-value=6.2e-09 Score=118.04 Aligned_cols=111 Identities=21% Similarity=0.240 Sum_probs=93.2
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChHhhhccCCEEEEecCCCcccccccC--HHH
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIG--RKQ 1032 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~--~~~ 1032 (1128)
++|||||+|.||+.+|+.+...|.+|++||++..+.. ..+.+...+ ++++++++||+|++|+|.++.++.++. ...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 4799999999999999999999999999987665543 344565544 789999999999999999888888763 346
Q ss_pred HccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE
Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128)
Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128)
+..+++|.++||+++..+...+++.+.+++..+..
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~ 117 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEM 117 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcE
Confidence 78899999999999999988899999998765544
No 70
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.83 E-value=9.3e-09 Score=120.89 Aligned_cols=102 Identities=21% Similarity=0.320 Sum_probs=88.3
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
.+.|++|+|+|+|.||+.+|+.++++|++|+++|..+.+.. +...|+..+++++.++.+|+|+.+.. +.++++.+
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~atG----~~~~i~~~ 274 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTTG----NKDIITGE 274 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECCC----CHHHHHHH
Confidence 47899999999999999999999999999999987766654 66778877788899999999997643 45688988
Q ss_pred HHccCCCCcEEEEcCCCcc-cCHHHHHH
Q psy13054 1032 QFSLMKPTAILVNTSRGGL-LDQEALVE 1058 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~l-Vde~aL~~ 1058 (1128)
.|+.||+|++++|+|++.+ +|..+|..
T Consensus 275 ~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 275 HFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred HHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 9999999999999999886 78888764
No 71
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.78 E-value=2.1e-08 Score=114.19 Aligned_cols=111 Identities=23% Similarity=0.348 Sum_probs=94.0
Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChHhhhcc---CCEEEEecCCCcccccccCHHH
Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLDTLCAE---SDFIFVTCALTKDTEQLIGRKQ 1032 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~ell~~---sDvV~l~lPlt~~T~~li~~~~ 1032 (1128)
+|||||+|+||+.+|+.|...|.+|++||++.++.+ ..+.|.... +.++++++ +|+|++|+|..+.++.+++ +.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~-~i 80 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK-DL 80 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH-HH
Confidence 699999999999999999999999999997765544 445566544 78888876 6999999998888888884 67
Q ss_pred HccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEe
Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLD 1071 (1128)
Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLD 1071 (1128)
+..+++|.++||+++....+...+.+.+++..+.. +|
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~--vd 117 (299)
T PRK12490 81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHY--VD 117 (299)
T ss_pred hccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeE--Ee
Confidence 78899999999999999999999999998876543 56
No 72
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=98.77 E-value=1.7e-08 Score=114.66 Aligned_cols=114 Identities=16% Similarity=0.175 Sum_probs=95.6
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc-cChHhhhccCCEEEEecCCCcccccccC--HHH
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIG--RKQ 1032 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li~--~~~ 1032 (1128)
++|||||+|.||..+|+.|...|.+|.+||++..+.. ..+.+... .+..+++++||+|++|+|....++.++. ...
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 3799999999999999999999999999998766554 34455544 4788999999999999998887887764 346
Q ss_pred HccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEec
Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDV 1072 (1128)
Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV 1072 (1128)
+..+++|.++||++++.+...+.+.+.+.+..+.. +|.
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~--lda 119 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSM--MDV 119 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcE--EEc
Confidence 77899999999999999999999999999887653 554
No 73
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.70 E-value=6.3e-08 Score=110.05 Aligned_cols=169 Identities=18% Similarity=0.166 Sum_probs=113.1
Q ss_pred HhcCCceEEEeCCC----------------CCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecCCC----
Q psy13054 76 EKLKGCSALLCNPH----------------QKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPV---- 135 (1128)
Q Consensus 76 ~~l~~adaIi~~~~----------------~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~---- 135 (1128)
+.++++|+|+.-.. ..++++.++.+ +++..+. .|.+.+++| +.|++|||.|.+.+..
T Consensus 51 ~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l-~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~ 127 (296)
T PRK08306 51 EALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELT-PEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVA 127 (296)
T ss_pred HHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhc-CCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhh
Confidence 45688999986311 12478999987 5666443 599999999 8899999999988865
Q ss_pred --CchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeee
Q psy13054 136 --SSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLL 213 (1128)
Q Consensus 136 --~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~gi 213 (1128)
|+.++||.++.+.+... . .. ..+++++|
T Consensus 128 ~~ns~~~aegav~~a~~~~---~----------------------------~~-------------------l~g~kvlV 157 (296)
T PRK08306 128 ILNSIPTAEGAIMMAIEHT---P----------------------------IT-------------------IHGSNVLV 157 (296)
T ss_pred hhccHhHHHHHHHHHHHhC---C----------------------------CC-------------------CCCCEEEE
Confidence 88899999776543210 0 00 12466777
Q ss_pred eeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCcccccee
Q psy13054 214 ISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHY 293 (1128)
Q Consensus 214 iGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~ 293 (1128)
+|.|. +|+.+++.+++++..+
T Consensus 158 iG~G~---------------------------------iG~~~a~~L~~~Ga~V-------------------------- 178 (296)
T PRK08306 158 LGFGR---------------------------------TGMTLARTLKALGANV-------------------------- 178 (296)
T ss_pred ECCcH---------------------------------HHHHHHHHHHHCCCEE--------------------------
Confidence 77752 4566666666554321
Q ss_pred eccccc--ccccccccCCccc---CHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEec--CCCccC
Q psy13054 294 FGYNWF--ERSNGTALGAQLV---PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS--RGGLLD 362 (1128)
Q Consensus 294 ~g~~~~--~~~~~~~~g~~~v---sLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINta--RG~lVD 362 (1128)
..+++. .......+|++.+ ++.+.++++|+|+.++|. ++++++.++.||+++++|+++ .|+ +|
T Consensus 179 ~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~~pgg-td 248 (296)
T PRK08306 179 TVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLASKPGG-TD 248 (296)
T ss_pred EEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEccCCCC-cC
Confidence 112211 1111223455544 567789999999999884 689999999999999999997 444 54
No 74
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.65 E-value=8.1e-08 Score=109.42 Aligned_cols=112 Identities=23% Similarity=0.291 Sum_probs=95.0
Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChHhhhcc---CCEEEEecCCCcccccccCHHH
Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLDTLCAE---SDFIFVTCALTKDTEQLIGRKQ 1032 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~ell~~---sDvV~l~lPlt~~T~~li~~~~ 1032 (1128)
+|||||+|.||+++|+.|...|.+|.+||++..+.. ..+.|+... +++++++. +|+|++++|..+.++.+++ ..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~-~l 80 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATID-EL 80 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHH-HH
Confidence 699999999999999999999999999998766544 445676655 78888876 6999999998878888874 67
Q ss_pred HccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEec
Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDV 1072 (1128)
Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV 1072 (1128)
+..+++|.++|+++++.......+.+.+++..+.. +|.
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~--~da 118 (301)
T PRK09599 81 APLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHF--VDV 118 (301)
T ss_pred HhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEE--EeC
Confidence 78899999999999999999999999998887654 464
No 75
>PLN02256 arogenate dehydrogenase
Probab=98.64 E-value=2.4e-07 Score=105.66 Aligned_cols=108 Identities=19% Similarity=0.327 Sum_probs=84.1
Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcc-cChHhhh-ccCCEEEEecCCCcccccccCHH
Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQL-VPLDTLC-AESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~-~~l~ell-~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
-.+++|||||+|.||+.+|+.++..|.+|++|+++.....+...|+.. .++++++ .++|+|++|+|. ..+..++.+-
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl~~l 112 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVLRSL 112 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHHHhh
Confidence 467899999999999999999999999999999775332244556644 3677776 479999999994 4677777543
Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhc
Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128)
....+++++++++++..+-+..+++.+.+..
T Consensus 113 ~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~ 143 (304)
T PLN02256 113 PLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE 143 (304)
T ss_pred hhhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence 3567899999999999776666677776654
No 76
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=98.53 E-value=2e-07 Score=112.18 Aligned_cols=119 Identities=14% Similarity=0.168 Sum_probs=99.8
Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhh----cCCc----ccChHhhhcc---CCEEEEecCCCcccc
Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTA----LGAQ----LVPLDTLCAE---SDFIFVTCALTKDTE 1025 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~----~g~~----~~~l~ell~~---sDvV~l~lPlt~~T~ 1025 (1128)
+||+||+|.||+.+|++|..-|.+|.+||+..++.+ ..+ .|.. ..+++|+.+. +|+|++|+|..+.++
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~ 87 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD 87 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence 699999999999999999999999999998776654 222 1432 3478888876 999999999999999
Q ss_pred cccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCC
Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEP 1077 (1128)
Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EP 1077 (1128)
.++ ...+..+++|.++|+++....-+...+.+.+++..+.....=|.-.++
T Consensus 88 ~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~ 138 (493)
T PLN02350 88 QTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE 138 (493)
T ss_pred HHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence 998 478899999999999999999999999999999888765555555544
No 77
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.52 E-value=2.6e-07 Score=103.76 Aligned_cols=111 Identities=20% Similarity=0.331 Sum_probs=92.7
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
-+.||++.|.|||.+|+-+|.+++++|++|++..-.+-+.. +.-.|++..++++..+.+||++.+.- ++++|..+
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~TG----nkdVi~~e 281 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTATG----NKDVIRKE 281 (420)
T ss_pred eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEccC----CcCccCHH
Confidence 48999999999999999999999999999999876665554 56678888999999999999997654 66899999
Q ss_pred HHccCCCCcEEEEcCCCcc-cCHHHHHHH-HhcCCceE
Q psy13054 1032 QFSLMKPTAILVNTSRGGL-LDQEALVEF-LKDKKIGG 1067 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~l-Vde~aL~~a-L~~g~i~g 1067 (1128)
.|..||+|+++-|.|.-.+ ||..+|.+. ++...+..
T Consensus 282 h~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr~ 319 (420)
T COG0499 282 HFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVRP 319 (420)
T ss_pred HHHhccCCeEEecccccceeccHHHHHHhhhhHhcccc
Confidence 9999999999999998887 676666533 34444444
No 78
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=98.52 E-value=2.5e-07 Score=105.02 Aligned_cols=113 Identities=21% Similarity=0.190 Sum_probs=92.2
Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCccc-ChHhhhccCCEEEEecCCCcccccccCH--HHHc
Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGR--KQFS 1034 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~--~~l~ 1034 (1128)
+|||||+|+||..+|+.|...|.+|.+||+........+.|...+ +..+++++||+|++++|..+..+.++.. ..++
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~ 81 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTK 81 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhc
Confidence 699999999999999999999999999987654322444566543 7889999999999999988888877632 3677
Q ss_pred cCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEec
Q psy13054 1035 LMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDV 1072 (1128)
Q Consensus 1035 ~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV 1072 (1128)
.+++|.++|+++....-....+.+.+++..+. .+|.
T Consensus 82 ~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vda 117 (292)
T PRK15059 82 ASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLDA 117 (292)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEEe
Confidence 88999999999999999999999998887554 3553
No 79
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.47 E-value=3e-07 Score=105.13 Aligned_cols=96 Identities=21% Similarity=0.228 Sum_probs=75.3
Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCch-h-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE-E-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~-~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
|.||+|||||+|+||+++|+.|+.+|++|++++++..+. . +.+.|+...+..+++++||+|++++|.... ...+.++
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp~~~-~~~v~~e 79 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPDEVQ-HEVYEAE 79 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCcHhH-HHHHHHH
Confidence 578999999999999999999999999988776554322 2 345677767888999999999999995433 3445566
Q ss_pred HHccCCCCcEEEEcCCCccc
Q psy13054 1032 QFSLMKPTAILVNTSRGGLL 1051 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lV 1051 (1128)
....|+++. +|.++.|--+
T Consensus 80 i~~~l~~g~-iVs~aaG~~i 98 (314)
T TIGR00465 80 IQPLLKEGK-TLGFSHGFNI 98 (314)
T ss_pred HHhhCCCCc-EEEEeCCccH
Confidence 778888886 8888888654
No 80
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.44 E-value=1.4e-07 Score=110.12 Aligned_cols=97 Identities=23% Similarity=0.211 Sum_probs=75.8
Q ss_pred cccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCC------CCch-hhhhcCCcccChHhhhccCCEEEEecCCCccc
Q psy13054 952 MGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR------RVKE-EGTALGAQLVPLDTLCAESDFIFVTCALTKDT 1024 (1128)
Q Consensus 952 ~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~------~~~~-~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T 1024 (1128)
..|.||||+|||+|.+|++-|..|+..|.+|++--+. ...- .+.+.|++..+++|++++||+|++.+|++ +
T Consensus 32 ~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPDt-~- 109 (487)
T PRK05225 32 SYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDK-Q- 109 (487)
T ss_pred HHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCChH-H-
Confidence 4799999999999999998888888888887633222 1121 14446777789999999999999999999 4
Q ss_pred ccccCHHHHccCCCCcEEEEcCCCccc
Q psy13054 1025 EQLIGRKQFSLMKPTAILVNTSRGGLL 1051 (1128)
Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~aRG~lV 1051 (1128)
++.+.++.+..||+|++|. -|.|=.|
T Consensus 110 q~~v~~~i~p~LK~Ga~L~-fsHGFni 135 (487)
T PRK05225 110 HSDVVRAVQPLMKQGAALG-YSHGFNI 135 (487)
T ss_pred HHHHHHHHHhhCCCCCEEE-ecCCcee
Confidence 7778899999999999985 3455443
No 81
>KOG0409|consensus
Probab=98.43 E-value=6.1e-07 Score=99.21 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=100.5
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChHhhhccCCEEEEecCCCccccccc--
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLI-- 1028 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li-- 1028 (1128)
....++||+||+|.||..++..|-..|.+|++||++.++.. ..+.|.+.. +..|+.+.||+|+.++|.....+.++
T Consensus 32 ~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g 111 (327)
T KOG0409|consen 32 TPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLG 111 (327)
T ss_pred CcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcC
Confidence 45688999999999999999999999999999998888876 677787765 89999999999999999999999887
Q ss_pred CHHHHccCCCCcEE-EEcCCCcccCHHHHHHHHhcCCceE
Q psy13054 1029 GRKQFSLMKPTAIL-VNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128)
Q Consensus 1029 ~~~~l~~mk~ga~l-IN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128)
+...|+..++|... |+++.-+.--...|.++++......
T Consensus 112 ~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~ 151 (327)
T KOG0409|consen 112 KSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRF 151 (327)
T ss_pred CCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeE
Confidence 33578888888888 9999999988899999998875433
No 82
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.41 E-value=4.6e-07 Score=102.54 Aligned_cols=91 Identities=20% Similarity=0.202 Sum_probs=67.8
Q ss_pred CCCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCcccc-----CchhhhHHHHHhhc-------CCChhhhhhhhH
Q psy13054 697 MGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-----GQLFSLVYDFCRYS-------IGGVTIKRLVKK 764 (1128)
Q Consensus 697 ~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~~~~-----~~~~~~~~~la~~~-------pg~~~t~~l~~~ 764 (1128)
..|+||||||||+|+||+++|++|++|||+|++|+++.+..+ +....-+.+++++| |- ++|+++++.
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd-~~t~~V~~~ 90 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPD-EQQAHVYKA 90 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCC-hHHHHHHHH
Confidence 458999999999999999999999999999999976432211 22122388888888 85 888999999
Q ss_pred HHHHHhc-ceEEee-eee--cccCCCcc
Q psy13054 765 TFILSFG-GLVVTV-LHV--HIGDLPAE 788 (1128)
Q Consensus 765 ~~l~~~~-~~~~~~-~~~--~~~~~~~~ 788 (1128)
+++..++ +.++.- |.. |.+.|-|+
T Consensus 91 eil~~MK~GaiL~f~hgfni~~~~i~pp 118 (335)
T PRK13403 91 EVEENLREGQMLLFSHGFNIHFGQINPP 118 (335)
T ss_pred HHHhcCCCCCEEEECCCcceecCceeCC
Confidence 9999986 334433 333 66665543
No 83
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.40 E-value=3.4e-07 Score=93.73 Aligned_cols=94 Identities=21% Similarity=0.249 Sum_probs=69.6
Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
|.+|+|+|||||.-|++.|..|+.-|++|++-.+...+.. +++.|++..+.+|..++||+|.+.+|.. .-..++.++
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD~-~q~~vy~~~ 80 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPDE-VQPEVYEEE 80 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-HH-HHHHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCChH-HHHHHHHHH
Confidence 6799999999999999999999999999988776555332 7788999999999999999999999943 333466788
Q ss_pred HHccCCCCcEEEEcCCCc
Q psy13054 1032 QFSLMKPTAILVNTSRGG 1049 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~ 1049 (1128)
....||+|+.|+= +.|-
T Consensus 81 I~p~l~~G~~L~f-ahGf 97 (165)
T PF07991_consen 81 IAPNLKPGATLVF-AHGF 97 (165)
T ss_dssp HHHHS-TT-EEEE-SSSH
T ss_pred HHhhCCCCCEEEe-CCcc
Confidence 8889999998763 4444
No 84
>PLN02858 fructose-bisphosphate aldolase
Probab=98.39 E-value=7.2e-07 Score=119.14 Aligned_cols=118 Identities=16% Similarity=0.128 Sum_probs=99.3
Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChHhhhccCCEEEEecCCCccccccc--CH
Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLI--GR 1030 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li--~~ 1030 (1128)
..++||+||+|.||..+|++|..-|.+|.+||++..+.+ ..+.|+..+ +..|+.++||+|++|+|..+.++.++ ..
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 357899999999999999999999999999998766655 555677654 89999999999999999999999887 34
Q ss_pred HHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEec
Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDV 1072 (1128)
Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV 1072 (1128)
..++.+++|.++|++|....-....+.+.+++..-...-+|.
T Consensus 83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa 124 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA 124 (1378)
T ss_pred hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 678889999999999999999999999999876511223664
No 85
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=98.37 E-value=1.4e-06 Score=99.12 Aligned_cols=108 Identities=15% Similarity=0.179 Sum_probs=88.1
Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc-cChHhh---hccCCEEEEecCCCcccccccCHHH
Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL-VPLDTL---CAESDFIFVTCALTKDTEQLIGRKQ 1032 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~-~~l~el---l~~sDvV~l~lPlt~~T~~li~~~~ 1032 (1128)
+|||||+|.||..+|+.|...|.+|.+||++..+.+ ..+.+... .+++++ +.++|+|++++|.. .++.+++ +.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~~-~l 79 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVLE-EL 79 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHHH-HH
Confidence 699999999999999999999999999987766544 33444432 355554 45789999999977 8888884 67
Q ss_pred HccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE
Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128)
Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128)
...+++|.++|+++.+...+...+.+.+++..+..
T Consensus 80 ~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~ 114 (298)
T TIGR00872 80 APTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHL 114 (298)
T ss_pred HhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeE
Confidence 78889999999999999999999999998876643
No 86
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=98.34 E-value=8.9e-07 Score=100.30 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=88.9
Q ss_pred EEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChHhhhccCCEEEEecCCCcccccccC--HHHHccC
Q psy13054 961 IVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIG--RKQFSLM 1036 (1128)
Q Consensus 961 IIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~--~~~l~~m 1036 (1128)
|||+|.||.++|+.|...|.+|.+||++..+.. ..+.|.... ++.+++++||+|++|+|..+.++.++. ...+..+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 689999999999999999999999997766544 445566544 789999999999999998788887762 4567789
Q ss_pred CCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEe
Q psy13054 1037 KPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLD 1071 (1128)
Q Consensus 1037 k~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLD 1071 (1128)
++|.++||++...+-....+.+.+++..+.. +|
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~~--vd 113 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAVF--MD 113 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCcE--EE
Confidence 9999999999888777788888887765543 55
No 87
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.32 E-value=3.1e-06 Score=96.16 Aligned_cols=103 Identities=24% Similarity=0.229 Sum_probs=78.1
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh------------hhhcC-------------CcccChHhhhccC
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE------------GTALG-------------AQLVPLDTLCAES 1011 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~------------~~~~g-------------~~~~~l~ell~~s 1011 (1128)
++|||||+|.||..+|+.+...|++|++||++....+ ..+.| ....+-.+.++.|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 6899999999999999999999999999997765432 01111 1223333568999
Q ss_pred CEEEEecCCCcccccccCHHHHccCCCCcEEE-EcCCCcccCHHHHHHHHhc
Q psy13054 1012 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILV-NTSRGGLLDQEALVEFLKD 1062 (1128)
Q Consensus 1012 DvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~lVde~aL~~aL~~ 1062 (1128)
|+|+.|+|..++.+..+-++..+.++++++++ |+|.-. ...+.+.++.
T Consensus 85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~~ 133 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQR 133 (295)
T ss_pred CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcCC
Confidence 99999999999988877777777899999997 777664 4456666543
No 88
>PRK08655 prephenate dehydrogenase; Provisional
Probab=98.30 E-value=3.3e-06 Score=101.13 Aligned_cols=132 Identities=20% Similarity=0.313 Sum_probs=96.4
Q ss_pred CeEEEEE-cChhhHHHHHHHhhCCCEEEEEeCCCCch-h-hhhcCCccc-ChHhhhccCCEEEEecCCCcccccccCHHH
Q psy13054 957 ATVGIVG-LGNIGLETAKLLKAFKVSKILYTSRRVKE-E-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQ 1032 (1128)
Q Consensus 957 ktvGIIG-~G~IG~~vA~~l~afG~~Vi~~d~~~~~~-~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~~~ 1032 (1128)
++|+||| +|.||+.+|+.|+..|.+|.+|+++.... . +.+.|+... +.++.+.++|+|++++|. +.+..++ ++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~-~~~~~vl-~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPI-NVTEDVI-KEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCH-HHHHHHH-HHH
Confidence 3799998 99999999999999999999998765543 2 344566544 678899999999999995 4556666 456
Q ss_pred HccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCC-CCCccccCCCeEECCCC
Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLP-ADHPLVQLDNCVLTPHT 1096 (1128)
Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~-~~~pL~~~pNvilTPHi 1096 (1128)
...+++++++++++.......+++.+.+..+. .+...-|+. +..|++.-..+++||+-
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~------~~V~~HPmaGp~~~~~~g~~~il~p~~ 137 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEGV------EILPTHPMFGPRTPSLKGQVVILTPTE 137 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhcCCCC------EEEEcCCCCCCCCcccCCCEEEEecCC
Confidence 67789999999999876665666666654321 122223441 23467777889999976
No 89
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=98.28 E-value=1.7e-06 Score=104.07 Aligned_cols=118 Identities=16% Similarity=0.213 Sum_probs=97.0
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhc----CCc---ccChHhhhc---cCCEEEEecCCCcccc
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTAL----GAQ---LVPLDTLCA---ESDFIFVTCALTKDTE 1025 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~----g~~---~~~l~ell~---~sDvV~l~lPlt~~T~ 1025 (1128)
.+|||||+|.||..+|++|..-|.+|.+||++..+.+ ..+. |.. ..+++|+++ ++|+|++++|..+.++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 3799999999999999999999999999997776643 2221 422 347888886 5899999999999999
Q ss_pred cccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCC
Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIP 1075 (1128)
Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~ 1075 (1128)
.++ .+.+..+++|.++|+++.+..-|+..+.+.+++..+.....=|.-.
T Consensus 82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG 130 (470)
T PTZ00142 82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGG 130 (470)
T ss_pred HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCC
Confidence 998 4678889999999999999999999999999998877644334443
No 90
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.25 E-value=5.3e-06 Score=94.82 Aligned_cols=146 Identities=16% Similarity=0.181 Sum_probs=91.2
Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchh-hhhcCCc---ccChHhhhccCCEEEEecCCCcccccccC
Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEE-GTALGAQ---LVPLDTLCAESDFIFVTCALTKDTEQLIG 1029 (1128)
Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~-~~~~g~~---~~~l~ell~~sDvV~l~lPlt~~T~~li~ 1029 (1128)
.++|+|||+|.||..+|+.++..|. +|++||++..... ....|.. ..++++.++++|+|++++|.. .+..++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~- 83 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVA- 83 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHH-
Confidence 4689999999999999999998884 8999987655433 3344431 236788899999999999953 333343
Q ss_pred HHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEE-eccCCC---CCCCCCccccCCCeEECCCCCCCcHHHHH
Q psy13054 1030 RKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGL-DVMIPE---PLPADHPLVQLDNCVLTPHTSSATKAVRD 1105 (1128)
Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaL-DV~e~E---Pl~~~~pL~~~pNvilTPHiag~t~e~~~ 1105 (1128)
++....++++.++++++....--.+++.+.+.. .+...+. =++-.| |-....+|+.-.++++||+-++ +.+..+
T Consensus 84 ~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~-~~~~~~ 161 (307)
T PRK07502 84 AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGT-DPAAVA 161 (307)
T ss_pred HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCC-CHHHHH
Confidence 345567899999999977543222333333322 1111111 111111 1112236666678999997554 344443
No 91
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.24 E-value=5e-06 Score=89.37 Aligned_cols=109 Identities=20% Similarity=0.272 Sum_probs=85.6
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcCCcccChHhhhc-cCCEEEEecCCCcccccccC
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALGAQLVPLDTLCA-ESDFIFVTCALTKDTEQLIG 1029 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~~l~ell~-~sDvV~l~lPlt~~T~~li~ 1029 (1128)
++.||+++|+|+|++|+.+|+.|..+|++|+++|.+..+.. ....+.+.++.++++. ++|+++.|... ++|+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l~~~~~Dv~vp~A~~-----~~I~ 99 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEIYSVDADVFAPCALG-----GVIN 99 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhhccccCCEEEecccc-----cccC
Confidence 48999999999999999999999999999999987655433 2333666667778776 79999976663 5899
Q ss_pred HHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE
Q psy13054 1030 RKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128)
Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128)
++.++.|+ .-+++--+-+.+-| ..-.+.|++..|...
T Consensus 100 ~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~~ 136 (200)
T cd01075 100 DDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGILYA 136 (200)
T ss_pred HHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCEEe
Confidence 99999997 45788888887766 556677777776554
No 92
>PLN02712 arogenate dehydrogenase
Probab=98.24 E-value=1.6e-06 Score=108.43 Aligned_cols=109 Identities=18% Similarity=0.312 Sum_probs=81.7
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCccc-ChHhhh-ccCCEEEEecCCCcccccccCH
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLV-PLDTLC-AESDFIFVTCALTKDTEQLIGR 1030 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~-~l~ell-~~sDvV~l~lPlt~~T~~li~~ 1030 (1128)
.-+.++|||||+|.||+.+|+.++.+|++|++||++.....+.+.|+... ++++++ .++|+|++|+|. ..+..++..
T Consensus 49 ~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~ 127 (667)
T PLN02712 49 NTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKS 127 (667)
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHh
Confidence 34557899999999999999999999999999987643333555666543 678865 569999999994 578888876
Q ss_pred HHHccCCCCcEEEEcCCCcccCHHHHHHHHhc
Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128)
Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128)
-.+..|+++++++|++.-+..--+++.+.+..
T Consensus 128 l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~ 159 (667)
T PLN02712 128 LPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE 159 (667)
T ss_pred hhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC
Confidence 44567999999999976553323444555443
No 93
>KOG1370|consensus
Probab=98.24 E-value=2e-06 Score=94.34 Aligned_cols=93 Identities=23% Similarity=0.328 Sum_probs=80.5
Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHH
Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQ 1032 (1128)
Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~ 1032 (1128)
+.||.+.|-|||.+|+..|+.|++||++|++-.-.+-... +.-.|++.++++|+.++.||++.+. -.+.+|..+.
T Consensus 212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtT----Gc~dii~~~H 287 (434)
T KOG1370|consen 212 IAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTT----GCKDIITGEH 287 (434)
T ss_pred ecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhcCCEEEEcc----CCcchhhHHH
Confidence 6899999999999999999999999999987654444443 5567889999999999999999644 4678999999
Q ss_pred HccCCCCcEEEEcCCCcc
Q psy13054 1033 FSLMKPTAILVNTSRGGL 1050 (1128)
Q Consensus 1033 l~~mk~ga~lIN~aRG~l 1050 (1128)
|.+||+++++.|++.-.+
T Consensus 288 ~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 288 FDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred HHhCcCCcEEeccccccc
Confidence 999999999999998765
No 94
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.22 E-value=2.6e-06 Score=99.87 Aligned_cols=94 Identities=17% Similarity=0.338 Sum_probs=75.1
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-h-hhcCCc-------ccChHhhhccCCEEEEecCCC-c
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-G-TALGAQ-------LVPLDTLCAESDFIFVTCALT-K 1022 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~-~~~g~~-------~~~l~ell~~sDvV~l~lPlt-~ 1022 (1128)
.+.+++|.|||+|.+|+.+++.++++|++|.++|++..+.+ . ...+.. ..++.+.++++|+|+.+++.+ .
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 46788999999999999999999999999999987655433 1 122221 124678889999999998653 3
Q ss_pred ccccccCHHHHccCCCCcEEEEcC
Q psy13054 1023 DTEQLIGRKQFSLMKPTAILVNTS 1046 (1128)
Q Consensus 1023 ~T~~li~~~~l~~mk~ga~lIN~a 1046 (1128)
.+..+|+++.++.||+++++||++
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEe
Confidence 356689999999999999999997
No 95
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.21 E-value=5.5e-06 Score=98.77 Aligned_cols=135 Identities=16% Similarity=0.125 Sum_probs=94.4
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCc-----------------ccChHhhhccCCEEEEecC
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQ-----------------LVPLDTLCAESDFIFVTCA 1019 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~-----------------~~~l~ell~~sDvV~l~lP 1019 (1128)
.+|||||+|.||..+|..+.. |.+|++||....+.+....|.. ..+..+.+++||++++|+|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vp 85 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVP 85 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcC
Confidence 679999999999999999877 7999999988776552223322 2333457899999999999
Q ss_pred CC------ccccccc--CHHHHccCCCCcEEEEcCCCcccCHHHHHHHH-hc--CCceEEEE-eccCCCCCCCCCc---c
Q psy13054 1020 LT------KDTEQLI--GRKQFSLMKPTAILVNTSRGGLLDQEALVEFL-KD--KKIGGAGL-DVMIPEPLPADHP---L 1084 (1128)
Q Consensus 1020 lt------~~T~~li--~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL-~~--g~i~gaaL-DV~e~EPl~~~~p---L 1084 (1128)
.. ++...++ .....+.+++|.++|+.|.-.+-..+.+++.+ ++ |.-.+-.. =+|.|||+.+... +
T Consensus 86 tp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~ 165 (425)
T PRK15182 86 TPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRL 165 (425)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccc
Confidence 65 3345555 33566889999999999999999888765554 33 22111111 1467899876544 4
Q ss_pred ccCCCeEE
Q psy13054 1085 VQLDNCVL 1092 (1128)
Q Consensus 1085 ~~~pNvil 1092 (1128)
...|.++.
T Consensus 166 ~~~~riv~ 173 (425)
T PRK15182 166 TNIKKITS 173 (425)
T ss_pred cCCCeEEE
Confidence 45555643
No 96
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.20 E-value=5.6e-06 Score=98.57 Aligned_cols=146 Identities=18% Similarity=0.254 Sum_probs=96.6
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcc---cChHhhh---------------ccCCEEEEec
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQL---VPLDTLC---------------AESDFIFVTC 1018 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~---~~l~ell---------------~~sDvV~l~l 1018 (1128)
++|+|||+|.||..+|..|...|.+|++||....+.+....|... ..+++++ +.||+|++|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 689999999999999999999999999999776654432222211 2344443 3799999999
Q ss_pred CCC------ccccccc--CHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCce-------EEEEe---ccCCCCCCC
Q psy13054 1019 ALT------KDTEQLI--GRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIG-------GAGLD---VMIPEPLPA 1080 (1128)
Q Consensus 1019 Plt------~~T~~li--~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~-------gaaLD---V~e~EPl~~ 1080 (1128)
|.. ++...+. -......+++|+++|+.|.-.+-..+.+...+.+.... |.+.| ++.+|-+.+
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~~~~ 163 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVLP 163 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCCccCC
Confidence 964 2223332 13566778999999999998888888888777653211 11223 466666655
Q ss_pred CCccc---cCCCeEECCCCCCCcHHHHHHH
Q psy13054 1081 DHPLV---QLDNCVLTPHTSSATKAVRDEK 1107 (1128)
Q Consensus 1081 ~~pL~---~~pNvilTPHiag~t~e~~~~~ 1107 (1128)
.+.+. ..|.+ +||.+.++.+++
T Consensus 164 G~~~~~~~~~~~v-----vgG~~~~~~~~~ 188 (415)
T PRK11064 164 GQVMVELIKNDRV-----IGGMTPVCSARA 188 (415)
T ss_pred CChhhhhcCCCEE-----EEeCCHHHHHHH
Confidence 54443 33333 255566665544
No 97
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.17 E-value=4.2e-06 Score=100.69 Aligned_cols=110 Identities=17% Similarity=0.217 Sum_probs=90.2
Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhc---C--Ccc-cChHhhh---ccCCEEEEecCCCcccccc
Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTAL---G--AQL-VPLDTLC---AESDFIFVTCALTKDTEQL 1027 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~---g--~~~-~~l~ell---~~sDvV~l~lPlt~~T~~l 1027 (1128)
.|||||+|.||+.+|++|..-|.+|.+||++..+.+ ..+. + +.. .+++++. +++|+|++++|..+.+..+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 389999999999999999999999999998776554 2222 2 222 3677766 4699999999998888888
Q ss_pred cCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE
Q psy13054 1028 IGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128)
Q Consensus 1028 i~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128)
++ +.+..+++|.++|+++....-|+..+.+.+++..+...
T Consensus 81 i~-~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fv 120 (467)
T TIGR00873 81 IN-QLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFV 120 (467)
T ss_pred HH-HHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEE
Confidence 84 67788999999999999999999999999988877644
No 98
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.14 E-value=3.7e-06 Score=99.46 Aligned_cols=58 Identities=22% Similarity=0.288 Sum_probs=49.8
Q ss_pred cCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCc-cCHHHHHH
Q psy13054 307 LGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGL-LDQEALVE 368 (1128)
Q Consensus 307 ~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~l-VDe~AL~~ 368 (1128)
.|++..+++++++.+|+|+.++ .+.++|+.+.|+.||+|++++|+||... +|.++|.+
T Consensus 254 ~G~~v~~l~eal~~aDVVI~aT----G~~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 254 DGFRVMTMEEAAELGDIFVTAT----GNKDVITAEHMEAMKDGAILANIGHFDNEIDVAALEE 312 (425)
T ss_pred cCCEecCHHHHHhCCCEEEECC----CCHHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence 3666678999999999998753 6788999999999999999999999887 78888754
No 99
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.13 E-value=1.3e-05 Score=90.43 Aligned_cols=130 Identities=19% Similarity=0.202 Sum_probs=84.9
Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCc--ccChHhhhccCCEEEEecCCCcccccccCHHHHc
Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQ--LVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFS 1034 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~--~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~ 1034 (1128)
+|||||+|.||..+|..|+..|.+|.+||++....+ +.+.|.. ..+..+.++++|+|++++|.. .+..++ ++...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~-~~~~~~-~~l~~ 79 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIG-LLLPPS-EQLIP 79 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHH-HHHHHH-HHHHH
Confidence 699999999999999999999999999997654433 3334431 223335789999999999944 334444 45667
Q ss_pred cCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCC---------CCccccCCCeEECCCCCC
Q psy13054 1035 LMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPA---------DHPLVQLDNCVLTPHTSS 1098 (1128)
Q Consensus 1035 ~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~---------~~pL~~~pNvilTPHiag 1098 (1128)
.+++++++++++.-..- .++++....-.. +... |+.. ..-|+.-.++++||+-..
T Consensus 80 ~l~~~~ii~d~~Svk~~----~~~~~~~~~~~~--v~~H---Pm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~ 143 (279)
T PRK07417 80 ALPPEAIVTDVGSVKAP----IVEAWEKLHPRF--VGSH---PMAGTAESGVEAGQRGLFKNRPWVLTPTENT 143 (279)
T ss_pred hCCCCcEEEeCcchHHH----HHHHHHHhhCCc--eeeC---CcCCCCcchHHHhhHHHhCCCcEEEccCCCC
Confidence 78999999999876532 233332211111 1111 3211 112566788999998654
No 100
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.11 E-value=5.5e-06 Score=94.79 Aligned_cols=84 Identities=21% Similarity=0.300 Sum_probs=68.9
Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHc
Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFS 1034 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~ 1034 (1128)
.+++|||||+|.+|+++|++|...|.+|.+|+++.. .+++++++++|+|++++|. +..+.+++. ...
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-----------~~~~~~~~~advvi~~vp~-~~~~~v~~~-l~~ 69 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-----------LSLAAVLADADVIVSAVSM-KGVRPVAEQ-VQA 69 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-----------CCHHHHHhcCCEEEEECCh-HHHHHHHHH-HHH
Confidence 457899999999999999999999999999986532 3678899999999999997 578887743 222
Q ss_pred -cCCCCcEEEEcCCCccc
Q psy13054 1035 -LMKPTAILVNTSRGGLL 1051 (1128)
Q Consensus 1035 -~mk~ga~lIN~aRG~lV 1051 (1128)
.+++++++|++++|-..
T Consensus 70 ~~~~~~~ivi~~s~gi~~ 87 (308)
T PRK14619 70 LNLPPETIIVTATKGLDP 87 (308)
T ss_pred hcCCCCcEEEEeCCcccC
Confidence 47899999999885443
No 101
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.07 E-value=2.3e-05 Score=88.88 Aligned_cols=113 Identities=14% Similarity=0.165 Sum_probs=81.2
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hh-------hcC-----------------Ccc-cChHhhhcc
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GT-------ALG-----------------AQL-VPLDTLCAE 1010 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~-------~~g-----------------~~~-~~l~ell~~ 1010 (1128)
++|+|||.|.||..+|..+...|.+|++||.+....+ .. +.+ ++. .++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 5799999999999999999999999999997655433 11 011 122 367889999
Q ss_pred CCEEEEecCCCcccccccCHHHHccCCCCcEE-EEcCCCcccCHHHHHHHHhcCCceEEEEecc
Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL-VNTSRGGLLDQEALVEFLKDKKIGGAGLDVM 1073 (1128)
Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~l-IN~aRG~lVde~aL~~aL~~g~i~gaaLDV~ 1073 (1128)
||+|+.|+|...+.+..+=.+..+.+++++++ +|+|.-.+ ..+.+.++. .-...++..+
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~ 141 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF 141 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC
Confidence 99999999988776655444566778999877 78877544 556666543 2234455555
No 102
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.05 E-value=1.9e-05 Score=90.68 Aligned_cols=104 Identities=18% Similarity=0.204 Sum_probs=81.1
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hh-----------hcC---------Ccc-cChHhhhccCCEE
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GT-----------ALG---------AQL-VPLDTLCAESDFI 1014 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~-----------~~g---------~~~-~~l~ell~~sDvV 1014 (1128)
++|||||.|.||..+|..+...|++|++||+...... .. +.+ ++. .++++.++.||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 6899999999999999999999999999998754322 10 011 122 3788999999999
Q ss_pred EEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhc
Q psy13054 1015 FVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128)
Q Consensus 1015 ~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128)
+-++|.+.+.++-+-++.-+.++++++| .++..+ +...++.+.++.
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~aIl-aSnTS~-l~~s~la~~~~~ 133 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDAII-ASSTSG-LLPTDFYARATH 133 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCeEE-EECCCc-cCHHHHHHhcCC
Confidence 9999999999987778888999999944 444443 467778877754
No 103
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.04 E-value=1.1e-05 Score=91.20 Aligned_cols=79 Identities=23% Similarity=0.388 Sum_probs=67.7
Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
++.||+|+|||.| .+|+++|.+|..-|++|.+|+++.. ++.++.++||+|+++++.. +++.+.
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~------------~l~e~~~~ADIVIsavg~~----~~v~~~ 219 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST------------DAKALCRQADIVVAAVGRP----RLIDAD 219 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC------------CHHHHHhcCCEEEEecCCh----hcccHh
Confidence 6899999999996 9999999999999999999976542 6889999999999999965 356654
Q ss_pred HHccCCCCcEEEEcCCCcc
Q psy13054 1032 QFSLMKPTAILVNTSRGGL 1050 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~l 1050 (1128)
. +|+|+++|++|--.+
T Consensus 220 ~---ik~GaiVIDvgin~~ 235 (301)
T PRK14194 220 W---LKPGAVVIDVGINRI 235 (301)
T ss_pred h---ccCCcEEEEeccccc
Confidence 4 899999999986553
No 104
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.03 E-value=3.8e-05 Score=90.37 Aligned_cols=91 Identities=20% Similarity=0.236 Sum_probs=70.7
Q ss_pred CCCeEEEEE-cChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHH
Q psy13054 955 KGATVGIVG-LGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQF 1033 (1128)
Q Consensus 955 ~gktvGIIG-~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l 1033 (1128)
..++|+||| +|.||+.+|+.|+..|..|.+||+... .+.++++++||+|++|+|... +..++. + +
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-----------~~~~~~~~~aDlVilavP~~~-~~~~~~-~-l 162 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-----------DRAEDILADAGMVIVSVPIHL-TEEVIA-R-L 162 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-----------hhHHHHHhcCCEEEEeCcHHH-HHHHHH-H-H
Confidence 458899999 999999999999999999999985321 256788899999999999664 556663 3 4
Q ss_pred ccCCCCcEEEEcCCCcccCHHHHHHH
Q psy13054 1034 SLMKPTAILVNTSRGGLLDQEALVEF 1059 (1128)
Q Consensus 1034 ~~mk~ga~lIN~aRG~lVde~aL~~a 1059 (1128)
..+++|+++++++.-+..-.+++.+.
T Consensus 163 ~~l~~~~iv~Dv~SvK~~~~~~~~~~ 188 (374)
T PRK11199 163 PPLPEDCILVDLTSVKNAPLQAMLAA 188 (374)
T ss_pred hCCCCCcEEEECCCccHHHHHHHHHh
Confidence 44999999999987654334445444
No 105
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.02 E-value=1.2e-05 Score=90.17 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=86.9
Q ss_pred ccCCCeEEEEEcChh-hHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLGNI-GLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G~I-G~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
++.||++.|||.|.+ |+++|.+|...|++|.++..+. .++.+.+++||+|++++| +.++|+.
T Consensus 155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t------------~~l~~~~~~ADIVV~avG----~~~~i~~- 217 (285)
T PRK14189 155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT------------RDLAAHTRQADIVVAAVG----KRNVLTA- 217 (285)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC------------CCHHHHhhhCCEEEEcCC----CcCccCH-
Confidence 589999999999999 9999999999999998875432 268899999999999999 4578987
Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHH
Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~ 1111 (1128)
+.+|+|+++||+|--.+. +|++.| ||-.++- ..---.+||=-||.-.-+..-+.+-+
T Consensus 218 --~~ik~gavVIDVGin~~~----------~gkl~G---DVd~~~v--------~~~a~~iTPVPGGVGp~T~a~Ll~N~ 274 (285)
T PRK14189 218 --DMVKPGATVIDVGMNRDD----------AGKLCG---DVDFAGV--------KEVAGYITPVPGGVGPMTITMLLVNT 274 (285)
T ss_pred --HHcCCCCEEEEccccccC----------CCCeeC---CccHHHH--------HhhceEecCCCCCchHHHHHHHHHHH
Confidence 678999999999976542 255544 5521111 11124588876666555544443333
Q ss_pred H
Q psy13054 1112 A 1112 (1128)
Q Consensus 1112 ~ 1112 (1128)
+
T Consensus 275 ~ 275 (285)
T PRK14189 275 I 275 (285)
T ss_pred H
Confidence 3
No 106
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.02 E-value=3.3e-05 Score=86.29 Aligned_cols=101 Identities=20% Similarity=0.280 Sum_probs=76.7
Q ss_pred eEEEEEcChhhHHHHHHHhhCCC----EEEEE-eCCCCchh-hhhcCCccc-ChHhhhccCCEEEEecCCCcccccccCH
Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKV----SKILY-TSRRVKEE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGR 1030 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~----~Vi~~-d~~~~~~~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~ 1030 (1128)
+|||||+|+||.++++.|..-|. ++++| +++..+.. ..+.|+... +..+++++||+|++++| .+..+.++.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~- 79 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLT- 79 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHH-
Confidence 69999999999999999988887 88888 55444333 445676554 78889999999999997 666777763
Q ss_pred HHHccCCCCcEEEEcCCCcccCHHHHHHHHhc
Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128)
Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128)
+....++++.++|++.-| +..+.+.+.+..
T Consensus 80 ~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~ 109 (266)
T PLN02688 80 ELRPLLSKDKLLVSVAAG--ITLADLQEWAGG 109 (266)
T ss_pred HHHhhcCCCCEEEEecCC--CcHHHHHHHcCC
Confidence 455667899999988665 466677765543
No 107
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.01 E-value=2.7e-05 Score=91.16 Aligned_cols=134 Identities=25% Similarity=0.262 Sum_probs=90.1
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhc--CCc---ccChHhhhccCCEEEEecCCCcccccccCH
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTAL--GAQ---LVPLDTLCAESDFIFVTCALTKDTEQLIGR 1030 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~--g~~---~~~l~ell~~sDvV~l~lPlt~~T~~li~~ 1030 (1128)
++|+|||+|.||..+|+.|+..|..|.+|+....... .... ++. ..++++++++||+|++++|. +.+..++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-~~~~~vl~- 78 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-DATAALLA- 78 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-HHHHHHHH-
Confidence 4799999999999999999999998888886655433 2222 221 13678889999999999996 46677773
Q ss_pred HHHc-cCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCC---------CCccccCCCeEECCCCCC
Q psy13054 1031 KQFS-LMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPA---------DHPLVQLDNCVLTPHTSS 1098 (1128)
Q Consensus 1031 ~~l~-~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~---------~~pL~~~pNvilTPHiag 1098 (1128)
+... .+++++++.+++.-+.-..+++.+.+.. .... ++. -|++- ...|+.-...++||+-..
T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~-~~~~--ig~---HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~ 150 (359)
T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEALLGD-LIRF--VGG---HPMAGSHKSGVAAARADLFENAPWVLTPDDHT 150 (359)
T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHHhcCC-CCeE--Eee---CCcCcCchhhHHHhcHHHHCCCcEEEecCCCC
Confidence 3333 4789999999988875444444443222 1122 222 24432 234666677899997543
No 108
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.99 E-value=6.4e-06 Score=77.40 Aligned_cols=88 Identities=18% Similarity=0.312 Sum_probs=63.7
Q ss_pred eEEEEEcChhhHHHHHHHhhCC---CEEEEE-eCCCCchh--hhhcCCccc--ChHhhhccCCEEEEecCCCcccccccC
Q psy13054 958 TVGIVGLGNIGLETAKLLKAFK---VSKILY-TSRRVKEE--GTALGAQLV--PLDTLCAESDFIFVTCALTKDTEQLIG 1029 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG---~~Vi~~-d~~~~~~~--~~~~g~~~~--~l~ell~~sDvV~l~lPlt~~T~~li~ 1029 (1128)
||||||+|+||.++++.+...| .+|.++ +++..+.. ..+.++... +..+++++||+|++++|. .....++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p-~~~~~v~~ 79 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKP-QQLPEVLS 79 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-G-GGHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECH-HHHHHHHH
Confidence 6999999999999999999999 999855 65554443 345555433 789999999999999993 33344443
Q ss_pred HHHHccCCCCcEEEEcCCC
Q psy13054 1030 RKQFSLMKPTAILVNTSRG 1048 (1128)
Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG 1048 (1128)
+. ....++.++|.+.-|
T Consensus 80 -~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 80 -EI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp -HH-HHHHTTSEEEEESTT
T ss_pred -HH-hhccCCCEEEEeCCC
Confidence 22 666789999987643
No 109
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=97.96 E-value=4.3e-05 Score=86.15 Aligned_cols=143 Identities=27% Similarity=0.314 Sum_probs=98.2
Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh---hhhcCCcc---cC-hHhhhccCCEEEEecCCCccccccc
Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE---GTALGAQL---VP-LDTLCAESDFIFVTCALTKDTEQLI 1028 (1128)
Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~---~~~~g~~~---~~-l~ell~~sDvV~l~lPlt~~T~~li 1028 (1128)
-++|+|+|+|.||+.+|+.++.-|..|.+++....... +.+.|+.. .+ ..+.+..+|+|++++| -..|..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavP-i~~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVP-IEATEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEecc-HHHHHHHH
Confidence 36899999999999999999999998866654444332 33455533 12 3678888999999999 45666666
Q ss_pred CHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCC--C-CCCccccCCCeEECCCCCCCcHHHHH
Q psy13054 1029 GRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL--P-ADHPLVQLDNCVLTPHTSSATKAVRD 1105 (1128)
Q Consensus 1029 ~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl--~-~~~pL~~~pNvilTPHiag~t~e~~~ 1105 (1128)
. +.-..+|+|+++.+++.-+----+++.+.+.++. ... -.=|+ | .+.+++.--.+++||.-... .+...
T Consensus 82 ~-~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~v-----g~HPM~G~~~~~~lf~~~~~vltp~~~~~-~~~~~ 153 (279)
T COG0287 82 K-ELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFV-----GGHPMFGPEADAGLFENAVVVLTPSEGTE-KEWVE 153 (279)
T ss_pred H-HhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeE-----ecCCCCCCcccccccCCCEEEEcCCCCCC-HHHHH
Confidence 3 3444799999999999888766666666664432 221 22343 1 25577777889999985544 34443
Q ss_pred HH
Q psy13054 1106 EK 1107 (1128)
Q Consensus 1106 ~~ 1107 (1128)
++
T Consensus 154 ~~ 155 (279)
T COG0287 154 EV 155 (279)
T ss_pred HH
Confidence 33
No 110
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.95 E-value=7.4e-05 Score=84.71 Aligned_cols=139 Identities=13% Similarity=0.109 Sum_probs=92.1
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhh-------------------------cCCcc-cChHhhhc
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTA-------------------------LGAQL-VPLDTLCA 1009 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~-------------------------~g~~~-~~l~ell~ 1009 (1128)
++|+|||.|.+|..+|..+...|.+|++||......+ ..+ ..++. .++++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 5799999999999999999989999999997654322 110 01122 36888899
Q ss_pred cCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCC
Q psy13054 1010 ESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 1089 (1128)
Q Consensus 1010 ~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pN 1089 (1128)
.||+|+.++|...+.+.-+=++.-+.++++++++..+.+ .....+.+.++... ...++-. .+|.+..|.
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~~-r~vg~Hf--------~~p~~~~~l 152 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRPE-KFLALHF--------ANEIWKNNT 152 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCcc-cEEEEcC--------CCCCCcCCe
Confidence 999999999977655444334566678899988543333 34456777665322 3333322 234567788
Q ss_pred eEECCCCCCCcHHHHHHH
Q psy13054 1090 CVLTPHTSSATKAVRDEK 1107 (1128)
Q Consensus 1090 vilTPHiag~t~e~~~~~ 1107 (1128)
|.+.|+-.. ++++.+.+
T Consensus 153 vevv~~~~t-~~~~~~~~ 169 (287)
T PRK08293 153 AEIMGHPGT-DPEVFDTV 169 (287)
T ss_pred EEEeCCCCC-CHHHHHHH
Confidence 888887553 44444433
No 111
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.94 E-value=4.8e-05 Score=77.62 Aligned_cols=107 Identities=21% Similarity=0.296 Sum_probs=78.6
Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCC-CEEEEEeCCCCchh--hhhcCC-----cccChHhhhccCCEEEEecCCCcc-c
Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFK-VSKILYTSRRVKEE--GTALGA-----QLVPLDTLCAESDFIFVTCALTKD-T 1024 (1128)
Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG-~~Vi~~d~~~~~~~--~~~~g~-----~~~~l~ell~~sDvV~l~lPlt~~-T 1024 (1128)
+.+++++|+|.|.||+.+++.+...| .+|.++|++..+.. ....+. ...+++++++++|+|++++|.... .
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~ 96 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPG 96 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCC
Confidence 56889999999999999999999886 78889987655433 223232 334778889999999999997654 2
Q ss_pred cc-ccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCc
Q psy13054 1025 EQ-LIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKI 1065 (1128)
Q Consensus 1025 ~~-li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i 1065 (1128)
.. .+... .++++.++++++..... + .+.+.+++..+
T Consensus 97 ~~~~~~~~---~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g~ 133 (155)
T cd01065 97 DELPLPPS---LLKPGGVVYDVVYNPLE-T-PLLKEARALGA 133 (155)
T ss_pred CCCCCCHH---HcCCCCEEEEcCcCCCC-C-HHHHHHHHCCC
Confidence 22 23432 36899999999877544 3 77777776544
No 112
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.94 E-value=1.7e-05 Score=89.19 Aligned_cols=107 Identities=21% Similarity=0.268 Sum_probs=77.5
Q ss_pred CCCeEEEEEcChhhHHHHHHHhh--CCCEEE-EEeCCCCchh--hhhcCC--cccChHhhhccCCEEEEecCCCcccccc
Q psy13054 955 KGATVGIVGLGNIGLETAKLLKA--FKVSKI-LYTSRRVKEE--GTALGA--QLVPLDTLCAESDFIFVTCALTKDTEQL 1027 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~a--fG~~Vi-~~d~~~~~~~--~~~~g~--~~~~l~ell~~sDvV~l~lPlt~~T~~l 1027 (1128)
...+|||||+|.||+.+++.+.. .++++. ++|+...+.. ....+. .+.++++++.++|+|++|+|.. ++.-
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~--~h~e 82 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPAS--VLRA 82 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcH--HHHH
Confidence 45789999999999999999975 588876 4554443332 233443 2458999999999999999943 2222
Q ss_pred cCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCce
Q psy13054 1028 IGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIG 1066 (1128)
Q Consensus 1028 i~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ 1066 (1128)
+ ..+.++.|.-++..+.|.+.+.++|.++.+++...
T Consensus 83 ~---~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 83 I---VEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred H---HHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 2 23445667777788999998999999988876543
No 113
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=97.92 E-value=6.4e-05 Score=89.53 Aligned_cols=134 Identities=19% Similarity=0.173 Sum_probs=89.0
Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhh--------------------cC-Ccc-cChHhhhccCCEEE
Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTA--------------------LG-AQL-VPLDTLCAESDFIF 1015 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~--------------------~g-~~~-~~l~ell~~sDvV~ 1015 (1128)
+|||||+|.+|..+|..|...|.+|++||.+..+..... .| ++. .++++++++||+|+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advvi 81 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVII 81 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEEE
Confidence 699999999999999999999999999997765433111 12 232 26788899999999
Q ss_pred EecCCCccc------ccccC--HHHHccCCCCcEEEEcCCCcccCHHHHHHH-Hhc--CCceEEEEec---cCCCCCCCC
Q psy13054 1016 VTCALTKDT------EQLIG--RKQFSLMKPTAILVNTSRGGLLDQEALVEF-LKD--KKIGGAGLDV---MIPEPLPAD 1081 (1128)
Q Consensus 1016 l~lPlt~~T------~~li~--~~~l~~mk~ga~lIN~aRG~lVde~aL~~a-L~~--g~i~gaaLDV---~e~EPl~~~ 1081 (1128)
+++|..... ..+.. ....+.+++|.++|+.|.-.+=..+.+... +++ |.-. +.|. +-+|...+.
T Consensus 82 i~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~--~~d~~v~~~Pe~~~~G 159 (411)
T TIGR03026 82 ICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKL--GEDFYLAYNPEFLREG 159 (411)
T ss_pred EEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCC--CCCceEEECCCcCCCC
Confidence 999965431 11221 345567899999999987666666677644 444 2111 2332 345554443
Q ss_pred C---ccccCCCeEEC
Q psy13054 1082 H---PLVQLDNCVLT 1093 (1128)
Q Consensus 1082 ~---pL~~~pNvilT 1093 (1128)
. .++..+.+++.
T Consensus 160 ~~~~~~~~~~~iv~G 174 (411)
T TIGR03026 160 NAVHDLLNPDRIVGG 174 (411)
T ss_pred ChhhhhcCCCEEEEe
Confidence 3 34555677765
No 114
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.90 E-value=7e-05 Score=85.04 Aligned_cols=138 Identities=21% Similarity=0.228 Sum_probs=88.6
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhh-hh-----------cC-------------Cccc-ChHhhhcc
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG-TA-----------LG-------------AQLV-PLDTLCAE 1010 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~-~~-----------~g-------------~~~~-~l~ell~~ 1010 (1128)
++|+|||.|.||..+|..+...|.+|++||.+....+. .+ .+ ++.. +++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 67999999999999999999999999999976543321 10 12 2222 454 5789
Q ss_pred CCEEEEecCCCcccccccCHHHHccCCCCcEEE-EcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCC
Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILV-NTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 1089 (1128)
Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pN 1089 (1128)
||+|+.++|..++.+..+=++..+.++++++++ |+|.-. ...+.+.+... -...++-.+. |.+ -. +-
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~~~-~r~~g~h~~~--p~~-~~-----~~ 151 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATDRP-ERFIGIHFMN--PVP-VM-----KL 151 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCCc-ccEEEeeccC--Ccc-cC-----ce
Confidence 999999999887755544356677889999998 666544 34677766431 1233444454 322 12 22
Q ss_pred eEECCCCCCCcHHHHHHHH
Q psy13054 1090 CVLTPHTSSATKAVRDEKS 1108 (1128)
Q Consensus 1090 vilTPHiag~t~e~~~~~~ 1108 (1128)
+-+.|+.+ .+.+..++..
T Consensus 152 vei~~g~~-t~~~~~~~~~ 169 (292)
T PRK07530 152 VELIRGIA-TDEATFEAAK 169 (292)
T ss_pred EEEeCCCC-CCHHHHHHHH
Confidence 44566643 3445444433
No 115
>PRK08507 prephenate dehydrogenase; Validated
Probab=97.90 E-value=6.7e-05 Score=84.51 Aligned_cols=97 Identities=20% Similarity=0.366 Sum_probs=68.9
Q ss_pred eEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchh-hhhcCCc--ccChHhhhccCCEEEEecCCCcccccccCHHH
Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEE-GTALGAQ--LVPLDTLCAESDFIFVTCALTKDTEQLIGRKQ 1032 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~-~~~~g~~--~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~ 1032 (1128)
+|||||+|.||+.+|+.|+..|. +|++||++..... ..+.|+. ..+.+++. ++|+|++++|.. .+..++. +.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~-~~~~~~~-~l 78 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVD-AIIEILP-KL 78 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHH-HHHHHHH-HH
Confidence 69999999999999999987774 7888887655433 3445542 23677765 599999999954 4444553 44
Q ss_pred HccCCCCcEEEEcCCCcccCHHHHHHHHhc
Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128)
Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128)
.. +++++++++++.- ...+.+.+..
T Consensus 79 ~~-l~~~~iv~d~gs~----k~~i~~~~~~ 103 (275)
T PRK08507 79 LD-IKENTTIIDLGST----KAKIIESVPK 103 (275)
T ss_pred hc-cCCCCEEEECccc----hHHHHHHHHH
Confidence 55 8999999997552 3445555544
No 116
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.89 E-value=4.1e-05 Score=80.11 Aligned_cols=89 Identities=25% Similarity=0.344 Sum_probs=74.6
Q ss_pred ccCCCeEEEEEcChh-hHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLGNI-GLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G~I-G~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
.+.||++.|||.|.+ |+.+|+.|...|++|.+.+++. .++.+.++++|+|+.+.+.. ++|+++
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~------------~~l~~~l~~aDiVIsat~~~----~ii~~~ 104 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT------------KNLKEHTKQADIVIVAVGKP----GLVKGD 104 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc------------hhHHHHHhhCCEEEEcCCCC----ceecHH
Confidence 589999999999986 9999999999999988887542 25778999999999998854 378887
Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE
Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128)
. ++++.++|++|...-+| ..++++.|
T Consensus 105 ~---~~~~~viIDla~prdvd-------~~~~~~~G 130 (168)
T cd01080 105 M---VKPGAVVIDVGINRVPD-------KSGGKLVG 130 (168)
T ss_pred H---ccCCeEEEEccCCCccc-------ccCCCeeC
Confidence 5 57899999999999888 56666655
No 117
>PRK08818 prephenate dehydrogenase; Provisional
Probab=97.84 E-value=0.00011 Score=85.89 Aligned_cols=122 Identities=19% Similarity=0.240 Sum_probs=83.5
Q ss_pred CCCeEEEEEc-ChhhHHHHHHHhh-CCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCH--
Q psy13054 955 KGATVGIVGL-GNIGLETAKLLKA-FKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGR-- 1030 (1128)
Q Consensus 955 ~gktvGIIG~-G~IG~~vA~~l~a-fG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~-- 1030 (1128)
.-.||+|||+ |.||+.+|+.++. +|.+|++||+... ...++++.+++||+|++|+|- ..+..++.+
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~---------~~~~~~~~v~~aDlVilavPv-~~~~~~l~~l~ 72 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP---------GSLDPATLLQRADVLIFSAPI-RHTAALIEEYV 72 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc---------ccCCHHHHhcCCCEEEEeCCH-HHHHHHHHHHh
Confidence 4578999999 9999999999985 5999999986311 123678889999999999993 455555532
Q ss_pred HHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCC--CCCCccccCCCeEECCC
Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL--PADHPLVQLDNCVLTPH 1095 (1128)
Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl--~~~~pL~~~pNvilTPH 1095 (1128)
.....+|+++++.+++.-+---.+++ ++.+ . ++.-.=|+ |+.+.++.-.++++||.
T Consensus 73 ~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~-~-----~fVG~HPMaG~E~s~lf~g~~~iltp~ 130 (370)
T PRK08818 73 ALAGGRAAGQLWLDVTSIKQAPVAAM---LASQ-A-----EVVGLHPMTAPPKSPTLKGRVMVVCEA 130 (370)
T ss_pred hhhcCCCCCeEEEECCCCcHHHHHHH---HhcC-C-----CEEeeCCCCCCCCCcccCCCeEEEeCC
Confidence 11234799999999998773222222 2211 1 22223354 33456777778999997
No 118
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.84 E-value=4.2e-05 Score=86.60 Aligned_cols=79 Identities=20% Similarity=0.363 Sum_probs=66.9
Q ss_pred ccCCCeEEEEE-cChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVG-LGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG-~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
++.||+|+||| .|.+|+++|.+|..-|+.|.+|+.+.. ++++++++||+|+++++..+ ++.+.
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~------------~l~e~~~~ADIVIsavg~~~----~v~~~ 218 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR------------DLPAVCRRADILVAAVGRPE----MVKGD 218 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC------------CHHHHHhcCCEEEEecCChh----hcchh
Confidence 58999999999 999999999999999999999965442 47899999999999999654 45543
Q ss_pred HHccCCCCcEEEEcCCCcc
Q psy13054 1032 QFSLMKPTAILVNTSRGGL 1050 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~l 1050 (1128)
. +|+|+++|++|--.+
T Consensus 219 ~---lk~GavVIDvGin~~ 234 (296)
T PRK14188 219 W---IKPGATVIDVGINRI 234 (296)
T ss_pred e---ecCCCEEEEcCCccc
Confidence 3 899999999986553
No 119
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=97.82 E-value=8e-05 Score=95.15 Aligned_cols=135 Identities=20% Similarity=0.240 Sum_probs=93.6
Q ss_pred CeEEEEEcChhhHHHHHHHhhCC--CEEEEEeCCCCchh-hhhcCCc---ccChHhhhccCCEEEEecCCCcccccccCH
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFK--VSKILYTSRRVKEE-GTALGAQ---LVPLDTLCAESDFIFVTCALTKDTEQLIGR 1030 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG--~~Vi~~d~~~~~~~-~~~~g~~---~~~l~ell~~sDvV~l~lPlt~~T~~li~~ 1030 (1128)
++|||||+|.||..+++.++..| .+|++||++..+.. +.+.|+. ..+++++++++|+|++++|.. .+..++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl~- 81 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVLA- 81 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHHH-
Confidence 68999999999999999999888 58999987765543 4445553 346888899999999999953 4444442
Q ss_pred HHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCC---------CCCCccccCCCeEECCCCCC
Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL---------PADHPLVQLDNCVLTPHTSS 1098 (1128)
Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl---------~~~~pL~~~pNvilTPHiag 1098 (1128)
+.-..++++.++++++.-+....+++.+.+....+ .+.-+=|. ..+..|+.-.++++||+...
T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~-----r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~ 153 (735)
T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPA-----GFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET 153 (735)
T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCC-----eEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC
Confidence 33445688999999988664445556555543222 22223332 12346778888999997654
No 120
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.79 E-value=0.00017 Score=81.52 Aligned_cols=103 Identities=18% Similarity=0.232 Sum_probs=75.2
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh------------hhhcC-------------Cccc-ChHhhhcc
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE------------GTALG-------------AQLV-PLDTLCAE 1010 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~------------~~~~g-------------~~~~-~l~ell~~ 1010 (1128)
++|+|||.|.||..+|..+...|.+|++||.+....+ ..+.| ++.. +.+ .+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 5799999999999999999999999999997665431 11122 1222 444 4799
Q ss_pred CCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhc
Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128)
Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128)
||+|+.++|...+.+.-+=++.-+.++++++++....| +....|.+.++.
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~ 132 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR 132 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence 99999999987776644434566678999999555444 666688888854
No 121
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.79 E-value=0.00017 Score=87.11 Aligned_cols=94 Identities=20% Similarity=0.294 Sum_probs=74.5
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc--C--------------------------
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV--P-------------------------- 1003 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~--~-------------------------- 1003 (1128)
...+.++.|+|+|.+|...++.++++|++|+++|.+..+.+ ++..|.+.+ +
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 45678999999999999999999999999999998876554 445555431 1
Q ss_pred hHhhhccCCEEEEec--CCCcccccccCHHHHccCCCCcEEEEcCC
Q psy13054 1004 LDTLCAESDFIFVTC--ALTKDTEQLIGRKQFSLMKPTAILVNTSR 1047 (1128)
Q Consensus 1004 l~ell~~sDvV~l~l--Plt~~T~~li~~~~l~~mk~ga~lIN~aR 1047 (1128)
+.+.++++|+|+.++ |..+ .-.++.++.++.||+|+++|++|-
T Consensus 241 ~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred HHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee
Confidence 445678899998877 3322 236899999999999999999964
No 122
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.78 E-value=2.4e-05 Score=78.85 Aligned_cols=97 Identities=15% Similarity=0.234 Sum_probs=70.9
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCE-EEEEeCCCCchh--hhhc---CCccc---ChHhhhccCCEEEEecCCCcc
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVS-KILYTSRRVKEE--GTAL---GAQLV---PLDTLCAESDFIFVTCALTKD 1023 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~-Vi~~d~~~~~~~--~~~~---g~~~~---~l~ell~~sDvV~l~lPlt~~ 1023 (1128)
++.|+++.|||.|.+|+.++..|...|++ +.+++++..+.. .... .+... ++.+.+.++|+|+.+.|....
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence 68999999999999999999999999997 888887666544 2333 22233 566678999999999996544
Q ss_pred cccccCHHHHccCCCCc-EEEEcCCCcccC
Q psy13054 1024 TEQLIGRKQFSLMKPTA-ILVNTSRGGLLD 1052 (1128)
Q Consensus 1024 T~~li~~~~l~~mk~ga-~lIN~aRG~lVd 1052 (1128)
.+.++.++..++.. +++++|...-||
T Consensus 89 ---~i~~~~~~~~~~~~~~v~Dla~Pr~i~ 115 (135)
T PF01488_consen 89 ---IITEEMLKKASKKLRLVIDLAVPRDID 115 (135)
T ss_dssp ---SSTHHHHTTTCHHCSEEEES-SS-SB-
T ss_pred ---ccCHHHHHHHHhhhhceeccccCCCCC
Confidence 78888888776543 777776554443
No 123
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.77 E-value=8.3e-05 Score=85.84 Aligned_cols=100 Identities=20% Similarity=0.169 Sum_probs=75.7
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhc--------C------Ccc-cChHhhhccCCEEEEecCC
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTAL--------G------AQL-VPLDTLCAESDFIFVTCAL 1020 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~--------g------~~~-~~l~ell~~sDvV~l~lPl 1020 (1128)
.+|+|||+|.||..+|..|...|.+|.+|+++.++.+ .... + +.. .+++++++.+|+|++++|.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~~ 84 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVPS 84 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECch
Confidence 5799999999999999999999999999987655433 2211 2 222 3788889999999999996
Q ss_pred CcccccccCHHHHccCCCCcEEEEcCCC-cccC--HHHHHHHHhc
Q psy13054 1021 TKDTEQLIGRKQFSLMKPTAILVNTSRG-GLLD--QEALVEFLKD 1062 (1128)
Q Consensus 1021 t~~T~~li~~~~l~~mk~ga~lIN~aRG-~lVd--e~aL~~aL~~ 1062 (1128)
. .+ ++.++.++++.++|+++.| ..-+ .+.+.+.+.+
T Consensus 85 ~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 85 K-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred H-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 6 22 5667889999999999998 3332 4566666654
No 124
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=97.76 E-value=0.00014 Score=85.90 Aligned_cols=128 Identities=16% Similarity=0.213 Sum_probs=87.6
Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhh----------------cCCcc-c--ChHhhhccCCEEEEe
Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTA----------------LGAQL-V--PLDTLCAESDFIFVT 1017 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~----------------~g~~~-~--~l~ell~~sDvV~l~ 1017 (1128)
+|+|||+|.+|..+|..+. .|.+|++||....+.+ ..+ .+.+. . +..++.+.||+|++|
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~ 80 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIA 80 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEe
Confidence 6999999999999997665 5999999998776544 111 11222 2 356778999999999
Q ss_pred cCCCccc-ccccCH-------HHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccc---c
Q psy13054 1018 CALTKDT-EQLIGR-------KQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLV---Q 1086 (1128)
Q Consensus 1018 lPlt~~T-~~li~~-------~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~---~ 1086 (1128)
+|...+- .+.+|- +.+..+++|.++|+.|.-.+=..+.+.+.+.+..+ +|.+|.+.+.+.+. .
T Consensus 81 Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v------~~~PE~l~~G~a~~d~~~ 154 (388)
T PRK15057 81 TPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENI------IFSPEFLREGKALYDNLH 154 (388)
T ss_pred CCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcE------EECcccccCCcccccccC
Confidence 9965221 112221 22334799999999999999889999988765322 25788776655444 3
Q ss_pred CCCeEE
Q psy13054 1087 LDNCVL 1092 (1128)
Q Consensus 1087 ~pNvil 1092 (1128)
.|.|++
T Consensus 155 p~rvv~ 160 (388)
T PRK15057 155 PSRIVI 160 (388)
T ss_pred CCEEEE
Confidence 444443
No 125
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.75 E-value=8.6e-05 Score=83.48 Aligned_cols=126 Identities=18% Similarity=0.232 Sum_probs=88.0
Q ss_pred ccCCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
++.||+++|||. |.+|+++|.+|...|++|.+|.++. .++.+..++||+|+++++.. +++..+
T Consensus 155 ~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t------------~~l~~~~~~ADIVI~avg~~----~~v~~~ 218 (284)
T PRK14179 155 ELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRT------------RNLAEVARKADILVVAIGRG----HFVTKE 218 (284)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCC------------CCHHHHHhhCCEEEEecCcc----ccCCHH
Confidence 589999999999 9999999999999999999984322 16889999999999999965 356654
Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHH
Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~ 1111 (1128)
. +|+|+++|++|--.+. +|++-| ||-.++- .. ---.+||==||.-.-+..-+.+-+
T Consensus 219 ~---ik~GavVIDvgin~~~----------~gkl~G---DVdf~~v-------~~-~a~~iTPVPGGVGp~T~a~L~~N~ 274 (284)
T PRK14179 219 F---VKEGAVVIDVGMNRDE----------NGKLIG---DVDFDEV-------AE-VASYITPVPGGVGPMTITMLMEQT 274 (284)
T ss_pred H---ccCCcEEEEecceecC----------CCCeec---CccHHHH-------Hh-hccEecCCCCCchHHHHHHHHHHH
Confidence 3 8999999999855532 355544 4432211 11 113588887776655554444444
Q ss_pred HHHHHHH
Q psy13054 1112 AENIIRG 1118 (1128)
Q Consensus 1112 ~~nl~~~ 1118 (1128)
++-.+++
T Consensus 275 ~~a~~~~ 281 (284)
T PRK14179 275 YQAALRS 281 (284)
T ss_pred HHHHHHH
Confidence 4444433
No 126
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.70 E-value=0.00027 Score=80.29 Aligned_cols=115 Identities=16% Similarity=0.206 Sum_probs=79.2
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhh--------------cCC-------------ccc-ChHhh
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTA--------------LGA-------------QLV-PLDTL 1007 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~--------------~g~-------------~~~-~l~el 1007 (1128)
++|+|||.|.||..+|..+...|++|++||.+....+ ..+ .+. ... ++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 6899999999999999999999999999997665432 100 011 112 34 56
Q ss_pred hccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCC
Q psy13054 1008 CAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIP 1075 (1128)
Q Consensus 1008 l~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~ 1075 (1128)
+++||+|+.++|...+.+.-+=++.-+.++++++|+++..| +....+.+.+... -...++..|.+
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~~-~r~ig~hf~~P 147 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALERK-DRFIGMHWFNP 147 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCCc-ccEEEEecCCC
Confidence 78999999999977654443333445567899999987776 4567777777542 23444555544
No 127
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.69 E-value=5.6e-05 Score=85.15 Aligned_cols=101 Identities=13% Similarity=0.212 Sum_probs=76.5
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCC----EEEEEeCCCCchh-hh-hcCCccc-ChHhhhccCCEEEEecCCCcccccccC
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKV----SKILYTSRRVKEE-GT-ALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIG 1029 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~----~Vi~~d~~~~~~~-~~-~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~ 1029 (1128)
++|||||+|+||.++++.|..-|. +|+++|+...+.+ .. ..|+... +..+++++||+|++++| ......++.
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl~ 81 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVIN 81 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHHH
Confidence 479999999999999999987664 6888887655443 22 3566544 68889999999999999 466766663
Q ss_pred HHHHccCCCCcEEEEcCCCcccCHHHHHHHHh
Q psy13054 1030 RKQFSLMKPTAILVNTSRGGLLDQEALVEFLK 1061 (1128)
Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~ 1061 (1128)
+.-..++++.++|.+.=| ++.+.|.+.|.
T Consensus 82 -~l~~~~~~~~lvISi~AG--i~i~~l~~~l~ 110 (272)
T PRK12491 82 -QIKDQIKNDVIVVTIAAG--KSIKSTENEFD 110 (272)
T ss_pred -HHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence 344456789999999877 56666776664
No 128
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.66 E-value=0.0001 Score=83.28 Aligned_cols=104 Identities=11% Similarity=0.184 Sum_probs=75.0
Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCC----CEEEEEeCCCCch-h--hhhcCCccc-ChHhhhccCCEEEEecCCCccccc
Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFK----VSKILYTSRRVKE-E--GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQ 1026 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG----~~Vi~~d~~~~~~-~--~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~ 1026 (1128)
.+.+|||||+|+||.++++.|..-| .+|++++++.++. . ....+++.. +..+++++||+|++++| ++....
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~-p~~~~~ 80 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMK-PKDVAE 80 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeC-HHHHHH
Confidence 3568999999999999999998877 6788887654322 2 233466543 77889999999999999 444555
Q ss_pred ccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhc
Q psy13054 1027 LIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128)
Q Consensus 1027 li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128)
++ .+....++++.++|++.-| +..+.+.+.+..
T Consensus 81 vl-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~~ 113 (279)
T PRK07679 81 AL-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQK 113 (279)
T ss_pred HH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence 55 3444556889999998655 356666666543
No 129
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.64 E-value=0.00014 Score=81.87 Aligned_cols=78 Identities=19% Similarity=0.332 Sum_probs=67.5
Q ss_pred ccCCCeEEEEEcCh-hhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLGN-IGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G~-IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
++.||++.|||.|. +|+.+|..|...|++|.+++++. .++.+.+++||+|+.+++.. ++|.++
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t------------~~l~~~~~~ADIVIsAvg~p----~~i~~~ 218 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS------------KDMASYLKDADVIVSAVGKP----GLVTKD 218 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------hhHHHHHhhCCEEEECCCCC----cccCHH
Confidence 58999999999998 99999999999999999987543 25889999999999999853 478876
Q ss_pred HHccCCCCcEEEEcCCCc
Q psy13054 1032 QFSLMKPTAILVNTSRGG 1049 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~ 1049 (1128)
. +|+|+++|++|--.
T Consensus 219 ~---vk~gavVIDvGi~~ 233 (286)
T PRK14175 219 V---VKEGAVIIDVGNTP 233 (286)
T ss_pred H---cCCCcEEEEcCCCc
Confidence 4 68999999998654
No 130
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=97.61 E-value=0.00026 Score=86.44 Aligned_cols=116 Identities=27% Similarity=0.352 Sum_probs=84.9
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhh------------hhcC-------------Cccc-ChHhhhcc
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG------------TALG-------------AQLV-PLDTLCAE 1010 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~------------~~~g-------------~~~~-~l~ell~~ 1010 (1128)
++|||||+|.||..+|..+...|.+|++||......+. .+.| ++.. ++++ ++.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 67999999999999999999999999999977654331 2223 2322 5655 569
Q ss_pred CCEEEEecCCCcccccccCHHHHccCCCCcEE-EEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCC
Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL-VNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEP 1077 (1128)
Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~l-IN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EP 1077 (1128)
||+|+-++|.+.+.+..+=++.-+.++++++| .|||.-.+ ..+..+++.- =...++..|.+-|
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~p-~r~~G~hff~Pa~ 150 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKHP-ERVAGLHFFNPVP 150 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCc-ccEEEEeecCCcc
Confidence 99999999999998887655555556899999 59987776 3676666532 2345667776544
No 131
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=97.59 E-value=0.00017 Score=81.53 Aligned_cols=91 Identities=15% Similarity=0.098 Sum_probs=74.3
Q ss_pred hHHHHHHHhhCCCEEEEEeCCCCch------hhhhcCCccc-ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCc
Q psy13054 968 GLETAKLLKAFKVSKILYTSRRVKE------EGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTA 1040 (1128)
Q Consensus 968 G~~vA~~l~afG~~Vi~~d~~~~~~------~~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga 1040 (1128)
|+++|++|...|..|++||++.... ...+.|+..+ +..+++++||+|++|+|..+.++.++ ...++.+++|+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga 110 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA 110 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence 8999999999999999998765421 1455677765 68899999999999999888898888 56899999999
Q ss_pred EEEEcCCCcccCHHHHHHHHhc
Q psy13054 1041 ILVNTSRGGLLDQEALVEFLKD 1062 (1128)
Q Consensus 1041 ~lIN~aRG~lVde~aL~~aL~~ 1062 (1128)
++||++.. +.+.+++.|+.
T Consensus 111 IVID~STI---sP~t~~~~~e~ 129 (341)
T TIGR01724 111 VICNTCTV---SPVVLYYSLEK 129 (341)
T ss_pred EEEECCCC---CHHHHHHHHHH
Confidence 99999764 56666666655
No 132
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.59 E-value=0.00057 Score=78.33 Aligned_cols=137 Identities=18% Similarity=0.219 Sum_probs=84.4
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-h-----------hhcCC-------------cc-cChHhhhcc
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-G-----------TALGA-------------QL-VPLDTLCAE 1010 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~-----------~~~g~-------------~~-~~l~ell~~ 1010 (1128)
++|+|||.|.||..+|..+...|.+|++||+.....+ . .+.|. .. .++.++++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 4799999999999999999999999999997754322 1 12231 22 378889999
Q ss_pred CCEEEEecCCCcccccccCHHHHcc-CCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCC
Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSL-MKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 1089 (1128)
Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~-mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pN 1089 (1128)
+|+|+.++|...+.+..+=.+ ++. .+++.++..... ......+.+.+.... ..+ .|-+-+ | -+..|=
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~-l~~~~~~~~ii~ssts--~~~~~~la~~~~~~~-~~~-~~hp~~-p------~~~~~l 150 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAE-LDALAPPHAILASSTS--ALLASAFTEHLAGRE-RCL-VAHPIN-P------PYLIPV 150 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHH-HHHhCCCcceEEEeCC--CCCHHHHHHhcCCcc-cEE-EEecCC-C------cccCce
Confidence 999999999775544333222 444 455555543333 345667887775432 222 343332 2 111233
Q ss_pred eEECCCCCCCcHHHHHH
Q psy13054 1090 CVLTPHTSSATKAVRDE 1106 (1128)
Q Consensus 1090 vilTPHiag~t~e~~~~ 1106 (1128)
+.++||-++ +++..++
T Consensus 151 veiv~~~~t-~~~~~~~ 166 (308)
T PRK06129 151 VEVVPAPWT-APATLAR 166 (308)
T ss_pred EEEeCCCCC-CHHHHHH
Confidence 668887543 3444443
No 133
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=97.58 E-value=3.7e-05 Score=83.43 Aligned_cols=129 Identities=12% Similarity=0.167 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHH--HhhCCCEEEEEeCC
Q psy13054 911 TVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKL--LKAFKVSKILYTSR 988 (1128)
Q Consensus 911 sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~--l~afG~~Vi~~d~~ 988 (1128)
+.++|.++.++...|++. .|. ..++++|||+|.+|+.+++. ....|++++++-+.
T Consensus 62 ~~~gy~v~~l~~~~~~~l---------~~~--------------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~ 118 (213)
T PRK05472 62 RGVGYNVEELLEFIEKIL---------GLD--------------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV 118 (213)
T ss_pred CCCCeeHHHHHHHHHHHh---------CCC--------------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC
Confidence 444688888888887665 222 23579999999999999986 34678988875433
Q ss_pred CCchhh-hhcCC---cccChHhhhcc--CCEEEEecCCCcc---cccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHH
Q psy13054 989 RVKEEG-TALGA---QLVPLDTLCAE--SDFIFVTCALTKD---TEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEF 1059 (1128)
Q Consensus 989 ~~~~~~-~~~g~---~~~~l~ell~~--sDvV~l~lPlt~~---T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~a 1059 (1128)
.+.... ...++ ...++++++++ .|+|++++|.... ...+.......-|...++.+|+.+|.+|+.++|..+
T Consensus 119 d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~ 198 (213)
T PRK05472 119 DPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVE 198 (213)
T ss_pred ChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHH
Confidence 222111 11122 12367888765 9999999997765 334445555667788899999999999999999999
Q ss_pred Hhc
Q psy13054 1060 LKD 1062 (1128)
Q Consensus 1060 L~~ 1062 (1128)
|..
T Consensus 199 l~~ 201 (213)
T PRK05472 199 LQT 201 (213)
T ss_pred HHH
Confidence 874
No 134
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.57 E-value=0.00041 Score=84.70 Aligned_cols=104 Identities=17% Similarity=0.168 Sum_probs=75.2
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hh-------------------hcC-Cccc-ChHhhhccCCEE
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GT-------------------ALG-AQLV-PLDTLCAESDFI 1014 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~-------------------~~g-~~~~-~l~ell~~sDvV 1014 (1128)
++|||||.|.||..+|..+...|.+|.+||+.....+ .. ..+ ++.+ ++++++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 5799999999999999999999999999998765432 11 012 3333 788999999999
Q ss_pred EEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhc
Q psy13054 1015 FVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128)
Q Consensus 1015 ~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128)
+.++|...+.+..+=++.-+.+++++++ .++..++ +...+.+.+..
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~iI-~SsTsgi-~~s~l~~~~~~ 130 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDALI-GSSTSGF-LPSDLQEGMTH 130 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcEE-EEcCCCC-CHHHHHhhcCC
Confidence 9999988776664333444567778754 4444443 35577777754
No 135
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.57 E-value=0.00021 Score=81.04 Aligned_cols=115 Identities=17% Similarity=0.229 Sum_probs=80.4
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhh------------hhcCC-------------cc-cChHhhhcc
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG------------TALGA-------------QL-VPLDTLCAE 1010 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~------------~~~g~-------------~~-~~l~ell~~ 1010 (1128)
++|||||.|.||..+|..+...|.+|++||......+. .+.|. +. .++ +.++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 48999999999999999999999999999987664321 11221 12 256 55799
Q ss_pred CCEEEEecCCCcccccccCHHHHccC-CCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCC
Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLM-KPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIP 1075 (1128)
Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~m-k~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~ 1075 (1128)
||+|+-++|.+.+.+.-+=++.-+.+ +++++|++.+.+-.+. ++..+++.. =...++..|.+
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~--~la~~~~~~-~r~~g~hf~~P 147 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIM--KLAAATKRP-GRVLGLHFFNP 147 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHhhcCCC-ccEEEEecCCC
Confidence 99999999999998876654333444 8999998887765544 444444322 22445566654
No 136
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.57 E-value=0.00011 Score=84.16 Aligned_cols=93 Identities=18% Similarity=0.227 Sum_probs=70.5
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhc--------------CCcc-cChHhhhccCCEEEEecCC
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTAL--------------GAQL-VPLDTLCAESDFIFVTCAL 1020 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~--------------g~~~-~~l~ell~~sDvV~l~lPl 1020 (1128)
++|+|||+|.||..+|..|...|.+|.+|++.....+ .... +... .+++++++.+|+|++++|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 3799999999999999999999999999987654433 2222 2222 3677889999999999995
Q ss_pred CcccccccCHHHHccCCCCcEEEEcCCCccc
Q psy13054 1021 TKDTEQLIGRKQFSLMKPTAILVNTSRGGLL 1051 (1128)
Q Consensus 1021 t~~T~~li~~~~l~~mk~ga~lIN~aRG~lV 1051 (1128)
+.+..++. .....++++.++|+++.|--.
T Consensus 82 -~~~~~v~~-~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 82 -QALREVLK-QLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred -HHHHHHHH-HHHhhcCCCCEEEEEeecccC
Confidence 56666663 455667899999999866544
No 137
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.56 E-value=0.00026 Score=76.25 Aligned_cols=115 Identities=21% Similarity=0.274 Sum_probs=96.1
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChHhh---hccCCEEEEecCCCcccccccCHH
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLDTL---CAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~el---l~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
+++|.||+|+||..++++|..-|.+|++||.+....+ ....+++.+ +++|+ |...-+|-+++|...-|..+|+ +
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~-~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID-D 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHH-H
Confidence 4689999999999999999999999999997776554 555666544 66765 5668999999999988888885 6
Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccC
Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMI 1074 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e 1074 (1128)
.-..|.+|-++|+-+...--|.....+.|++..|.. +||=.
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~f--lD~GT 120 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHF--LDVGT 120 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeE--EeccC
Confidence 778889999999999999889998999999998865 68743
No 138
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.53 E-value=0.00059 Score=78.16 Aligned_cols=109 Identities=17% Similarity=0.315 Sum_probs=73.4
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhh-----cC--------------Ccc-cChHhhhccCCEEE
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTA-----LG--------------AQL-VPLDTLCAESDFIF 1015 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~-----~g--------------~~~-~~l~ell~~sDvV~ 1015 (1128)
++|||||.|.||..+|..+...|.+|++||++....+ ..+ .+ ++. .++++++++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 5799999999999999999999999999997654432 111 11 122 36778899999999
Q ss_pred EecCCCcc-cccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhc-CCceEE
Q psy13054 1016 VTCALTKD-TEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKD-KKIGGA 1068 (1128)
Q Consensus 1016 l~lPlt~~-T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~-g~i~ga 1068 (1128)
+++|...+ ...++. +.-...+++++++...-| +....+.+.+.. .++.++
T Consensus 85 ~av~~~~~~~~~v~~-~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~~~~~~ig~ 136 (311)
T PRK06130 85 EAVPEKLELKRDVFA-RLDGLCDPDTIFATNTSG--LPITAIAQAVTRPERFVGT 136 (311)
T ss_pred EeccCcHHHHHHHHH-HHHHhCCCCcEEEECCCC--CCHHHHHhhcCCcccEEEE
Confidence 99997654 334443 333345777777544333 345677777753 333343
No 139
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=97.52 E-value=0.0003 Score=85.74 Aligned_cols=116 Identities=21% Similarity=0.254 Sum_probs=84.7
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-h-----------hhcC-------------Ccc-cChHhhhcc
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-G-----------TALG-------------AQL-VPLDTLCAE 1010 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~-----------~~~g-------------~~~-~~l~ell~~ 1010 (1128)
++|||||.|.||+.+|..+...|++|++||......+ . .+.| ++. .++++ ++.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence 5799999999999999999999999999997755432 1 1122 122 25655 469
Q ss_pred CCEEEEecCCCcccccccCHHHHccCCCCcEEE-EcCCCcccCHHHHHHHHhcCCceEEEEeccCCCC
Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILV-NTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEP 1077 (1128)
Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EP 1077 (1128)
||+|+.++|...+.+..+=.+.-+.++++++|. |||.-.+ ..+.++++. +-...++..|.+-|
T Consensus 85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Pap 148 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPAP 148 (503)
T ss_pred CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCccc
Confidence 999999999998888765555556678888877 7766554 467777753 34566777777655
No 140
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.46 E-value=0.0002 Score=79.78 Aligned_cols=89 Identities=18% Similarity=0.236 Sum_probs=73.0
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcCCcccChHhhhccCCEEEEecCCCcccccccCH
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGR 1030 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~ 1030 (1128)
-|.||||+|||||.=|++=|..|+--|.+|++--+...... +.+.|++..+.+|+.++||+|.+.+|...+ ..++..
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PDe~q-~~vy~~ 93 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPDEQQ-KEVYEK 93 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCchhhH-HHHHHH
Confidence 58999999999999999999999999999877654444422 667899988999999999999999995543 346666
Q ss_pred HHHccCCCCcEE
Q psy13054 1031 KQFSLMKPTAIL 1042 (1128)
Q Consensus 1031 ~~l~~mk~ga~l 1042 (1128)
+.-..||+|+.|
T Consensus 94 ~I~p~Lk~G~aL 105 (338)
T COG0059 94 EIAPNLKEGAAL 105 (338)
T ss_pred HhhhhhcCCceE
Confidence 777788888855
No 141
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.45 E-value=0.00016 Score=72.14 Aligned_cols=90 Identities=20% Similarity=0.357 Sum_probs=56.4
Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhh-c-CCcccChHhhhccCCEEEEecCCCcccccccCH
Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTA-L-GAQLVPLDTLCAESDFIFVTCALTKDTEQLIGR 1030 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~-~-g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~ 1030 (1128)
...+|||||.|++|..+++.|+..|..|..+..+..... +.. . .....+++|+++++|++++++|.. ....+. +
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~va-~ 86 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEVA-E 86 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHHH-H
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHHH-H
Confidence 346899999999999999999999999998876655332 211 2 223458899999999999999966 333332 2
Q ss_pred HHHcc--CCCCcEEEEcC
Q psy13054 1031 KQFSL--MKPTAILVNTS 1046 (1128)
Q Consensus 1031 ~~l~~--mk~ga~lIN~a 1046 (1128)
+.-.. .++|.+++=+|
T Consensus 87 ~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 87 QLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp HHHCC--S-TT-EEEES-
T ss_pred HHHHhccCCCCcEEEECC
Confidence 33333 58899999884
No 142
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.44 E-value=0.00023 Score=85.04 Aligned_cols=98 Identities=17% Similarity=0.264 Sum_probs=72.7
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCC-CEEEEEeCCCCchh--hhhcCCcc---cChHhhhccCCEEEEecCCCccccc
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFK-VSKILYTSRRVKEE--GTALGAQL---VPLDTLCAESDFIFVTCALTKDTEQ 1026 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG-~~Vi~~d~~~~~~~--~~~~g~~~---~~l~ell~~sDvV~l~lPlt~~T~~ 1026 (1128)
.+.|++++|||+|.||+.+++.|...| .+|+++++...+.. +...+... .++.+.+.++|+|+.+++ .+..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~---s~~~ 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTG---APHP 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCC---CCCc
Confidence 478999999999999999999999999 68889987665543 33334322 356788899999999865 4456
Q ss_pred ccCHHHHccCC----CCcEEEEcCCCcccCH
Q psy13054 1027 LIGRKQFSLMK----PTAILVNTSRGGLLDQ 1053 (1128)
Q Consensus 1027 li~~~~l~~mk----~ga~lIN~aRG~lVde 1053 (1128)
+++++.++.+. ...++|+.+...=||.
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~Prdid~ 284 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAVPRDVDP 284 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCCCCCCCh
Confidence 78888887752 2358888876544443
No 143
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.41 E-value=0.0006 Score=76.75 Aligned_cols=125 Identities=18% Similarity=0.182 Sum_probs=86.3
Q ss_pred ccCCCeEEEEEcCh-hhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLGN-IGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G~-IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
++.||++.|||.|. +|+++|.+|...|++|.+++++. .++.+.+++||+|+.+++-. +++..
T Consensus 156 ~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvi~avG~p----~~v~~- 218 (285)
T PRK10792 156 DTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT------------KNLRHHVRNADLLVVAVGKP----GFIPG- 218 (285)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC------------CCHHHHHhhCCEEEEcCCCc----ccccH-
Confidence 58999999999999 99999999999999999987543 25889999999999999533 46776
Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHH
Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~ 1111 (1128)
+.+|+|+++|++|--.+- +|++.| ||-..+ .... --.+||=-||...-+..-+.+-+
T Consensus 219 --~~vk~gavVIDvGin~~~----------~gk~~G---Dvd~~~-------~~~~-a~~itPvPGGVGp~T~a~L~~N~ 275 (285)
T PRK10792 219 --EWIKPGAIVIDVGINRLE----------DGKLVG---DVEFET-------AAER-ASWITPVPGGVGPMTVATLLENT 275 (285)
T ss_pred --HHcCCCcEEEEccccccc----------CCCcCC---CcCHHH-------HHhh-ccCcCCCCCCChHHHHHHHHHHH
Confidence 556899999999844321 233322 221000 0111 23478877777766665555544
Q ss_pred HHHHHH
Q psy13054 1112 AENIIR 1117 (1128)
Q Consensus 1112 ~~nl~~ 1117 (1128)
++-.++
T Consensus 276 ~~a~~~ 281 (285)
T PRK10792 276 LQACEE 281 (285)
T ss_pred HHHHHH
Confidence 444333
No 144
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.40 E-value=0.00026 Score=78.96 Aligned_cols=100 Identities=15% Similarity=0.262 Sum_probs=72.4
Q ss_pred eEEEEEcChhhHHHHHHHhhCCCE---EEEEeCCCCchh-h-hhc-CCcc-cChHhhhccCCEEEEecCCCcccccccCH
Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVS---KILYTSRRVKEE-G-TAL-GAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGR 1030 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~---Vi~~d~~~~~~~-~-~~~-g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li~~ 1030 (1128)
+|||||+|+||+.+++.|...|.. +.++++...+.. . ... ++.. .+.+++++++|+|++++| .+....++..
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~~ 80 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLRA 80 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHHH
Confidence 699999999999999999877743 456765544333 2 223 3444 378889999999999999 4555555532
Q ss_pred HHHccCCCCcEEEEcCCCcccCHHHHHHHHhcC
Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128)
Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128)
+ .++++.++|.++ .-+..+.|.+.++.+
T Consensus 81 --l-~~~~~~~vis~~--ag~~~~~l~~~~~~~ 108 (258)
T PRK06476 81 --L-RFRPGQTVISVI--AATDRAALLEWIGHD 108 (258)
T ss_pred --h-ccCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence 3 357899999987 447888888887653
No 145
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=97.39 E-value=0.001 Score=79.35 Aligned_cols=90 Identities=22% Similarity=0.247 Sum_probs=64.5
Q ss_pred ccCCCeEEEEEc----------ChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCc
Q psy13054 953 GLKGATVGIVGL----------GNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTK 1022 (1128)
Q Consensus 953 ~L~gktvGIIG~----------G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~ 1022 (1128)
.+.|++|+|+|+ ..-...+++.|...|.+|.+|||..........+ ...++++.++.+|+|+++.+-.+
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~-~~~~~~~~~~~ad~~v~~t~~~~ 388 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLP-LIDDLEEALKGADALVILTDHDE 388 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcc-cCCCHHHHHhCCCEEEEecCCHH
Confidence 479999999998 3467899999999999999999986554322211 13588899999999999988543
Q ss_pred ccccccCHHHHccCCCCcEEEEc
Q psy13054 1023 DTEQLIGRKQFSLMKPTAILVNT 1045 (1128)
Q Consensus 1023 ~T~~li~~~~l~~mk~ga~lIN~ 1045 (1128)
-+. ++-+.++.+-...++|++
T Consensus 389 -~~~-~~~~~~~~~~~~~~v~D~ 409 (411)
T TIGR03026 389 -FKD-LDLEKIKDLMKGKVVVDT 409 (411)
T ss_pred -Hhc-cCHHHHHHhcCCCEEEeC
Confidence 232 355555543334577764
No 146
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.36 E-value=0.00043 Score=74.17 Aligned_cols=89 Identities=20% Similarity=0.206 Sum_probs=67.1
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh---hhhcC--CcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE---GTALG--AQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~---~~~~g--~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
++++|+|.|+||..+|+++...|.+|++-.++.++.. .+..+ ++..+.++..+.+|||++.+|...- ..+ -++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~-~~v-~~~ 79 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAI-PDV-LAE 79 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHH-HhH-HHH
Confidence 5799999999999999999999999998877777644 22233 3345889999999999999996532 222 244
Q ss_pred HHccCCCCcEEEEcCCC
Q psy13054 1032 QFSLMKPTAILVNTSRG 1048 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG 1048 (1128)
...... |.++|++.-.
T Consensus 80 l~~~~~-~KIvID~tnp 95 (211)
T COG2085 80 LRDALG-GKIVIDATNP 95 (211)
T ss_pred HHHHhC-CeEEEecCCC
Confidence 444455 8899988664
No 147
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.35 E-value=0.0011 Score=80.65 Aligned_cols=95 Identities=22% Similarity=0.329 Sum_probs=73.4
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccCh---------------------------
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPL--------------------------- 1004 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l--------------------------- 1004 (1128)
...+.+|.|+|.|.+|...++.++.+|++|+++|.+..+.+ +++.|.+.+.+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 45799999999999999999999999999999998877665 56667653211
Q ss_pred -HhhhccCCEEEEecCCCcc-cccccCHHHHccCCCCcEEEEcCC
Q psy13054 1005 -DTLCAESDFIFVTCALTKD-TEQLIGRKQFSLMKPTAILVNTSR 1047 (1128)
Q Consensus 1005 -~ell~~sDvV~l~lPlt~~-T~~li~~~~l~~mk~ga~lIN~aR 1047 (1128)
.+.++.+|+|+.+..-... .-.+|.++-++.||+|.++|++|=
T Consensus 242 ~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 1112569999988764221 234667899999999999999974
No 148
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.35 E-value=0.00076 Score=62.55 Aligned_cols=66 Identities=23% Similarity=0.331 Sum_probs=56.1
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhC-CCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAF-KVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~af-G~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
.+.+++++|+|.|.+|+.+++.+... +.++.+||+ |+++.+.|.. +++.++
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------di~i~~~~~~----~~~~~~ 71 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------DILVTATPAG----VPVLEE 71 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------CEEEEcCCCC----CCchHH
Confidence 37889999999999999999999998 677877764 9999888854 566666
Q ss_pred HHccCCCCcEEEEcC
Q psy13054 1032 QFSLMKPTAILVNTS 1046 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~a 1046 (1128)
..+.|++++++++++
T Consensus 72 ~~~~~~~~~~v~~~a 86 (86)
T cd05191 72 ATAKINEGAVVIDLA 86 (86)
T ss_pred HHHhcCCCCEEEecC
Confidence 789999999999874
No 149
>PRK07680 late competence protein ComER; Validated
Probab=97.33 E-value=0.00044 Score=77.80 Aligned_cols=100 Identities=18% Similarity=0.278 Sum_probs=73.0
Q ss_pred eEEEEEcChhhHHHHHHHhhCCC----EEEEEeCCCCchh-h-hhc-CCccc-ChHhhhccCCEEEEecCCCcccccccC
Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKV----SKILYTSRRVKEE-G-TAL-GAQLV-PLDTLCAESDFIFVTCALTKDTEQLIG 1029 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~----~Vi~~d~~~~~~~-~-~~~-g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~ 1029 (1128)
+|||||+|.||+.+++.|...|. .|.+|+++..+.. . ... ++... +..+++.++|+|++++| ......++.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl~ 80 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLLQ 80 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHHH
Confidence 69999999999999999988773 6888887654433 2 222 45443 77888999999999998 444555553
Q ss_pred HHHHccCCCCcEEEEcCCCcccCHHHHHHHHh
Q psy13054 1030 RKQFSLMKPTAILVNTSRGGLLDQEALVEFLK 1061 (1128)
Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~ 1061 (1128)
+....++++.++|.++-| +..+.|.+.+.
T Consensus 81 -~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 81 -KLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred -HHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 344567788999999854 36777776654
No 150
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.33 E-value=0.00042 Score=79.83 Aligned_cols=86 Identities=19% Similarity=0.214 Sum_probs=64.7
Q ss_pred EEEEEcChhhHHHHHHHhh-CCCEEEEEeCCCCchh---hhhcCC------------------c-ccChHhhhccCCEEE
Q psy13054 959 VGIVGLGNIGLETAKLLKA-FKVSKILYTSRRVKEE---GTALGA------------------Q-LVPLDTLCAESDFIF 1015 (1128)
Q Consensus 959 vGIIG~G~IG~~vA~~l~a-fG~~Vi~~d~~~~~~~---~~~~g~------------------~-~~~l~ell~~sDvV~ 1015 (1128)
|||+|||+||+.+++.+.. -+|+++++++..++.. +...++ . ..++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6999999999999999764 4789988876443311 221221 1 125899999999999
Q ss_pred EecCCCcccccccCHHHHccCCCCcEEEEcCC
Q psy13054 1016 VTCALTKDTEQLIGRKQFSLMKPTAILVNTSR 1047 (1128)
Q Consensus 1016 l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aR 1047 (1128)
.|. +.+.|..+++.+.+|+++++|+-.--
T Consensus 81 e~T---p~~~~~~na~~~~~~GakaVl~~~p~ 109 (333)
T TIGR01546 81 DAT---PGGIGAKNKPLYEKAGVKAIFQGGEK 109 (333)
T ss_pred ECC---CCCCChhhHHHHHhCCcCEEEECCCC
Confidence 875 56778999999999999999987543
No 151
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.31 E-value=0.00089 Score=69.48 Aligned_cols=79 Identities=23% Similarity=0.343 Sum_probs=58.6
Q ss_pred ccCCCeEEEEEcCh-hhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLGN-IGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G~-IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
++.||++.|||-+. +|++++..|..-|+.|..++.+. .++++.+++||+|+.+++-. ++|..+
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T------------~~l~~~~~~ADIVVsa~G~~----~~i~~~ 96 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT------------KNLQEITRRADIVVSAVGKP----NLIKAD 96 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS------------SSHHHHHTTSSEEEE-SSST----T-B-GG
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC------------CcccceeeeccEEeeeeccc----cccccc
Confidence 68999999999985 99999999999999999887544 25788999999999999843 567654
Q ss_pred HHccCCCCcEEEEcCCCcc
Q psy13054 1032 QFSLMKPTAILVNTSRGGL 1050 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~l 1050 (1128)
.+|+|+++||++.-..
T Consensus 97 ---~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 97 ---WIKPGAVVIDVGINYV 112 (160)
T ss_dssp ---GS-TTEEEEE--CEEE
T ss_pred ---cccCCcEEEecCCccc
Confidence 5689999999988776
No 152
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.30 E-value=0.00074 Score=76.07 Aligned_cols=77 Identities=19% Similarity=0.297 Sum_probs=65.5
Q ss_pred ccCCCeEEEEEcCh-hhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLGN-IGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G~-IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
++.||++.|||.|+ +|+++|..|...|++|.+++.+.. ++.+..++||+|++++.-. ++|.++
T Consensus 161 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~------------~l~~~~~~ADIvv~AvG~p----~~i~~~ 224 (287)
T PRK14176 161 DIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTD------------DLKKYTLDADILVVATGVK----HLIKAD 224 (287)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCC------------CHHHHHhhCCEEEEccCCc----cccCHH
Confidence 58999999999999 999999999999999999874332 5788999999999977643 477766
Q ss_pred HHccCCCCcEEEEcCCC
Q psy13054 1032 QFSLMKPTAILVNTSRG 1048 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG 1048 (1128)
.+|+|+++|++|--
T Consensus 225 ---~vk~gavVIDvGin 238 (287)
T PRK14176 225 ---MVKEGAVIFDVGIT 238 (287)
T ss_pred ---HcCCCcEEEEeccc
Confidence 67899999999854
No 153
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.29 E-value=0.00029 Score=73.67 Aligned_cols=94 Identities=22% Similarity=0.347 Sum_probs=68.3
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCc---c------------------------cCh
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQ---L------------------------VPL 1004 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~---~------------------------~~l 1004 (1128)
.+...++.|+|.|+.|+..++.++++|++|+.+|.+..... ....+.. . ..+
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 96 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNF 96 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHH
Confidence 67889999999999999999999999999999998765433 2221111 1 136
Q ss_pred HhhhccCCEEEEecC-CCcccccccCHHHHccCCCCcEEEEcC
Q psy13054 1005 DTLCAESDFIFVTCA-LTKDTEQLIGRKQFSLMKPTAILVNTS 1046 (1128)
Q Consensus 1005 ~ell~~sDvV~l~lP-lt~~T~~li~~~~l~~mk~ga~lIN~a 1046 (1128)
.+.++.+|+|+..+- -.+..-.+|.++.++.||++++++++|
T Consensus 97 ~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 97 AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 788999999986443 355666799999999999999999995
No 154
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.26 E-value=0.00018 Score=85.10 Aligned_cols=100 Identities=18% Similarity=0.214 Sum_probs=76.1
Q ss_pred ccCCceeeeeeCCCCCCCCccccccCCccccceeeccc--ccccccccccCCcccCHHHHhhcCCEEEEecCCCcccccc
Q psy13054 260 LKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYN--WFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQL 337 (1128)
Q Consensus 260 l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~--~~~~~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~l 337 (1128)
+.|..+ .++|.|.||+.+++...+++. +++.++ +.....+...|++.+++++.++.+|+|+.+. .+.++
T Consensus 200 l~GktV--vViG~G~IG~~va~~ak~~Ga---~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~at----G~~~~ 270 (413)
T cd00401 200 IAGKVA--VVAGYGDVGKGCAQSLRGQGA---RVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTT----GNKDI 270 (413)
T ss_pred CCCCEE--EEECCCHHHHHHHHHHHHCCC---EEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECC----CCHHH
Confidence 445544 488999999998886555443 334443 3333345667888888999999999998753 46789
Q ss_pred cCHHHHhcCCCCcEEEEecCCCc-cCHHHHHH
Q psy13054 338 IGRKQFSLMKPTAILINTSRGGL-LDQEALVE 368 (1128)
Q Consensus 338 In~~~l~~MK~gaiLINtaRG~l-VDe~AL~~ 368 (1128)
|+.+.|+.||+|++++|+|++.+ ||.++|..
T Consensus 271 i~~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 271 ITGEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred HHHHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 99999999999999999999987 88888764
No 155
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.26 E-value=0.00072 Score=75.95 Aligned_cols=78 Identities=18% Similarity=0.274 Sum_probs=67.6
Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
++.|+++.|||.+ ..|+++|.+|...|++|..++++. .++.+.+++||+|+.+++.. +++.++
T Consensus 149 ~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t------------~~L~~~~~~ADIvI~Avgk~----~lv~~~ 212 (279)
T PRK14178 149 SIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT------------ENLKAELRQADILVSAAGKA----GFITPD 212 (279)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh------------hHHHHHHhhCCEEEECCCcc----cccCHH
Confidence 5899999999999 999999999999999998887432 25889999999999999733 688887
Q ss_pred HHccCCCCcEEEEcCCCc
Q psy13054 1032 QFSLMKPTAILVNTSRGG 1049 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~ 1049 (1128)
.+ |+|+++|++|-..
T Consensus 213 ~v---k~GavVIDVgi~~ 227 (279)
T PRK14178 213 MV---KPGATVIDVGINQ 227 (279)
T ss_pred Hc---CCCcEEEEeeccc
Confidence 75 9999999998554
No 156
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=97.24 E-value=0.00059 Score=82.17 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=89.5
Q ss_pred hhHHHHHHHhhCCCEEEEEeCCCCchh-hhhc-----CCcc-cChHhhhcc---CCEEEEecCCCcccccccCHHHHccC
Q psy13054 967 IGLETAKLLKAFKVSKILYTSRRVKEE-GTAL-----GAQL-VPLDTLCAE---SDFIFVTCALTKDTEQLIGRKQFSLM 1036 (1128)
Q Consensus 967 IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~-----g~~~-~~l~ell~~---sDvV~l~lPlt~~T~~li~~~~l~~m 1036 (1128)
||+.+|++|..-|.+|.+||+...+.+ ..+. ++.. .+++|+++. +|+|++++|..+.+..++ ...+..|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence 799999999999999999998777655 3321 3444 489988875 899999999999999999 4688999
Q ss_pred CCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCC
Q psy13054 1037 KPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPE 1076 (1128)
Q Consensus 1037 k~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~E 1076 (1128)
.+|.++|+++....-|...+.+.+++..+.....=|.-.+
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~ 119 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGE 119 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCH
Confidence 9999999999999999999999999988876544444443
No 157
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=97.21 E-value=0.00054 Score=78.90 Aligned_cols=74 Identities=19% Similarity=0.190 Sum_probs=54.2
Q ss_pred CCCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCcccc------CchhhhHHHHHhhc-------CCChhhhhhhh
Q psy13054 697 MGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE------GQLFSLVYDFCRYS-------IGGVTIKRLVK 763 (1128)
Q Consensus 697 ~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~~~~------~~~~~~~~~la~~~-------pg~~~t~~l~~ 763 (1128)
..++||||||||+|++|+++|+.|+.+|++|++++++..+.. +....-+.+++++| |-... ..+++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~-~~V~~ 91 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQ-AEVYE 91 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHH-HHHHH
Confidence 458999999999999999999999999999998876533221 11111266677776 65544 77777
Q ss_pred HHHHHHhc
Q psy13054 764 KTFILSFG 771 (1128)
Q Consensus 764 ~~~l~~~~ 771 (1128)
.+++..++
T Consensus 92 ~~I~~~Lk 99 (330)
T PRK05479 92 EEIEPNLK 99 (330)
T ss_pred HHHHhcCC
Confidence 77877775
No 158
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.19 E-value=0.0012 Score=74.53 Aligned_cols=102 Identities=18% Similarity=0.276 Sum_probs=72.7
Q ss_pred CeEEEEEcChhhHHHHHHHhhCC----CEEEEEeCCCCch-h-h-hhc-CCcc-cChHhhhccCCEEEEecCCCcccccc
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFK----VSKILYTSRRVKE-E-G-TAL-GAQL-VPLDTLCAESDFIFVTCALTKDTEQL 1027 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG----~~Vi~~d~~~~~~-~-~-~~~-g~~~-~~l~ell~~sDvV~l~lPlt~~T~~l 1027 (1128)
.+|+|||+|+||+.+++.+...| .+|++|+++.... . . ... ++.. .+..+++.++|+|++++| ......+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHHHHHH
Confidence 36999999999999999998877 6888888754322 1 1 122 2332 467888999999999999 3344444
Q ss_pred cCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhc
Q psy13054 1028 IGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128)
Q Consensus 1028 i~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128)
+. +....++++..+|.+.-| +..+.|.+.+..
T Consensus 81 l~-~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~ 112 (277)
T PRK06928 81 LK-DCAPVLTPDRHVVSIAAG--VSLDDLLEITPG 112 (277)
T ss_pred HH-HHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence 42 233456778899999877 667788877643
No 159
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.18 E-value=0.001 Score=74.94 Aligned_cols=122 Identities=20% Similarity=0.204 Sum_probs=86.1
Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
++.||++.|||-| .+|+++|..|..-|+.|.+++.+. .++.+.+++||+|+.+++-. +++..+
T Consensus 154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t------------~~l~~~~~~ADIvV~AvG~p----~~i~~~ 217 (285)
T PRK14191 154 EIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT------------KDLSFYTQNADIVCVGVGKP----DLIKAS 217 (285)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc------------HHHHHHHHhCCEEEEecCCC----CcCCHH
Confidence 5899999999999 999999999999999999886432 24778999999999999733 578877
Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHH
Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~ 1111 (1128)
.+ |+|+++|++|-..+ .+|++-| ||-.++ .... --.+||=-||.-.-+..-+.+-+
T Consensus 218 ~v---k~GavVIDvGi~~~----------~~gklvG---Dvd~e~-------v~~~-a~~iTPVPGGVGpvT~a~L~~N~ 273 (285)
T PRK14191 218 MV---KKGAVVVDIGINRL----------NDGRLVG---DVDFEN-------VAPK-ASFITPVPGGVGPMTIVSLLENT 273 (285)
T ss_pred Hc---CCCcEEEEeecccc----------cCCceec---cccHHH-------Hhhh-ccEEecCCCCChHHHHHHHHHHH
Confidence 66 89999999986553 1355544 442111 0111 13489987776555554444444
Q ss_pred HHH
Q psy13054 1112 AEN 1114 (1128)
Q Consensus 1112 ~~n 1114 (1128)
++-
T Consensus 274 ~~a 276 (285)
T PRK14191 274 LIA 276 (285)
T ss_pred HHH
Confidence 433
No 160
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.17 E-value=0.00039 Score=71.92 Aligned_cols=61 Identities=23% Similarity=0.329 Sum_probs=42.9
Q ss_pred ccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCC-ccCHHHHHH
Q psy13054 304 GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGG-LLDQEALVE 368 (1128)
Q Consensus 304 ~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~-lVDe~AL~~ 368 (1128)
+...|++..+++|+++++|+|+... -.+++|..+.|++||+|+++.|++.-. =||-+.|.+
T Consensus 62 A~~dGf~v~~~~~a~~~adi~vtaT----G~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 62 AAMDGFEVMTLEEALRDADIFVTAT----GNKDVITGEHFRQMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp HHHTT-EEE-HHHHTTT-SEEEE-S----SSSSSB-HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred hhhcCcEecCHHHHHhhCCEEEECC----CCccccCHHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence 3445778889999999999988753 567899999999999999999997543 256555543
No 161
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.16 E-value=0.00079 Score=77.36 Aligned_cols=96 Identities=21% Similarity=0.277 Sum_probs=66.0
Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCC-CEEEEEeCCCCchh--hhhcCCccc---ChHhhhccCCEEEEecCCCcccccc
Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFK-VSKILYTSRRVKEE--GTALGAQLV---PLDTLCAESDFIFVTCALTKDTEQL 1027 (1128)
Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG-~~Vi~~d~~~~~~~--~~~~g~~~~---~l~ell~~sDvV~l~lPlt~~T~~l 1027 (1128)
+.|++|+|||.|.||+.+++.++..| .+|+++++...+.. +...+.... ++.+.+.++|+|+.+.|...- ..+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence 68999999999999999999999876 57778887655443 444555433 356778899999999995433 222
Q ss_pred cCHHHHccC-CCCcEEEEcCCCccc
Q psy13054 1028 IGRKQFSLM-KPTAILVNTSRGGLL 1051 (1128)
Q Consensus 1028 i~~~~l~~m-k~ga~lIN~aRG~lV 1051 (1128)
+ +..++.. +++.++|+.+...-+
T Consensus 255 ~-~~~~~~~~~~~~~viDlavPrdi 278 (311)
T cd05213 255 V-ERAMKKRSGKPRLIVDLAVPRDI 278 (311)
T ss_pred H-HHHHhhCCCCCeEEEEeCCCCCC
Confidence 2 2233322 356788877754433
No 162
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.15 E-value=0.0013 Score=76.14 Aligned_cols=106 Identities=22% Similarity=0.261 Sum_probs=73.9
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCc-----------------ccChHhhhccCCEEEEecC
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQ-----------------LVPLDTLCAESDFIFVTCA 1019 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~-----------------~~~l~ell~~sDvV~l~lP 1019 (1128)
++|+|||.|.||..+|..|...|.+|.+|++..........+.. ..+-.+.++.+|+|++++|
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~vk 82 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLVTVK 82 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEEEEec
Confidence 47999999999999999999999999999864322212222321 1222256789999999999
Q ss_pred CCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCc
Q psy13054 1020 LTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKI 1065 (1128)
Q Consensus 1020 lt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i 1065 (1128)
. +++..++ ......++++.++|.+.-| +-..+.+.+.+...++
T Consensus 83 ~-~~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~ 125 (341)
T PRK08229 83 S-AATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATV 125 (341)
T ss_pred C-cchHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcE
Confidence 4 4555555 3455667889999988654 4455667777766554
No 163
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.13 E-value=0.0014 Score=74.24 Aligned_cols=78 Identities=23% Similarity=0.305 Sum_probs=64.8
Q ss_pred ccCCCeEEEEEcCh-hhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLGN-IGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G~-IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
++.||++.|||.|. +|+++|..|...|++|.+++++. .++.+.+++||+|+++++ .+. +++.+
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t------------~~L~~~~~~aDIvI~AtG-~~~---~v~~~ 219 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT------------QNLPELVKQADIIVGAVG-KPE---LIKKD 219 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc------------hhHHHHhccCCEEEEccC-CCC---cCCHH
Confidence 58999999999998 99999999999999999887521 257778899999999997 332 67765
Q ss_pred HHccCCCCcEEEEcCCCc
Q psy13054 1032 QFSLMKPTAILVNTSRGG 1049 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~ 1049 (1128)
. +|+|+++|+++-..
T Consensus 220 ~---lk~gavViDvg~n~ 234 (283)
T PRK14192 220 W---IKQGAVVVDAGFHP 234 (283)
T ss_pred H---cCCCCEEEEEEEee
Confidence 4 68999999997554
No 164
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.13 E-value=0.00084 Score=80.41 Aligned_cols=94 Identities=21% Similarity=0.303 Sum_probs=68.4
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--hhhcCCccc---ChHhhhccCCEEEEecCCCccccc
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--GTALGAQLV---PLDTLCAESDFIFVTCALTKDTEQ 1026 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~~~~g~~~~---~l~ell~~sDvV~l~lPlt~~T~~ 1026 (1128)
.+.|++|+|||.|.||+.+++.|+..|+ +|+++++...+.. +...+.... ++.+.+.++|+|+.+.|.. ..
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~ 255 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP 255 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc
Confidence 3688999999999999999999999998 7888887665543 334443332 4567788999999987643 34
Q ss_pred ccCHHHHccC-----CCCcEEEEcCCCc
Q psy13054 1027 LIGRKQFSLM-----KPTAILVNTSRGG 1049 (1128)
Q Consensus 1027 li~~~~l~~m-----k~ga~lIN~aRG~ 1049 (1128)
+++++.++.+ +.+.++|+.+-..
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla~Pr 283 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLAVPR 283 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeCCCC
Confidence 5777777654 2456777776443
No 165
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=97.12 E-value=0.016 Score=69.44 Aligned_cols=69 Identities=16% Similarity=0.177 Sum_probs=53.6
Q ss_pred ccCCCeEEEEEc----------ChhhHHHHHHHhhCC-CEEEEEeCCCCchhh-hhcCCcccChHhhhccCCEEEEecCC
Q psy13054 953 GLKGATVGIVGL----------GNIGLETAKLLKAFK-VSKILYTSRRVKEEG-TALGAQLVPLDTLCAESDFIFVTCAL 1020 (1128)
Q Consensus 953 ~L~gktvGIIG~----------G~IG~~vA~~l~afG-~~Vi~~d~~~~~~~~-~~~g~~~~~l~ell~~sDvV~l~lPl 1020 (1128)
++.|++|+|+|+ ..-...+++.|...| .+|.+|||....... ........+++|.++.||+|+++.+-
T Consensus 317 ~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~ 396 (415)
T PRK11064 317 RASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLVDH 396 (415)
T ss_pred CcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECCCC
Confidence 578999999998 346779999999996 999999998654321 11123446899999999999999885
Q ss_pred C
Q psy13054 1021 T 1021 (1128)
Q Consensus 1021 t 1021 (1128)
.
T Consensus 397 ~ 397 (415)
T PRK11064 397 S 397 (415)
T ss_pred H
Confidence 4
No 166
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.10 E-value=0.00091 Score=75.13 Aligned_cols=103 Identities=20% Similarity=0.282 Sum_probs=68.6
Q ss_pred CeEEEEEcChhhHHHHHHHhhC--CCEEE-EEeCCCCchh--hhhcCCc-ccChHhhhccCCEEEEecCCCcccccccCH
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAF--KVSKI-LYTSRRVKEE--GTALGAQ-LVPLDTLCAESDFIFVTCALTKDTEQLIGR 1030 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~af--G~~Vi-~~d~~~~~~~--~~~~g~~-~~~l~ell~~sDvV~l~lPlt~~T~~li~~ 1030 (1128)
.+|||||+|.||+.+++.+... +++++ ++|+...+.. ....+.. +.++++++.++|+|++|.|.. .. -+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~--~~---~~ 76 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVN--AV---EE 76 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChH--HH---HH
Confidence 3799999999999999998765 56644 4565444333 2233443 347999999999999998732 21 11
Q ss_pred HHHccCCCCcEEEEcCCCcccCH---HHHHHHHhcCC
Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQ---EALVEFLKDKK 1064 (1128)
Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde---~aL~~aL~~g~ 1064 (1128)
-..+.++.|.-++.++-|.+.|. +.|.++.+++.
T Consensus 77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g 113 (265)
T PRK13304 77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENN 113 (265)
T ss_pred HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcC
Confidence 22334556666777888888774 45666666654
No 167
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.05 E-value=0.0038 Score=63.53 Aligned_cols=78 Identities=21% Similarity=0.257 Sum_probs=66.2
Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
++.||++.|+|-+ .+|+++|.+|...|++|..++.+.. ++++..++||+|+.+.+.. ++|+.+
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~------------~l~~~v~~ADIVvsAtg~~----~~i~~~ 88 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTI------------QLQSKVHDADVVVVGSPKP----EKVPTE 88 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCc------------CHHHHHhhCCEEEEecCCC----CccCHH
Confidence 5899999999995 7899999999999999998875432 6788999999999999865 568865
Q ss_pred HHccCCCCcEEEEcCCCc
Q psy13054 1032 QFSLMKPTAILVNTSRGG 1049 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~ 1049 (1128)
. +|||+++|+++...
T Consensus 89 ~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 89 W---IKPGATVINCSPTK 103 (140)
T ss_pred H---cCCCCEEEEcCCCc
Confidence 5 67999999998665
No 168
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.04 E-value=0.0035 Score=70.14 Aligned_cols=99 Identities=16% Similarity=0.191 Sum_probs=68.6
Q ss_pred CeEEEEEcChhhHHHHHHHhhCC---CEEEEEeCCCCchh-hhh-cCCcc-cChHhhhccCCEEEEecCCCcccccccCH
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFK---VSKILYTSRRVKEE-GTA-LGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGR 1030 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG---~~Vi~~d~~~~~~~-~~~-~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li~~ 1030 (1128)
++|+|||+|.||+.+++.+...| .+|.+++++..+.. ..+ .++.. .+.++++.++|+|++++|. +..+.++..
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~-~~~~~v~~~ 81 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP-QVMEEVLSE 81 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH-HHHHHHHHH
Confidence 47999999999999999998888 68888987654433 222 35544 3678889999999999983 334444322
Q ss_pred HHHccCCCCcEEEEcCCCcccCHHHHHHHHh
Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQEALVEFLK 1061 (1128)
Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~ 1061 (1128)
....+ +.++|++.-|- ..+.+.+.+.
T Consensus 82 -l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 82 -LKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred -HHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 11222 46888886653 5667776665
No 169
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.02 E-value=0.0061 Score=66.96 Aligned_cols=152 Identities=16% Similarity=0.162 Sum_probs=103.2
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCE---EEEEeCC----CCch--------h-hhhcCCc-c-cChHhhhccCCEE
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVS---KILYTSR----RVKE--------E-GTALGAQ-L-VPLDTLCAESDFI 1014 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~---Vi~~d~~----~~~~--------~-~~~~g~~-~-~~l~ell~~sDvV 1014 (1128)
.+.++++.|+|.|..|+.+|+.|...|++ ++++|++ ..+. . ....+.. . .++.+.++++|+|
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvl 101 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVF 101 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEE
Confidence 36789999999999999999999999985 8889887 3332 1 1222111 1 3677888999999
Q ss_pred EEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCC-ceEEEEeccCCCCCCCCCccccCCCeEEC
Q psy13054 1015 FVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKK-IGGAGLDVMIPEPLPADHPLVQLDNCVLT 1093 (1128)
Q Consensus 1015 ~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~-i~gaaLDV~e~EPl~~~~pL~~~pNvilT 1093 (1128)
+.+.| .++++++.++.|+++.++...+.. ..|.-+.++.+.|- |..-|. +.+ ..+.-|+++=
T Consensus 102 IgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~ga~i~a~G~-----~~~-----~~Q~nn~~~f 164 (226)
T cd05311 102 IGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAGADIVATGR-----SDF-----PNQVNNVLGF 164 (226)
T ss_pred EeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcCCcEEEeCC-----CCC-----ccccceeeec
Confidence 99887 478999999999999998888843 34444444444443 333331 222 3367799999
Q ss_pred CCCCC-----CcHHHHHHHHHHHHHHHHHHHcC
Q psy13054 1094 PHTSS-----ATKAVRDEKSSTSAENIIRGYKG 1121 (1128)
Q Consensus 1094 PHiag-----~t~e~~~~~~~~~~~nl~~~l~G 1121 (1128)
|=++- ......++|...+++.|..+..-
T Consensus 165 Pg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~ 197 (226)
T cd05311 165 PGIFRGALDVRATKITEEMKLAAAEAIADLAEE 197 (226)
T ss_pred chhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCc
Confidence 97653 22334466777777777666543
No 170
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.02 E-value=0.00078 Score=69.63 Aligned_cols=90 Identities=17% Similarity=0.282 Sum_probs=62.2
Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhh--c------------CCcc-cChHhhhccCCEEEEecCCC
Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTA--L------------GAQL-VPLDTLCAESDFIFVTCALT 1021 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~--~------------g~~~-~~l~ell~~sDvV~l~lPlt 1021 (1128)
+|+|+|.|+.|.++|..|...|.+|..|.++....+ ... . .+.. .+++++++.+|+|++++|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 589999999999999999999999999986543222 111 0 1111 37899999999999999943
Q ss_pred cccccccCHHHHccCCCCcEEEEcCCCc
Q psy13054 1022 KDTEQLIGRKQFSLMKPTAILVNTSRGG 1049 (1128)
Q Consensus 1022 ~~T~~li~~~~l~~mk~ga~lIN~aRG~ 1049 (1128)
..+.++ ++....++++..+|++..|=
T Consensus 81 -~~~~~~-~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 81 -AHREVL-EQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -GHHHHH-HHHTTTSHTT-EEEETS-SE
T ss_pred -HHHHHH-HHHhhccCCCCEEEEecCCc
Confidence 344444 34555668899999998774
No 171
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.02 E-value=0.0013 Score=69.94 Aligned_cols=144 Identities=17% Similarity=0.212 Sum_probs=81.6
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcC---------------------Ccc-cChHhhhccCCEE
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALG---------------------AQL-VPLDTLCAESDFI 1014 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g---------------------~~~-~~l~ell~~sDvV 1014 (1128)
++|+|||+|.+|..+|..+...|.+|++||....+.+....| ... .+.++.+++||++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 479999999999999999999999999999776533311111 112 2567778999999
Q ss_pred EEecCCCcccccccC--------HHHHccCCCCcEEEEcCCCcccCHHHHH-HHHhcCCceEEEEe-ccCCCCCCCCCc-
Q psy13054 1015 FVTCALTKDTEQLIG--------RKQFSLMKPTAILVNTSRGGLLDQEALV-EFLKDKKIGGAGLD-VMIPEPLPADHP- 1083 (1128)
Q Consensus 1015 ~l~lPlt~~T~~li~--------~~~l~~mk~ga~lIN~aRG~lVde~aL~-~aL~~g~i~gaaLD-V~e~EPl~~~~p- 1083 (1128)
++|+|....-.+-.| ....+.++++.++|.-|.-.+=.++.++ ..|++..-...-++ +|-+|=+.+.+.
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~ 160 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAI 160 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHH
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcc
Confidence 999994333322222 2455678899999999999987777554 44443221101111 267787766654
Q ss_pred --cccCCCeEECCCCCCCcHHHHH
Q psy13054 1084 --LVQLDNCVLTPHTSSATKAVRD 1105 (1128)
Q Consensus 1084 --L~~~pNvilTPHiag~t~e~~~ 1105 (1128)
+...|.|++ |.+.+..+
T Consensus 161 ~d~~~~~rvV~-----G~~~~~~~ 179 (185)
T PF03721_consen 161 EDFRNPPRVVG-----GCDDESAE 179 (185)
T ss_dssp HHHHSSSEEEE-----EESSHHHH
T ss_pred hhccCCCEEEE-----eCCcHHHH
Confidence 445566654 45555444
No 172
>PLN00203 glutamyl-tRNA reductase
Probab=96.97 E-value=0.0015 Score=79.87 Aligned_cols=95 Identities=16% Similarity=0.222 Sum_probs=70.3
Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--hhhc-CC--cc---cChHhhhccCCEEEEecCCCccc
Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--GTAL-GA--QL---VPLDTLCAESDFIFVTCALTKDT 1024 (1128)
Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~~~~-g~--~~---~~l~ell~~sDvV~l~lPlt~~T 1024 (1128)
+.+++|+|||.|.||+.+++.|...|+ +|+++++...+.. .... +. .. .++.+.+.++|+|+.+.| ..
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~---s~ 340 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTS---SE 340 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccC---CC
Confidence 779999999999999999999999997 6889987766544 2222 22 12 256678999999999765 44
Q ss_pred ccccCHHHHccCCCC-------cEEEEcCCCccc
Q psy13054 1025 EQLIGRKQFSLMKPT-------AILVNTSRGGLL 1051 (1128)
Q Consensus 1025 ~~li~~~~l~~mk~g-------a~lIN~aRG~lV 1051 (1128)
..+|.++.++.|+++ -+||+.|=..=|
T Consensus 341 ~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdI 374 (519)
T PLN00203 341 TPLFLKEHVEALPPASDTVGGKRLFVDISVPRNV 374 (519)
T ss_pred CCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCC
Confidence 557889998887432 367777655433
No 173
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.95 E-value=0.0024 Score=70.44 Aligned_cols=104 Identities=15% Similarity=0.184 Sum_probs=68.3
Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCC---CE-EEEEeCCC-Cchh--hhhcCCcc-cChHhhhccCCEEEEecCCCccccc
Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFK---VS-KILYTSRR-VKEE--GTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQ 1026 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG---~~-Vi~~d~~~-~~~~--~~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~ 1026 (1128)
...+|||||.|++|+.+++.+..-| .+ +++++++. .+.. ....++.. .++++++.++|+|++++|.. ..+.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~ 81 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEE 81 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHH
Confidence 3578999999999999999987655 33 56676543 2222 22345543 47889999999999999943 3333
Q ss_pred ccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcC
Q psy13054 1027 LIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128)
Q Consensus 1027 li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128)
++. .++...++.++|+++=| ++.+.|.+.+..+
T Consensus 82 v~~--~l~~~~~~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 82 LLA--ELSPLLSNQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred HHH--HHHhhccCCEEEEECCC--CCHHHHHHHcCCC
Confidence 332 12222236799999766 5555677666543
No 174
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.94 E-value=0.0036 Score=70.61 Aligned_cols=121 Identities=20% Similarity=0.271 Sum_probs=87.4
Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
++.||++.|||-+ .+|+++|.+|..-|+.|.+++++. .++.+.+++||+|+.+++-. ++|+.+
T Consensus 155 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t------------~~l~~~~~~ADIvI~AvG~p----~~i~~~ 218 (284)
T PRK14190 155 DISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT------------KNLAELTKQADILIVAVGKP----KLITAD 218 (284)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecCCC----CcCCHH
Confidence 5899999999996 689999999999999999886432 26889999999999999743 589987
Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHH
Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~ 1111 (1128)
.+ |+|+++|++|.-.+. +|++.| ||-..+ ... ---.+||--||.-.-+..-+.+-+
T Consensus 219 ~i---k~gavVIDvGi~~~~----------~gkl~G---Dvd~e~-------v~~-~a~~iTPVPGGVGpvT~a~L~~N~ 274 (284)
T PRK14190 219 MV---KEGAVVIDVGVNRLE----------NGKLCG---DVDFDN-------VKE-KASYITPVPGGVGPMTITMLMHNT 274 (284)
T ss_pred Hc---CCCCEEEEeeccccC----------CCCeec---cCcHHH-------Hhh-hceEecCCCCCChHHHHHHHHHHH
Confidence 77 799999999977642 345544 552111 111 124589988887665554444444
Q ss_pred HH
Q psy13054 1112 AE 1113 (1128)
Q Consensus 1112 ~~ 1113 (1128)
++
T Consensus 275 ~~ 276 (284)
T PRK14190 275 VE 276 (284)
T ss_pred HH
Confidence 33
No 175
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=96.93 E-value=0.0051 Score=73.70 Aligned_cols=94 Identities=19% Similarity=0.261 Sum_probs=64.2
Q ss_pred ccCCCeEEEEEc----------ChhhHHHHHHHhhCCCEEEEEeCCCCchhh-hhcCCcccChHh-hhccCCEEEEecCC
Q psy13054 953 GLKGATVGIVGL----------GNIGLETAKLLKAFKVSKILYTSRRVKEEG-TALGAQLVPLDT-LCAESDFIFVTCAL 1020 (1128)
Q Consensus 953 ~L~gktvGIIG~----------G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~-~~~g~~~~~l~e-ll~~sDvV~l~lPl 1020 (1128)
.+.|++|+|+|+ ..-+..+++.|...|.+|.+|||....... ...+.. ++++ .++.||+|+++..-
T Consensus 311 ~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~--~~~~~~~~~ad~vvi~t~h 388 (425)
T PRK15182 311 NVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGII--PVSEVKSSHYDAIIVAVGH 388 (425)
T ss_pred CCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcc--cchhhhhcCCCEEEEccCC
Confidence 478999999999 456789999999999999999998544332 222321 2223 46789999999885
Q ss_pred CcccccccCHHHHc-cCCCCcEEEEcCCCccc
Q psy13054 1021 TKDTEQLIGRKQFS-LMKPTAILVNTSRGGLL 1051 (1128)
Q Consensus 1021 t~~T~~li~~~~l~-~mk~ga~lIN~aRG~lV 1051 (1128)
.+ -+. ++.+.+. .||...++|+ +|+-+.
T Consensus 389 ~~-f~~-~~~~~~~~~~~~~~~iiD-~r~~~~ 417 (425)
T PRK15182 389 QQ-FKQ-MGSEDIRGFGKDKHVLYD-LKYVLP 417 (425)
T ss_pred HH-hhc-CCHHHHHHhcCCCCEEEE-CCCCCC
Confidence 43 333 4555554 4554568888 466553
No 176
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.93 E-value=0.0015 Score=69.27 Aligned_cols=112 Identities=18% Similarity=0.242 Sum_probs=73.2
Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-h----hh-------cC-------------Ccc-cChHhhhccC
Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-G----TA-------LG-------------AQL-VPLDTLCAES 1011 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~----~~-------~g-------------~~~-~~l~ell~~s 1011 (1128)
+|+|||.|.||+.+|..+...|++|.+||....... . .. .+ +.. .+++++. .+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 699999999999999999999999999998765322 0 00 11 122 3788888 99
Q ss_pred CEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEecc
Q psy13054 1012 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVM 1073 (1128)
Q Consensus 1012 DvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~ 1073 (1128)
|+|+=++|..-+.+.=+=++.-+.++++++|...+.+ +....|...+.. +=+..++=.|
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~~-p~R~ig~Hf~ 138 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALSR-PERFIGMHFF 138 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSST-GGGEEEEEE-
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccCc-CceEEEEecc
Confidence 9999999988887765555666777899998766444 455666666642 2234444444
No 177
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.91 E-value=0.0012 Score=71.06 Aligned_cols=37 Identities=30% Similarity=0.390 Sum_probs=34.5
Q ss_pred CCCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCC
Q psy13054 697 MGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128)
Q Consensus 697 ~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128)
.+++|||++|+|+|++|+.+|++|..+|++|+++|..
T Consensus 24 ~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 24 DSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4589999999999999999999999999999999874
No 178
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=96.90 E-value=0.00095 Score=75.88 Aligned_cols=68 Identities=19% Similarity=0.227 Sum_probs=56.7
Q ss_pred CCccc-CHHHHhhcCCEEEEecCCCcccccccCH--HHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCe
Q psy13054 308 GAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGR--KQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKI 375 (1128)
Q Consensus 308 g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn~--~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~I 375 (1128)
++..+ +++|++++||+|++++|-++.++.++.. ..++.+++|.++||++........++.+.+++..+
T Consensus 45 g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~ 115 (296)
T PRK11559 45 GAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGI 115 (296)
T ss_pred CCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 44443 7899999999999999998888887643 36788999999999999998888899999987644
No 179
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.90 E-value=0.0026 Score=71.89 Aligned_cols=110 Identities=21% Similarity=0.229 Sum_probs=70.6
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCC-CEEEEEeCCCCchh--hhhcC----Ccc-cChHhhhccCCEEEEecCCCccc
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFK-VSKILYTSRRVKEE--GTALG----AQL-VPLDTLCAESDFIFVTCALTKDT 1024 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG-~~Vi~~d~~~~~~~--~~~~g----~~~-~~l~ell~~sDvV~l~lPlt~~T 1024 (1128)
.+.++++.|+|.|.+|++++..|...| .+|.+++++..+.+ ..... +.. .++.+.+.++|+|++++|..-..
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~ 199 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSG 199 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCC
Confidence 367899999999999999999999999 68999987665543 22221 111 23457788999999999965432
Q ss_pred ccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcC
Q psy13054 1025 EQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128)
Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128)
..-...-.+..++++++++++.-.. ..+.=|..|-+.|
T Consensus 200 ~~~~~~~~~~~l~~~~~v~DivY~P-~~T~ll~~A~~~G 237 (278)
T PRK00258 200 ELPLPPLPLSLLRPGTIVYDMIYGP-LPTPFLAWAKAQG 237 (278)
T ss_pred CCCCCCCCHHHcCCCCEEEEeecCC-CCCHHHHHHHHCc
Confidence 1101111234456777777776533 3344334444443
No 180
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.89 E-value=0.0093 Score=69.11 Aligned_cols=142 Identities=19% Similarity=0.202 Sum_probs=97.1
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhh--------------------cC-CcccChHhhhccCCEEE
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTA--------------------LG-AQLVPLDTLCAESDFIF 1015 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~--------------------~g-~~~~~l~ell~~sDvV~ 1015 (1128)
.+|||||+|.||.++|-.+..-|.+|++||-+..+-+... .| .+..+=-+.++.||+++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~i 89 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFI 89 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEE
Confidence 7899999999999999999999999999998765433111 11 12222223455999999
Q ss_pred EecCCCccccc-------ccC--HHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcC--CceEEEEec---cCCCCCCCC
Q psy13054 1016 VTCALTKDTEQ-------LIG--RKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK--KIGGAGLDV---MIPEPLPAD 1081 (1128)
Q Consensus 1016 l~lPlt~~T~~-------li~--~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g--~i~gaaLDV---~e~EPl~~~ 1081 (1128)
+|+| ||-+.+ +.+ +..-..||+|.++|==|.-..=.++.++.-|.+. .+ .+.-|. |.+|-..+.
T Consensus 90 I~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL-~~~~Df~laysPERv~PG 167 (436)
T COG0677 90 ICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGL-KFGEDFYLAYSPERVLPG 167 (436)
T ss_pred EEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCC-cccceeeEeeCccccCCC
Confidence 9999 554442 111 1345678999999999999888899999887664 12 122353 567765556
Q ss_pred Ccccc---CCCeEECCCCCCCcHHHHH
Q psy13054 1082 HPLVQ---LDNCVLTPHTSSATKAVRD 1105 (1128)
Q Consensus 1082 ~pL~~---~pNvilTPHiag~t~e~~~ 1105 (1128)
+.+.. .|.| +||.|+.+.+
T Consensus 168 ~~~~el~~~~kV-----IgG~tp~~~e 189 (436)
T COG0677 168 NVLKELVNNPKV-----IGGVTPKCAE 189 (436)
T ss_pred chhhhhhcCCce-----eecCCHHHHH
Confidence 65555 4444 5777776654
No 181
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=96.83 E-value=0.0013 Score=74.80 Aligned_cols=64 Identities=19% Similarity=0.286 Sum_probs=54.8
Q ss_pred cCHHHHhhcCCEEEEecCCCccccccc-CH-HHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCe
Q psy13054 312 VPLDTLCAESDFIFVTCALTKDTEQLI-GR-KQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKI 375 (1128)
Q Consensus 312 vsLdeLl~~SDiVslh~PLT~~T~~lI-n~-~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~I 375 (1128)
.+.++++++||+|++++|-++.++.++ +. ..++.+++|.++||+++....+..+|.+.+++..+
T Consensus 47 ~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~ 112 (291)
T TIGR01505 47 ETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGI 112 (291)
T ss_pred CCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 378899999999999999888887764 43 35788999999999999998888999999998643
No 182
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=96.80 E-value=0.002 Score=70.26 Aligned_cols=91 Identities=12% Similarity=0.089 Sum_probs=62.3
Q ss_pred eEEEEE-cChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhh--------cCC----cccChHhhhccCCEEEEecCCCcc
Q psy13054 958 TVGIVG-LGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTA--------LGA----QLVPLDTLCAESDFIFVTCALTKD 1023 (1128)
Q Consensus 958 tvGIIG-~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~--------~g~----~~~~l~ell~~sDvV~l~lPlt~~ 1023 (1128)
+|+||| .|+||+.+++.|...|.+|++++++.++.. ... .+. ...+..+.++++|+|++++|.. .
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~-~ 80 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD-H 80 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH-H
Confidence 699997 999999999999999999999976554432 111 121 1236678899999999999943 3
Q ss_pred cccccCHHHHccCCCCcEEEEcCCCccc
Q psy13054 1024 TEQLIGRKQFSLMKPTAILVNTSRGGLL 1051 (1128)
Q Consensus 1024 T~~li~~~~l~~mk~ga~lIN~aRG~lV 1051 (1128)
...++. +.-..++ +.++|++.-|--.
T Consensus 81 ~~~~l~-~l~~~l~-~~vvI~~~ngi~~ 106 (219)
T TIGR01915 81 VLKTLE-SLRDELS-GKLVISPVVPLAS 106 (219)
T ss_pred HHHHHH-HHHHhcc-CCEEEEeccCcee
Confidence 333332 2212233 5899999777443
No 183
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=96.75 E-value=0.0032 Score=72.49 Aligned_cols=36 Identities=33% Similarity=0.433 Sum_probs=32.2
Q ss_pred CCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCC
Q psy13054 699 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128)
Q Consensus 699 l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128)
|+||+|||||+|++|+++|+.++.+|+++++++++.
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~ 36 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKG 36 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcC
Confidence 578999999999999999999999999988776544
No 184
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=96.73 E-value=0.0055 Score=68.63 Aligned_cols=98 Identities=18% Similarity=0.267 Sum_probs=75.4
Q ss_pred CeEEEEEcChhhHHHHHHHhhCC----CEEEEEeCCCCchh--hhhcCCc-ccChHhhhccCCEEEEecCCCcccccccC
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFK----VSKILYTSRRVKEE--GTALGAQ-LVPLDTLCAESDFIFVTCALTKDTEQLIG 1029 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG----~~Vi~~d~~~~~~~--~~~~g~~-~~~l~ell~~sDvV~l~lPlt~~T~~li~ 1029 (1128)
++|||||+|+||++++.-+..-| -+|++.++..++.. ..++|+. ..+..++..++|+|++++. |+ .=
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq----~~ 75 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQ----DL 75 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hH----hH
Confidence 57999999999999999999888 57887776666553 4566666 3467789999999999998 32 12
Q ss_pred HHHHccCC---CCcEEEEcCCCcccCHHHHHHHHhc
Q psy13054 1030 RKQFSLMK---PTAILVNTSRGGLLDQEALVEFLKD 1062 (1128)
Q Consensus 1030 ~~~l~~mk---~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128)
.+.+..++ ++.++|.++=| |..+.|.+.|.+
T Consensus 76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~~ 109 (266)
T COG0345 76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLGG 109 (266)
T ss_pred HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcCC
Confidence 46677776 69999999877 566777777653
No 185
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=96.73 E-value=0.0047 Score=70.27 Aligned_cols=105 Identities=12% Similarity=0.189 Sum_probs=72.5
Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCc--------------ccChHhhhccCCEEEEecCCCc
Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQ--------------LVPLDTLCAESDFIFVTCALTK 1022 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~--------------~~~l~ell~~sDvV~l~lPlt~ 1022 (1128)
+|+|||.|.||..+|..|...|.+|.+|++ ..+.+ ..+.+.. ..+.+++.+.+|+|++++|. .
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~-~ 79 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA-Y 79 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc-c
Confidence 699999999999999999998999999986 33222 2222221 12455667899999999994 3
Q ss_pred ccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCce
Q psy13054 1023 DTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIG 1066 (1128)
Q Consensus 1023 ~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ 1066 (1128)
++..++ +..-...+++.++|.+.-| +-.++.+.+.+.+.++.
T Consensus 80 ~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~ 121 (305)
T PRK12921 80 QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL 121 (305)
T ss_pred CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence 444444 2333445678889888666 44567777777665544
No 186
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=96.73 E-value=0.0088 Score=63.73 Aligned_cols=90 Identities=16% Similarity=0.103 Sum_probs=65.8
Q ss_pred ccccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhh--hhcCCcc---cC----hHhhhccCCEEEEecCC
Q psy13054 951 IMGLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEG--TALGAQL---VP----LDTLCAESDFIFVTCAL 1020 (1128)
Q Consensus 951 ~~~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~--~~~g~~~---~~----l~ell~~sDvV~l~lPl 1020 (1128)
..++.||++.|||-+ .+|+++|.+|..-|++|.++|.+...... ....... .+ +.+.+++||||+.+++-
T Consensus 57 ~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~ 136 (197)
T cd01079 57 GNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPS 136 (197)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCC
Confidence 347999999999997 57999999999999999999643321110 0000111 12 78999999999999994
Q ss_pred Ccccccc-cCHHHHccCCCCcEEEEcCC
Q psy13054 1021 TKDTEQL-IGRKQFSLMKPTAILVNTSR 1047 (1128)
Q Consensus 1021 t~~T~~l-i~~~~l~~mk~ga~lIN~aR 1047 (1128)
. ++ +..+. .|+|+++||+|-
T Consensus 137 ~----~~~i~~d~---ik~GavVIDVGi 157 (197)
T cd01079 137 P----NYKVPTEL---LKDGAICINFAS 157 (197)
T ss_pred C----CCccCHHH---cCCCcEEEEcCC
Confidence 4 45 77654 479999999983
No 187
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.69 E-value=0.008 Score=68.26 Aligned_cols=106 Identities=17% Similarity=0.218 Sum_probs=73.1
Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc------------cChHhhhccCCEEEEecCCCccc
Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL------------VPLDTLCAESDFIFVTCALTKDT 1024 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~------------~~l~ell~~sDvV~l~lPlt~~T 1024 (1128)
+|+|||.|.||..+|..|...|.+|.+++++....+ ....|... .+.+++ +.+|+|++++|. .++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~-~~~ 79 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKA-YQL 79 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEeccc-ccH
Confidence 699999999999999999999999999987554433 22234321 235555 899999999994 445
Q ss_pred ccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE
Q psy13054 1025 EQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128)
Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128)
..++. ..-..+.+++.+|...-| +-.++.+.+.+...++.+
T Consensus 80 ~~~~~-~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~ 120 (304)
T PRK06522 80 PAALP-SLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLG 120 (304)
T ss_pred HHHHH-HHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEE
Confidence 54442 333445677888888777 334566666666655543
No 188
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.68 E-value=0.0084 Score=67.63 Aligned_cols=125 Identities=20% Similarity=0.285 Sum_probs=86.7
Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
++.||++.|||-+ .+|+++|.+|..-|+.|.++.++. .++.+..++||||+.+++-. ++|+.+
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T------------~~l~~~~~~ADIvI~AvG~~----~~i~~~ 217 (284)
T PRK14170 154 QIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT------------KDLPQVAKEADILVVATGLA----KFVKKD 217 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecCCc----CccCHH
Confidence 5899999999997 579999999999999999886543 25889999999999999854 578765
Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHH
Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~ 1111 (1128)
.+ |+|+++|++|--.+. +|++.| ||-.++- ... --.+||==||.-.-+..-+.+-+
T Consensus 218 ~v---k~GavVIDvGin~~~----------~gkl~G---Dvdfe~~-------~~~-a~~iTPVPGGVGpvT~a~L~~N~ 273 (284)
T PRK14170 218 YI---KPGAIVIDVGMDRDE----------NNKLCG---DVDFDDV-------VEE-AGFITPVPGGVGPMTITMLLANT 273 (284)
T ss_pred Hc---CCCCEEEEccCcccC----------CCCeec---ccchHHH-------Hhh-ccEecCCCCChHHHHHHHHHHHH
Confidence 54 699999999866531 355544 4421110 111 13578887776655554444444
Q ss_pred HHHHHH
Q psy13054 1112 AENIIR 1117 (1128)
Q Consensus 1112 ~~nl~~ 1117 (1128)
++-.++
T Consensus 274 ~~a~~~ 279 (284)
T PRK14170 274 LKAAKR 279 (284)
T ss_pred HHHHHH
Confidence 433333
No 189
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.66 E-value=0.0032 Score=70.58 Aligned_cols=93 Identities=17% Similarity=0.285 Sum_probs=73.6
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-h-hhcCCc-------ccChHhhhccCCEEEEe--cCCC
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-G-TALGAQ-------LVPLDTLCAESDFIFVT--CALT 1021 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~-~~~g~~-------~~~l~ell~~sDvV~l~--lPlt 1021 (1128)
+...-+|.|||.|-+|..-|+++.++|.+|.+.|.+.++.. . ...+.+ ...+++.+.++|+|+-. +|..
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 66778899999999999999999999999999998766543 1 122222 12588999999999954 4533
Q ss_pred cccccccCHHHHccCCCCcEEEEcC
Q psy13054 1022 KDTEQLIGRKQFSLMKPTAILVNTS 1046 (1128)
Q Consensus 1022 ~~T~~li~~~~l~~mk~ga~lIN~a 1046 (1128)
..-.++.++.+++||||+++|+++
T Consensus 245 -kaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 245 -KAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred -CCceehhHHHHHhcCCCcEEEEEE
Confidence 344588999999999999999995
No 190
>KOG2380|consensus
Probab=96.66 E-value=0.0025 Score=71.79 Aligned_cols=134 Identities=16% Similarity=0.275 Sum_probs=94.3
Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc-cChHhhh-ccCCEEEEecCCCcccccccCHHH
Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL-VPLDTLC-AESDFIFVTCALTKDTEQLIGRKQ 1032 (1128)
Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~-~~l~ell-~~sDvV~l~lPlt~~T~~li~~~~ 1032 (1128)
-++|||||+|++|+-.|+.+-..|..|+.+++. +-.. +...|... ..+.++. +++|+|.+|+. ...+..++-.--
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRs-dyssaa~~yg~~~ft~lhdlcerhpDvvLlcts-ilsiekilatyp 129 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRS-DYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTS-ILSIEKILATYP 129 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcc-hhHHHHHHhcccccccHHHHHhcCCCEEEEEeh-hhhHHHHHHhcC
Confidence 467999999999999999999999998887644 4443 55566654 3566665 56999999887 344555554445
Q ss_pred HccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCC----CCCCCccccCCCeEECCCCC
Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEP----LPADHPLVQLDNCVLTPHTS 1097 (1128)
Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EP----l~~~~pL~~~pNvilTPHia 1097 (1128)
++++|.|++|+.+-.-....-+++.+-|.+. .|....-| -..++.+-.+|=|+.--.++
T Consensus 130 fqrlrrgtlfvdvlSvKefek~lfekYLPkd------fDIlctHpmfGPksvnh~wqglpfVydkvRig 192 (480)
T KOG2380|consen 130 FQRLRRGTLFVDVLSVKEFEKELFEKYLPKD------FDILCTHPMFGPKSVNHEWQGLPFVYDKVRIG 192 (480)
T ss_pred chhhccceeEeeeeecchhHHHHHHHhCccc------cceEeecCCcCCCcCCCccccCceEEEEeecc
Confidence 7789999999999888888788888877553 23333333 23355566677666554444
No 191
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.65 E-value=0.0057 Score=68.86 Aligned_cols=78 Identities=22% Similarity=0.258 Sum_probs=64.8
Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
++.||++.|||-| .+|+++|.+|..-|+.|.++..+. .++.+..++||+|+.++.-. +++.++
T Consensus 154 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T------------~~l~~~~~~ADIvV~AvGkp----~~i~~~ 217 (281)
T PRK14183 154 DVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT------------KDLKAHTKKADIVIVGVGKP----NLITED 217 (281)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------cCHHHHHhhCCEEEEecCcc----cccCHH
Confidence 6899999999999 899999999999999998775432 25788999999999999743 578765
Q ss_pred HHccCCCCcEEEEcCCCc
Q psy13054 1032 QFSLMKPTAILVNTSRGG 1049 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~ 1049 (1128)
.+ |+|+++|++|--.
T Consensus 218 ~v---k~gavvIDvGin~ 232 (281)
T PRK14183 218 MV---KEGAIVIDIGINR 232 (281)
T ss_pred Hc---CCCcEEEEeeccc
Confidence 54 6999999998444
No 192
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=96.62 E-value=0.00079 Score=79.51 Aligned_cols=90 Identities=21% Similarity=0.181 Sum_probs=63.0
Q ss_pred hccCCceeeeeeCCCCCCCCccccccCCccccceeeccccc-------------ccccccccCCcccCHHHHhhcCCEEE
Q psy13054 259 SLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWF-------------ERSNGTALGAQLVPLDTLCAESDFIF 325 (1128)
Q Consensus 259 ~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~-------------~~~~~~~~g~~~vsLdeLl~~SDiVs 325 (1128)
.++|..+. ++|+|.+|+.-|. + ++..|.+.. +.+.+.+-|++..+++|++++||+|+
T Consensus 33 ~LkgKtIa--IIGyGSqG~AqAl---N-----LrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVv 102 (487)
T PRK05225 33 YLKGKKIV--IVGCGAQGLNQGL---N-----MRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVI 102 (487)
T ss_pred HhCCCEEE--EEccCHHHHHHhC---C-----CccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEE
Confidence 35565543 8899999985443 2 223333322 11122234777789999999999999
Q ss_pred EecCCCcccccccCHHHHhcCCCCcEEEEecCCCcc
Q psy13054 326 VTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLL 361 (1128)
Q Consensus 326 lh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lV 361 (1128)
+.+|.+ + ++.|+++.+..||+|++|. -|.|=-|
T Consensus 103 iLlPDt-~-q~~v~~~i~p~LK~Ga~L~-fsHGFni 135 (487)
T PRK05225 103 NLTPDK-Q-HSDVVRAVQPLMKQGAALG-YSHGFNI 135 (487)
T ss_pred EcCChH-H-HHHHHHHHHhhCCCCCEEE-ecCCcee
Confidence 999999 4 8999999999999999875 4566543
No 193
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.58 E-value=0.0075 Score=68.16 Aligned_cols=130 Identities=22% Similarity=0.287 Sum_probs=90.1
Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
++.||++.|||-+ .+|+++|.+|..-|+.|.++.++.. ++.+..++||+|++++.-. ++++++
T Consensus 152 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T~------------~l~~~~~~ADIvIsAvGkp----~~i~~~ 215 (287)
T PRK14173 152 PLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQ------------DLPAVTRRADVLVVAVGRP----HLITPE 215 (287)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCCC------------CHHHHHhhCCEEEEecCCc----CccCHH
Confidence 5899999999996 6799999999999999988865432 5789999999999999843 678876
Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCC--ceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHH
Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKK--IGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSS 1109 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~--i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~ 1109 (1128)
.+ |+|+++|++|--.+.+ ++|+ +.| ||- .+- .... -.+||==||.-.-+..-+.+
T Consensus 216 ~v---k~GavVIDVGin~~~~--------~~gk~~l~G---DVd-~~v-------~~~a-~~iTPVPGGVGp~T~a~L~~ 272 (287)
T PRK14173 216 MV---RPGAVVVDVGINRVGG--------NGGRDILTG---DVH-PEV-------AEVA-GALTPVPGGVGPMTVAMLMA 272 (287)
T ss_pred Hc---CCCCEEEEccCccccC--------CCCceeeec---ccc-HhH-------HhhC-cEEecCCCChhHHHHHHHHH
Confidence 65 7999999999766432 1344 433 553 111 1111 24888877765555544444
Q ss_pred HHHHHHHHHHcC
Q psy13054 1110 TSAENIIRGYKG 1121 (1128)
Q Consensus 1110 ~~~~nl~~~l~G 1121 (1128)
-++.-.++...|
T Consensus 273 N~~~a~~~~~~~ 284 (287)
T PRK14173 273 NTVIAALRRRGG 284 (287)
T ss_pred HHHHHHHHHccC
Confidence 444444444444
No 194
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.57 E-value=0.0073 Score=68.09 Aligned_cols=78 Identities=19% Similarity=0.274 Sum_probs=65.4
Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
++.||++.|||-+ .+|+++|.+|..-|+.|.++.++. .++.+..++||+|+.++.-. ++|+++
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T------------~nl~~~~~~ADIvIsAvGkp----~~i~~~ 217 (282)
T PRK14166 154 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------KDLSLYTRQADLIIVAAGCV----NLLRSD 217 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCCc----CccCHH
Confidence 5899999999997 579999999999999999886543 25889999999999999844 578876
Q ss_pred HHccCCCCcEEEEcCCCc
Q psy13054 1032 QFSLMKPTAILVNTSRGG 1049 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~ 1049 (1128)
. .|+|+++|++|--.
T Consensus 218 ~---vk~GavVIDvGin~ 232 (282)
T PRK14166 218 M---VKEGVIVVDVGINR 232 (282)
T ss_pred H---cCCCCEEEEecccc
Confidence 4 47999999998444
No 195
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.57 E-value=0.011 Score=66.41 Aligned_cols=78 Identities=21% Similarity=0.386 Sum_probs=65.6
Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
++.||++.|||-+ .+|+++|.+|..-|+.|.+++++. .++.+..++||+|+.+++-. ++|+++
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T------------~~l~~~~~~ADIvIsAvGkp----~~i~~~ 218 (278)
T PRK14172 155 DIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT------------KNLKEVCKKADILVVAIGRP----KFIDEE 218 (278)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCCc----CccCHH
Confidence 5899999999996 579999999999999999887543 25889999999999999854 578876
Q ss_pred HHccCCCCcEEEEcCCCc
Q psy13054 1032 QFSLMKPTAILVNTSRGG 1049 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~ 1049 (1128)
. .|+|+++|++|--.
T Consensus 219 ~---ik~gavVIDvGin~ 233 (278)
T PRK14172 219 Y---VKEGAIVIDVGTSS 233 (278)
T ss_pred H---cCCCcEEEEeeccc
Confidence 5 57999999997544
No 196
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.55 E-value=0.0076 Score=67.96 Aligned_cols=121 Identities=21% Similarity=0.282 Sum_probs=85.6
Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
++.||++.|||-+ .+|+++|.+|..-|+.|.++.++.. ++.+..++||||+++++-. ++|+.+
T Consensus 153 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T~------------~l~~~~~~ADIvI~AvG~p----~~i~~~ 216 (282)
T PRK14169 153 DVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTR------------NLKQLTKEADILVVAVGVP----HFIGAD 216 (282)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCCC------------CHHHHHhhCCEEEEccCCc----CccCHH
Confidence 5899999999996 5799999999999999988865432 5889999999999999854 578876
Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHH
Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~ 1111 (1128)
. .|+|+++|++|--.+. +|++.| ||-.++- .. ---.+||==||.-.-+..-+.+-+
T Consensus 217 ~---vk~GavVIDvGin~~~----------~gkl~G---DVd~~~v-------~~-~a~~iTPVPGGVGp~T~a~L~~N~ 272 (282)
T PRK14169 217 A---VKPGAVVIDVGISRGA----------DGKLLG---DVDEAAV-------AP-IASAITPVPGGVGPMTIASLMAQT 272 (282)
T ss_pred H---cCCCcEEEEeeccccC----------CCCeee---cCcHHHH-------Hh-hccEecCCCCCcHHHHHHHHHHHH
Confidence 4 5799999999865432 355544 5532211 11 123588877776655554444444
Q ss_pred HH
Q psy13054 1112 AE 1113 (1128)
Q Consensus 1112 ~~ 1113 (1128)
++
T Consensus 273 ~~ 274 (282)
T PRK14169 273 VT 274 (282)
T ss_pred HH
Confidence 43
No 197
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=96.54 E-value=0.0052 Score=71.57 Aligned_cols=93 Identities=14% Similarity=0.089 Sum_probs=72.6
Q ss_pred hHHHHHHHhhCCCEEEEEeCCCCc-----hh-hhhcCCccc-ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCc
Q psy13054 968 GLETAKLLKAFKVSKILYTSRRVK-----EE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTA 1040 (1128)
Q Consensus 968 G~~vA~~l~afG~~Vi~~d~~~~~-----~~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga 1040 (1128)
|.++|..|...|.+|++||++... .. ..+.|++.. +..+++++||+|++++|....++.++. .....+++++
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~-~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAK-NILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHH-HHHhhCCCCC
Confidence 889999999999999999976541 11 345566644 778899999999999996554777774 6778889999
Q ss_pred EEEEcCCCcccCH-HHHHHHHh
Q psy13054 1041 ILVNTSRGGLLDQ-EALVEFLK 1061 (1128)
Q Consensus 1041 ~lIN~aRG~lVde-~aL~~aL~ 1061 (1128)
++||++.+..... +.+.+.+.
T Consensus 111 IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 111 VICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred EEEEecCCCHHHHHHHHHHHhc
Confidence 9999999887655 56666664
No 198
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.50 E-value=0.012 Score=66.44 Aligned_cols=121 Identities=18% Similarity=0.230 Sum_probs=83.7
Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
++.||++.|||-+ .+|+++|.+|..-|+.|.++.++. .+|.+..++||||+.++.-. ++|.++
T Consensus 156 ~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T------------~~L~~~~~~ADIvV~AvGkp----~~i~~~ 219 (288)
T PRK14171 156 NLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT------------HNLSSITSKADIVVAAIGSP----LKLTAE 219 (288)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCCC----CccCHH
Confidence 5899999999997 579999999999999998886543 25889999999999999843 578875
Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHH
Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~ 1111 (1128)
.+ |+|+++|++|=-.+ .+|++.| ||-.++- ... =-.+||==||.-.-+..-+.+-+
T Consensus 220 ~v---k~GavVIDvGin~~----------~~gkl~G---DVd~~~v-------~~~-a~~iTPVPGGVGp~T~a~L~~N~ 275 (288)
T PRK14171 220 YF---NPESIVIDVGINRI----------SGNKIIG---DVDFENV-------KSK-VKYITPVPGGIGPMTIAFLLKNT 275 (288)
T ss_pred Hc---CCCCEEEEeecccc----------CCCCeEC---CccHHHH-------Hhh-ceEeCCCCCCcHHHHHHHHHHHH
Confidence 54 69999999984432 2345443 4421111 000 12578877776655554444433
Q ss_pred HH
Q psy13054 1112 AE 1113 (1128)
Q Consensus 1112 ~~ 1113 (1128)
++
T Consensus 276 v~ 277 (288)
T PRK14171 276 VK 277 (288)
T ss_pred HH
Confidence 33
No 199
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=96.49 E-value=0.033 Score=67.63 Aligned_cols=135 Identities=16% Similarity=0.229 Sum_probs=88.4
Q ss_pred CeEEEEEcChhhHHHHHHHhhC--CCEEEEEeCCCCchhhhhcC--------------------Ccc-cChHhhhccCCE
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAF--KVSKILYTSRRVKEEGTALG--------------------AQL-VPLDTLCAESDF 1013 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~af--G~~Vi~~d~~~~~~~~~~~g--------------------~~~-~~l~ell~~sDv 1013 (1128)
.+|+|||+|.+|..+|-.|... |.+|++||....+.+.-..| ... .+.++.++.||+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 4799999999999999999855 68999999766543311101 111 245677899999
Q ss_pred EEEecCCCcc-----------ccccc--CHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEe-ccCCCCCC
Q psy13054 1014 IFVTCALTKD-----------TEQLI--GRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLD-VMIPEPLP 1079 (1128)
Q Consensus 1014 V~l~lPlt~~-----------T~~li--~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLD-V~e~EPl~ 1079 (1128)
+++|+|.... ...+. -+..-+.++++.++|.-|.-.+=.++.+...|.+.. .|.-.. +|-||=+.
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PErl~ 160 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPEFLA 160 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCCccC
Confidence 9999973221 11222 123456679999999998888777788888777521 111111 26788776
Q ss_pred CCCcc---ccCCCeEE
Q psy13054 1080 ADHPL---VQLDNCVL 1092 (1128)
Q Consensus 1080 ~~~pL---~~~pNvil 1092 (1128)
+.+.+ ...|.||+
T Consensus 161 ~G~a~~d~~~p~riVi 176 (473)
T PLN02353 161 EGTAIEDLFKPDRVLI 176 (473)
T ss_pred CCCcccccCCCCEEEE
Confidence 66544 44566654
No 200
>PRK06141 ornithine cyclodeaminase; Validated
Probab=96.44 E-value=0.006 Score=70.31 Aligned_cols=86 Identities=20% Similarity=0.223 Sum_probs=60.0
Q ss_pred CCCeEEEEEcChhhHHHHHHHhh-CC-CEEEEEeCCCCchh--hhh---cC--Ccc-cChHhhhccCCEEEEecCCCccc
Q psy13054 955 KGATVGIVGLGNIGLETAKLLKA-FK-VSKILYTSRRVKEE--GTA---LG--AQL-VPLDTLCAESDFIFVTCALTKDT 1024 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~a-fG-~~Vi~~d~~~~~~~--~~~---~g--~~~-~~l~ell~~sDvV~l~lPlt~~T 1024 (1128)
..++++|||.|.+|+.+++.+.. ++ .+|.+|+++..+.. ..+ .+ +.. .++++++++||+|+.+.|..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--- 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--- 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence 46889999999999999985543 44 57889987665544 222 13 333 37888999999998777744
Q ss_pred ccccCHHHHccCCCCcEEEEcC
Q psy13054 1025 EQLIGRKQFSLMKPTAILVNTS 1046 (1128)
Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~a 1046 (1128)
.-++.. +.++||+.+.-++
T Consensus 201 ~pvl~~---~~l~~g~~i~~ig 219 (314)
T PRK06141 201 EPLVRG---EWLKPGTHLDLVG 219 (314)
T ss_pred CCEecH---HHcCCCCEEEeeC
Confidence 456765 4568999444444
No 201
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.42 E-value=0.011 Score=66.80 Aligned_cols=78 Identities=19% Similarity=0.293 Sum_probs=65.2
Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
++.||++.|||-+ .+|+++|.+|..-|+.|.+++++.. ++.+..++||+|+.+++-. ++|..+
T Consensus 156 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~------------~l~~~~~~ADIvIsAvGk~----~~i~~~ 219 (284)
T PRK14177 156 DVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQ------------NLPSIVRQADIIVGAVGKP----EFIKAD 219 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC------------CHHHHHhhCCEEEEeCCCc----CccCHH
Confidence 5899999999996 6799999999999999998875432 5788999999999999844 578765
Q ss_pred HHccCCCCcEEEEcCCCc
Q psy13054 1032 QFSLMKPTAILVNTSRGG 1049 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~ 1049 (1128)
. .|+|+++|++|--.
T Consensus 220 ~---ik~gavVIDvGin~ 234 (284)
T PRK14177 220 W---ISEGAVLLDAGYNP 234 (284)
T ss_pred H---cCCCCEEEEecCcc
Confidence 4 47999999998543
No 202
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.42 E-value=0.015 Score=66.13 Aligned_cols=126 Identities=21% Similarity=0.294 Sum_probs=87.7
Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
++.||++.|||-+ .+|+++|.+|..-|+.|.++.++. .++.+..++||+|+.+++-. ++++.+
T Consensus 155 ~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvIsAvGkp----~~i~~~ 218 (297)
T PRK14186 155 DIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT------------QDLASITREADILVAAAGRP----NLIGAE 218 (297)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCCc----CccCHH
Confidence 5899999999996 579999999999999998886433 26889999999999999944 578865
Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHH
Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~ 1111 (1128)
. .|+|+++|++|--.+.|.. ++|++.| ||-.++ .... --.+||--||.-.-+..-+.+-+
T Consensus 219 ~---ik~gavVIDvGin~~~~~~------~~gkl~G---Dvd~~~-------v~~~-a~~iTPVPGGVGp~T~a~L~~Nl 278 (297)
T PRK14186 219 M---VKPGAVVVDVGIHRLPSSD------GKTRLCG---DVDFEE-------VEPV-AAAITPVPGGVGPMTVTMLLVNT 278 (297)
T ss_pred H---cCCCCEEEEeccccccccc------cCCceeC---CccHHH-------HHhh-ceEecCCCCCchHHHHHHHHHHH
Confidence 5 4799999999866643221 2455544 443211 1111 23589998887665554444444
Q ss_pred HHH
Q psy13054 1112 AEN 1114 (1128)
Q Consensus 1112 ~~n 1114 (1128)
++-
T Consensus 279 ~~a 281 (297)
T PRK14186 279 VLS 281 (297)
T ss_pred HHH
Confidence 433
No 203
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.38 E-value=0.016 Score=63.83 Aligned_cols=108 Identities=21% Similarity=0.301 Sum_probs=71.8
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCC---------Cchh---h-hhcC-------CcccChHhhh-ccC
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR---------VKEE---G-TALG-------AQLVPLDTLC-AES 1011 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~---------~~~~---~-~~~g-------~~~~~l~ell-~~s 1011 (1128)
++.|++|.|.|+|++|+.+|+.|..+|++|+++.+.. +..+ . ...+ .+..+.++++ .+|
T Consensus 28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~~ 107 (227)
T cd01076 28 GLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELDC 107 (227)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeecc
Confidence 5899999999999999999999999999999554331 1111 1 1111 1223334433 367
Q ss_pred CEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE
Q psy13054 1012 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128)
Q Consensus 1012 DvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128)
||++-|.+. +.|+.+...+++ =.+++--+-+.+ . ..-.+.|+++.+..+
T Consensus 108 Dvlip~a~~-----~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~~~ 156 (227)
T cd01076 108 DILIPAALE-----NQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGVLVV 156 (227)
T ss_pred cEEEecCcc-----CccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCEEE
Confidence 888877653 467888888886 455556666665 4 555677887777554
No 204
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.37 E-value=0.011 Score=66.89 Aligned_cols=78 Identities=18% Similarity=0.293 Sum_probs=65.7
Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
++.||++.|||-+ .+|+++|.+|..-|+.|.+++.+. .++.+..++||+|+.+++-. +++.++
T Consensus 157 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T------------~~l~~~~~~ADIvVsAvGkp----~~i~~~ 220 (294)
T PRK14187 157 NLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT------------RDLADYCSKADILVAAVGIP----NFVKYS 220 (294)
T ss_pred CCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCCc----CccCHH
Confidence 5899999999996 579999999999999999887543 25789999999999999844 578876
Q ss_pred HHccCCCCcEEEEcCCCc
Q psy13054 1032 QFSLMKPTAILVNTSRGG 1049 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~ 1049 (1128)
.+ |+|+++|++|--.
T Consensus 221 ~i---k~gaiVIDVGin~ 235 (294)
T PRK14187 221 WI---KKGAIVIDVGINS 235 (294)
T ss_pred Hc---CCCCEEEEecccc
Confidence 55 6999999998554
No 205
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=96.31 E-value=0.011 Score=66.14 Aligned_cols=119 Identities=23% Similarity=0.329 Sum_probs=87.4
Q ss_pred ccCCCeEEEEEcCh-hhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLGN-IGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G~-IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
+++||++.|||-++ +|++++..|..-+++|.++.++.. ++.+..++||||++++-.. ++|.++
T Consensus 153 ~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~------------~l~~~~k~ADIvv~AvG~p----~~i~~d 216 (283)
T COG0190 153 DLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTK------------DLASITKNADIVVVAVGKP----HFIKAD 216 (283)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCC------------CHHHHhhhCCEEEEecCCc----cccccc
Confidence 68999999999986 499999999999999999875542 5778899999999998744 677643
Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHH
Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~ 1111 (1128)
..|+|+++|+++--.+-+ +++.| ||-..+ .....--+||=-||.-.-+..-+.+-+
T Consensus 217 ---~vk~gavVIDVGinrv~~----------~kl~G---DVdf~~--------v~~~a~~iTPVPGGVGPmTvamLl~Nt 272 (283)
T COG0190 217 ---MVKPGAVVIDVGINRVND----------GKLVG---DVDFDS--------VKEKASAITPVPGGVGPMTVAMLLENT 272 (283)
T ss_pred ---cccCCCEEEecCCccccC----------CceEe---eccHHH--------HHHhhcccCCCCCccCHHHHHHHHHHH
Confidence 458999999998766544 56644 553222 222334588888887776654443333
No 206
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=96.30 E-value=0.013 Score=66.60 Aligned_cols=132 Identities=18% Similarity=0.221 Sum_probs=89.6
Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
++.||++.|||-+ .+|+++|.+|..-|++|.++..+.. ++++..++||+|+.++.-. ++|..+
T Consensus 164 ~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T~------------nl~~~~~~ADIvv~AvGk~----~~i~~~ 227 (299)
T PLN02516 164 PIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTP------------DPESIVREADIVIAAAGQA----MMIKGD 227 (299)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCC------------CHHHHHhhCCEEEEcCCCc----CccCHH
Confidence 5899999999997 5799999999999999998865432 5789999999999998743 688865
Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcC-CceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHH
Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDK-KIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSST 1110 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g-~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~ 1110 (1128)
. .|+|+++|++|--.+-|. ...+| ++ .=||-.++- ...--.+||=-||.-.-+..-+.+-
T Consensus 228 ~---vk~gavVIDvGin~~~~~-----~~~~g~kl---~GDvd~e~v--------~~~a~~iTPVPGGVGp~T~a~L~~N 288 (299)
T PLN02516 228 W---IKPGAAVIDVGTNAVSDP-----SKKSGYRL---VGDVDFAEV--------SKVAGWITPVPGGVGPMTVAMLLKN 288 (299)
T ss_pred H---cCCCCEEEEeeccccCcc-----cccCCCce---EcCcChHHh--------hhhceEecCCCCCchHHHHHHHHHH
Confidence 5 479999999985543221 11123 33 235532111 1111248998777766666555555
Q ss_pred HHHHHHHHH
Q psy13054 1111 SAENIIRGY 1119 (1128)
Q Consensus 1111 ~~~nl~~~l 1119 (1128)
+++-.++++
T Consensus 289 ~v~a~~~~~ 297 (299)
T PLN02516 289 TVDGAKRVF 297 (299)
T ss_pred HHHHHHHHh
Confidence 555445544
No 207
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.25 E-value=0.011 Score=63.00 Aligned_cols=96 Identities=21% Similarity=0.211 Sum_probs=62.9
Q ss_pred ccCCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhc----CCc-----c---cChHhhhccCCEEEEe
Q psy13054 953 GLKGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE--GTAL----GAQ-----L---VPLDTLCAESDFIFVT 1017 (1128)
Q Consensus 953 ~L~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~----g~~-----~---~~l~ell~~sDvV~l~ 1017 (1128)
.+.++++.|+|. |.+|+.+++.|...|.+|++++++..+.. .... +.. . .++.+.++++|+|+.+
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~a 104 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAA 104 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEEC
Confidence 367899999995 99999999999999999998876544322 1111 111 1 1234678889999988
Q ss_pred cCCCcccccccCHHHHccCCCCcEEEEcCCCcccC
Q psy13054 1018 CALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052 (1128)
Q Consensus 1018 lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVd 1052 (1128)
.|....+ .+. .-...+++.+++++.+...++
T Consensus 105 t~~g~~~--~~~--~~~~~~~~~vv~D~~~~~~~~ 135 (194)
T cd01078 105 GAAGVEL--LEK--LAWAPKPLAVAADVNAVPPVG 135 (194)
T ss_pred CCCCcee--chh--hhcccCceeEEEEccCCCCCC
Confidence 8866541 111 111234567777777666553
No 208
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.25 E-value=0.0075 Score=68.95 Aligned_cols=72 Identities=24% Similarity=0.343 Sum_probs=59.3
Q ss_pred cCCccc-CHHHHhhc---CCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEe
Q psy13054 307 LGAQLV-PLDTLCAE---SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLD 381 (1128)
Q Consensus 307 ~g~~~v-sLdeLl~~---SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLD 381 (1128)
.|++.. +.++++++ ||+|++++|-.+.++.+++ +.+..+++|.++|+++.....+..++.+.+++..+. -+|
T Consensus 42 ~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~-~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd 117 (299)
T PRK12490 42 LGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK-DLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD 117 (299)
T ss_pred CCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH-HHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence 344443 88999877 6999999998878888884 567789999999999999999999999999886653 356
No 209
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.24 E-value=0.012 Score=68.11 Aligned_cols=96 Identities=22% Similarity=0.387 Sum_probs=70.5
Q ss_pred ccCCCeEEEEEc-ChhhHHHHHHHh-hCCC-EEEEEeCCCCchh--hhhcC-CcccChHhhhccCCEEEEecCCCccccc
Q psy13054 953 GLKGATVGIVGL-GNIGLETAKLLK-AFKV-SKILYTSRRVKEE--GTALG-AQLVPLDTLCAESDFIFVTCALTKDTEQ 1026 (1128)
Q Consensus 953 ~L~gktvGIIG~-G~IG~~vA~~l~-afG~-~Vi~~d~~~~~~~--~~~~g-~~~~~l~ell~~sDvV~l~lPlt~~T~~ 1026 (1128)
.+.||+|.|+|. |.||+.+++.|. ..|. +++++++...+.. ..+.+ ....++++.+.++|+|+.+.... ..
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~---~~ 228 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP---KG 228 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC---cC
Confidence 478999999999 899999999996 4564 7778875443332 22222 23357889999999988655432 24
Q ss_pred -ccCHHHHccCCCCcEEEEcCCCcccCHH
Q psy13054 1027 -LIGRKQFSLMKPTAILVNTSRGGLLDQE 1054 (1128)
Q Consensus 1027 -li~~~~l~~mk~ga~lIN~aRG~lVde~ 1054 (1128)
+++++.+ +++.++|+.|+..=||.+
T Consensus 229 ~~I~~~~l---~~~~~viDiAvPRDVd~~ 254 (340)
T PRK14982 229 VEIDPETL---KKPCLMIDGGYPKNLDTK 254 (340)
T ss_pred CcCCHHHh---CCCeEEEEecCCCCCCcc
Confidence 4787644 799999999999988753
No 210
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.24 E-value=0.013 Score=66.26 Aligned_cols=77 Identities=26% Similarity=0.393 Sum_probs=64.6
Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhh----CCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccc
Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKA----FKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQL 1027 (1128)
Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~a----fG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~l 1027 (1128)
++.||++.|||-+ .+|+++|.+|.. -+++|..++.+. .++.+.+++||+|+.+++. .++
T Consensus 154 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t------------~~l~~~~~~ADIVI~AvG~----p~l 217 (286)
T PRK14184 154 SPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT------------PDLAEECREADFLFVAIGR----PRF 217 (286)
T ss_pred CCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecCC----CCc
Confidence 5899999999997 579999999988 789988886432 2688999999999999963 367
Q ss_pred cCHHHHccCCCCcEEEEcCCC
Q psy13054 1028 IGRKQFSLMKPTAILVNTSRG 1048 (1128)
Q Consensus 1028 i~~~~l~~mk~ga~lIN~aRG 1048 (1128)
|.++.+ |+|+++|++|=-
T Consensus 218 i~~~~v---k~GavVIDVGi~ 235 (286)
T PRK14184 218 VTADMV---KPGAVVVDVGIN 235 (286)
T ss_pred CCHHHc---CCCCEEEEeeee
Confidence 888777 899999999843
No 211
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.23 E-value=0.016 Score=65.46 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=65.5
Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
++.||++.|||-+ .+|+++|.+|..-|+.|.++.++.. ++.+..++||+|+.+++- .++|..+
T Consensus 154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T~------------nl~~~~~~ADIvI~AvGk----~~~i~~~ 217 (282)
T PRK14182 154 DPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTA------------DLAGEVGRADILVAAIGK----AELVKGA 217 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC------------CHHHHHhhCCEEEEecCC----cCccCHH
Confidence 5899999999996 5799999999999999998865432 578899999999999984 3578876
Q ss_pred HHccCCCCcEEEEcCCCcc
Q psy13054 1032 QFSLMKPTAILVNTSRGGL 1050 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~l 1050 (1128)
.+ |+|+++|++|--.+
T Consensus 218 ~i---k~gaiVIDvGin~~ 233 (282)
T PRK14182 218 WV---KEGAVVIDVGMNRL 233 (282)
T ss_pred Hc---CCCCEEEEeeceec
Confidence 54 69999999985553
No 212
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.22 E-value=0.02 Score=64.43 Aligned_cols=106 Identities=16% Similarity=0.153 Sum_probs=72.3
Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhc---C-CcccChHhh-hccCCEEEEecCCC--ccc
Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTAL---G-AQLVPLDTL-CAESDFIFVTCALT--KDT 1024 (1128)
Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~---g-~~~~~l~el-l~~sDvV~l~lPlt--~~T 1024 (1128)
..+++++|+|.|.+|++++..+...|++|.++++...+.+ .... + ....++++. +.++|+|++++|.. ++.
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~ 194 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI 194 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence 4678999999999999999999999999999986654433 1111 2 122345543 35899999999975 222
Q ss_pred cc-ccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCC
Q psy13054 1025 EQ-LIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKK 1064 (1128)
Q Consensus 1025 ~~-li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~ 1064 (1128)
.. .++ .+.++++.+++++.-... ++ .|++..++..
T Consensus 195 ~~~~~~---~~~l~~~~~v~D~~y~p~-~T-~ll~~A~~~G 230 (270)
T TIGR00507 195 DEPPVP---AEKLKEGMVVYDMVYNPG-ET-PFLAEAKSLG 230 (270)
T ss_pred CCCCCC---HHHcCCCCEEEEeccCCC-CC-HHHHHHHHCC
Confidence 11 223 345788999999987665 33 4666655543
No 213
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=96.21 E-value=0.018 Score=64.44 Aligned_cols=124 Identities=21% Similarity=0.212 Sum_probs=76.4
Q ss_pred HHHHHhhCC--CEEEEEeCCCCchh-hhhcCCccc--ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEc
Q psy13054 971 TAKLLKAFK--VSKILYTSRRVKEE-GTALGAQLV--PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNT 1045 (1128)
Q Consensus 971 vA~~l~afG--~~Vi~~d~~~~~~~-~~~~g~~~~--~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~ 1045 (1128)
+|+.|+..| .+|++||++..... +.+.|+... +-.+.++++|+|++|+|. ..+..++. +.-..+++|++++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~-~~~~~~l~-~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPV-SAIEDVLE-EIAPYLKPGAIVTDV 78 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-H-HHHHHHHH-HHHCGS-TTSEEEE-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCH-HHHHHHHH-HhhhhcCCCcEEEEe
Confidence 467777767 89999997766554 445666432 225789999999999994 44555663 455668999999999
Q ss_pred CCCcccCHHHHHHHHhcCCceEEEEe-ccCCC---CCCCCCccccCCCeEECCCCC
Q psy13054 1046 SRGGLLDQEALVEFLKDKKIGGAGLD-VMIPE---PLPADHPLVQLDNCVLTPHTS 1097 (1128)
Q Consensus 1046 aRG~lVde~aL~~aL~~g~i~gaaLD-V~e~E---Pl~~~~pL~~~pNvilTPHia 1097 (1128)
+.-+.--.+++.+.+.. .....+.= -|-+| |..++..|+.-.|+++||+-.
T Consensus 79 ~SvK~~~~~~~~~~~~~-~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~ 133 (258)
T PF02153_consen 79 GSVKAPIVEAMERLLPE-GVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED 133 (258)
T ss_dssp -S-CHHHHHHHHHHHTS-SGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred CCCCHHHHHHHHHhcCc-ccceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence 98887666677776662 22222221 12222 222355788888999999966
No 214
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=96.20 E-value=0.016 Score=66.87 Aligned_cols=126 Identities=14% Similarity=0.217 Sum_probs=85.2
Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
++.||++.|||-+ .+|+++|.+|..-|+.|.++..+.. ++.+..++||||+.+++-. ++++.+
T Consensus 211 ~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T~------------nl~~~~~~ADIvIsAvGkp----~~v~~d 274 (345)
T PLN02897 211 EIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTK------------DPEQITRKADIVIAAAGIP----NLVRGS 274 (345)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCCC------------CHHHHHhhCCEEEEccCCc----CccCHH
Confidence 5899999999997 5799999999999999988865432 5788999999999999844 578865
Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcC-CceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHH
Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDK-KIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSST 1110 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g-~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~ 1110 (1128)
.+ |+|+++|++|--.+-+.. =+.| ++. =||..++-.+. --.+||==||.-.-+..-+.+-
T Consensus 275 ~v---k~GavVIDVGin~~~~~~-----~~~g~klv---GDVdfe~v~~~--------as~iTPVPGGVGpmTvamLm~N 335 (345)
T PLN02897 275 WL---KPGAVVIDVGTTPVEDSS-----CEFGYRLV---GDVCYEEALGV--------ASAITPVPGGVGPMTITMLLCN 335 (345)
T ss_pred Hc---CCCCEEEEcccccccccc-----ccCCCeeE---ecccHHHHHhh--------ccccCCCCCchhHHHHHHHHHH
Confidence 54 699999999865432110 0124 443 36643322110 1247888777665555444443
Q ss_pred HHH
Q psy13054 1111 SAE 1113 (1128)
Q Consensus 1111 ~~~ 1113 (1128)
+++
T Consensus 336 ~~~ 338 (345)
T PLN02897 336 TLD 338 (345)
T ss_pred HHH
Confidence 333
No 215
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.19 E-value=0.011 Score=67.85 Aligned_cols=88 Identities=8% Similarity=0.070 Sum_probs=65.5
Q ss_pred CCCeEEEEEcChhhHHHHHHHhh-CCC-EEEEEeCCCCchh--hhhc---CCc--ccChHhhhccCCEEEEecCCCcccc
Q psy13054 955 KGATVGIVGLGNIGLETAKLLKA-FKV-SKILYTSRRVKEE--GTAL---GAQ--LVPLDTLCAESDFIFVTCALTKDTE 1025 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~a-fG~-~Vi~~d~~~~~~~--~~~~---g~~--~~~l~ell~~sDvV~l~lPlt~~T~ 1025 (1128)
..++++|||.|.+|+..++.+.. ++. +|.+|+++..+.. ..+. +.. ..+++++++++|+|+.+.|.++
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~--- 200 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT--- 200 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC---
Confidence 56899999999999999999864 564 6788877665543 2221 222 2378899999999999999553
Q ss_pred cccCHHHHccCCCCcEEEEcCCCc
Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSRGG 1049 (1128)
Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aRG~ 1049 (1128)
-+|+. .+|||+.++++|.-.
T Consensus 201 Pl~~~----~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 201 PVYPE----AARAGRLVVAVGAFT 220 (304)
T ss_pred ceeCc----cCCCCCEEEecCCCC
Confidence 56764 369999999998543
No 216
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.18 E-value=0.016 Score=65.99 Aligned_cols=78 Identities=17% Similarity=0.271 Sum_probs=64.5
Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhh----CCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccc
Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKA----FKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQL 1027 (1128)
Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~a----fG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~l 1027 (1128)
++.||++.|||-+ .+|+++|.+|.. -|++|....... .++.+.+++||+|+.+++.. ++
T Consensus 156 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t------------~~l~~~~~~ADIvI~Avg~~----~l 219 (295)
T PRK14174 156 ETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT------------KDIPSYTRQADILIAAIGKA----RF 219 (295)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecCcc----Cc
Confidence 5899999999996 579999999976 578887775332 25889999999999999643 68
Q ss_pred cCHHHHccCCCCcEEEEcCCCc
Q psy13054 1028 IGRKQFSLMKPTAILVNTSRGG 1049 (1128)
Q Consensus 1028 i~~~~l~~mk~ga~lIN~aRG~ 1049 (1128)
|.++.+ |+|+++|++|=-.
T Consensus 220 i~~~~v---k~GavVIDVgi~~ 238 (295)
T PRK14174 220 ITADMV---KPGAVVIDVGINR 238 (295)
T ss_pred cCHHHc---CCCCEEEEeeccc
Confidence 998887 9999999998544
No 217
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=96.17 E-value=0.0061 Score=69.60 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=58.0
Q ss_pred cCHHHHhhcCCEEEEecCCCcccccccCH--HHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEec
Q psy13054 312 VPLDTLCAESDFIFVTCALTKDTEQLIGR--KQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDV 382 (1128)
Q Consensus 312 vsLdeLl~~SDiVslh~PLT~~T~~lIn~--~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDV 382 (1128)
.+..+++++||+|++++|-....+..+.. ..+..+++|.++||++.+.......+.+.+++..+. -+|.
T Consensus 49 ~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~lda 119 (296)
T PRK15461 49 ASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDV 119 (296)
T ss_pred CCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence 48899999999999999988777777643 356789999999999999999999999999987654 3553
No 218
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.16 E-value=0.018 Score=65.08 Aligned_cols=78 Identities=18% Similarity=0.248 Sum_probs=64.7
Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
++.||++.|||-+ .+|+++|.+|..-|++|.++.++.. ++.+..++||+|+.+++-. ++|+++
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~------------dl~~~~k~ADIvIsAvGkp----~~i~~~ 218 (282)
T PRK14180 155 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTT------------DLKSHTTKADILIVAVGKP----NFITAD 218 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCC------------CHHHHhhhcCEEEEccCCc----CcCCHH
Confidence 5899999999996 5799999999999999998864432 6778899999999999844 568865
Q ss_pred HHccCCCCcEEEEcCCCc
Q psy13054 1032 QFSLMKPTAILVNTSRGG 1049 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~ 1049 (1128)
. .|+|+++|++|--.
T Consensus 219 ~---vk~gavVIDvGin~ 233 (282)
T PRK14180 219 M---VKEGAVVIDVGINH 233 (282)
T ss_pred H---cCCCcEEEEecccc
Confidence 4 47999999998433
No 219
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=96.15 E-value=0.014 Score=67.59 Aligned_cols=87 Identities=10% Similarity=0.116 Sum_probs=63.6
Q ss_pred CCeEEEEEcChhhHHHHHHHhhC--CCEEEEEeCCCCchh-h-h---hcCCc---ccChHhhhccCCEEEEecCCCcccc
Q psy13054 956 GATVGIVGLGNIGLETAKLLKAF--KVSKILYTSRRVKEE-G-T---ALGAQ---LVPLDTLCAESDFIFVTCALTKDTE 1025 (1128)
Q Consensus 956 gktvGIIG~G~IG~~vA~~l~af--G~~Vi~~d~~~~~~~-~-~---~~g~~---~~~l~ell~~sDvV~l~lPlt~~T~ 1025 (1128)
-+++||||.|.+|+..++.+... .-+|.+||++.++.. . . +.+.. ..+.++++++||+|+.|.|.. .
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~---~ 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR---K 204 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---C
Confidence 47899999999999877665432 357888887766643 1 1 33432 247999999999999999853 3
Q ss_pred cccCHHHHccCCCCcEEEEcCCC
Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSRG 1048 (1128)
Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aRG 1048 (1128)
-+++.+ .+|||+.+.++|.-
T Consensus 205 P~~~~~---~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 205 PVVKAD---WVSEGTHINAIGAD 224 (325)
T ss_pred cEecHH---HcCCCCEEEecCCC
Confidence 567654 45999999999853
No 220
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.15 E-value=0.018 Score=65.13 Aligned_cols=79 Identities=23% Similarity=0.319 Sum_probs=64.9
Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhC----CCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccc
Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAF----KVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQL 1027 (1128)
Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~af----G~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~l 1027 (1128)
++.||++.|||-+ .+|+++|.+|..- ++.|.++.++. .++.+.+++||+|+.+++-. ++
T Consensus 150 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T------------~~l~~~~~~ADIvV~AvG~p----~~ 213 (287)
T PRK14181 150 PLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS------------ENLTEILKTADIIIAAIGVP----LF 213 (287)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCCc----Cc
Confidence 5899999999997 5799999999877 78888876433 25889999999999999844 57
Q ss_pred cCHHHHccCCCCcEEEEcCCCcc
Q psy13054 1028 IGRKQFSLMKPTAILVNTSRGGL 1050 (1128)
Q Consensus 1028 i~~~~l~~mk~ga~lIN~aRG~l 1050 (1128)
+.++.+ |+|+++||+|--.+
T Consensus 214 i~~~~i---k~GavVIDvGin~~ 233 (287)
T PRK14181 214 IKEEMI---AEKAVIVDVGTSRV 233 (287)
T ss_pred cCHHHc---CCCCEEEEeccccc
Confidence 887654 69999999986553
No 221
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.09 E-value=0.012 Score=70.27 Aligned_cols=91 Identities=18% Similarity=0.226 Sum_probs=62.2
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--hhhcC-Cccc---ChHhhhccCCEEEEecCCCcccc
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--GTALG-AQLV---PLDTLCAESDFIFVTCALTKDTE 1025 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~~~~g-~~~~---~l~ell~~sDvV~l~lPlt~~T~ 1025 (1128)
.+.|+++.|||.|.+|+.+++.|...|. ++.++++...+.. +...+ .... ++.+++.++|+|+.|.+...
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~--- 254 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLE--- 254 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCC---
Confidence 5789999999999999999999999996 6777776655543 33333 3333 45677899999999988543
Q ss_pred cccCHHHHccCCCCcEEEEcCCC
Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSRG 1048 (1128)
Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aRG 1048 (1128)
.+|..+... .+.-++|+.|=.
T Consensus 255 ~vi~~~~~~--~~~~~~iDLavP 275 (414)
T PRK13940 255 YIVTCKYVG--DKPRVFIDISIP 275 (414)
T ss_pred eeECHHHhC--CCCeEEEEeCCC
Confidence 355654432 122345554433
No 222
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.09 E-value=0.064 Score=61.72 Aligned_cols=108 Identities=21% Similarity=0.202 Sum_probs=73.6
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcc--------------cChHhhhccCCEEEEecCCCc
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQL--------------VPLDTLCAESDFIFVTCALTK 1022 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~--------------~~l~ell~~sDvV~l~lPlt~ 1022 (1128)
.+|+|||.|.||..+|..|...|.+|.++.+.. .......|.+. .+..+....+|+|++++|..
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~- 83 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD-YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTT- 83 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC-HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCC-
Confidence 579999999999999999999999999987654 22222222211 12223467899999999944
Q ss_pred ccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE
Q psy13054 1023 DTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128)
Q Consensus 1023 ~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128)
++...+. ..-...++++.+|...-| +-.++.|.+.+...++.++
T Consensus 84 ~~~~~~~-~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g 127 (313)
T PRK06249 84 ANALLAP-LIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGG 127 (313)
T ss_pred ChHhHHH-HHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE
Confidence 3443332 233445778888888776 4567778888877676554
No 223
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=96.08 E-value=0.019 Score=66.50 Aligned_cols=78 Identities=19% Similarity=0.328 Sum_probs=65.3
Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
++.||++.|||-+ .+|+++|.+|..-|+.|.++..+. .++.+..++||||+.++.-. ++|+++
T Consensus 228 ~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T------------~nl~~~~r~ADIVIsAvGkp----~~i~~d 291 (364)
T PLN02616 228 EIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------KNPEEITREADIIISAVGQP----NMVRGS 291 (364)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC------------CCHHHHHhhCCEEEEcCCCc----CcCCHH
Confidence 5899999999996 579999999999999999886443 26889999999999999844 578876
Q ss_pred HHccCCCCcEEEEcCCCc
Q psy13054 1032 QFSLMKPTAILVNTSRGG 1049 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~ 1049 (1128)
.+ |+|+++|++|=-.
T Consensus 292 ~v---K~GAvVIDVGIn~ 306 (364)
T PLN02616 292 WI---KPGAVVIDVGINP 306 (364)
T ss_pred Hc---CCCCEEEeccccc
Confidence 54 7999999998554
No 224
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.08 E-value=0.02 Score=64.65 Aligned_cols=119 Identities=21% Similarity=0.317 Sum_probs=85.7
Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhh--CCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccC
Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKA--FKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIG 1029 (1128)
Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~a--fG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~ 1029 (1128)
++.||++.|||-+ .+|+++|.+|.. -++.|.++..+. .++.+..++||+|+.+++-. ++|.
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T------------~~l~~~~k~ADIvV~AvGkp----~~i~ 218 (284)
T PRK14193 155 ELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT------------RDLAAHTRRADIIVAAAGVA----HLVT 218 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC------------CCHHHHHHhCCEEEEecCCc----CccC
Confidence 5899999999996 679999999987 799998886432 26889999999999999854 5788
Q ss_pred HHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHH
Q psy13054 1030 RKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSS 1109 (1128)
Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~ 1109 (1128)
.+.+ |+|+++|++|--.+ .+|++.| ||- .+ ..... -.+||-=||.-.-+..-+.+
T Consensus 219 ~~~i---k~GavVIDvGin~~----------~~gkl~G---Dvd-~~-------v~~~a-~~iTPVPGGVGp~T~a~L~~ 273 (284)
T PRK14193 219 ADMV---KPGAAVLDVGVSRA----------GDGKLVG---DVH-PD-------VWEVA-GAVSPNPGGVGPMTRAFLLT 273 (284)
T ss_pred HHHc---CCCCEEEEcccccc----------CCCcEEe---ecC-Hh-------HHhhC-CEEeCCCCChhHHHHHHHHH
Confidence 7654 69999999996664 3455544 554 21 11111 25899988876655544443
Q ss_pred HHH
Q psy13054 1110 TSA 1112 (1128)
Q Consensus 1110 ~~~ 1112 (1128)
-++
T Consensus 274 N~~ 276 (284)
T PRK14193 274 NVV 276 (284)
T ss_pred HHH
Confidence 333
No 225
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.07 E-value=0.0094 Score=72.54 Aligned_cols=68 Identities=21% Similarity=0.316 Sum_probs=51.0
Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcCCcccChHhh--hccCCEEEEecCCC
Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALGAQLVPLDTL--CAESDFIFVTCALT 1021 (1128)
Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~~l~el--l~~sDvV~l~lPlt 1021 (1128)
+.+++++|+|.|.+|++++..+...|++|.++++...+.+ ....+....+++++ +.++|+|++|+|..
T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g 401 (477)
T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPS 401 (477)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCC
Confidence 6789999999999999999999999999998876544333 22222223334433 57899999999965
No 226
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.00 E-value=0.087 Score=57.62 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=71.3
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCC----------chh--hhhc-CCcc------cChHhhh-ccCC
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV----------KEE--GTAL-GAQL------VPLDTLC-AESD 1012 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~----------~~~--~~~~-g~~~------~~l~ell-~~sD 1012 (1128)
++.|++|.|.|+|++|+.+|+.|...|++|+...+... ... ..+. ++.. .+-++++ ..||
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D 99 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVD 99 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceecccc
Confidence 47899999999999999999999999998777654443 111 1111 1111 1223433 3689
Q ss_pred EEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE
Q psy13054 1013 FIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128)
Q Consensus 1013 vV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128)
|++-|.+.+ .|+.+....++ =.+++--+.+.+-+ .-.+.|++..+..
T Consensus 100 VlipaA~~~-----~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~v 146 (217)
T cd05211 100 IFAPCALGN-----VIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGIVV 146 (217)
T ss_pred EEeeccccC-----ccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcEE
Confidence 999887744 78888888887 55566667777654 3456666665544
No 227
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=95.92 E-value=0.0084 Score=62.31 Aligned_cols=89 Identities=13% Similarity=0.228 Sum_probs=53.8
Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCccccC------chhhhHHHHHhhc-------CCChhhhhhhhH-HHH
Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG------QLFSLVYDFCRYS-------IGGVTIKRLVKK-TFI 767 (1128)
Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~~~~~------~~~~~~~~la~~~-------pg~~~t~~l~~~-~~l 767 (1128)
++|||||+|++|+.+|++|..-|.+|.+||+.+.+.+. .....+.++++.| |..++++.++.. +++
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 58999999999999999999999999999965433211 1111277777776 777777766543 244
Q ss_pred HHhcceEEeeeeecccCCCcchhccc
Q psy13054 768 LSFGGLVVTVLHVHIGDLPAESFEDQ 793 (1128)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1128)
..++.-.+- +-+++++++.-.++
T Consensus 82 ~~l~~g~ii---id~sT~~p~~~~~~ 104 (163)
T PF03446_consen 82 AGLRPGKII---IDMSTISPETSREL 104 (163)
T ss_dssp GGS-TTEEE---EE-SS--HHHHHHH
T ss_pred hccccceEE---EecCCcchhhhhhh
Confidence 444221111 23566666655543
No 228
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.91 E-value=0.015 Score=62.69 Aligned_cols=92 Identities=18% Similarity=0.280 Sum_probs=68.6
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCC---Cchh-----hhhcC-----------------Ccc-----
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRR---VKEE-----GTALG-----------------AQL----- 1001 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~---~~~~-----~~~~g-----------------~~~----- 1001 (1128)
.|..++|+|||.|.+|..+|+.|...|. +++++|... ++.. ..+.| +..
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~ 97 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDE 97 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeee
Confidence 5888999999999999999999999998 688888761 1100 00000 110
Q ss_pred ----cChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEc
Q psy13054 1002 ----VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNT 1045 (1128)
Q Consensus 1002 ----~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~ 1045 (1128)
..++++++.+|+|+-+ ..+++++.++..+....++...++...
T Consensus 98 ~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~ 144 (200)
T TIGR02354 98 KITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAAS 144 (200)
T ss_pred eCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEe
Confidence 1245678899999988 689999999988888888877777643
No 229
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=95.90 E-value=0.014 Score=65.34 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=64.1
Q ss_pred CCeEEEEEcChhhHHHHHHHhhCC----CEEEEEeCCCCchhhhhcCCcc-cChHhhhccCCEEEEecCCCcccccccCH
Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFK----VSKILYTSRRVKEEGTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGR 1030 (1128)
Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG----~~Vi~~d~~~~~~~~~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li~~ 1030 (1128)
..+|||||+|+||.++++.+..-| -++++++++..+ .+... .+..+++.++|+|++++| ...++.++..
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl~~ 76 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN-----TPFVYLQSNEELAKTCDIIVLAVK-PDLAGKVLLE 76 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc-----CCeEEeCChHHHHHhCCEEEEEeC-HHHHHHHHHH
Confidence 468999999999999999998665 247777754332 12222 367788899999999988 5556666542
Q ss_pred HHHccCCCCcEEEEcCCCcccCHHHHHHHHhc
Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128)
Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128)
.-..++++ .+|.+.-| +..+.+.+.+..
T Consensus 77 -i~~~l~~~-~iIS~~aG--i~~~~l~~~~~~ 104 (260)
T PTZ00431 77 -IKPYLGSK-LLISICGG--LNLKTLEEMVGV 104 (260)
T ss_pred -HHhhccCC-EEEEEeCC--ccHHHHHHHcCC
Confidence 22344444 55666555 345656655543
No 230
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.85 E-value=0.079 Score=59.17 Aligned_cols=156 Identities=15% Similarity=0.054 Sum_probs=94.1
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCC--------chh-h------h-hc------------CCcccCh
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV--------KEE-G------T-AL------------GAQLVPL 1004 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~--------~~~-~------~-~~------------g~~~~~l 1004 (1128)
++.|+||.|-|+|++|+.+|+.|..+|++|+++.+... ..+ . . .. +.+..+-
T Consensus 35 ~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~ 114 (254)
T cd05313 35 TLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEG 114 (254)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCC
Confidence 58999999999999999999999999999995533110 000 0 0 00 2334455
Q ss_pred Hhhh-ccCCEEEEecCCCcccccccCHHHHccCC--CCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCC
Q psy13054 1005 DTLC-AESDFIFVTCALTKDTEQLIGRKQFSLMK--PTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPAD 1081 (1128)
Q Consensus 1005 ~ell-~~sDvV~l~lPlt~~T~~li~~~~l~~mk--~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~ 1081 (1128)
++++ ..|||++-| .+.+.|+++...+++ .=.+++--+-+.+-+ +--+.|.++.|..+ =|+.-+-=--.-
T Consensus 115 ~~~~~~~~DIliPc-----Al~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~vv-PD~laNaGGViv 186 (254)
T cd05313 115 KKPWEVPCDIAFPC-----ATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVLFA-PGKAANAGGVAV 186 (254)
T ss_pred cchhcCCCcEEEec-----cccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcEEE-CchhhcCCCeee
Confidence 5543 469999866 366789999888885 455677777777644 45577877776554 232222100000
Q ss_pred CccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHH
Q psy13054 1082 HPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGY 1119 (1128)
Q Consensus 1082 ~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l 1119 (1128)
+-+=-..| .-|..|.-++..+++.+.+.+...+.+
T Consensus 187 s~~E~~qn---~~~~~w~~e~V~~~l~~~m~~~~~~v~ 221 (254)
T cd05313 187 SGLEMSQN---SQRLSWTAEEVDAKLKDIMKNIHDACA 221 (254)
T ss_pred eHHHhhcc---cccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 00000112 224456667777777776666655443
No 231
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=95.83 E-value=0.018 Score=68.09 Aligned_cols=98 Identities=21% Similarity=0.252 Sum_probs=70.1
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCC-CEEEEEeCCCCchh--hhhcCCcccC---hHhhhccCCEEEEecCCCccccc
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFK-VSKILYTSRRVKEE--GTALGAQLVP---LDTLCAESDFIFVTCALTKDTEQ 1026 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG-~~Vi~~d~~~~~~~--~~~~g~~~~~---l~ell~~sDvV~l~lPlt~~T~~ 1026 (1128)
+|.++++.|||+|.||.-+|+.|...| .+|++.++...+.. +...+..+.+ +.+.+.++|+|+.+.. +...
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs---a~~~ 251 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS---APHP 251 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC---CCcc
Confidence 489999999999999999999999999 46777777766665 6677766654 5567899999998754 3344
Q ss_pred ccCHHHHccCC---CCcEEEEcCCCcccCH
Q psy13054 1027 LIGRKQFSLMK---PTAILVNTSRGGLLDQ 1053 (1128)
Q Consensus 1027 li~~~~l~~mk---~ga~lIN~aRG~lVde 1053 (1128)
+|+.+.+...- +.-++|+.|=..-|++
T Consensus 252 ii~~~~ve~a~~~r~~~livDiavPRdie~ 281 (414)
T COG0373 252 IITREMVERALKIRKRLLIVDIAVPRDVEP 281 (414)
T ss_pred ccCHHHHHHHHhcccCeEEEEecCCCCCCc
Confidence 66665444331 1246677665554443
No 232
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.80 E-value=0.031 Score=63.46 Aligned_cols=78 Identities=18% Similarity=0.313 Sum_probs=64.0
Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhC----CCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccc
Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAF----KVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQL 1027 (1128)
Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~af----G~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~l 1027 (1128)
++.||++.|||-+ .+|+++|.+|..- ++.|.++.++.. ++.+..++||+|+.+++-. ++
T Consensus 154 ~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~------------nl~~~~~~ADIvIsAvGkp----~~ 217 (293)
T PRK14185 154 ETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRSK------------NLKKECLEADIIIAALGQP----EF 217 (293)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCCC------------CHHHHHhhCCEEEEccCCc----Cc
Confidence 5899999999996 5799999999865 789988864432 6888999999999999844 57
Q ss_pred cCHHHHccCCCCcEEEEcCCCc
Q psy13054 1028 IGRKQFSLMKPTAILVNTSRGG 1049 (1128)
Q Consensus 1028 i~~~~l~~mk~ga~lIN~aRG~ 1049 (1128)
|.++ ..|+|+++|++|--.
T Consensus 218 i~~~---~vk~gavVIDvGin~ 236 (293)
T PRK14185 218 VKAD---MVKEGAVVIDVGTTR 236 (293)
T ss_pred cCHH---HcCCCCEEEEecCcc
Confidence 8764 457999999998654
No 233
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.69 E-value=0.037 Score=62.98 Aligned_cols=131 Identities=17% Similarity=0.246 Sum_probs=87.4
Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhC----CCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccc
Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAF----KVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQL 1027 (1128)
Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~af----G~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~l 1027 (1128)
++.||++.|||-+ .+|+++|.+|..- ++.|.++.++. .++.+..++||+|+.++.-. ++
T Consensus 158 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T------------~~l~~~~~~ADIvVsAvGkp----~~ 221 (297)
T PRK14168 158 ETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS------------KNLARHCQRADILIVAAGVP----NL 221 (297)
T ss_pred CCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC------------cCHHHHHhhCCEEEEecCCc----Cc
Confidence 5899999999996 6799999999876 78888875433 25888999999999998743 57
Q ss_pred cCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCC--ceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHH
Q psy13054 1028 IGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKK--IGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRD 1105 (1128)
Q Consensus 1028 i~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~--i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~ 1105 (1128)
|+.+. .|+|+++||+|--.+.+. .++|+ +.| ||-.++ .... ---+||=-||.-.-+..
T Consensus 222 i~~~~---ik~gavVIDvGin~~~~~------~~~g~~~~~G---DVdfe~-------v~~~-a~~iTPVPGGVGp~T~a 281 (297)
T PRK14168 222 VKPEW---IKPGATVIDVGVNRVGTN------ESTGKAILSG---DVDFDA-------VKEI-AGKITPVPGGVGPMTIA 281 (297)
T ss_pred cCHHH---cCCCCEEEecCCCccCcc------ccCCCcceec---cccHHH-------HHhh-ccEecCCCCCchHHHHH
Confidence 88655 479999999986553211 12343 323 442110 1111 13488887777666665
Q ss_pred HHHHHHHHHHHHHH
Q psy13054 1106 EKSSTSAENIIRGY 1119 (1128)
Q Consensus 1106 ~~~~~~~~nl~~~l 1119 (1128)
-+.+-+++-.++++
T Consensus 282 ~L~~N~~~a~~~~~ 295 (297)
T PRK14168 282 MLMRNTLKSAKFHL 295 (297)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555445443
No 234
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.68 E-value=0.0073 Score=58.04 Aligned_cols=88 Identities=19% Similarity=0.231 Sum_probs=58.5
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHH
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQ 1032 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~ 1032 (1128)
.+.|++|.|||.|.+|.+-++.|...|++|.++.+.....+ .........+++-+..+|+|+.+.+. ++ +++..
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~-~~i~~~~~~~~~~l~~~~lV~~at~d-~~----~n~~i 77 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE-GLIQLIRREFEEDLDGADLVFAATDD-PE----LNEAI 77 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH-TSCEEEESS-GGGCTTESEEEE-SS--HH----HHHHH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh-hHHHHHhhhHHHHHhhheEEEecCCC-HH----HHHHH
Confidence 58999999999999999999999999999999987751111 11111122455678889988876663 33 34555
Q ss_pred HccCCCCcEEEEcC
Q psy13054 1033 FSLMKPTAILVNTS 1046 (1128)
Q Consensus 1033 l~~mk~ga~lIN~a 1046 (1128)
.+..+.-.+++|++
T Consensus 78 ~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 78 YADARARGILVNVV 91 (103)
T ss_dssp HHHHHHTTSEEEET
T ss_pred HHHHhhCCEEEEEC
Confidence 66666667777774
No 235
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.63 E-value=0.019 Score=62.17 Aligned_cols=90 Identities=17% Similarity=0.210 Sum_probs=61.6
Q ss_pred ccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhc-CCccc--C-hHhhhccCCEEEEecCCCccc
Q psy13054 951 IMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTAL-GAQLV--P-LDTLCAESDFIFVTCALTKDT 1024 (1128)
Q Consensus 951 ~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~-g~~~~--~-l~ell~~sDvV~l~lPlt~~T 1024 (1128)
+.++.|++|.|||.|.+|.+-++.|..+|++|.++++...... ..+. .+++. + -.+.+..+|+|+.+.. .++
T Consensus 4 ~l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~-d~~- 81 (205)
T TIGR01470 4 FANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATD-DEE- 81 (205)
T ss_pred EEEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCC-CHH-
Confidence 3478999999999999999999999999999999987665332 1111 23221 1 1345677888776544 333
Q ss_pred ccccCHHHHccCCCCcEEEEc
Q psy13054 1025 EQLIGRKQFSLMKPTAILVNT 1045 (1128)
Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~ 1045 (1128)
+|....+..+.-.++||+
T Consensus 82 ---ln~~i~~~a~~~~ilvn~ 99 (205)
T TIGR01470 82 ---LNRRVAHAARARGVPVNV 99 (205)
T ss_pred ---HHHHHHHHHHHcCCEEEE
Confidence 345555556666677775
No 236
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.60 E-value=0.035 Score=64.26 Aligned_cols=95 Identities=11% Similarity=0.067 Sum_probs=60.4
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
.+.|+++.|||+|.||+-+++.|...|. ++++.++........+. ....-+...++|||+.+...|....-++..+
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~---~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~ 247 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTV---VREELSFQDPYDVIFFGSSESAYAFPHLSWE 247 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhh---hhhhhhcccCCCEEEEcCCcCCCCCceeeHH
Confidence 5789999999999999999999999995 57777655432111110 0011145679999998743344444556666
Q ss_pred HHccCCCCcEEEEcCCCccc
Q psy13054 1032 QFSLMKPTAILVNTSRGGLL 1051 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lV 1051 (1128)
.++..++ -+||+.|=..=|
T Consensus 248 ~~~~~~~-r~~iDLAvPRdI 266 (338)
T PRK00676 248 SLADIPD-RIVFDFNVPRTF 266 (338)
T ss_pred HHhhccC-cEEEEecCCCCC
Confidence 6654332 266666544433
No 237
>PRK14031 glutamate dehydrogenase; Provisional
Probab=95.59 E-value=0.04 Score=65.95 Aligned_cols=155 Identities=15% Similarity=0.079 Sum_probs=90.8
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCC--------ch-h------------------hhhcCCcccChH
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV--------KE-E------------------GTALGAQLVPLD 1005 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~--------~~-~------------------~~~~g~~~~~l~ 1005 (1128)
+|.|+||.|.|+|++|...|+.|..+|++|+++.+... .. . ....+.+..+-+
T Consensus 225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~~d 304 (444)
T PRK14031 225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVEGA 304 (444)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcCCc
Confidence 48999999999999999999999999999998554111 00 0 001133344555
Q ss_pred hhh-ccCCEEEEecCCCcccccccCHHHHccCCC-Cc-EEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCC
Q psy13054 1006 TLC-AESDFIFVTCALTKDTEQLIGRKQFSLMKP-TA-ILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADH 1082 (1128)
Q Consensus 1006 ell-~~sDvV~l~lPlt~~T~~li~~~~l~~mk~-ga-~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~ 1082 (1128)
+++ ..|||++-| .+.+.|+++...+++. +. +++--|.+ ++..+|. +.|.++.|.-+ =|+..+-=--.-+
T Consensus 305 ~~~~~~cDIliPa-----Al~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI~~~-PD~~aNAGGVivs 376 (444)
T PRK14031 305 RPWGEKGDIALPS-----ATQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKILYA-PGKAANAGGVSVS 376 (444)
T ss_pred ccccCCCcEEeec-----ccccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCcEEe-ChhhccCCCeeee
Confidence 553 358888743 4567899999988865 44 45555666 6766665 45555555333 2222211000000
Q ss_pred ccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHH
Q psy13054 1083 PLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRG 1118 (1128)
Q Consensus 1083 pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~ 1118 (1128)
-+=-..| .-+..|..++..+++.+.+.+...+.
T Consensus 377 ~~E~~qn---~~~~~W~~eeV~~~L~~~m~~~~~~v 409 (444)
T PRK14031 377 GLEMTQN---SIKLSWSSEEVDEKLKSIMKNIHEAC 409 (444)
T ss_pred hhhhhcc---ccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 0101122 23455667777777766666555443
No 238
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.58 E-value=0.026 Score=65.19 Aligned_cols=86 Identities=27% Similarity=0.331 Sum_probs=60.7
Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-------ChHhhhccCCEEEEecCCCccccc
Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-------PLDTLCAESDFIFVTCALTKDTEQ 1026 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-------~l~ell~~sDvV~l~lPlt~~T~~ 1026 (1128)
.|++|+|+|+|-.|..-.+.++++|++|+++|...++.+ ++++|...+ .++++-+.+|+|+.+.| . .|
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-~~-- 241 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-AT-- 241 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h-hh--
Confidence 589999999999999999999999999999998887765 666665432 12333333777777777 3 22
Q ss_pred ccCHHHHccCCCCcEEEEcC
Q psy13054 1027 LIGRKQFSLMKPTAILVNTS 1046 (1128)
Q Consensus 1027 li~~~~l~~mk~ga~lIN~a 1046 (1128)
+ ...++.+|++..++-++
T Consensus 242 -~-~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 242 -L-EPSLKALRRGGTLVLVG 259 (339)
T ss_pred -H-HHHHHHHhcCCEEEEEC
Confidence 2 24555666665555543
No 239
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=95.52 E-value=0.038 Score=64.10 Aligned_cols=87 Identities=16% Similarity=0.228 Sum_probs=64.2
Q ss_pred CCCeEEEEEcChhhHHHHHHHh-hCCC-EEEEEeCCCCchh--hhh----cCCcc---cChHhhhccCCEEEEecCCCcc
Q psy13054 955 KGATVGIVGLGNIGLETAKLLK-AFKV-SKILYTSRRVKEE--GTA----LGAQL---VPLDTLCAESDFIFVTCALTKD 1023 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~-afG~-~Vi~~d~~~~~~~--~~~----~g~~~---~~l~ell~~sDvV~l~lPlt~~ 1023 (1128)
..++++|||.|.+|+..++.+. ..+. +|.+|+++..+.+ ... .++.. .++++.+++||+|+.+.|..+
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~- 206 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET- 206 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC-
Confidence 3578999999999999999986 4674 6788887766544 221 24432 368899999999999988643
Q ss_pred cccccCHHHHccCCCCcEEEEcCC
Q psy13054 1024 TEQLIGRKQFSLMKPTAILVNTSR 1047 (1128)
Q Consensus 1024 T~~li~~~~l~~mk~ga~lIN~aR 1047 (1128)
-+|..+. +|+|+.+..++-
T Consensus 207 --p~i~~~~---l~~g~~i~~vg~ 225 (326)
T TIGR02992 207 --PILHAEW---LEPGQHVTAMGS 225 (326)
T ss_pred --cEecHHH---cCCCcEEEeeCC
Confidence 5676554 689998887763
No 240
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.51 E-value=0.045 Score=62.29 Aligned_cols=124 Identities=18% Similarity=0.226 Sum_probs=82.6
Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhC----CCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccc
Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAF----KVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQL 1027 (1128)
Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~af----G~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~l 1027 (1128)
++.||++.|||-+ .+|+++|.+|..- ++.|.++.++. .++.+..++||+|+.++.-. ++
T Consensus 154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T------------~~l~~~~~~ADIvIsAvGkp----~~ 217 (297)
T PRK14167 154 DTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT------------DDLAAKTRRADIVVAAAGVP----EL 217 (297)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCCc----Cc
Confidence 5899999999996 5799999999765 88988875433 25889999999999988744 47
Q ss_pred cCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcC-CceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHH
Q psy13054 1028 IGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK-KIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDE 1106 (1128)
Q Consensus 1028 i~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g-~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~ 1106 (1128)
|+.+. .|+|+++|++|--.+-+.. ++| ++.| ||-.++- ... ---+||=-||.-.-+..-
T Consensus 218 i~~~~---ik~gaiVIDvGin~~~~~~------~~g~kl~G---DVd~e~v-------~~~-a~~iTPVPGGVGpvT~a~ 277 (297)
T PRK14167 218 IDGSM---LSEGATVIDVGINRVDADT------EKGYELVG---DVEFESA-------KEK-ASAITPVPGGVGPMTRAM 277 (297)
T ss_pred cCHHH---cCCCCEEEEccccccCccc------ccCCceee---cCcHHHH-------Hhh-ceEecCCCCCchHHHHHH
Confidence 88644 5799999999855432110 124 4433 5532211 111 134888877766555544
Q ss_pred HHHHHH
Q psy13054 1107 KSSTSA 1112 (1128)
Q Consensus 1107 ~~~~~~ 1112 (1128)
+.+-++
T Consensus 278 L~~N~~ 283 (297)
T PRK14167 278 LLYNTV 283 (297)
T ss_pred HHHHHH
Confidence 444333
No 241
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=95.49 E-value=0.016 Score=62.60 Aligned_cols=94 Identities=23% Similarity=0.324 Sum_probs=63.7
Q ss_pred eEEEEEcChhhHHHHHHHhh--CCC-EEEEEeCCCCchh--hhhcCCcc-cChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 958 TVGIVGLGNIGLETAKLLKA--FKV-SKILYTSRRVKEE--GTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~a--fG~-~Vi~~d~~~~~~~--~~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
+|||||+|.||+.+.+.++. .++ .+.+||+..++.. ....+... .+++|++++.|+|+=|..- +..+ .-
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~-~Av~----e~ 76 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASP-EAVR----EY 76 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCH-HHHH----HH
Confidence 69999999999999999983 123 3567776665554 22233322 4799999999999977662 2222 23
Q ss_pred HHccCCCCcEEEEcCCCcccCHHHH
Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEAL 1056 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL 1056 (1128)
..+.+|.|-=+|=+|-|.+.|+.-+
T Consensus 77 ~~~~L~~g~d~iV~SVGALad~~l~ 101 (255)
T COG1712 77 VPKILKAGIDVIVMSVGALADEGLR 101 (255)
T ss_pred hHHHHhcCCCEEEEechhccChHHH
Confidence 3455666777777788888866543
No 242
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=95.39 E-value=0.021 Score=55.51 Aligned_cols=63 Identities=22% Similarity=0.365 Sum_probs=47.1
Q ss_pred eEEEEEcChhhHHHHHHHhhC--CCEEEE-EeCCCCchh--hhhcCCcc-cChHhhhc--cCCEEEEecCC
Q psy13054 958 TVGIVGLGNIGLETAKLLKAF--KVSKIL-YTSRRVKEE--GTALGAQL-VPLDTLCA--ESDFIFVTCAL 1020 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~af--G~~Vi~-~d~~~~~~~--~~~~g~~~-~~l~ell~--~sDvV~l~lPl 1020 (1128)
++||||+|.+|+.....+... ++++++ +|+...+.. ....++.. .+++++++ +.|+|+++.|.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSG
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCC
Confidence 699999999999999888766 667664 555443333 34456653 48999998 78999999995
No 243
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.39 E-value=0.056 Score=61.48 Aligned_cols=68 Identities=18% Similarity=0.173 Sum_probs=51.3
Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--hhhcC-----Ccc---cChHhhhccCCEEEEecCCC
Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--GTALG-----AQL---VPLDTLCAESDFIFVTCALT 1021 (1128)
Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~~~~g-----~~~---~~l~ell~~sDvV~l~lPlt 1021 (1128)
+.++++.|||.|.+|++++..|...|+ +|.++|+...+.+ +.... ... .++.+.++++|+|+++.|..
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 567999999999999999999999998 7888987766544 22211 111 23455778899999999864
No 244
>PRK06444 prephenate dehydrogenase; Provisional
Probab=95.38 E-value=0.026 Score=60.75 Aligned_cols=61 Identities=16% Similarity=0.203 Sum_probs=46.8
Q ss_pred eEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccC
Q psy13054 958 TVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLM 1036 (1128)
Q Consensus 958 tvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~m 1036 (1128)
+++|||- |.+|+.++++++..|+.|. +++||+|++|+|-. .+..++ +.+
T Consensus 2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~------------------------~~~~DlVilavPv~-~~~~~i-----~~~ 51 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNGLGVY------------------------IKKADHAFLSVPID-AALNYI-----ESY 51 (197)
T ss_pred EEEEEecCCcHHHHHHHHHHhCCCEEE------------------------ECCCCEEEEeCCHH-HHHHHH-----HHh
Confidence 6899998 9999999999999999874 35899999999943 333333 333
Q ss_pred CCCcEEEEcCCCcc
Q psy13054 1037 KPTAILVNTSRGGL 1050 (1128)
Q Consensus 1037 k~ga~lIN~aRG~l 1050 (1128)
. .++++++.-+-
T Consensus 52 ~--~~v~Dv~SvK~ 63 (197)
T PRK06444 52 D--NNFVEISSVKW 63 (197)
T ss_pred C--CeEEeccccCH
Confidence 3 36888877554
No 245
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=95.35 E-value=0.03 Score=64.37 Aligned_cols=113 Identities=19% Similarity=0.216 Sum_probs=77.2
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchhhhhc-------------CCcc-cChHhhhccCCEEEEecCCC
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEEGTAL-------------GAQL-VPLDTLCAESDFIFVTCALT 1021 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~~~~~-------------g~~~-~~l~ell~~sDvV~l~lPlt 1021 (1128)
++|+|||.|.+|..+|..+...|. +|+++|........... .++. .+.++ ++.||+|+++++.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~- 79 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGL- 79 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCC-
Confidence 479999999999999999988665 89999975543321110 1121 35666 7899999999883
Q ss_pred ccccc------------ccCH--HHHccCCCCcEEEEcCCCcccCHHHHHHH--HhcCCceEEE--Ee
Q psy13054 1022 KDTEQ------------LIGR--KQFSLMKPTAILVNTSRGGLLDQEALVEF--LKDKKIGGAG--LD 1071 (1128)
Q Consensus 1022 ~~T~~------------li~~--~~l~~mk~ga~lIN~aRG~lVde~aL~~a--L~~g~i~gaa--LD 1071 (1128)
|...+ ++.. +.+....+++++|+++-.-=+-...+.+. +...++.|.+ ||
T Consensus 80 p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 80 PRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 22222 2211 23444568999999988776667777766 6666777875 67
No 246
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=95.34 E-value=0.035 Score=63.95 Aligned_cols=107 Identities=16% Similarity=0.136 Sum_probs=67.1
Q ss_pred CeEEEEEcChhhHHHHHHHhhC-CCEEEEEeCCCC-chhhhhcCCc-ccChHhhhccCCEEEEecCCCcccccccCHHHH
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAF-KVSKILYTSRRV-KEEGTALGAQ-LVPLDTLCAESDFIFVTCALTKDTEQLIGRKQF 1033 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~af-G~~Vi~~d~~~~-~~~~~~~g~~-~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l 1033 (1128)
-+|||||+|+||+.+++.+... +++++++..+.+ .......++. ..+.++++.+.|+|++|.|.... -....
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th-----~~~~~ 78 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATD-----IPEQA 78 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccC-----HHHHH
Confidence 5899999999999999999765 899887544443 2212222322 24677888999999999985422 13444
Q ss_pred ccCCCCcEEEEcCCCc--ccCHH-HHHHHHhc-CCceEE
Q psy13054 1034 SLMKPTAILVNTSRGG--LLDQE-ALVEFLKD-KKIGGA 1068 (1128)
Q Consensus 1034 ~~mk~ga~lIN~aRG~--lVde~-aL~~aL~~-g~i~ga 1068 (1128)
..++.|.=+|...--. +-+.. .|-++-++ |+..-.
T Consensus 79 ~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi 117 (324)
T TIGR01921 79 PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVI 117 (324)
T ss_pred HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence 5567777777774321 12323 34444453 565443
No 247
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.33 E-value=0.042 Score=63.55 Aligned_cols=116 Identities=20% Similarity=0.252 Sum_probs=75.5
Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCC-CEEEEEeCCCCchhh--hh-------cC----Ccc-cChHhhhccCCEEEEec-
Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFK-VSKILYTSRRVKEEG--TA-------LG----AQL-VPLDTLCAESDFIFVTC- 1018 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG-~~Vi~~d~~~~~~~~--~~-------~g----~~~-~~l~ell~~sDvV~l~l- 1018 (1128)
..++|+|||.|.+|..+|..+...| .++++||...+.... .+ .+ ++. .+.+ .++.||+|+++.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVitag 82 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITAG 82 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECCC
Confidence 5678999999999999999998777 789999987654321 10 11 111 2445 779999999998
Q ss_pred -CCCcc-cc--------cccC--HHHHccCCCCcEEEEcCCCcccCHHHHHHHHh--cCCceEEE--Ee
Q psy13054 1019 -ALTKD-TE--------QLIG--RKQFSLMKPTAILVNTSRGGLLDQEALVEFLK--DKKIGGAG--LD 1071 (1128)
Q Consensus 1019 -Plt~~-T~--------~li~--~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~--~g~i~gaa--LD 1071 (1128)
|..+. ++ .++. .+.+....|.+++||++-..-+-...+.+... ..++.|.+ ||
T Consensus 83 ~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld 151 (319)
T PTZ00117 83 VQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD 151 (319)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence 44331 11 1111 12445567899999997766555555555432 45677665 56
No 248
>PRK09414 glutamate dehydrogenase; Provisional
Probab=95.30 E-value=0.067 Score=64.21 Aligned_cols=109 Identities=10% Similarity=0.120 Sum_probs=74.3
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCC---------Cchh---h------------hhcCCcccChHhhh
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR---------VKEE---G------------TALGAQLVPLDTLC 1008 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~---------~~~~---~------------~~~g~~~~~l~ell 1008 (1128)
++.|+||.|.|+|++|+.+|+.|..+|++|++..+.. +..+ . ...+.++.+.++++
T Consensus 229 ~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~ 308 (445)
T PRK09414 229 SFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPW 308 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcccc
Confidence 4789999999999999999999999999999883311 1110 0 00122334555555
Q ss_pred c-cCCEEEEecCCCcccccccCHHHHccCC--CCcEEEEcCCCcccCHHHHHHHHhcCCceEE
Q psy13054 1009 A-ESDFIFVTCALTKDTEQLIGRKQFSLMK--PTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128)
Q Consensus 1009 ~-~sDvV~l~lPlt~~T~~li~~~~l~~mk--~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128)
. .|||++-|.. .+.|+.+...+++ .=.+++--+-+.+ +.+--+.|.++.|..+
T Consensus 309 ~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~--t~~A~~~L~~rGI~~v 364 (445)
T PRK09414 309 SVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS--TPEAIEVFLEAGVLFA 364 (445)
T ss_pred ccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC--CHHHHHHHHHCCcEEE
Confidence 4 6999997765 3578887777773 3456777788887 3345577777776554
No 249
>PRK14030 glutamate dehydrogenase; Provisional
Probab=95.30 E-value=0.18 Score=60.60 Aligned_cols=156 Identities=16% Similarity=0.120 Sum_probs=97.2
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEE--------EeCCCCchhh---------------h----hc-CCcccCh
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKIL--------YTSRRVKEEG---------------T----AL-GAQLVPL 1004 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~--------~d~~~~~~~~---------------~----~~-g~~~~~l 1004 (1128)
++.|+||.|=|+|++|+..|+.|..+|++|++ ||+..-..+. . .. +.++.+-
T Consensus 225 ~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~~ 304 (445)
T PRK14030 225 DIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFAG 304 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcCC
Confidence 48999999999999999999999999999999 7755332211 0 11 3344455
Q ss_pred Hhhhc-cCCEEEEecCCCcccccccCHHHHccCC--CCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCC
Q psy13054 1005 DTLCA-ESDFIFVTCALTKDTEQLIGRKQFSLMK--PTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPAD 1081 (1128)
Q Consensus 1005 ~ell~-~sDvV~l~lPlt~~T~~li~~~~l~~mk--~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~ 1081 (1128)
++++. .|||.+-|. +.+.|+++...++. .=.+++--+-+ ++..+|- +.|.+..|..+ =|+..+-=--.-
T Consensus 305 ~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~~v-PD~~aNAGGViv 376 (445)
T PRK14030 305 KKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQLFA-PGKAVNAGGVAT 376 (445)
T ss_pred ccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCEEe-CcceecCCCeee
Confidence 55544 488888554 66789988888873 24566667777 6666544 67777766554 233222100000
Q ss_pred CccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHH
Q psy13054 1082 HPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGY 1119 (1128)
Q Consensus 1082 ~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l 1119 (1128)
+-+=-..|. -|.-|..++..+++-+.+.+...+.+
T Consensus 377 s~~E~~qn~---~~~~w~~eeV~~~L~~~m~~~~~~v~ 411 (445)
T PRK14030 377 SGLEMSQNA---MHLSWSAEEVDEKLHQIMSGIHEQCV 411 (445)
T ss_pred ehhhhhccc---cccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 101011222 46667777777777777666655543
No 250
>PRK08618 ornithine cyclodeaminase; Validated
Probab=95.28 E-value=0.046 Score=63.38 Aligned_cols=87 Identities=11% Similarity=0.135 Sum_probs=62.2
Q ss_pred CCCeEEEEEcChhhHHHHHHHh-hCCC-EEEEEeCCCCchh--hh----hcCCc---ccChHhhhccCCEEEEecCCCcc
Q psy13054 955 KGATVGIVGLGNIGLETAKLLK-AFKV-SKILYTSRRVKEE--GT----ALGAQ---LVPLDTLCAESDFIFVTCALTKD 1023 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~-afG~-~Vi~~d~~~~~~~--~~----~~g~~---~~~l~ell~~sDvV~l~lPlt~~ 1023 (1128)
..++++|||.|.+|+..++.+. ..++ +|.+|++...+.+ .. ..++. ..+++++++++|+|+++.|..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 4678999999999999887764 4565 5666766555443 11 12433 247899999999999999955
Q ss_pred cccccCHHHHccCCCCcEEEEcCCC
Q psy13054 1024 TEQLIGRKQFSLMKPTAILVNTSRG 1048 (1128)
Q Consensus 1024 T~~li~~~~l~~mk~ga~lIN~aRG 1048 (1128)
+-+|. +.+|+|+.++.++.-
T Consensus 204 -~p~i~----~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 204 -TPVFS----EKLKKGVHINAVGSF 223 (325)
T ss_pred -CcchH----HhcCCCcEEEecCCC
Confidence 34554 456999999988653
No 251
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=95.26 E-value=0.042 Score=63.36 Aligned_cols=90 Identities=17% Similarity=0.207 Sum_probs=54.9
Q ss_pred CeEEEEEcChhhHHHHHHHhh-CCC-EEEEEeCCCCchh-----hhhcCCcc---cChHhhhccCCEEEEecCCCccccc
Q psy13054 957 ATVGIVGLGNIGLETAKLLKA-FKV-SKILYTSRRVKEE-----GTALGAQL---VPLDTLCAESDFIFVTCALTKDTEQ 1026 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~a-fG~-~Vi~~d~~~~~~~-----~~~~g~~~---~~l~ell~~sDvV~l~lPlt~~T~~ 1026 (1128)
+++||||.|..|+.-++.+.. ++. +|.+|+++..+.+ ....++.. .+.++.+++||+|+.+.|.+..+ -
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P 207 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P 207 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence 589999999999998887753 444 6778877655443 11223332 37999999999999998877644 6
Q ss_pred ccCHHHHccCCCCcEEEEcCCCcc
Q psy13054 1027 LIGRKQFSLMKPTAILVNTSRGGL 1050 (1128)
Q Consensus 1027 li~~~~l~~mk~ga~lIN~aRG~l 1050 (1128)
+++.+ .++||+.++.+|....
T Consensus 208 ~~~~~---~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 208 VFDAE---WLKPGTHINAIGSYTP 228 (313)
T ss_dssp SB-GG---GS-TT-EEEE-S-SST
T ss_pred cccHH---HcCCCcEEEEecCCCC
Confidence 77765 6689999999987654
No 252
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=95.18 E-value=0.23 Score=57.18 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=48.6
Q ss_pred cCCCeEEEEEc---ChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCc-ccChHhhhccCCEEEEec
Q psy13054 954 LKGATVGIVGL---GNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQ-LVPLDTLCAESDFIFVTC 1018 (1128)
Q Consensus 954 L~gktvGIIG~---G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~-~~~l~ell~~sDvV~l~l 1018 (1128)
+.|++|++||= +++.+..+..+..||+++.++.|..-.+... .... ..++++.++.+|||....
T Consensus 154 l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~-~~~~~~~d~~ea~~~aDvvyt~~ 221 (305)
T PRK00856 154 LEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGM-PEYGVHTDLDEVIEDADVVMMLR 221 (305)
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccc-cceEEECCHHHHhCCCCEEEECC
Confidence 67899999988 5899999999999999998887654332210 0112 348999999999998743
No 253
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=95.13 E-value=0.079 Score=67.74 Aligned_cols=115 Identities=14% Similarity=0.141 Sum_probs=82.4
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-h-----------hhcC-------------Cccc-ChHhhhcc
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-G-----------TALG-------------AQLV-PLDTLCAE 1010 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~-----------~~~g-------------~~~~-~l~ell~~ 1010 (1128)
++|+|||.|.||..+|..+...|++|++||......+ . .+.| ++.. ++ +.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 6799999999999999999999999999997765321 0 0111 1112 44 44699
Q ss_pred CCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCC
Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIP 1075 (1128)
Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~ 1075 (1128)
||+|+=++|...+.+.-+=++.=+.++++++|-....+ +....|.++++. +=..+++--|.+
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~-p~r~~g~Hff~P 454 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKR-PENFCGMHFFNP 454 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCC-CccEEEEecCCc
Confidence 99999999999998877766777888999988655443 556667777754 334555555533
No 254
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=95.06 E-value=0.051 Score=60.70 Aligned_cols=101 Identities=19% Similarity=0.178 Sum_probs=64.4
Q ss_pred CeEEEEEcChhhHHHHHHHhhC---CCEEEEEeCCCC-chhhhhcCCccc-ChHhh-hccCCEEEEecCCCcccccccCH
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAF---KVSKILYTSRRV-KEEGTALGAQLV-PLDTL-CAESDFIFVTCALTKDTEQLIGR 1030 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~af---G~~Vi~~d~~~~-~~~~~~~g~~~~-~l~el-l~~sDvV~l~lPlt~~T~~li~~ 1030 (1128)
++|||||+|.||+.+++.+..- ++++.++.++.. +........... +++++ ....|+|+=|.+-. .+-+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~~-----av~e 77 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQ-----AIAE 77 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCHH-----HHHH
Confidence 5899999999999999988642 355555444433 222111123333 79997 68899999887732 1222
Q ss_pred HHHccCCCCcEEEEcCCCcccC---HHHHHHHHhc
Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLD---QEALVEFLKD 1062 (1128)
Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVd---e~aL~~aL~~ 1062 (1128)
--.+-++.|.-++=+|=|.+.| ++.|.++.++
T Consensus 78 ~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~ 112 (267)
T PRK13301 78 HAEGCLTAGLDMIICSAGALADDALRARLIAAAEA 112 (267)
T ss_pred HHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence 2334445677777788888887 4555555544
No 255
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=95.00 E-value=0.047 Score=52.79 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=57.0
Q ss_pred hhHHHHHHHhhCCCEEEEEeCCCCchhhhh----cCCccc-ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcE
Q psy13054 967 IGLETAKLLKAFKVSKILYTSRRVKEEGTA----LGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAI 1041 (1128)
Q Consensus 967 IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~----~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~ 1041 (1128)
-+..+++.|+..|++|.+|||......... .+++.. ++++.++.+|+|+++.+-. +-+.+--.+....|+++.+
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~l~~~~~~~~~~~~~~ 96 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRELDWEEIAKLMRKPPV 96 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGCCGHHHHHHHSCSSEE
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhccCHHHHHHhcCCCCE
Confidence 356899999999999999999988776433 456655 7999999999999999844 4443323345567889999
Q ss_pred EEEc
Q psy13054 1042 LVNT 1045 (1128)
Q Consensus 1042 lIN~ 1045 (1128)
+|++
T Consensus 97 iiD~ 100 (106)
T PF03720_consen 97 IIDG 100 (106)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9987
No 256
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=94.99 E-value=0.091 Score=67.05 Aligned_cols=114 Identities=11% Similarity=0.019 Sum_probs=80.1
Q ss_pred CeEEEEEcChhhHHHHHHHh-hCCCEEEEEeCCCCchh-h-----------hhc-------------CCccc-ChHhhhc
Q psy13054 957 ATVGIVGLGNIGLETAKLLK-AFKVSKILYTSRRVKEE-G-----------TAL-------------GAQLV-PLDTLCA 1009 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~-afG~~Vi~~d~~~~~~~-~-----------~~~-------------g~~~~-~l~ell~ 1009 (1128)
++|+|||.|.||..+|..+. ..|++|++||....... . ... .++.. ++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 68999999999999999887 57999999997754221 0 000 11222 34 4578
Q ss_pred cCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccC
Q psy13054 1010 ESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMI 1074 (1128)
Q Consensus 1010 ~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e 1074 (1128)
.||+|+=++|...+.++=+=++.=+.++++++|.....+ +....|.++++. +=..+++--|.
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~~g~Hffn 445 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASR-PENVIGLHYFS 445 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCC-cccEEEEecCC
Confidence 999999999999988876666677788999888654433 455667777643 22445556553
No 257
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.98 E-value=0.031 Score=65.19 Aligned_cols=92 Identities=11% Similarity=0.142 Sum_probs=64.1
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhh-------c--CC------cc-cChHhhhccCCEEEEecC
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTA-------L--GA------QL-VPLDTLCAESDFIFVTCA 1019 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~-------~--g~------~~-~~l~ell~~sDvV~l~lP 1019 (1128)
.+|+|||.|.+|..+|..|...| .|+.|.++....+ ..+ . +. .. .++++.++.+|+|++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 57999999999999999999888 6778875433221 111 0 11 11 267788899999999999
Q ss_pred CCcccccccCHHHHccCCCCcEEEEcCCCccc
Q psy13054 1020 LTKDTEQLIGRKQFSLMKPTAILVNTSRGGLL 1051 (1128)
Q Consensus 1020 lt~~T~~li~~~~l~~mk~ga~lIN~aRG~lV 1051 (1128)
...++.++. +.-..++++..+|++.-|=-.
T Consensus 87 -s~~~~~vl~-~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 87 -SHGFRGVLT-ELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred -HHHHHHHHH-HHHhhcCCCCEEEEEEeCCcC
Confidence 444555543 333456788899999887543
No 258
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.92 E-value=0.28 Score=57.15 Aligned_cols=157 Identities=15% Similarity=0.183 Sum_probs=117.4
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcC----C-cccChHhh---hccCCEEEEecCCCccccc
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALG----A-QLVPLDTL---CAESDFIFVTCALTKDTEQ 1026 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g----~-~~~~l~el---l~~sDvV~l~lPlt~~T~~ 1026 (1128)
..+|+||+|.||+-+|-....-|.+|.+||+..++.+ .++.+ + ...+++|+ ++.-.-|.+++-...-...
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 4699999999999999999999999999998888765 22222 1 12367665 5667778877765432233
Q ss_pred ccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHH
Q psy13054 1027 LIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDE 1106 (1128)
Q Consensus 1027 li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~ 1106 (1128)
+| ...+..|.+|=++|+-+...--|+.--.++|.+..|...+.-|--.|--.-.- |.+ +-|.+.++++.
T Consensus 84 ~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~G-----PSi-----MpGG~~eay~~ 152 (473)
T COG0362 84 VI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHG-----PSI-----MPGGQKEAYEL 152 (473)
T ss_pred HH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccC-----CCc-----CCCCCHHHHHH
Confidence 44 36788899999999999999999999999999999999999998877522111 221 23788899887
Q ss_pred HHHHHHHHHHHHHcCCCCC
Q psy13054 1107 KSSTSAENIIRGYKGEPMI 1125 (1128)
Q Consensus 1107 ~~~~~~~nl~~~l~G~~l~ 1125 (1128)
+..+ .+.|.+-..|+|+.
T Consensus 153 v~pi-l~~IaAk~~g~pCc 170 (473)
T COG0362 153 VAPI-LTKIAAKVDGEPCC 170 (473)
T ss_pred HHHH-HHHHHhhcCCCCce
Confidence 6654 45666666688874
No 259
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=94.91 E-value=0.046 Score=62.60 Aligned_cols=73 Identities=25% Similarity=0.301 Sum_probs=59.6
Q ss_pred cCCccc-CHHHHhhc---CCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEec
Q psy13054 307 LGAQLV-PLDTLCAE---SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDV 382 (1128)
Q Consensus 307 ~g~~~v-sLdeLl~~---SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDV 382 (1128)
.|++.. +++|+++. +|+|++++|-.+.++.++ ...++.+++|.++|+++.+..-....+.+.+++..+. .+|.
T Consensus 42 ~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~da 118 (301)
T PRK09599 42 EGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDV 118 (301)
T ss_pred CCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEeC
Confidence 455554 78999886 699999999877888877 3567889999999999999999999999999987664 3463
No 260
>PRK08291 ectoine utilization protein EutC; Validated
Probab=94.82 E-value=0.066 Score=62.17 Aligned_cols=85 Identities=15% Similarity=0.210 Sum_probs=60.4
Q ss_pred CCCeEEEEEcChhhHHHHHHHhh-CC-CEEEEEeCCCCchh--hh----hcCCc---ccChHhhhccCCEEEEecCCCcc
Q psy13054 955 KGATVGIVGLGNIGLETAKLLKA-FK-VSKILYTSRRVKEE--GT----ALGAQ---LVPLDTLCAESDFIFVTCALTKD 1023 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~a-fG-~~Vi~~d~~~~~~~--~~----~~g~~---~~~l~ell~~sDvV~l~lPlt~~ 1023 (1128)
..++++|||.|.+|+..+..+.. .+ -+|.+|+++..+.+ .. ..++. ..++++++++||+|+++.|..
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~-- 208 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE-- 208 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence 35789999999999998888874 55 46888876655544 12 12443 247889999999999998864
Q ss_pred cccccCHHHHccCCCCcEEEEc
Q psy13054 1024 TEQLIGRKQFSLMKPTAILVNT 1045 (1128)
Q Consensus 1024 T~~li~~~~l~~mk~ga~lIN~ 1045 (1128)
.-+|..+. +++|+.+.-+
T Consensus 209 -~p~i~~~~---l~~g~~v~~v 226 (330)
T PRK08291 209 -EPILKAEW---LHPGLHVTAM 226 (330)
T ss_pred -CcEecHHH---cCCCceEEee
Confidence 34676544 4677766654
No 261
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=94.81 E-value=0.39 Score=55.28 Aligned_cols=92 Identities=17% Similarity=0.230 Sum_probs=62.9
Q ss_pred cCCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh--h-----hhcCCcc---cChHhhhccCCEEEEec----
Q psy13054 954 LKGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE--G-----TALGAQL---VPLDTLCAESDFIFVTC---- 1018 (1128)
Q Consensus 954 L~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~-----~~~g~~~---~~l~ell~~sDvV~l~l---- 1018 (1128)
+.|++|++||- +++.+..+..+..||++|.+..|..-... . +..|.+. .++++.++.+|+|..-.
T Consensus 150 l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~ 229 (304)
T PRK00779 150 LKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSM 229 (304)
T ss_pred cCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCcccc
Confidence 67899999998 78999999999999999998876653321 1 2234332 48999999999999742
Q ss_pred CCCc---c-----cccccCHHHHccCCCCcEEEEc
Q psy13054 1019 ALTK---D-----TEQLIGRKQFSLMKPTAILVNT 1045 (1128)
Q Consensus 1019 Plt~---~-----T~~li~~~~l~~mk~ga~lIN~ 1045 (1128)
.... + -..-++++.++.+|+++++.-+
T Consensus 230 ~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHp 264 (304)
T PRK00779 230 GQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHC 264 (304)
T ss_pred ccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecC
Confidence 1100 0 1223466666666666666544
No 262
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.77 E-value=0.074 Score=62.69 Aligned_cols=89 Identities=16% Similarity=0.084 Sum_probs=64.8
Q ss_pred CeEEEEEcChhhHHHHHHHhhCC-CEEEEEeCCCCchh-hhhcC---Ccc--------cChHhhhccCCEEEEecCCCcc
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFK-VSKILYTSRRVKEE-GTALG---AQL--------VPLDTLCAESDFIFVTCALTKD 1023 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG-~~Vi~~d~~~~~~~-~~~~g---~~~--------~~l~ell~~sDvV~l~lPlt~~ 1023 (1128)
++|.|||.|.||+.+|..|..-| .+|.+.|+...+.. ..... ++. ..+.+++++.|+|++++|..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~-- 79 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPF-- 79 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCch--
Confidence 57999999999999999998888 99999987766554 32221 211 14778999999999999954
Q ss_pred cccccCHHHH-ccCCCCcEEEEcCCCccc
Q psy13054 1024 TEQLIGRKQF-SLMKPTAILVNTSRGGLL 1051 (1128)
Q Consensus 1024 T~~li~~~~l-~~mk~ga~lIN~aRG~lV 1051 (1128)
++...+ +.++-|.-.|+++-...-
T Consensus 80 ----~~~~i~ka~i~~gv~yvDts~~~~~ 104 (389)
T COG1748 80 ----VDLTILKACIKTGVDYVDTSYYEEP 104 (389)
T ss_pred ----hhHHHHHHHHHhCCCEEEcccCCch
Confidence 344555 445677777777655543
No 263
>PRK06046 alanine dehydrogenase; Validated
Probab=94.75 E-value=0.077 Score=61.55 Aligned_cols=85 Identities=18% Similarity=0.311 Sum_probs=59.8
Q ss_pred CCeEEEEEcChhhHHHHHHHh-hCCCE-EEEEeCCCCchh--hhh----cCC--c-ccChHhhhccCCEEEEecCCCccc
Q psy13054 956 GATVGIVGLGNIGLETAKLLK-AFKVS-KILYTSRRVKEE--GTA----LGA--Q-LVPLDTLCAESDFIFVTCALTKDT 1024 (1128)
Q Consensus 956 gktvGIIG~G~IG~~vA~~l~-afG~~-Vi~~d~~~~~~~--~~~----~g~--~-~~~l~ell~~sDvV~l~lPlt~~T 1024 (1128)
-+++||||.|.+|+..++.+. ..+.+ |.+||+...+.. ..+ .+. . ..+++++++ +|+|+++.|.+
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--- 204 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--- 204 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence 468999999999999998886 34554 445665554433 111 132 2 237889887 99999999864
Q ss_pred ccccCHHHHccCCCCcEEEEcCC
Q psy13054 1025 EQLIGRKQFSLMKPTAILVNTSR 1047 (1128)
Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~aR 1047 (1128)
.-+|+.+. +|+|+.+..+|.
T Consensus 205 ~P~~~~~~---l~~g~hV~~iGs 224 (326)
T PRK06046 205 KPVVKAEW---IKEGTHINAIGA 224 (326)
T ss_pred CcEecHHH---cCCCCEEEecCC
Confidence 35677654 489999888874
No 264
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=94.71 E-value=0.13 Score=57.22 Aligned_cols=153 Identities=20% Similarity=0.272 Sum_probs=89.9
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEE--------eCCCCchh-----hhhcCC-------------cccChH-
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILY--------TSRRVKEE-----GTALGA-------------QLVPLD- 1005 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~--------d~~~~~~~-----~~~~g~-------------~~~~l~- 1005 (1128)
++.|+++.|-|+|++|+.+|+.|...|+++++. |+..-+.+ ..+.+. ++.+-+
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 108 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD 108 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence 489999999999999999999999999999876 43322211 111222 112222
Q ss_pred hhh-ccCCEEEEecCCCcccccccCHHHHc-cCCCCcEEEE-cCCCcccCHHHHHHHHhcCCceEEEEeccCCCC--CCC
Q psy13054 1006 TLC-AESDFIFVTCALTKDTEQLIGRKQFS-LMKPTAILVN-TSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEP--LPA 1080 (1128)
Q Consensus 1006 ell-~~sDvV~l~lPlt~~T~~li~~~~l~-~mk~ga~lIN-~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EP--l~~ 1080 (1128)
+++ ..|||++-|. ..+.|+.+... .+++++-+|- -+.+.+ ..+|.- .|++..|.-+ =|..-+-= ...
T Consensus 109 ~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~-t~~a~~-~L~~rGI~vi-PD~~aNaGGvi~s 180 (244)
T PF00208_consen 109 EILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPL-TPEADE-ILRERGILVI-PDFLANAGGVIVS 180 (244)
T ss_dssp HGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSB-SHHHHH-HHHHTT-EEE--HHHHTTHHHHHH
T ss_pred ccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhc-cHHHHH-HHHHCCCEEE-cchhhcCCCeEee
Confidence 555 6899999873 33578888888 7776665554 455555 555555 8888887655 33222100 000
Q ss_pred CCccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHH
Q psy13054 1081 DHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRG 1118 (1128)
Q Consensus 1081 ~~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~ 1118 (1128)
...+.. | ..+..|..++..+++.+.+.++..+.
T Consensus 181 ~~E~~~--~---~~~~~~~~~~v~~~l~~~m~~~~~~v 213 (244)
T PF00208_consen 181 YFEWLQ--N---LQGLFWTEEEVFEKLEEIMDRAFKRV 213 (244)
T ss_dssp HHHHHH--H---HHTSSTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcc--h---hhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 001111 1 22445566666666666665555543
No 265
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=94.70 E-value=0.063 Score=52.83 Aligned_cols=88 Identities=17% Similarity=0.232 Sum_probs=54.8
Q ss_pred eEEEEEc-ChhhHHHHHHHhhC-CCEEEEE-eCCCCchh-hhhcC--Cc-----ccChHhhh-ccCCEEEEecCCCcccc
Q psy13054 958 TVGIVGL-GNIGLETAKLLKAF-KVSKILY-TSRRVKEE-GTALG--AQ-----LVPLDTLC-AESDFIFVTCALTKDTE 1025 (1128)
Q Consensus 958 tvGIIG~-G~IG~~vA~~l~af-G~~Vi~~-d~~~~~~~-~~~~g--~~-----~~~l~ell-~~sDvV~l~lPlt~~T~ 1025 (1128)
++||+|. |.+|+.+++.++.. ++++..+ +++..... ....+ .. ..+.+++. .++|+|++|+|.. .+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~-~~~ 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHG-VSK 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcH-HHH
Confidence 5899995 99999999999875 7777766 32221111 11111 11 11212222 5899999999955 333
Q ss_pred cccCHHHHccCCCCcEEEEcCC
Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSR 1047 (1128)
Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aR 1047 (1128)
..+. .....+++|.++|+++.
T Consensus 80 ~~~~-~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 80 EIAP-LLPKAAEAGVKVIDLSS 100 (122)
T ss_pred HHHH-HHHhhhcCCCEEEECCc
Confidence 3332 23556799999999973
No 266
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=94.58 E-value=0.097 Score=67.08 Aligned_cols=115 Identities=11% Similarity=0.162 Sum_probs=82.9
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hh-----------hcC-------------Ccc-cChHhhhcc
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GT-----------ALG-------------AQL-VPLDTLCAE 1010 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~-----------~~g-------------~~~-~~l~ell~~ 1010 (1128)
++|+|||.|.||..+|..+...|++|+.||......+ .. ..| ++. .+++ .++.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 5899999999999999999988999999997654322 00 011 111 2444 5689
Q ss_pred CCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCC
Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIP 1075 (1128)
Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~ 1075 (1128)
||+|+=++|.+.+.+.=+=++.=+.++++++|.... +-++...|.++++. +=...++.-|.+
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNT--Ssl~i~~la~~~~~-p~r~ig~Hff~P 476 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNT--SALPIKDIAAVSSR-PEKVIGMHYFSP 476 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcC--CCCCHHHHHhhcCC-ccceEEEeccCC
Confidence 999999999999988777667778889999986433 33566777777754 334566666643
No 267
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.58 E-value=0.054 Score=58.58 Aligned_cols=76 Identities=13% Similarity=0.124 Sum_probs=52.6
Q ss_pred CcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcC-Cccc--C-hHhhhccCCEEEEecCCCc
Q psy13054 949 PNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALG-AQLV--P-LDTLCAESDFIFVTCALTK 1022 (1128)
Q Consensus 949 ~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g-~~~~--~-l~ell~~sDvV~l~lPlt~ 1022 (1128)
|.+..+.||+|.|||.|.+|...++.|...|++|.++++...+.. ....+ +... . .++.+..+|+|+.+....+
T Consensus 3 Pl~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e 82 (202)
T PRK06718 3 PLMIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR 82 (202)
T ss_pred ceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH
Confidence 344579999999999999999999999999999999986543321 11111 2221 2 2345678888887766443
Q ss_pred cc
Q psy13054 1023 DT 1024 (1128)
Q Consensus 1023 ~T 1024 (1128)
-+
T Consensus 83 lN 84 (202)
T PRK06718 83 VN 84 (202)
T ss_pred HH
Confidence 33
No 268
>PLN02477 glutamate dehydrogenase
Probab=94.57 E-value=0.32 Score=57.99 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=90.7
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCC--------chh-h-h--h-------c-CCcccChHhh-hccC
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV--------KEE-G-T--A-------L-GAQLVPLDTL-CAES 1011 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~--------~~~-~-~--~-------~-g~~~~~l~el-l~~s 1011 (1128)
++.|++|.|.|+|++|+.+|+.|...|++|+++.+... ... . + + . +.+..+.+++ ...|
T Consensus 203 ~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~~~ 282 (410)
T PLN02477 203 SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVEPC 282 (410)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceeccc
Confidence 48999999999999999999999999999995533320 011 1 0 0 0 1222344443 3468
Q ss_pred CEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeE
Q psy13054 1012 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCV 1091 (1128)
Q Consensus 1012 DvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvi 1091 (1128)
||++-|. ..+.|+++...+++ =.+++--+-+.+ ..+ --+.|++..|..+ =|+ +..---|+
T Consensus 283 DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~e-a~~~L~~rGI~~~-PD~-----------~aNaGGVi 342 (410)
T PLN02477 283 DVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPE-ADEILRKKGVVVL-PDI-----------YANSGGVT 342 (410)
T ss_pred cEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHH-HHHHHHHCCcEEE-ChH-----------HhCCCCee
Confidence 8888554 34578888888875 667778888887 433 4577888776554 222 22222233
Q ss_pred ECC--------CCCCCcHHHHHHHHHHHHHHHHHHH
Q psy13054 1092 LTP--------HTSSATKAVRDEKSSTSAENIIRGY 1119 (1128)
Q Consensus 1092 lTP--------Hiag~t~e~~~~~~~~~~~nl~~~l 1119 (1128)
.+= |.-|..++..+++.+.+.+.+.+.+
T Consensus 343 vs~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~ 378 (410)
T PLN02477 343 VSYFEWVQNIQGFMWEEEKVNRELDRYMTDAFKALK 378 (410)
T ss_pred eeHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 221 3335556666666656655555443
No 269
>KOG0023|consensus
Probab=94.56 E-value=0.066 Score=60.77 Aligned_cols=88 Identities=26% Similarity=0.343 Sum_probs=58.8
Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCch-h-hhhcCCccc--C------hHhhhccCCEEEEecCCCccc
Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE-E-GTALGAQLV--P------LDTLCAESDFIFVTCALTKDT 1024 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~-~-~~~~g~~~~--~------l~ell~~sDvV~l~lPlt~~T 1024 (1128)
.|+.+||+|+|-+|.--.+.++|||++|++.+....+. + ...+|+... + .+++...-|.++-+++.- .
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~--a 258 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL--A 258 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec--c
Confidence 79999999999999999999999999999998765333 3 444665421 1 345556666666555522 2
Q ss_pred ccccCHHHHccCCCCcEEEEc
Q psy13054 1025 EQLIGRKQFSLMKPTAILVNT 1045 (1128)
Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~ 1045 (1128)
.+-++ ..++.||++..+|-+
T Consensus 259 ~~~~~-~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 259 EHALE-PLLGLLKVNGTLVLV 278 (360)
T ss_pred ccchH-HHHHHhhcCCEEEEE
Confidence 23332 355666665555544
No 270
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=94.53 E-value=0.15 Score=65.27 Aligned_cols=114 Identities=11% Similarity=0.026 Sum_probs=81.4
Q ss_pred CeEEEEEcChhhHHHHHHHh-hCCCEEEEEeCCCCchh-h-----------hhcC-------------Cccc-ChHhhhc
Q psy13054 957 ATVGIVGLGNIGLETAKLLK-AFKVSKILYTSRRVKEE-G-----------TALG-------------AQLV-PLDTLCA 1009 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~-afG~~Vi~~d~~~~~~~-~-----------~~~g-------------~~~~-~l~ell~ 1009 (1128)
++|+|||.|.||..+|..+. ..|++|+.||....... . .+.+ ++.. ++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 68999999999999999987 77999999997654221 1 0011 1111 34 4578
Q ss_pred cCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccC
Q psy13054 1010 ESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMI 1074 (1128)
Q Consensus 1010 ~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e 1074 (1128)
.||+|+=++|.+.+.+.=+=++.=+.++|+++|.....+ +....|.+.++. +=..+++--|.
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~ig~Hff~ 450 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAAR-PEQVIGLHYFS 450 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCc-ccceEEEecCC
Confidence 999999999999888876666666788999999755444 566677777654 22455666663
No 271
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=94.48 E-value=0.1 Score=61.27 Aligned_cols=146 Identities=19% Similarity=0.257 Sum_probs=95.2
Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCC------------------chh--hhhcCCcccChHhhhc-cCC
Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV------------------KEE--GTALGAQLVPLDTLCA-ESD 1012 (1128)
Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~------------------~~~--~~~~g~~~~~l~ell~-~sD 1012 (1128)
+.|+||.|=|+|++|+..|+.|...|.+|+++++... +.. ....+.++.+-++++. .||
T Consensus 205 l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~~cD 284 (411)
T COG0334 205 LEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEVDCD 284 (411)
T ss_pred cCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccccCc
Confidence 8999999999999999999999999999999987776 111 1223455566677664 689
Q ss_pred EEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEE
Q psy13054 1013 FIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVL 1092 (1128)
Q Consensus 1013 vV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvil 1092 (1128)
|.+= -.+.+.|+.+...++|.. +++--+.+.+- .+|--.-++.| |-.+ =|+ |...--|+.
T Consensus 285 Il~P-----cA~~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~~i~~erG-Il~~-PD~-----------laNAGGV~v 344 (411)
T COG0334 285 ILIP-----CALENVITEDNADQLKAK-IVVEGANGPTT-PEADEILLERG-ILVV-PDI-----------LANAGGVIV 344 (411)
T ss_pred EEcc-----cccccccchhhHHHhhhc-EEEeccCCCCC-HHHHHHHHHCC-CEEc-Chh-----------hccCcCeee
Confidence 8873 346678988888888877 77888888865 33333333444 3232 122 222222222
Q ss_pred CC--------CCCCCcHHHHHHHHHHHHHHHHHHH
Q psy13054 1093 TP--------HTSSATKAVRDEKSSTSAENIIRGY 1119 (1128)
Q Consensus 1093 TP--------Hiag~t~e~~~~~~~~~~~nl~~~l 1119 (1128)
+= -..|.-++..+++..++.+..+.+.
T Consensus 345 S~~E~~qn~~~~~wt~eev~~kl~~im~~~~~~~~ 379 (411)
T COG0334 345 SYLEWVQNAQGLYWTEEEVDEKLERIMVNAFEAVY 379 (411)
T ss_pred ehHHHHhhcccCccCHHHHHHHHHHHHHHHHHHHH
Confidence 21 1225666777777777766665543
No 272
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.48 E-value=0.063 Score=62.05 Aligned_cols=90 Identities=18% Similarity=0.242 Sum_probs=61.1
Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhc--------CC------cc-cChHhhh-ccCCEEEEecCC
Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTAL--------GA------QL-VPLDTLC-AESDFIFVTCAL 1020 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~--------g~------~~-~~l~ell-~~sDvV~l~lPl 1020 (1128)
+|+|||.|.+|..+|..|...|.+|.+|+++....+ .... +. .. .++++.+ ..+|+|++++|
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk- 80 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP- 80 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC-
Confidence 599999999999999999999999999986543221 1110 11 11 2456665 58999999999
Q ss_pred CcccccccCHHHHc-cCCCCcEEEEcCCCc
Q psy13054 1021 TKDTEQLIGRKQFS-LMKPTAILVNTSRGG 1049 (1128)
Q Consensus 1021 t~~T~~li~~~~l~-~mk~ga~lIN~aRG~ 1049 (1128)
...+..++. +.-. .++++..+|...-|-
T Consensus 81 s~~~~~~l~-~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 81 TQQLRTICQ-QLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred HHHHHHHHH-HHHHhcCCCCCEEEEEEcCe
Confidence 344554443 2222 556777778777764
No 273
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=94.47 E-value=0.089 Score=53.34 Aligned_cols=86 Identities=22% Similarity=0.262 Sum_probs=51.3
Q ss_pred EEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccCCC
Q psy13054 959 VGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKP 1038 (1128)
Q Consensus 959 vGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ 1038 (1128)
+-|+|.|.+++++++.++.+|++|+++|++.+.- ..++-+. +.+. ++.. +.+ .+.+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~~----------------~~~~~~~-~~~~-~~~~-----~~~-~~~~ 56 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPERF----------------PEADEVI-CIPP-DDIL-----EDL-EIDP 56 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-----------------TTSSEEE-CSHH-HHHH-----HHC--S-T
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcccc----------------CCCCccE-ecCh-HHHH-----hcc-CCCC
Confidence 4689999999999999999999999999885411 1222211 1221 1110 112 3556
Q ss_pred CcEEEEcCCCcccCHHHHHHHHhcCCceEEEE
Q psy13054 1039 TAILVNTSRGGLLDQEALVEFLKDKKIGGAGL 1070 (1128)
Q Consensus 1039 ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaL 1070 (1128)
+.++| +.++.-.|.++|..+|++ +....|+
T Consensus 57 ~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG~ 86 (136)
T PF13478_consen 57 NTAVV-MTHDHELDAEALEAALAS-PARYIGL 86 (136)
T ss_dssp T-EEE---S-CCCHHHHHHHHTTS-S-SEEEE
T ss_pred CeEEE-EcCCchhHHHHHHHHHcC-CCCEEEe
Confidence 66666 889999999999999888 4555543
No 274
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=94.46 E-value=0.07 Score=62.24 Aligned_cols=93 Identities=19% Similarity=0.174 Sum_probs=64.6
Q ss_pred eEEEEEcChhhHHHHHHHhhCC--------CEEEEEeCCC---Cchh---h-h-h------cCC------cc-cChHhhh
Q psy13054 958 TVGIVGLGNIGLETAKLLKAFK--------VSKILYTSRR---VKEE---G-T-A------LGA------QL-VPLDTLC 1008 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG--------~~Vi~~d~~~---~~~~---~-~-~------~g~------~~-~~l~ell 1008 (1128)
+|+|||.|+.|.++|..|..-| .+|..|.+.. .... . . . .++ +. .++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 5899999999999999997656 8999997522 1110 0 0 0 022 12 3788999
Q ss_pred ccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccC
Q psy13054 1009 AESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052 (1128)
Q Consensus 1009 ~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVd 1052 (1128)
+.||+|++++| +...+.++. +.-..++++..+|+++-|=-.+
T Consensus 81 ~~ADiIIlAVP-s~~i~~vl~-~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 81 KGADILVFVIP-HQFLEGICK-QLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred hcCCEEEEECC-hHHHHHHHH-HHHhhcCCCCEEEEEeCCcccC
Confidence 99999999999 444444442 3334568899999999885444
No 275
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.44 E-value=0.14 Score=62.25 Aligned_cols=110 Identities=22% Similarity=0.261 Sum_probs=74.7
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCch------hhhhcCCccc---ChHhhhccCCEEEEecCCCcc
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE------EGTALGAQLV---PLDTLCAESDFIFVTCALTKD 1023 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~------~~~~~g~~~~---~l~ell~~sDvV~l~lPlt~~ 1023 (1128)
.+.+++|+|+|+|..|+++|+.|+..|++|.++|...... .....|+... ...+.+.++|+|++. |.-+.
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~ 89 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRI 89 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCC
Confidence 4678999999999999999999999999999999654311 1233465543 234556889999886 65544
Q ss_pred ccccc-----------CH-HHHcc-CCCCcEEEEcCCCcccCHHHHHHHHhcC
Q psy13054 1024 TEQLI-----------GR-KQFSL-MKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128)
Q Consensus 1024 T~~li-----------~~-~~l~~-mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128)
+.-.+ ++ +.+.+ .+...+-|-=+.|+.-...-|...|+..
T Consensus 90 ~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~ 142 (458)
T PRK01710 90 DSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEE 142 (458)
T ss_pred CchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence 33222 22 12222 2334666777888888777777778753
No 276
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=94.44 E-value=0.066 Score=61.97 Aligned_cols=61 Identities=25% Similarity=0.231 Sum_probs=48.7
Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhh--hcC--Ccc---cChHhhhccCCEEEE
Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGT--ALG--AQL---VPLDTLCAESDFIFV 1016 (1128)
Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~--~~g--~~~---~~l~ell~~sDvV~l 1016 (1128)
++||||||-|..|+.++.-++.+|.+|++.|+..+.+... +.- ..+ ..+.++.++||+|..
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 4799999999999999999999999999999888766511 111 111 258899999999984
No 277
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.44 E-value=0.023 Score=61.40 Aligned_cols=83 Identities=24% Similarity=0.244 Sum_probs=57.3
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCc-------------------hh-----hhhcC--Cc-----
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVK-------------------EE-----GTALG--AQ----- 1000 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~-------------------~~-----~~~~g--~~----- 1000 (1128)
.|.+++|.|||+|.+|..+|+.|...|. ++.++|+..-. .+ ..+.+ ++
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 97 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALK 97 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEeh
Confidence 6899999999999999999999999998 78888876311 11 00100 10
Q ss_pred -c---cChHhhhccCCEEEEecCCCcccccccCHHHHccC
Q psy13054 1001 -L---VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLM 1036 (1128)
Q Consensus 1001 -~---~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~m 1036 (1128)
. .+++++++++|+|+.++. +.+++..+++-..+..
T Consensus 98 ~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~~ 136 (202)
T TIGR02356 98 ERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVALG 136 (202)
T ss_pred hcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcC
Confidence 1 124567888998887764 5677777776554443
No 278
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.41 E-value=0.066 Score=55.60 Aligned_cols=70 Identities=20% Similarity=0.237 Sum_probs=47.8
Q ss_pred CcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcC-Ccc--cCh-HhhhccCCEEEEecC
Q psy13054 949 PNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALG-AQL--VPL-DTLCAESDFIFVTCA 1019 (1128)
Q Consensus 949 ~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g-~~~--~~l-~ell~~sDvV~l~lP 1019 (1128)
|.+..+.|++|.|||-|.+|.+.++.|...|++|.++++..... ..+.+ +.. ..+ ++-+..+|+|+.+..
T Consensus 6 P~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~-l~~l~~i~~~~~~~~~~dl~~a~lViaaT~ 79 (157)
T PRK06719 6 PLMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKE-MKELPYITWKQKTFSNDDIKDAHLIYAATN 79 (157)
T ss_pred ceEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHH-HHhccCcEEEecccChhcCCCceEEEECCC
Confidence 44558999999999999999999999999999999996543322 22221 111 112 223566777776554
No 279
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=94.41 E-value=0.6 Score=53.76 Aligned_cols=92 Identities=16% Similarity=0.214 Sum_probs=62.7
Q ss_pred cCCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh----------hhhcCCc---ccChHhhhccCCEEEEec-
Q psy13054 954 LKGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE----------GTALGAQ---LVPLDTLCAESDFIFVTC- 1018 (1128)
Q Consensus 954 L~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~----------~~~~g~~---~~~l~ell~~sDvV~l~l- 1018 (1128)
+.|.+|+++|- +++-+..+..+..||++|.+..|..-... ....|.+ ..++++.++.+|||..-.
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w 225 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVW 225 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 67899999998 78889999999999999998876553321 1223432 248999999999999743
Q ss_pred -CCCcc----------cccccCHHHHccCCCCcEEEEc
Q psy13054 1019 -ALTKD----------TEQLIGRKQFSLMKPTAILVNT 1045 (1128)
Q Consensus 1019 -Plt~~----------T~~li~~~~l~~mk~ga~lIN~ 1045 (1128)
+...+ ....++++.++.+|+++++.=+
T Consensus 226 ~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHp 263 (304)
T TIGR00658 226 VSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHC 263 (304)
T ss_pred ccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECC
Confidence 11110 1224566667777766666443
No 280
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=94.32 E-value=0.15 Score=56.80 Aligned_cols=91 Identities=14% Similarity=0.131 Sum_probs=61.8
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccC
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLM 1036 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~m 1036 (1128)
-++-|+|.|.+++++++.++.+|++|+++|++.+.... +.+..++.+....| .+.+..+
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~-----------~~~~~~~~~~~~~~----------~~~~~~~ 159 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPE-----------DLPDGVATLVTDEP----------EAEVAEA 159 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccc-----------cCCCCceEEecCCH----------HHHHhcC
Confidence 46999999999999999999999999999987542110 00112222221111 2333345
Q ss_pred CCCcEEEEcCCCcccCHHHHHHHHhcCCceEE
Q psy13054 1037 KPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128)
Q Consensus 1037 k~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128)
.+..++|=+.|+.-.|.++|..+|++...++.
T Consensus 160 ~~~t~vvi~th~h~~D~~~L~~aL~~~~~~YI 191 (246)
T TIGR02964 160 PPGSYFLVLTHDHALDLELCHAALRRGDFAYF 191 (246)
T ss_pred CCCcEEEEEeCChHHHHHHHHHHHhCCCCcEE
Confidence 56777888889999999999999965444333
No 281
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=94.23 E-value=0.052 Score=62.23 Aligned_cols=123 Identities=16% Similarity=0.191 Sum_probs=84.6
Q ss_pred HhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeecccccccccccccCCcccCHHHHhhcCCEEEEecCCCcc
Q psy13054 254 SEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKD 333 (1128)
Q Consensus 254 ~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~ 333 (1128)
+...-.+.|..+. +.|+|-.|+-+|.+..|.+.. +.+...|+...-++.--|++.++++|..+.+||++-+ ..
T Consensus 201 RaTn~liaGK~vV--V~GYG~vGrG~A~~~rg~GA~-ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~----TG 273 (420)
T COG0499 201 RATNVLLAGKNVV--VAGYGWVGRGIAMRLRGMGAR-VIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTA----TG 273 (420)
T ss_pred hhhceeecCceEE--EecccccchHHHHHhhcCCCe-EEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEc----cC
Confidence 3444455666554 679999999998876665432 3344444433323334588889999999999999874 47
Q ss_pred cccccCHHHHhcCCCCcEEEEecCCCc-cCHHHHHH-HHHcCCeeEEEEecCC
Q psy13054 334 TEQLIGRKQFSLMKPTAILINTSRGGL-LDQEALVE-FLKDKKIGGAGLDVMI 384 (1128)
Q Consensus 334 T~~lIn~~~l~~MK~gaiLINtaRG~l-VDe~AL~~-AL~sG~IagAaLDVfe 384 (1128)
+++.|..+.|..||+|+++-|++.=.+ ||-++|.+ +++-..+... .|-|+
T Consensus 274 nkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr~~-V~ey~ 325 (420)
T COG0499 274 NKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVRPQ-VDEYE 325 (420)
T ss_pred CcCccCHHHHHhccCCeEEecccccceeccHHHHHHhhhhHhccccC-ceEEE
Confidence 899999999999999999999986544 67777654 3344444433 34443
No 282
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.20 E-value=0.086 Score=60.56 Aligned_cols=99 Identities=16% Similarity=0.215 Sum_probs=70.3
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hh--------------hcCCcc-cChHhhhccCCEEEEecCC
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GT--------------ALGAQL-VPLDTLCAESDFIFVTCAL 1020 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~--------------~~g~~~-~~l~ell~~sDvV~l~lPl 1020 (1128)
++|.|||.|.-|.++|+.|..-|.+|..|..+..-.. .. ..++.. .+++++++.||+|++.+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP- 80 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP- 80 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC-
Confidence 5799999999999999999999999999975432111 00 011122 379999999999999999
Q ss_pred CcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHH
Q psy13054 1021 TKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALV 1057 (1128)
Q Consensus 1021 t~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~ 1057 (1128)
....+.++..- -..+++++.+|+++-|=-.+.-.+.
T Consensus 81 s~~~r~v~~~l-~~~l~~~~~iv~~sKGie~~t~~l~ 116 (329)
T COG0240 81 SQALREVLRQL-KPLLLKDAIIVSATKGLEPETGRLL 116 (329)
T ss_pred hHHHHHHHHHH-hhhccCCCeEEEEeccccCCCcchH
Confidence 44444444321 2456899999999988766544444
No 283
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.20 E-value=0.067 Score=60.78 Aligned_cols=68 Identities=12% Similarity=0.017 Sum_probs=49.9
Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--hhhcC----Cccc----ChHhhhccCCEEEEecCCC
Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--GTALG----AQLV----PLDTLCAESDFIFVTCALT 1021 (1128)
Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~~~~g----~~~~----~l~ell~~sDvV~l~lPlt 1021 (1128)
+.|+++.|||.|..|++++..|...|+ +|.++++...+.+ +...+ +... ++.+.+.++|+|+++.|..
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 578999999999999999999999998 6888887655543 22211 1111 2335668899999999964
No 284
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=94.19 E-value=0.11 Score=58.39 Aligned_cols=103 Identities=18% Similarity=0.218 Sum_probs=60.9
Q ss_pred CeEEEEEcChhhHHHHHHHhhC-CCEEEEEeCCCCchh--hhhc--CCcc-cChHhhhccCCEEEEecCCCcccccccCH
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAF-KVSKILYTSRRVKEE--GTAL--GAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGR 1030 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~af-G~~Vi~~d~~~~~~~--~~~~--g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li~~ 1030 (1128)
.+|||||+|.||+.+++.+... ++++.+.-.+..... .... ++.. .+++++-...|+|+.|.|...- . +
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~----e 76 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-K----E 76 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-H----H
Confidence 3799999999999999999765 566554432222211 1111 3333 4788885569999999984322 1 2
Q ss_pred HHHccCCCCcEEEEcCCCcccCH---HHHHHHHhcCC
Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQ---EALVEFLKDKK 1064 (1128)
Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde---~aL~~aL~~g~ 1064 (1128)
-..+.++.|.-++-.+-|.+.|. +.|.++.+++.
T Consensus 77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g 113 (265)
T PRK13303 77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGG 113 (265)
T ss_pred HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCC
Confidence 23333445555555555555543 44555555543
No 285
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=94.16 E-value=0.8 Score=52.64 Aligned_cols=95 Identities=23% Similarity=0.315 Sum_probs=65.4
Q ss_pred cCCCeEEEEEcC---hhhHHHHHHHhhCCCEEEEEeCCCCc-h-h----hhhcCCcc---cChHhhhccCCEEEEecCCC
Q psy13054 954 LKGATVGIVGLG---NIGLETAKLLKAFKVSKILYTSRRVK-E-E----GTALGAQL---VPLDTLCAESDFIFVTCALT 1021 (1128)
Q Consensus 954 L~gktvGIIG~G---~IG~~vA~~l~afG~~Vi~~d~~~~~-~-~----~~~~g~~~---~~l~ell~~sDvV~l~lPlt 1021 (1128)
+.|++|++||-| ++.+..+..+..||++|.+..|..-. + . +.+.|... .++++.++.+|||...- ..
T Consensus 148 l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~-~~ 226 (301)
T TIGR00670 148 LDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTR-IQ 226 (301)
T ss_pred CCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECC-cc
Confidence 789999999995 99999999999999999998876532 1 1 12335432 48999999999998632 11
Q ss_pred cc------c------ccccCHHHHccCCCCcEEEEc-CCCc
Q psy13054 1022 KD------T------EQLIGRKQFSLMKPTAILVNT-SRGG 1049 (1128)
Q Consensus 1022 ~~------T------~~li~~~~l~~mk~ga~lIN~-aRG~ 1049 (1128)
.+ . ..-++++.++.+|++++|.-+ =||.
T Consensus 227 ~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHclPRg~ 267 (301)
T TIGR00670 227 KERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPLPRVD 267 (301)
T ss_pred ccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCCCCCc
Confidence 00 0 123466777777777776633 3444
No 286
>PRK06823 ornithine cyclodeaminase; Validated
Probab=94.14 E-value=0.13 Score=59.31 Aligned_cols=86 Identities=19% Similarity=0.231 Sum_probs=63.1
Q ss_pred CCeEEEEEcChhhHHHHHHHhhC-C-CEEEEEeCCCCchh-h----hhcCCcc---cChHhhhccCCEEEEecCCCcccc
Q psy13054 956 GATVGIVGLGNIGLETAKLLKAF-K-VSKILYTSRRVKEE-G----TALGAQL---VPLDTLCAESDFIFVTCALTKDTE 1025 (1128)
Q Consensus 956 gktvGIIG~G~IG~~vA~~l~af-G-~~Vi~~d~~~~~~~-~----~~~g~~~---~~l~ell~~sDvV~l~lPlt~~T~ 1025 (1128)
-++++|||.|..++.-++.+... . -+|.+|+++..+.+ . .+.+... .+.++++++||||+.+.|. +.
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s---~~ 204 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPS---RE 204 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCC---CC
Confidence 47899999999999988877532 2 37888887776654 1 1223332 2789999999999988774 44
Q ss_pred cccCHHHHccCCCCcEEEEcCC
Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSR 1047 (1128)
Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aR 1047 (1128)
-+|+.+ .+|||+.++.+|.
T Consensus 205 P~~~~~---~l~~G~hi~~iGs 223 (315)
T PRK06823 205 PLLQAE---DIQPGTHITAVGA 223 (315)
T ss_pred ceeCHH---HcCCCcEEEecCC
Confidence 678765 4579999999973
No 287
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=94.11 E-value=0.2 Score=64.11 Aligned_cols=113 Identities=12% Similarity=0.120 Sum_probs=79.8
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hh-----------hc-------------CCccc-ChHhhhcc
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GT-----------AL-------------GAQLV-PLDTLCAE 1010 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~-----------~~-------------g~~~~-~l~ell~~ 1010 (1128)
++|+|||.|.||..+|..+...|++|+.||......+ .. +. .++.. ++ +.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 6799999999999999999999999999997654322 00 01 11111 34 44699
Q ss_pred CCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEecc
Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVM 1073 (1128)
Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~ 1073 (1128)
||+|+=++|...+.+.=+=++.=+.++|+++|-....+ ++...|..+++. +=...++=-|
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~~-p~r~ig~Hff 452 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALKR-PENFCGMHFF 452 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCC-cccEEEEecC
Confidence 99999999999888776656666788999998655443 556677777754 2234444444
No 288
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=94.07 E-value=0.16 Score=50.06 Aligned_cols=101 Identities=16% Similarity=0.235 Sum_probs=68.3
Q ss_pred CeEEEEE----cChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCc-ccChHhhhccCCEEEEecCCCcccccccCHH
Q psy13054 957 ATVGIVG----LGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQ-LVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 957 ktvGIIG----~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~-~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
|+++||| -+..|..+.+.|+..|.+|+.+++....-. |.+ +.+++|.=...|++++++| .+.+..+++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~----G~~~y~sl~e~p~~iDlavv~~~-~~~~~~~v~-- 73 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL----GIKCYPSLAEIPEPIDLAVVCVP-PDKVPEIVD-- 73 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET----TEE-BSSGGGCSST-SEEEE-S--HHHHHHHHH--
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC----cEEeeccccCCCCCCCEEEEEcC-HHHHHHHHH--
Confidence 6899999 688999999999999999999987765432 333 4588884488999999999 334444553
Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE
Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128)
.+..+..+.+++..+ ..++++.+.+++..+.-.
T Consensus 74 ~~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 74 EAAALGVKAVWLQPG----AESEELIEAAREAGIRVI 106 (116)
T ss_dssp HHHHHT-SEEEE-TT----S--HHHHHHHHHTT-EEE
T ss_pred HHHHcCCCEEEEEcc----hHHHHHHHHHHHcCCEEE
Confidence 445557889999988 677788888888766543
No 289
>PRK06199 ornithine cyclodeaminase; Validated
Probab=94.04 E-value=0.11 Score=61.52 Aligned_cols=91 Identities=15% Similarity=0.192 Sum_probs=65.8
Q ss_pred CCeEEEEEcChhhHHHHHHHhh-CC--CEEEEEeCCCCchh--h---hhc--C---Ccc-cChHhhhccCCEEEEecCCC
Q psy13054 956 GATVGIVGLGNIGLETAKLLKA-FK--VSKILYTSRRVKEE--G---TAL--G---AQL-VPLDTLCAESDFIFVTCALT 1021 (1128)
Q Consensus 956 gktvGIIG~G~IG~~vA~~l~a-fG--~~Vi~~d~~~~~~~--~---~~~--g---~~~-~~l~ell~~sDvV~l~lPlt 1021 (1128)
-+++||||.|..++.-++.+.. +. -+|.+|++...+.+ . .+. + +.. .+.++++++||||+.+.+.+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 4689999999999999988865 32 37888887766543 1 111 2 222 37999999999999999865
Q ss_pred c---ccccccCHHHHccCCCCcEEEEcCCCc
Q psy13054 1022 K---DTEQLIGRKQFSLMKPTAILVNTSRGG 1049 (1128)
Q Consensus 1022 ~---~T~~li~~~~l~~mk~ga~lIN~aRG~ 1049 (1128)
. ++.-+|+.+ .+|||+.++.++.-+
T Consensus 235 ~~~~s~~Pv~~~~---~lkpG~hv~~ig~~e 262 (379)
T PRK06199 235 TGDPSTYPYVKRE---WVKPGAFLLMPAACR 262 (379)
T ss_pred CCCCCcCcEecHH---HcCCCcEEecCCccc
Confidence 4 455778765 457999888776543
No 290
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=94.00 E-value=0.78 Score=53.50 Aligned_cols=93 Identities=12% Similarity=0.153 Sum_probs=64.1
Q ss_pred cCCCeEEEEEcC--hhhHHHHHHHhhCCCEEEEEeCCCCchh----------hhhcCCcc---cChHhhhccCCEEEEec
Q psy13054 954 LKGATVGIVGLG--NIGLETAKLLKAFKVSKILYTSRRVKEE----------GTALGAQL---VPLDTLCAESDFIFVTC 1018 (1128)
Q Consensus 954 L~gktvGIIG~G--~IG~~vA~~l~afG~~Vi~~d~~~~~~~----------~~~~g~~~---~~l~ell~~sDvV~l~l 1018 (1128)
+.|++|++||=+ ++.+..+..+..||++|.++.|..-.+. .+..|.+. .++++.++.+|||..-.
T Consensus 154 l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~~ 233 (334)
T PRK01713 154 LSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTDV 233 (334)
T ss_pred cCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence 678999999986 6788888999999999998877643221 12234332 48999999999998732
Q ss_pred ----CCCc---c------cccccCHHHHccC-CCCcEEEEcC
Q psy13054 1019 ----ALTK---D------TEQLIGRKQFSLM-KPTAILVNTS 1046 (1128)
Q Consensus 1019 ----Plt~---~------T~~li~~~~l~~m-k~ga~lIN~a 1046 (1128)
.... + -...++.+.++.+ |++++|.-+.
T Consensus 234 w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l 275 (334)
T PRK01713 234 WVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL 275 (334)
T ss_pred eeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence 1100 0 1223677888875 7888887553
No 291
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=93.88 E-value=0.62 Score=54.19 Aligned_cols=64 Identities=19% Similarity=0.248 Sum_probs=49.5
Q ss_pred cCCCeEEEEEcC--hhhHHHHHHHhhCCCEEEEEeCCCCchh----------hhhcCCcc---cChHhhhccCCEEEEe
Q psy13054 954 LKGATVGIVGLG--NIGLETAKLLKAFKVSKILYTSRRVKEE----------GTALGAQL---VPLDTLCAESDFIFVT 1017 (1128)
Q Consensus 954 L~gktvGIIG~G--~IG~~vA~~l~afG~~Vi~~d~~~~~~~----------~~~~g~~~---~~l~ell~~sDvV~l~ 1017 (1128)
+.|++|++||-+ ++.+..+..+..||++|.+..|..-... ++..|... .++++.++.+|||..-
T Consensus 153 l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 231 (331)
T PRK02102 153 LKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTD 231 (331)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 789999999997 8889999999999999988876543221 11234432 4799999999999974
No 292
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.86 E-value=0.052 Score=55.19 Aligned_cols=106 Identities=20% Similarity=0.272 Sum_probs=71.0
Q ss_pred EEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc--------------Ch-HhhhccCCEEEEecCCCc
Q psy13054 959 VGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV--------------PL-DTLCAESDFIFVTCALTK 1022 (1128)
Q Consensus 959 vGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~--------------~l-~ell~~sDvV~l~lPlt~ 1022 (1128)
|+|+|.|.||..+|-+|+..|.+|.++.++. ..+ ..+.|.+.. +. .+-....|+|++++.. .
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa-~ 78 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA-Y 78 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG-G
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc-c
Confidence 6899999999999999988999999998666 322 233333211 11 2467889999999884 4
Q ss_pred ccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE
Q psy13054 1023 DTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128)
Q Consensus 1023 ~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128)
++...+.. .-...++++.+|-.--| +-.++.+.+.+...++.++
T Consensus 79 ~~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g 122 (151)
T PF02558_consen 79 QLEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGG 122 (151)
T ss_dssp GHHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEE
T ss_pred chHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEE
Confidence 45555543 44455667777777666 4456666667656566554
No 293
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=93.75 E-value=0.31 Score=55.90 Aligned_cols=116 Identities=21% Similarity=0.224 Sum_probs=80.4
Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-h-----------hhcC-------------Ccc-cChHhhhc
Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-G-----------TALG-------------AQL-VPLDTLCA 1009 (1128)
Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~-----------~~~g-------------~~~-~~l~ell~ 1009 (1128)
-++|||||.|.||+.+|..+..-|..|+.+|.+..... + .+.| ++. .++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 47899999999999999999887799999998743211 0 0111 011 1122 689
Q ss_pred cCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCC
Q psy13054 1010 ESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIP 1075 (1128)
Q Consensus 1010 ~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~ 1075 (1128)
.||+|+=.+|.+-+.++-+=++.=+..||+++|=.-.++ +.-.++.++++. +=...++=.|-+
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs--l~it~ia~~~~r-per~iG~HFfNP 144 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS--LSITELAEALKR-PERFIGLHFFNP 144 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC--CCHHHHHHHhCC-chhEEEEeccCC
Confidence 999999999999888876656666777899998643333 456777788743 334556655543
No 294
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.63 E-value=0.038 Score=65.22 Aligned_cols=49 Identities=16% Similarity=0.448 Sum_probs=40.6
Q ss_pred CHHHHhhcCCEEEEecCCC-cccccccCHHHHhcCCCCcEEEEec--CCCcc
Q psy13054 313 PLDTLCAESDFIFVTCALT-KDTEQLIGRKQFSLMKPTAILINTS--RGGLL 361 (1128)
Q Consensus 313 sLdeLl~~SDiVslh~PLT-~~T~~lIn~~~l~~MK~gaiLINta--RG~lV 361 (1128)
++++.++++|+|+.+++.+ ..+.++|+++.+++||+++++|++| .|+.+
T Consensus 223 ~l~~~l~~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~GG~~ 274 (370)
T TIGR00518 223 EIEDAVKRADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQGGCV 274 (370)
T ss_pred HHHHHHccCCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEecCCCCCc
Confidence 5778899999999998764 3467799999999999999999987 44443
No 295
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.56 E-value=0.16 Score=59.80 Aligned_cols=96 Identities=14% Similarity=0.219 Sum_probs=64.9
Q ss_pred CCeEEEEEcChhhHHHHHHHhhCC-------CEEEEEeCCCCc-----hh-hhh--c------C------Ccc-cChHhh
Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFK-------VSKILYTSRRVK-----EE-GTA--L------G------AQL-VPLDTL 1007 (1128)
Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG-------~~Vi~~d~~~~~-----~~-~~~--~------g------~~~-~~l~el 1007 (1128)
-.+|+|||.|..|.++|..|..-| .+|..|.++... .+ ..+ . + +.. .+++++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 358999999999999999997554 789888765431 11 110 0 1 111 368889
Q ss_pred hccCCEEEEecCCCcccccccCHHHHc--cCCCCcEEEEcCCCcccCH
Q psy13054 1008 CAESDFIFVTCALTKDTEQLIGRKQFS--LMKPTAILVNTSRGGLLDQ 1053 (1128)
Q Consensus 1008 l~~sDvV~l~lPlt~~T~~li~~~~l~--~mk~ga~lIN~aRG~lVde 1053 (1128)
++.+|+|++++| ....+.++.+ .-. .+++++++|+++-|=-.++
T Consensus 91 v~~aDiIvlAVP-sq~l~~vl~~-l~~~~~l~~~~~iIS~aKGIe~~t 136 (365)
T PTZ00345 91 VEDADLLIFVIP-HQFLESVLSQ-IKENNNLKKHARAISLTKGIIVEN 136 (365)
T ss_pred HhcCCEEEEEcC-hHHHHHHHHH-hccccccCCCCEEEEEeCCcccCC
Confidence 999999999999 3344444421 112 4566889999988855443
No 296
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.51 E-value=0.4 Score=56.24 Aligned_cols=135 Identities=17% Similarity=0.252 Sum_probs=95.0
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcC---------------------Ccc-cChHhhhccCCEE
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALG---------------------AQL-VPLDTLCAESDFI 1014 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g---------------------~~~-~~l~ell~~sDvV 1014 (1128)
++|.|+|.|.+|...+-.+..+|.+|+.+|....+-+.-..| ... .+.++.++.||++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 478999999999999999999999999998766543311111 112 2677889999999
Q ss_pred EEecCCCcccccccCH--------HHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEec-cCCCCCCCCCccc
Q psy13054 1015 FVTCALTKDTEQLIGR--------KQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDV-MIPEPLPADHPLV 1085 (1128)
Q Consensus 1015 ~l~lPlt~~T~~li~~--------~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV-~e~EPl~~~~pL~ 1085 (1128)
++++|-.+.-.|-+|- +..+.++..+++|+=|.-.+=..+.+.+-+.+..-.. -.+| +-||=|-+.+.+.
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~Av~ 159 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSAVY 159 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcchhh
Confidence 9999966655555553 3456677779999999888877777776655543222 2333 5677777777666
Q ss_pred cC---CCeEE
Q psy13054 1086 QL---DNCVL 1092 (1128)
Q Consensus 1086 ~~---pNvil 1092 (1128)
+. +++++
T Consensus 160 D~~~PdRIVi 169 (414)
T COG1004 160 DFLYPDRIVI 169 (414)
T ss_pred hccCCCeEEE
Confidence 53 45654
No 297
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=93.47 E-value=0.82 Score=53.27 Aligned_cols=92 Identities=15% Similarity=0.226 Sum_probs=61.7
Q ss_pred cCCCeEEEEEcC--hhhHHHHHHHhhCCCEEEEEeCCCCchh----------hhhcCCcc---cChHhhhccCCEEEEec
Q psy13054 954 LKGATVGIVGLG--NIGLETAKLLKAFKVSKILYTSRRVKEE----------GTALGAQL---VPLDTLCAESDFIFVTC 1018 (1128)
Q Consensus 954 L~gktvGIIG~G--~IG~~vA~~l~afG~~Vi~~d~~~~~~~----------~~~~g~~~---~~l~ell~~sDvV~l~l 1018 (1128)
+.|++|++||-+ ++.+..+..+..||++|.+..|..-.+. +...|.+. .++++.++.+|+|..-.
T Consensus 153 l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~ 232 (332)
T PRK04284 153 YKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTDV 232 (332)
T ss_pred cCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECC
Confidence 678999999975 8889999999999999998877532221 11234322 48999999999999742
Q ss_pred C--CCc------c-----cccccCHHHHccCC-CCcEEEEc
Q psy13054 1019 A--LTK------D-----TEQLIGRKQFSLMK-PTAILVNT 1045 (1128)
Q Consensus 1019 P--lt~------~-----T~~li~~~~l~~mk-~ga~lIN~ 1045 (1128)
= ... + -...++++.++.+| |+++|.-+
T Consensus 233 w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHp 273 (332)
T PRK04284 233 WVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHC 273 (332)
T ss_pred cccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECC
Confidence 1 000 0 12235667777765 46666554
No 298
>PLN02527 aspartate carbamoyltransferase
Probab=93.46 E-value=1 Score=51.82 Aligned_cols=92 Identities=22% Similarity=0.314 Sum_probs=61.1
Q ss_pred cCCCeEEEEEcC---hhhHHHHHHHhhC-CCEEEEEeCCCCch--h----hhhcCCcc---cChHhhhccCCEEEEecCC
Q psy13054 954 LKGATVGIVGLG---NIGLETAKLLKAF-KVSKILYTSRRVKE--E----GTALGAQL---VPLDTLCAESDFIFVTCAL 1020 (1128)
Q Consensus 954 L~gktvGIIG~G---~IG~~vA~~l~af-G~~Vi~~d~~~~~~--~----~~~~g~~~---~~l~ell~~sDvV~l~lPl 1020 (1128)
+.|++|++||-+ ++.+..+..+..| |+++.+..|..-.. . +.+.|... .++++.++.+|||....-.
T Consensus 149 l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~q 228 (306)
T PLN02527 149 LDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRIQ 228 (306)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCcc
Confidence 679999999976 6788888888887 99998887654211 1 12234432 4899999999999984321
Q ss_pred Cc------c------cccccCHHHHccCCCCcEEEEc
Q psy13054 1021 TK------D------TEQLIGRKQFSLMKPTAILVNT 1045 (1128)
Q Consensus 1021 t~------~------T~~li~~~~l~~mk~ga~lIN~ 1045 (1128)
.+ + -...++++.++.+|++++|.-+
T Consensus 229 ~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHc 265 (306)
T PLN02527 229 RERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHP 265 (306)
T ss_pred hhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECC
Confidence 00 0 1134566666666666666533
No 299
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=93.46 E-value=0.16 Score=59.55 Aligned_cols=86 Identities=20% Similarity=0.263 Sum_probs=56.1
Q ss_pred CeEEEEEc-ChhhHHHHHHHhhC-CCEEE-EEeCCCCchh-hh-hc----C-----CcccChHhhhccCCEEEEecCCCc
Q psy13054 957 ATVGIVGL-GNIGLETAKLLKAF-KVSKI-LYTSRRVKEE-GT-AL----G-----AQLVPLDTLCAESDFIFVTCALTK 1022 (1128)
Q Consensus 957 ktvGIIG~-G~IG~~vA~~l~af-G~~Vi-~~d~~~~~~~-~~-~~----g-----~~~~~l~ell~~sDvV~l~lPlt~ 1022 (1128)
.+|+|||. |.+|+.+++.|... +.+++ +++++..... .. .. + +...+.++++.++|+|++|+|..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~- 79 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG- 79 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence 37999998 99999999999887 77877 4465542221 11 11 1 11124566767899999999944
Q ss_pred ccccccCHHHHccC-CCCcEEEEcCCC
Q psy13054 1023 DTEQLIGRKQFSLM-KPTAILVNTSRG 1048 (1128)
Q Consensus 1023 ~T~~li~~~~l~~m-k~ga~lIN~aRG 1048 (1128)
. .++....+ +.|..+|+.|-.
T Consensus 80 ~-----s~~~~~~~~~~G~~VIDlS~~ 101 (346)
T TIGR01850 80 V-----SAELAPELLAAGVKVIDLSAD 101 (346)
T ss_pred H-----HHHHHHHHHhCCCEEEeCChh
Confidence 2 23333333 568888888733
No 300
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=93.41 E-value=0.19 Score=58.30 Aligned_cols=114 Identities=21% Similarity=0.215 Sum_probs=72.0
Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCC-CEEEEEeCCCCchh--hh----h---cC----Ccc-cChHhhhccCCEEEEecC
Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFK-VSKILYTSRRVKEE--GT----A---LG----AQL-VPLDTLCAESDFIFVTCA 1019 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG-~~Vi~~d~~~~~~~--~~----~---~g----~~~-~~l~ell~~sDvV~l~lP 1019 (1128)
..++|+|||.|.+|..+|..+...| ++++++|...+... .. . .+ +.. .+. +.++.||+|+++.-
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~tag 83 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTAG 83 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECCC
Confidence 4478999999999999999988777 48999997766332 11 0 11 121 245 56799999999773
Q ss_pred CCc----------------ccccccCH--HHHccCCCCcEEEEcCCCcccCHHHHHHHHh--cCCceEEE
Q psy13054 1020 LTK----------------DTEQLIGR--KQFSLMKPTAILVNTSRGGLLDQEALVEFLK--DKKIGGAG 1069 (1128)
Q Consensus 1020 lt~----------------~T~~li~~--~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~--~g~i~gaa 1069 (1128)
... ++..++.+ +.+....|.+.+||.+-..-+-...+.+... ..++.|.+
T Consensus 84 ~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 84 LTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 211 11111210 2345556788999998655555555555432 34677766
No 301
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.39 E-value=0.12 Score=63.13 Aligned_cols=108 Identities=17% Similarity=0.166 Sum_probs=70.9
Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc---ChHhhhccCCEEEEecCCCccccc---
Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV---PLDTLCAESDFIFVTCALTKDTEQ--- 1026 (1128)
Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~---~l~ell~~sDvV~l~lPlt~~T~~--- 1026 (1128)
..|+++.|+|+|.+|.+.++.|+..|++|+++|....... ..+.|+... ...+.++.+|+|+..- .-+.+.-
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~Sp-Gi~~~~p~~~ 88 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSP-GFRPTAPVLA 88 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECC-CCCCCCHHHH
Confidence 4789999999999999999999999999999986543322 334466543 2345677899877654 3333221
Q ss_pred --------ccCHHHHc-cC--------CCCcEEEEcCCCcccCHHHHHHHHhc
Q psy13054 1027 --------LIGRKQFS-LM--------KPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128)
Q Consensus 1027 --------li~~~~l~-~m--------k~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128)
++++-.|. .. +...+=|-=+-|+.-...-+...|+.
T Consensus 89 ~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~ 141 (488)
T PRK03369 89 AAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA 141 (488)
T ss_pred HHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 33332332 11 11345566678888777777777765
No 302
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=93.39 E-value=0.12 Score=51.53 Aligned_cols=100 Identities=23% Similarity=0.200 Sum_probs=55.6
Q ss_pred eEEEEEc-ChhhHHHHHHHhh-CCCEEEEEeCCCCch-hh---------hhcCCcc-cChHhhhccCCEEEEecCCCccc
Q psy13054 958 TVGIVGL-GNIGLETAKLLKA-FKVSKILYTSRRVKE-EG---------TALGAQL-VPLDTLCAESDFIFVTCALTKDT 1024 (1128)
Q Consensus 958 tvGIIG~-G~IG~~vA~~l~a-fG~~Vi~~d~~~~~~-~~---------~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T 1024 (1128)
+|+|+|+ |+||+.+++.+.. -|+++++.-.+.+.+ .. ...++.. .++++++.++|+|+-.. ..+.+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~~ 80 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDAV 80 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHHh
Confidence 6999999 9999999999987 688866654444411 11 1223332 47999999999988655 22223
Q ss_pred ccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhc
Q psy13054 1025 EQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128)
Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128)
...+ -..++.+.-+|--..|---.+.+.++.+.+
T Consensus 81 ~~~~----~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~ 114 (124)
T PF01113_consen 81 YDNL----EYALKHGVPLVIGTTGFSDEQIDELEELAK 114 (124)
T ss_dssp HHHH----HHHHHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred HHHH----HHHHhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence 2222 111233555555445553333344444433
No 303
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=93.35 E-value=0.1 Score=51.44 Aligned_cols=86 Identities=20% Similarity=0.251 Sum_probs=51.4
Q ss_pred eEEEEE-cChhhHHHHHHHh-hCCCEEEEEeCCCC-chh--hhhc----CCccc---C-hHhhhccCCEEEEecCCCccc
Q psy13054 958 TVGIVG-LGNIGLETAKLLK-AFKVSKILYTSRRV-KEE--GTAL----GAQLV---P-LDTLCAESDFIFVTCALTKDT 1024 (1128)
Q Consensus 958 tvGIIG-~G~IG~~vA~~l~-afG~~Vi~~d~~~~-~~~--~~~~----g~~~~---~-l~ell~~sDvV~l~lPlt~~T 1024 (1128)
+||||| .|.+|+.+.++|. ...++++....+.. ... .... +.... + -.+.+.++|+|+.|+|....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~- 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGAS- 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHH-
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHH-
Confidence 699999 9999999999996 45666555444444 111 1111 11111 1 22445999999999994422
Q ss_pred ccccCHHHHccCCCCcEEEEcCCC
Q psy13054 1025 EQLIGRKQFSLMKPTAILVNTSRG 1048 (1128)
Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~aRG 1048 (1128)
+.+.. .. .++|..+|+.|..
T Consensus 80 ~~~~~-~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 80 KELAP-KL---LKAGIKVIDLSGD 99 (121)
T ss_dssp HHHHH-HH---HHTTSEEEESSST
T ss_pred HHHHH-HH---hhCCcEEEeCCHH
Confidence 22221 11 4778899988654
No 304
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.26 E-value=0.091 Score=61.28 Aligned_cols=80 Identities=24% Similarity=0.234 Sum_probs=56.2
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCC---------------------chh-h----hh--cCCc---
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRV---------------------KEE-G----TA--LGAQ--- 1000 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~---------------------~~~-~----~~--~g~~--- 1000 (1128)
.|.+++|.|||.|.+|..+|+.|...|. ++.++|+..- +.+ + .+ ..++
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~ 100 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVP 100 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEE
Confidence 6899999999999999999999999997 7777887541 111 0 00 0111
Q ss_pred ------ccChHhhhccCCEEEEecCCCcccccccCHHHH
Q psy13054 1001 ------LVPLDTLCAESDFIFVTCALTKDTEQLIGRKQF 1033 (1128)
Q Consensus 1001 ------~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l 1033 (1128)
..+++++++++|+|+.++ .+.+++-++|.-..
T Consensus 101 ~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~~ 138 (338)
T PRK12475 101 VVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLSQ 138 (338)
T ss_pred EeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHHH
Confidence 113567888889888877 56777777765433
No 305
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=93.20 E-value=0.18 Score=56.59 Aligned_cols=63 Identities=19% Similarity=0.247 Sum_probs=45.0
Q ss_pred CeEEEEEc-ChhhHHHHHHHhhC-CCEEEE-EeCCCCchh-hhhcCCc-ccChHhhhccCCEEEEecC
Q psy13054 957 ATVGIVGL-GNIGLETAKLLKAF-KVSKIL-YTSRRVKEE-GTALGAQ-LVPLDTLCAESDFIFVTCA 1019 (1128)
Q Consensus 957 ktvGIIG~-G~IG~~vA~~l~af-G~~Vi~-~d~~~~~~~-~~~~g~~-~~~l~ell~~sDvV~l~lP 1019 (1128)
.+|+|+|+ |+||+.+++.+... ++++++ +|+...... ....++. +.+++++++.+|+|+.++|
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~ 69 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT 69 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC
Confidence 37999998 99999999998764 788776 444333221 1223332 3589999989999998776
No 306
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=93.14 E-value=0.045 Score=63.36 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=37.2
Q ss_pred CHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEec
Q psy13054 313 PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS 356 (1128)
Q Consensus 313 sLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINta 356 (1128)
++++|+..+|+|+.| |+.+.|+.|++.+.+|+++++|+-.-
T Consensus 68 ~~eeLl~~vDiVve~---Tp~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 68 TLEDLLEKVDIVVDA---TPGGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred CHHHHhhcCCEEEEC---CCCCCChhhHHHHHhCCcCEEEECCC
Confidence 799999999999976 57899999999999999999999754
No 307
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=93.13 E-value=0.12 Score=57.96 Aligned_cols=115 Identities=17% Similarity=0.238 Sum_probs=75.2
Q ss_pred EEEEEc-ChhhHHHHHHHhhCC----CEEEEEeCCCCchh--hhh------c--C--Ccc-cChHhhhccCCEEEEecCC
Q psy13054 959 VGIVGL-GNIGLETAKLLKAFK----VSKILYTSRRVKEE--GTA------L--G--AQL-VPLDTLCAESDFIFVTCAL 1020 (1128)
Q Consensus 959 vGIIG~-G~IG~~vA~~l~afG----~~Vi~~d~~~~~~~--~~~------~--g--~~~-~~l~ell~~sDvV~l~lPl 1020 (1128)
|+|||. |.+|..+|..+...| -++..||....+.. ..+ . . +.. .++.+.++.||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 589999 999999999998777 78999997665433 111 0 1 111 2457899999999996532
Q ss_pred Cccccc------------ccC--HHHHccCCCCcEEEEcCCCcccCHHHHHHH--HhcCCceEEE-EeccC
Q psy13054 1021 TKDTEQ------------LIG--RKQFSLMKPTAILVNTSRGGLLDQEALVEF--LKDKKIGGAG-LDVMI 1074 (1128)
Q Consensus 1021 t~~T~~------------li~--~~~l~~mk~ga~lIN~aRG~lVde~aL~~a--L~~g~i~gaa-LDV~e 1074 (1128)
+...+ ++. .+.+++..|++++||.+-..=+-...+.+. +...++.|.+ +|...
T Consensus 81 -~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~~r 150 (263)
T cd00650 81 -GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDPIR 150 (263)
T ss_pred -CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchHHH
Confidence 11111 111 123455568999999974444444455555 4667888988 88643
No 308
>PLN02342 ornithine carbamoyltransferase
Probab=93.13 E-value=1.2 Score=52.11 Aligned_cols=92 Identities=15% Similarity=0.195 Sum_probs=62.7
Q ss_pred cCCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh------hhhcC---Ccc-cChHhhhccCCEEEEec----
Q psy13054 954 LKGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE------GTALG---AQL-VPLDTLCAESDFIFVTC---- 1018 (1128)
Q Consensus 954 L~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~------~~~~g---~~~-~~l~ell~~sDvV~l~l---- 1018 (1128)
+.|++|++||= .++.+..+..+..||++|.++.|..-.+. +.+.| +.. .++++.++.+|||..-.
T Consensus 192 l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s~ 271 (348)
T PLN02342 192 LEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWASM 271 (348)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCcccc
Confidence 67999999997 46888888889999999988876653321 12233 222 47999999999999753
Q ss_pred CCCcc--------cccccCHHHHccCCCCcEEEEc
Q psy13054 1019 ALTKD--------TEQLIGRKQFSLMKPTAILVNT 1045 (1128)
Q Consensus 1019 Plt~~--------T~~li~~~~l~~mk~ga~lIN~ 1045 (1128)
-..++ ....++++.++.+|++++|.-+
T Consensus 272 ~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHp 306 (348)
T PLN02342 272 GQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHC 306 (348)
T ss_pred ccchhhHHHHHhccCCccCHHHHhccCCCcEEeCC
Confidence 11111 1134577777777777766554
No 309
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=93.08 E-value=0.2 Score=57.55 Aligned_cols=91 Identities=19% Similarity=0.261 Sum_probs=60.8
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchh--hhhc-------CC--cc-cChHhhhccCCEEEEecCCCc
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEE--GTAL-------GA--QL-VPLDTLCAESDFIFVTCALTK 1022 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~--~~~~-------g~--~~-~~l~ell~~sDvV~l~lPlt~ 1022 (1128)
++|+|||.|.+|+.+|..|...|. +++++|....+.. ..+. +. .. ..-.+.++.||+|+++.....
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~ 80 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ 80 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence 479999999999999999988884 7999998766544 1111 11 11 122345789999999887431
Q ss_pred c---cc--------cccC--HHHHccCCCCcEEEEcCC
Q psy13054 1023 D---TE--------QLIG--RKQFSLMKPTAILVNTSR 1047 (1128)
Q Consensus 1023 ~---T~--------~li~--~~~l~~mk~ga~lIN~aR 1047 (1128)
. +| .++. .+.+.+..|.+++|+++-
T Consensus 81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN 118 (306)
T cd05291 81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN 118 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 1 11 1110 123556678999999983
No 310
>PLN02256 arogenate dehydrogenase
Probab=93.07 E-value=0.11 Score=59.77 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=32.4
Q ss_pred CCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCC
Q psy13054 699 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128)
Q Consensus 699 l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128)
-++++|||||+|.||+.+|+.++.+|.++++|+++
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~ 68 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRS 68 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECc
Confidence 36789999999999999999999999999999975
No 311
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=93.02 E-value=0.07 Score=60.49 Aligned_cols=105 Identities=20% Similarity=0.158 Sum_probs=77.5
Q ss_pred eeCCCCCCCCccccccCCccccceeecccccccc---cccccCCccc-CHHHHhhcCCEEEEecCCCcccccccC--HHH
Q psy13054 269 FLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERS---NGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIG--RKQ 342 (1128)
Q Consensus 269 ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~---~~~~~g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn--~~~ 342 (1128)
++|+|..|...|++....+ ..+..|++.+.. .....|.+.+ +..|+.++||+|+.++|-.++-+..+- ...
T Consensus 5 fIGLG~MG~pmA~~L~~aG---~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~ 81 (286)
T COG2084 5 FIGLGIMGSPMAANLLKAG---HEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGL 81 (286)
T ss_pred EEcCchhhHHHHHHHHHCC---CEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccch
Confidence 5677777777766432221 234445543322 1234466655 778999999999999999999877765 678
Q ss_pred HhcCCCCcEEEEecCCCccCHHHHHHHHHcCCee
Q psy13054 343 FSLMKPTAILINTSRGGLLDQEALVEFLKDKKIG 376 (1128)
Q Consensus 343 l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~Ia 376 (1128)
++.||||.++|+.+=-+--....+.++++.+-+.
T Consensus 82 ~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~ 115 (286)
T COG2084 82 LEGLKPGAIVIDMSTISPETARELAAALAAKGLE 115 (286)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc
Confidence 8999999999999988888888899999987654
No 312
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=92.89 E-value=0.4 Score=55.63 Aligned_cols=86 Identities=16% Similarity=0.222 Sum_probs=64.5
Q ss_pred CCeEEEEEcChhhHHHHHHHhh-CCC-EEEEEeCCCCchh--h----hhcC--Ccc-cChHhhhccCCEEEEecCCCccc
Q psy13054 956 GATVGIVGLGNIGLETAKLLKA-FKV-SKILYTSRRVKEE--G----TALG--AQL-VPLDTLCAESDFIFVTCALTKDT 1024 (1128)
Q Consensus 956 gktvGIIG~G~IG~~vA~~l~a-fG~-~Vi~~d~~~~~~~--~----~~~g--~~~-~~l~ell~~sDvV~l~lPlt~~T 1024 (1128)
-+++||||.|..++.-++.++. ++. +|.+|+++....+ . ...+ +.. .+.+++++.||+|+.+.|.++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~-- 207 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE-- 207 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence 4679999999999999998864 444 6778877666554 1 1222 223 378999999999999999776
Q ss_pred ccccCHHHHccCCCCcEEEEcCC
Q psy13054 1025 EQLIGRKQFSLMKPTAILVNTSR 1047 (1128)
Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~aR 1047 (1128)
-++..+.+ |||+.+..+|-
T Consensus 208 -Pil~~~~l---~~G~hI~aiGa 226 (330)
T COG2423 208 -PVLKAEWL---KPGTHINAIGA 226 (330)
T ss_pred -CeecHhhc---CCCcEEEecCC
Confidence 57776555 59999999984
No 313
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=92.83 E-value=1 Score=54.30 Aligned_cols=155 Identities=16% Similarity=0.093 Sum_probs=89.5
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCC--------Cch-hh--------------hh-----cCCcccCh
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR--------VKE-EG--------------TA-----LGAQLVPL 1004 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~--------~~~-~~--------------~~-----~g~~~~~l 1004 (1128)
++.|+||.|=|+|++|+..|+.|..+|++|+.+.+.. -.. .. .+ .+.++.+-
T Consensus 234 ~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~ 313 (454)
T PTZ00079 234 SLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPG 313 (454)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeCC
Confidence 4899999999999999999999999999999443332 000 00 00 12334444
Q ss_pred Hhhh-ccCCEEEEecCCCcccccccCHHHHccC-CCCcEEEE-cCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCC
Q psy13054 1005 DTLC-AESDFIFVTCALTKDTEQLIGRKQFSLM-KPTAILVN-TSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPAD 1081 (1128)
Q Consensus 1005 ~ell-~~sDvV~l~lPlt~~T~~li~~~~l~~m-k~ga~lIN-~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~ 1081 (1128)
++++ -.|||.+-|. |.+.|+.+..+.+ +.++.+|- -+-+.+ ..+ -.+.|++..|..+ =|...+-=--.-
T Consensus 314 ~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~-t~e-A~~~L~~~GI~~~-PD~~aNAGGV~v 385 (454)
T PTZ00079 314 KKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPT-TIE-ATHLFKKNGVIFC-PGKAANAGGVAI 385 (454)
T ss_pred cCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCC-CHH-HHHHHHHCCcEEE-ChhhhcCCCeee
Confidence 4444 3588888554 6678888887766 55555554 455554 444 4466777766554 232222100000
Q ss_pred CccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHH
Q psy13054 1082 HPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRG 1118 (1128)
Q Consensus 1082 ~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~ 1118 (1128)
+-|=-..|.. +..|.-++..+++-+++.+...+.
T Consensus 386 S~~E~~Qn~~---~~~W~~eeV~~~L~~~M~~~~~~~ 419 (454)
T PTZ00079 386 SGLEMSQNAA---RLQWTAEEVDEKLREIMKSIFEAC 419 (454)
T ss_pred ehHHhhhhhc---ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 1111122332 566666777777666665544433
No 314
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=92.72 E-value=0.32 Score=55.90 Aligned_cols=86 Identities=10% Similarity=0.068 Sum_probs=61.5
Q ss_pred CCeEEEEEcChhhHHHHHHHhhC-CC-EEEEEeCCCCchh--hhh----cCC--cc-cChHhhhccCCEEEEecCCCccc
Q psy13054 956 GATVGIVGLGNIGLETAKLLKAF-KV-SKILYTSRRVKEE--GTA----LGA--QL-VPLDTLCAESDFIFVTCALTKDT 1024 (1128)
Q Consensus 956 gktvGIIG~G~IG~~vA~~l~af-G~-~Vi~~d~~~~~~~--~~~----~g~--~~-~~l~ell~~sDvV~l~lPlt~~T 1024 (1128)
-+++||||.|..|+.-++.+... .. +|.+|+++..+.. ..+ .++ .. .+.++++++||+|+.+.|.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~--- 193 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD--- 193 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC---
Confidence 47899999999999888777543 33 6788887766544 111 243 22 37999999999999988844
Q ss_pred ccccCHHHHccCCCCcEEEEcCC
Q psy13054 1025 EQLIGRKQFSLMKPTAILVNTSR 1047 (1128)
Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~aR 1047 (1128)
.-+|+.+. +|||+.++-+|.
T Consensus 194 ~P~~~~~~---l~pg~hV~aiGs 213 (301)
T PRK06407 194 TPIFNRKY---LGDEYHVNLAGS 213 (301)
T ss_pred CcEecHHH---cCCCceEEecCC
Confidence 46787664 478877776664
No 315
>PRK07589 ornithine cyclodeaminase; Validated
Probab=92.70 E-value=0.33 Score=56.85 Aligned_cols=88 Identities=14% Similarity=0.179 Sum_probs=60.2
Q ss_pred CCeEEEEEcChhhHHHHHHHh-hCCC-EEEEEeCCCCchh--h---hhcCCc--c-cChHhhhccCCEEEEecCCCcccc
Q psy13054 956 GATVGIVGLGNIGLETAKLLK-AFKV-SKILYTSRRVKEE--G---TALGAQ--L-VPLDTLCAESDFIFVTCALTKDTE 1025 (1128)
Q Consensus 956 gktvGIIG~G~IG~~vA~~l~-afG~-~Vi~~d~~~~~~~--~---~~~g~~--~-~~l~ell~~sDvV~l~lPlt~~T~ 1025 (1128)
-++++|||.|..++.-++.+. -+.. +|.+|++...+.+ . .+.++. . .++++++++||+|+.+.|.+ ++.
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCC
Confidence 368999999999988876553 3333 6778877665543 1 112332 2 37999999999999998743 222
Q ss_pred cccCHHHHccCCCCcEEEEcCC
Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSR 1047 (1128)
Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aR 1047 (1128)
-+|..+ .+|||+.++-+|.
T Consensus 208 Pvl~~~---~lkpG~hV~aIGs 226 (346)
T PRK07589 208 TILTDD---MVEPGMHINAVGG 226 (346)
T ss_pred ceecHH---HcCCCcEEEecCC
Confidence 456654 4589998877653
No 316
>PRK06223 malate dehydrogenase; Reviewed
Probab=92.54 E-value=0.25 Score=56.63 Aligned_cols=114 Identities=18% Similarity=0.254 Sum_probs=69.4
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchhh--hh---c----C--Cc--c-cChHhhhccCCEEEEecC--
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEEG--TA---L----G--AQ--L-VPLDTLCAESDFIFVTCA-- 1019 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~~--~~---~----g--~~--~-~~l~ell~~sDvV~l~lP-- 1019 (1128)
++|+|||.|.+|..+|..+...|. +|+++|........ .+ . + .+ . .+. +.++.||+|+++..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~p 81 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGVP 81 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCCC
Confidence 589999999999999999987654 99999976544321 11 1 1 11 1 234 45799999999863
Q ss_pred CCcc---------cccccCH--HHHccCCCCcEEEEcCCCcccCHHHHHHH--HhcCCceEEE--Ee
Q psy13054 1020 LTKD---------TEQLIGR--KQFSLMKPTAILVNTSRGGLLDQEALVEF--LKDKKIGGAG--LD 1071 (1128)
Q Consensus 1020 lt~~---------T~~li~~--~~l~~mk~ga~lIN~aRG~lVde~aL~~a--L~~g~i~gaa--LD 1071 (1128)
..+. +..++.. +.+....+.+++|+.+-..=+-...+.+. +...++.|.+ ||
T Consensus 82 ~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~gt~ld 148 (307)
T PRK06223 82 RKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMAGVLD 148 (307)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeCCCcH
Confidence 2111 1111210 12334446788888876555555555553 2234677764 55
No 317
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=92.50 E-value=0.056 Score=58.79 Aligned_cols=60 Identities=10% Similarity=0.163 Sum_probs=47.6
Q ss_pred CHHHHhhc--CCEEEEecCCCcc---cccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHc
Q psy13054 313 PLDTLCAE--SDFIFVTCALTKD---TEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKD 372 (1128)
Q Consensus 313 sLdeLl~~--SDiVslh~PLT~~---T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~s 372 (1128)
++++++++ .|+|++++|.+.. ...+.......-|...++.+|+.||.+|+.++|..+|..
T Consensus 137 ~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~~ 201 (213)
T PRK05472 137 ELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQT 201 (213)
T ss_pred HHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHHHH
Confidence 68888866 9999999998765 333444444556677889999999999999999999874
No 318
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=92.47 E-value=0.12 Score=48.39 Aligned_cols=34 Identities=35% Similarity=0.484 Sum_probs=28.4
Q ss_pred EEEEEecChhhHHHHHHHhhCC---CeEEEEcCCCcc
Q psy13054 703 TVGIVGLGNIGLETAKLLKAFK---VSKILYTSRRVK 736 (1128)
Q Consensus 703 tvGIiG~G~IG~~va~r~~afg---~~vi~y~~~~~~ 736 (1128)
||||||+|++|+++++.+..-| .++..+.+|+++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~ 37 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPE 37 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHH
Confidence 6999999999999999999999 888856444443
No 319
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=92.41 E-value=0.57 Score=48.72 Aligned_cols=92 Identities=17% Similarity=0.281 Sum_probs=65.4
Q ss_pred CCCeEEEEE--cChhhHHHHHHHhhCCCEEEEEeCCCC--ch--h-h-------hhcCC--cc-cChHhhhccCCEEEEe
Q psy13054 955 KGATVGIVG--LGNIGLETAKLLKAFKVSKILYTSRRV--KE--E-G-------TALGA--QL-VPLDTLCAESDFIFVT 1017 (1128)
Q Consensus 955 ~gktvGIIG--~G~IG~~vA~~l~afG~~Vi~~d~~~~--~~--~-~-------~~~g~--~~-~~l~ell~~sDvV~l~ 1017 (1128)
.|++|++|| .+++.+.++..+..||+++.++.|..- .. . . ...|. +. .+++|.++++|||..-
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 388999999 389999999999999999888877652 12 1 1 11232 22 4899999999999865
Q ss_pred cCCC---cc--------cccccCHHHHccCCCCcEEEEcC
Q psy13054 1018 CALT---KD--------TEQLIGRKQFSLMKPTAILVNTS 1046 (1128)
Q Consensus 1018 lPlt---~~--------T~~li~~~~l~~mk~ga~lIN~a 1046 (1128)
.--. .+ ....++++.++.+|++++|.-+.
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 5441 11 11457889999999999888774
No 320
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.39 E-value=0.16 Score=55.89 Aligned_cols=67 Identities=18% Similarity=0.227 Sum_probs=50.7
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhh-hh--cCCcc--------cChHhh-hccCCEEEEecCCCcc
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG-TA--LGAQL--------VPLDTL-CAESDFIFVTCALTKD 1023 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~-~~--~g~~~--------~~l~el-l~~sDvV~l~lPlt~~ 1023 (1128)
+++.|||+|++|..+|+.|...|+.|++.|....+... .. .+... ..|.++ +.++|+++.....+..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~ 79 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEV 79 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHH
Confidence 57899999999999999999999999999987766442 22 22221 135565 7889999998886544
No 321
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=92.32 E-value=1.6 Score=51.02 Aligned_cols=94 Identities=12% Similarity=0.191 Sum_probs=65.3
Q ss_pred ccCCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCch--hh--------hhcCC--cc-cChHhhhccCCEEEEec
Q psy13054 953 GLKGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKE--EG--------TALGA--QL-VPLDTLCAESDFIFVTC 1018 (1128)
Q Consensus 953 ~L~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~--~~--------~~~g~--~~-~~l~ell~~sDvV~l~l 1018 (1128)
.+.|++|++||= .++.+..+..+..||++|.++.|..-.. .. +..|. .. .++++.++.+|||..-.
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~ 230 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDV 230 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence 378999999998 6888888999999999999987764211 11 11243 22 48999999999999832
Q ss_pred -----CCCc---c------cccccCHHHHccCCCCcEEEEcC
Q psy13054 1019 -----ALTK---D------TEQLIGRKQFSLMKPTAILVNTS 1046 (1128)
Q Consensus 1019 -----Plt~---~------T~~li~~~~l~~mk~ga~lIN~a 1046 (1128)
.... + -...++++.++.+|++++|.-+.
T Consensus 231 w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpL 272 (338)
T PRK02255 231 WYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCL 272 (338)
T ss_pred cHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCC
Confidence 2100 0 12456788888888888776653
No 322
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=92.15 E-value=0.085 Score=59.96 Aligned_cols=73 Identities=14% Similarity=0.080 Sum_probs=51.0
Q ss_pred cCCccc-CHHHHhhcCCEEEEecCCCcccccccC--HHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEe
Q psy13054 307 LGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIG--RKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLD 381 (1128)
Q Consensus 307 ~g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn--~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLD 381 (1128)
.|+... ++.+++++||+|++++|-....+.++. ...++.+++|.++||++=-..=....+.+.+++..+. -+|
T Consensus 38 ~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd 113 (288)
T TIGR01692 38 AGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD 113 (288)
T ss_pred cCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence 344433 899999999999999998777777763 4456788999999999833322335566666654332 355
No 323
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=92.02 E-value=0.16 Score=56.58 Aligned_cols=82 Identities=26% Similarity=0.264 Sum_probs=54.3
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--hh----------------------hc--CCc-----
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--GT----------------------AL--GAQ----- 1000 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~~----------------------~~--g~~----- 1000 (1128)
.|..++|+|||+|.+|..+++.|...|. ++.++|...-... .+ +. .++
T Consensus 29 ~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~ 108 (245)
T PRK05690 29 KLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETIN 108 (245)
T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence 6899999999999999999999998887 5666665432211 00 00 010
Q ss_pred ----ccChHhhhccCCEEEEecCCCcccccccCHHHHcc
Q psy13054 1001 ----LVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSL 1035 (1128)
Q Consensus 1001 ----~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~ 1035 (1128)
...++++++++|+|+.++ .+.+++..+++-..+.
T Consensus 109 ~~i~~~~~~~~~~~~DiVi~~~-D~~~~r~~ln~~~~~~ 146 (245)
T PRK05690 109 ARLDDDELAALIAGHDLVLDCT-DNVATRNQLNRACFAA 146 (245)
T ss_pred ccCCHHHHHHHHhcCCEEEecC-CCHHHHHHHHHHHHHh
Confidence 012346778888888776 4667777777554444
No 324
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=91.95 E-value=0.4 Score=59.34 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=46.4
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcCCcccChHhh---h-ccCCEEEEecCC
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALGAQLVPLDTL---C-AESDFIFVTCAL 1020 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~~l~el---l-~~sDvV~l~lPl 1020 (1128)
.+.+|++.|+|.|.+|++++..|...|++|+++++...+.+ ....+....+++++ . ..+|+|+++.|.
T Consensus 376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~v 449 (529)
T PLN02520 376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSV 449 (529)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccC
Confidence 47899999999999999999999999999998876544333 22222222233322 2 346777777664
No 325
>KOG2653|consensus
Probab=91.95 E-value=1.5 Score=50.56 Aligned_cols=158 Identities=17% Similarity=0.187 Sum_probs=118.8
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh---h-hhcCCc---ccChHhh---hccCCEEEEecCCCccccc
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE---G-TALGAQ---LVPLDTL---CAESDFIFVTCALTKDTEQ 1026 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~---~-~~~g~~---~~~l~el---l~~sDvV~l~lPlt~~T~~ 1026 (1128)
..+|+||++.||+-++-....-|+.|.+|++...+.+ + +..+.. ..|++++ ++.-.+|++.+-...-...
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 4589999999999999999999999999998887754 1 122222 2477776 4567788887776666655
Q ss_pred ccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHH
Q psy13054 1027 LIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDE 1106 (1128)
Q Consensus 1027 li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~ 1106 (1128)
+|. +....|.+|-++|+-+...--|+.--.+.|....|-..+.-|.-.|--....|-+ +-|.+.+++.+
T Consensus 87 ~I~-~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSl----------MpGg~~~Awp~ 155 (487)
T KOG2653|consen 87 FIE-ELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSL----------MPGGSKEAWPH 155 (487)
T ss_pred HHH-HHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCcc----------CCCCChHHHHH
Confidence 664 6778899999999999999999999999999999999999998877633323322 22778888888
Q ss_pred HHHHHHHHHHHHHcCCCCC
Q psy13054 1107 KSSTSAENIIRGYKGEPMI 1125 (1128)
Q Consensus 1107 ~~~~~~~nl~~~l~G~~l~ 1125 (1128)
+-.++..--...-.|+|+.
T Consensus 156 ik~ifq~iaakv~~~epCc 174 (487)
T KOG2653|consen 156 IKDIFQKIAAKVSDGEPCC 174 (487)
T ss_pred HHHHHHHHHHHhcCCCCCe
Confidence 7776655444445677764
No 326
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=91.93 E-value=0.31 Score=56.99 Aligned_cols=64 Identities=19% Similarity=0.261 Sum_probs=44.7
Q ss_pred eEEEEEcChhhHHHHHHHhh-CCCEEEEEeCCCCchh---hhhcC------------------Ccc-cChHhhhccCCEE
Q psy13054 958 TVGIVGLGNIGLETAKLLKA-FKVSKILYTSRRVKEE---GTALG------------------AQL-VPLDTLCAESDFI 1014 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~a-fG~~Vi~~d~~~~~~~---~~~~g------------------~~~-~~l~ell~~sDvV 1014 (1128)
+|||+|+|+||+.+++.+.. -+|++++.....+... +...| +.. .++++++..+|+|
T Consensus 3 kVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDVV 82 (341)
T PRK04207 3 KVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADIV 82 (341)
T ss_pred EEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCEE
Confidence 79999999999999998864 4788888766433111 11111 111 2577888899999
Q ss_pred EEecCCC
Q psy13054 1015 FVTCALT 1021 (1128)
Q Consensus 1015 ~l~lPlt 1021 (1128)
+.|.|..
T Consensus 83 IdaT~~~ 89 (341)
T PRK04207 83 VDATPGG 89 (341)
T ss_pred EECCCch
Confidence 9998743
No 327
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=91.84 E-value=0.67 Score=52.76 Aligned_cols=106 Identities=19% Similarity=0.206 Sum_probs=68.9
Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--hhhcC-----CcccChHhhh--ccCCEEEEecCCCcc
Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--GTALG-----AQLVPLDTLC--AESDFIFVTCALTKD 1023 (1128)
Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~~~~g-----~~~~~l~ell--~~sDvV~l~lPlt~~ 1023 (1128)
..|+++.|+|.|-.+++++.-|+..|+ ++.++++..++.+ +...+ +....+.++- .++|+|++++|..-.
T Consensus 124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~ 203 (283)
T COG0169 124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGMA 203 (283)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCCC
Confidence 578999999999999999999999995 7999998777654 22221 1122333222 269999999996533
Q ss_pred cc---cccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcC
Q psy13054 1024 TE---QLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128)
Q Consensus 1024 T~---~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128)
-. -+++ .+.++++.++.++--... ++.=|..|=+.|
T Consensus 204 ~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~TplL~~A~~~G 242 (283)
T COG0169 204 GPEGDSPVP---AELLPKGAIVYDVVYNPL-ETPLLREARAQG 242 (283)
T ss_pred CCCCCCCCc---HHhcCcCCEEEEeccCCC-CCHHHHHHHHcC
Confidence 32 1333 455667777777655543 344444444434
No 328
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=91.83 E-value=1.9 Score=49.83 Aligned_cols=63 Identities=16% Similarity=0.087 Sum_probs=48.2
Q ss_pred cCCCeEEEEEc---ChhhHHHHHHHhhCCC-EEEEEeCCCCchhhh-hcCCcc-cChHhhhccCCEEEE
Q psy13054 954 LKGATVGIVGL---GNIGLETAKLLKAFKV-SKILYTSRRVKEEGT-ALGAQL-VPLDTLCAESDFIFV 1016 (1128)
Q Consensus 954 L~gktvGIIG~---G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~~~-~~g~~~-~~l~ell~~sDvV~l 1016 (1128)
+.|.+|++||- +++.+..+..+..||+ ++.+..|..-.+... ...++. .++++.++.+|||..
T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~ 223 (310)
T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT 223 (310)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence 67899999998 5999999999999999 888887654322211 112333 479999999999986
No 329
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=91.72 E-value=0.085 Score=58.01 Aligned_cols=150 Identities=22% Similarity=0.167 Sum_probs=87.6
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--hh-------hcC-----------------Cc--c--
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--GT-------ALG-----------------AQ--L-- 1001 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~~-------~~g-----------------~~--~-- 1001 (1128)
.|.+++|.|||+|.+|..+|+.|...|. ++.++|+..-... .+ +.| ++ .
T Consensus 18 ~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~ 97 (228)
T cd00757 18 KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYN 97 (228)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEec
Confidence 6899999999999999999999999998 5666655432111 00 011 11 0
Q ss_pred -----cChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCC
Q psy13054 1002 -----VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPE 1076 (1128)
Q Consensus 1002 -----~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~E 1076 (1128)
.+++++++++|+|+.|+. +++++..+++...+ .+.-+|..+-. | ..|. +-++.+.
T Consensus 98 ~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g~~--------------g-~~g~-v~~~~p~ 157 (228)
T cd00757 98 ERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGAVL--------------G-FEGQ-VTVFIPG 157 (228)
T ss_pred ceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEEec--------------c-CEEE-EEEECCC
Confidence 124567888999888766 66777777755444 34556665421 1 1222 1222221
Q ss_pred --CCCCC-CccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q psy13054 1077 --PLPAD-HPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEP 1123 (1128)
Q Consensus 1077 --Pl~~~-~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~ 1123 (1128)
|--.. -+....++ .-++..++...-...-++.+.+.++.+++.|.+
T Consensus 158 ~~~c~~c~~~~~~~~~-~~~~~~~~~~~~~~~~~a~l~a~e~i~~l~g~~ 206 (228)
T cd00757 158 EGPCYRCLFPEPPPPG-VPSCAEAGVLGPLVGVIGSLQALEALKILLGIG 206 (228)
T ss_pred CCCCccccCCCCCCCC-CCccccCCcchhHHHHHHHHHHHHHHHHHhCCC
Confidence 10000 00000001 123445666666677788889999999998874
No 330
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=91.70 E-value=0.29 Score=57.74 Aligned_cols=61 Identities=21% Similarity=0.206 Sum_probs=45.9
Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhh--hhcC--Cccc---ChHhhhccCCEEEE
Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG--TALG--AQLV---PLDTLCAESDFIFV 1016 (1128)
Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~--~~~g--~~~~---~l~ell~~sDvV~l 1016 (1128)
.++|||||-|..|+.++..++.+|.+|+++|+....+.. .+.- ..+. .+.++++.+|+|+.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 378999999999999999999999999999987655431 1110 1122 36778889998874
No 331
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=91.67 E-value=3.2 Score=49.89 Aligned_cols=92 Identities=16% Similarity=0.182 Sum_probs=63.1
Q ss_pred cCCCeEEEEEcC---hhhHHHHHHHhhC-CCEEEEEeCCCCch--h----hhhcCCc--c-cChHhhhccCCEEEEecCC
Q psy13054 954 LKGATVGIVGLG---NIGLETAKLLKAF-KVSKILYTSRRVKE--E----GTALGAQ--L-VPLDTLCAESDFIFVTCAL 1020 (1128)
Q Consensus 954 L~gktvGIIG~G---~IG~~vA~~l~af-G~~Vi~~d~~~~~~--~----~~~~g~~--~-~~l~ell~~sDvV~l~lPl 1020 (1128)
+.|++|++||-+ ++.+..+..+..+ ||+|.++.|..-.. . ..+.|.. . .+++|.++.+|||....-.
T Consensus 239 l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~q 318 (429)
T PRK11891 239 VDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRIQ 318 (429)
T ss_pred cCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCch
Confidence 789999999995 8888888888776 99999887654321 1 1222432 2 4899999999999984421
Q ss_pred Ccc----------cccccCHHHHcc-CCCCcEEEEc
Q psy13054 1021 TKD----------TEQLIGRKQFSL-MKPTAILVNT 1045 (1128)
Q Consensus 1021 t~~----------T~~li~~~~l~~-mk~ga~lIN~ 1045 (1128)
.+. -...++++.++. .|++++|.-+
T Consensus 319 ~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHc 354 (429)
T PRK11891 319 KERFADESFEGYTPDFQINQALVDAVCKPDTLIMHP 354 (429)
T ss_pred hhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECC
Confidence 111 113457777777 7777777643
No 332
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=91.66 E-value=0.41 Score=52.74 Aligned_cols=36 Identities=33% Similarity=0.603 Sum_probs=32.1
Q ss_pred CCCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcC
Q psy13054 697 MGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTS 732 (1128)
Q Consensus 697 ~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~ 732 (1128)
.+++|+++.|.|+|++|+.+|+.+..+|+++++...
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D 62 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSD 62 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 347899999999999999999999999999985543
No 333
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=91.54 E-value=0.44 Score=52.19 Aligned_cols=37 Identities=32% Similarity=0.386 Sum_probs=32.7
Q ss_pred CCCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCC
Q psy13054 697 MGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128)
Q Consensus 697 ~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128)
.+++|+|+.|.|+|++|+.+|+.|...|.++++-...
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~ 55 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDP 55 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 3589999999999999999999999999988776543
No 334
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=91.54 E-value=1.8 Score=50.50 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=48.9
Q ss_pred cCCCeEEEEEcC--hhhHHHHHHHhhCCCEEEEEeCCCCchh----------hhhcCCc--c-cChHhhhccCCEEEEe
Q psy13054 954 LKGATVGIVGLG--NIGLETAKLLKAFKVSKILYTSRRVKEE----------GTALGAQ--L-VPLDTLCAESDFIFVT 1017 (1128)
Q Consensus 954 L~gktvGIIG~G--~IG~~vA~~l~afG~~Vi~~d~~~~~~~----------~~~~g~~--~-~~l~ell~~sDvV~l~ 1017 (1128)
+.|++|++||-+ ++.+.++..+..||+++.++.|..-.+. ++..|.+ . .++++.++.+|||..-
T Consensus 154 l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 154 FNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred cCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 678999999986 6899999999999999998876543221 1123432 2 4899999999999974
No 335
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=91.44 E-value=0.51 Score=52.81 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=32.5
Q ss_pred CCCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcC
Q psy13054 697 MGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTS 732 (1128)
Q Consensus 697 ~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~ 732 (1128)
.+++|+|+.|-|+|++|+.+|+.+...|++|++...
T Consensus 34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 458999999999999999999999999999995544
No 336
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.43 E-value=0.36 Score=56.20 Aligned_cols=88 Identities=23% Similarity=0.310 Sum_probs=59.7
Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCC---CCchh-hhhcCCcccC-----hHh--hhccCCEEEEecCCCcc
Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR---RVKEE-GTALGAQLVP-----LDT--LCAESDFIFVTCALTKD 1023 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~---~~~~~-~~~~g~~~~~-----l~e--ll~~sDvV~l~lPlt~~ 1023 (1128)
.|++|.|+|.|.||...++.++..|++|++.+++ ..+.+ +++.|+..+. +.+ .....|+|+-++...+
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~- 250 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPP- 250 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHH-
Confidence 5789999999999999999999999999988763 22222 4556654331 111 1234688887765221
Q ss_pred cccccCHHHHccCCCCcEEEEcCC
Q psy13054 1024 TEQLIGRKQFSLMKPTAILVNTSR 1047 (1128)
Q Consensus 1024 T~~li~~~~l~~mk~ga~lIN~aR 1047 (1128)
.+ .+.++.|+++..++.++.
T Consensus 251 ---~~-~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 251 ---LA-FEALPALAPNGVVILFGV 270 (355)
T ss_pred ---HH-HHHHHHccCCcEEEEEec
Confidence 22 356777888888877664
No 337
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.43 E-value=0.32 Score=55.54 Aligned_cols=68 Identities=13% Similarity=0.195 Sum_probs=47.4
Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCE-EEEEeCCC---Cchh--hhhc---C----CcccC------hHhhhccCCEE
Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVS-KILYTSRR---VKEE--GTAL---G----AQLVP------LDTLCAESDFI 1014 (1128)
Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~-Vi~~d~~~---~~~~--~~~~---g----~~~~~------l~ell~~sDvV 1014 (1128)
+.+|++.|+|.|.+|++++..|...|++ |.+++++. .+.+ ..+. + +...+ +++.+..+|+|
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Dil 203 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDIL 203 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEE
Confidence 5789999999999999999999999996 88888664 2222 1111 1 11112 33455678999
Q ss_pred EEecCCC
Q psy13054 1015 FVTCALT 1021 (1128)
Q Consensus 1015 ~l~lPlt 1021 (1128)
+++.|..
T Consensus 204 INaTp~G 210 (289)
T PRK12548 204 VNATLVG 210 (289)
T ss_pred EEeCCCC
Confidence 9888853
No 338
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=91.40 E-value=0.28 Score=58.95 Aligned_cols=72 Identities=19% Similarity=0.175 Sum_probs=48.8
Q ss_pred CCCCEEEEEecChhhHHHHHHHhhCC-CeEEEEcCCCcccc------Cc---hhhhHHHHHhhc----CCChhhhhhhhH
Q psy13054 699 LKGATVGIVGLGNIGLETAKLLKAFK-VSKILYTSRRVKEE------GQ---LFSLVYDFCRYS----IGGVTIKRLVKK 764 (1128)
Q Consensus 699 l~gktvGIiG~G~IG~~va~r~~afg-~~vi~y~~~~~~~~------~~---~~~~~~~la~~~----pg~~~t~~l~~~ 764 (1128)
+.|++++|||.|.||+.+++.+...| .+++++++...+.. +. .+.-+.+....+ -.++.+..++++
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~~ii~~ 257 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPHPIVSK 257 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCCceEcH
Confidence 67899999999999999999999999 67778876433321 00 011122333333 556666778888
Q ss_pred HHHHHh
Q psy13054 765 TFILSF 770 (1128)
Q Consensus 765 ~~l~~~ 770 (1128)
+.++..
T Consensus 258 e~l~~~ 263 (417)
T TIGR01035 258 EDVERA 263 (417)
T ss_pred HHHHHH
Confidence 887764
No 339
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.38 E-value=0.38 Score=59.00 Aligned_cols=112 Identities=18% Similarity=0.223 Sum_probs=71.4
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh---hhhc--CCccc--C-hHhhhccCCEEEEe--cCCC-
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE---GTAL--GAQLV--P-LDTLCAESDFIFVT--CALT- 1021 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~---~~~~--g~~~~--~-l~ell~~sDvV~l~--lPlt- 1021 (1128)
++.+++|+|+|+|..|..+|+.|+..|.+|.++|.+...+. .... +++.. + ..+.+..+|+|+.. +|.+
T Consensus 4 ~~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~ 83 (498)
T PRK02006 4 DLQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLE 83 (498)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCcc
Confidence 46789999999999999999999999999999997653321 2222 33332 1 34556789999886 3432
Q ss_pred ----cc-------cccccCH-HHHcc-C--------CCCcEEEEcCCCcccCHHHHHHHHhcCC
Q psy13054 1022 ----KD-------TEQLIGR-KQFSL-M--------KPTAILVNTSRGGLLDQEALVEFLKDKK 1064 (1128)
Q Consensus 1022 ----~~-------T~~li~~-~~l~~-m--------k~ga~lIN~aRG~lVde~aL~~aL~~g~ 1064 (1128)
|+ ...+++. +.+.. + ++..+-|-=+-|+.-...-|...|+...
T Consensus 84 ~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g 147 (498)
T PRK02006 84 AALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAG 147 (498)
T ss_pred cccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 11 1123322 22221 2 2245666667888777777777776543
No 340
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=91.36 E-value=0.49 Score=54.87 Aligned_cols=89 Identities=19% Similarity=0.266 Sum_probs=62.7
Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh-hhhcCCccc------ChHhhhc---cCCEEEEecCCCcc
Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE-GTALGAQLV------PLDTLCA---ESDFIFVTCALTKD 1023 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~-~~~~g~~~~------~l~ell~---~sDvV~l~lPlt~~ 1023 (1128)
.|++|.|+|.|.+|...++.+++.|+ +|++.+.+..+.+ +++.|+..+ +++++.. ..|+|+-+... ++
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~-~~ 247 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH-PS 247 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC-HH
Confidence 58899999999999999999999999 5777776555544 556676432 2344332 26888877653 22
Q ss_pred cccccCHHHHccCCCCcEEEEcCCC
Q psy13054 1024 TEQLIGRKQFSLMKPTAILVNTSRG 1048 (1128)
Q Consensus 1024 T~~li~~~~l~~mk~ga~lIN~aRG 1048 (1128)
+ + ...++.++++..+|.++-.
T Consensus 248 ~---~-~~~~~~l~~~G~iv~~G~~ 268 (343)
T PRK09880 248 S---I-NTCLEVTRAKGVMVQVGMG 268 (343)
T ss_pred H---H-HHHHHHhhcCCEEEEEccC
Confidence 1 2 3567788999999988753
No 341
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.36 E-value=0.68 Score=53.66 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=31.0
Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCCC
Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128)
Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128)
++|||||.|.||..+|..+...|++|.+||+..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 689999999999999999999999999999853
No 342
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.35 E-value=0.36 Score=58.58 Aligned_cols=110 Identities=23% Similarity=0.318 Sum_probs=71.2
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccCh-HhhhccCCEEEEec--CCC-c----c
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPL-DTLCAESDFIFVTC--ALT-K----D 1023 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l-~ell~~sDvV~l~l--Plt-~----~ 1023 (1128)
.+.|++|.|||+|.+|..+|+.|+..|.+|.++|....... ....|++.... .+-+..+|+|+..- |.+ | .
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~ 85 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV 85 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence 36789999999999999999999999999999996533222 23345554322 23356799877522 211 1 1
Q ss_pred ---ccc----ccCH-HHHcc-C-----CCCcEEEEcCCCcccCHHHHHHHHhc
Q psy13054 1024 ---TEQ----LIGR-KQFSL-M-----KPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128)
Q Consensus 1024 ---T~~----li~~-~~l~~-m-----k~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128)
++. ++++ +.+.. + +...+-|.=+.|+.-...-|...|+.
T Consensus 86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~ 138 (460)
T PRK01390 86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILRE 138 (460)
T ss_pred HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHh
Confidence 111 1332 22222 2 34566777789998888888888875
No 343
>KOG1370|consensus
Probab=91.18 E-value=0.28 Score=55.11 Aligned_cols=50 Identities=24% Similarity=0.320 Sum_probs=44.2
Q ss_pred ccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCC
Q psy13054 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGG 359 (1128)
Q Consensus 306 ~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~ 359 (1128)
-.|++.++++|..++.||++- |...+.+|..+.|.+||.++|+-|++.-.
T Consensus 255 MeG~~V~tm~ea~~e~difVT----tTGc~dii~~~H~~~mk~d~IvCN~Ghfd 304 (434)
T KOG1370|consen 255 MEGYEVTTLEEAIREVDIFVT----TTGCKDIITGEHFDQMKNDAIVCNIGHFD 304 (434)
T ss_pred hhccEeeeHHHhhhcCCEEEE----ccCCcchhhHHHHHhCcCCcEEecccccc
Confidence 347888999999999999987 45789999999999999999999998643
No 344
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.17 E-value=1.8 Score=50.14 Aligned_cols=93 Identities=17% Similarity=0.119 Sum_probs=69.7
Q ss_pred hhHHHHHHHhhCCCEEEEEeCCCCch-------h-h-----------hhcC-------------Cccc-C--hHhhhccC
Q psy13054 967 IGLETAKLLKAFKVSKILYTSRRVKE-------E-G-----------TALG-------------AQLV-P--LDTLCAES 1011 (1128)
Q Consensus 967 IG~~vA~~l~afG~~Vi~~d~~~~~~-------~-~-----------~~~g-------------~~~~-~--l~ell~~s 1011 (1128)
||..+|..+...|++|++||...... + . .+.| ++.+ + ..+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 68899999999999999999877420 0 0 0111 1222 2 45788999
Q ss_pred CEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHh
Q psy13054 1012 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLK 1061 (1128)
Q Consensus 1012 DvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~ 1061 (1128)
|+|+-++|.+.+.+.-+=++..+.++++++| ++.-+.+....|.+.++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~ 128 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVA 128 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcC
Confidence 9999999999999887777788889999999 45555567778888774
No 345
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.10 E-value=0.37 Score=55.68 Aligned_cols=93 Identities=17% Similarity=0.244 Sum_probs=60.5
Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchh--hhhc--------CCcc-cChHhhhccCCEEEEecCCC
Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEE--GTAL--------GAQL-VPLDTLCAESDFIFVTCALT 1021 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~--~~~~--------g~~~-~~l~ell~~sDvV~l~lPlt 1021 (1128)
.+++|+|||.|.+|..+|-.+...|. +++.+|...+... ..+. .... .+-.+.++.||+|++..-..
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~~ 84 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGAP 84 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCCC
Confidence 56899999999999999999988887 7899997665443 1111 1111 12335689999999976532
Q ss_pred c---ccc--------cccC--HHHHccCCCCcEEEEcCC
Q psy13054 1022 K---DTE--------QLIG--RKQFSLMKPTAILVNTSR 1047 (1128)
Q Consensus 1022 ~---~T~--------~li~--~~~l~~mk~ga~lIN~aR 1047 (1128)
. +|| .++. .+.+..-.+.+.+|+++-
T Consensus 85 ~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN 123 (315)
T PRK00066 85 QKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN 123 (315)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 1 122 1111 123333457899999984
No 346
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=91.06 E-value=0.4 Score=57.75 Aligned_cols=122 Identities=20% Similarity=0.308 Sum_probs=78.9
Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--h---hhcCCccc---ChHhhhccCCEEEEecCCCcccc
Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--G---TALGAQLV---PLDTLCAESDFIFVTCALTKDTE 1025 (1128)
Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~---~~~g~~~~---~l~ell~~sDvV~l~lPlt~~T~ 1025 (1128)
..+++|.|+|+|.-|+++|+.|+..|++|.++|.+..... . ...++... ...+.+.++|+|+.. |.-+-+.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~S-PGi~~~~ 83 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKS-PGIPPTH 83 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEEC-CCCCCCC
Confidence 3499999999999999999999999999999997766521 1 12343332 122678889999974 4444433
Q ss_pred cccC-----------H-HHHccC--CCCcEEEEcCCCcccCHHHHHHHHhc--------CCceEEEEeccCCC
Q psy13054 1026 QLIG-----------R-KQFSLM--KPTAILVNTSRGGLLDQEALVEFLKD--------KKIGGAGLDVMIPE 1076 (1128)
Q Consensus 1026 ~li~-----------~-~~l~~m--k~ga~lIN~aRG~lVde~aL~~aL~~--------g~i~gaaLDV~e~E 1076 (1128)
-++. . +.|.+. +.-.+-|.=+-|+.=.+.-+...|++ |.|...++|+.+++
T Consensus 84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~ 156 (448)
T COG0771 84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQA 156 (448)
T ss_pred HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhccc
Confidence 3332 2 223332 22255555567776555555555543 46777888988763
No 347
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.06 E-value=0.47 Score=56.89 Aligned_cols=106 Identities=15% Similarity=0.149 Sum_probs=63.6
Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhh-cCCcc-cChHhhhccCCEEEEecCCCccccc-------
Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTA-LGAQL-VPLDTLCAESDFIFVTCALTKDTEQ------- 1026 (1128)
Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~-~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~------- 1026 (1128)
.++|.|||+|.+|..+|+.|+..|.+|.++|++........ ..-.. ...+.+..++|+|+.+.+.. ....
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~-~~~~~l~~A~~ 81 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIK-KEHPWVQAAIA 81 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCC-CCcHHHHHHHH
Confidence 46899999999999999999999999999997654321100 00011 12334457789888766543 3222
Q ss_pred ----ccCHHHH--cc--C-CCCcEEEEcCCCcccCHHHHHHHHhc
Q psy13054 1027 ----LIGRKQF--SL--M-KPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128)
Q Consensus 1027 ----li~~~~l--~~--m-k~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128)
+++...+ .. + +...+=|-=+.|+.-...=|...|+.
T Consensus 82 ~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~ 126 (418)
T PRK00683 82 SHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR 126 (418)
T ss_pred CCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH
Confidence 2222122 11 1 22245555567776666666666754
No 348
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.99 E-value=0.47 Score=57.20 Aligned_cols=110 Identities=26% Similarity=0.350 Sum_probs=71.3
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh------hhhcCCccc---ChHhhhccCCEEEEecCCCcc
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE------GTALGAQLV---PLDTLCAESDFIFVTCALTKD 1023 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~------~~~~g~~~~---~l~ell~~sDvV~l~lPlt~~ 1023 (1128)
.+.+|++.|+|.|.+|.++|+.|...|++|.++|+...... ....+.+.. ..++.....|+|++..-..+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence 36789999999999999999999999999999987642211 112244332 244667789999986543333
Q ss_pred cccc----------cCH-HHHc-cCCCCcEEEEcCCCcccCHHHHHHHHhc
Q psy13054 1024 TEQL----------IGR-KQFS-LMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128)
Q Consensus 1024 T~~l----------i~~-~~l~-~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128)
..-+ +.. +.+. ..+...+-|-=+.|+.-...-|...|+.
T Consensus 82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 2211 111 1122 2233455555588888877877777865
No 349
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.96 E-value=0.26 Score=56.65 Aligned_cols=57 Identities=16% Similarity=0.129 Sum_probs=42.8
Q ss_pred CCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCccccCchhhhHHHHHhhc-------CCChhhhhhhhH
Q psy13054 700 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGQLFSLVYDFCRYS-------IGGVTIKRLVKK 764 (1128)
Q Consensus 700 ~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~~~~~~~~~~~~~la~~~-------pg~~~t~~l~~~ 764 (1128)
.+++|||||+|++|+++|+++...|.+|.+|+++... .+.+.++.+ |. ...+.+++.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~-------~~~~~~~~advvi~~vp~-~~~~~v~~~ 66 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGL-------SLAAVLADADVIVSAVSM-KGVRPVAEQ 66 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCC-------CHHHHHhcCCEEEEECCh-HHHHHHHHH
Confidence 4578999999999999999999999999999875431 134444444 65 467776644
No 350
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=90.95 E-value=0.38 Score=57.08 Aligned_cols=99 Identities=17% Similarity=0.146 Sum_probs=65.6
Q ss_pred cCCCeEEEEEc-ChhhHHHHHHHhhC-CCEEEEEeCCCCchh-hhhcC-------Cc-ccChHh-hhccCCEEEEecCCC
Q psy13054 954 LKGATVGIVGL-GNIGLETAKLLKAF-KVSKILYTSRRVKEE-GTALG-------AQ-LVPLDT-LCAESDFIFVTCALT 1021 (1128)
Q Consensus 954 L~gktvGIIG~-G~IG~~vA~~l~af-G~~Vi~~d~~~~~~~-~~~~g-------~~-~~~l~e-ll~~sDvV~l~lPlt 1021 (1128)
...++|+|+|. |.+|+++.++|..- ++++..+.++..... ..... .. ..++++ .++++|+|++++|..
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG 115 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence 35568999999 99999999999877 778777765432211 11111 11 122332 258899999999953
Q ss_pred cccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHH
Q psy13054 1022 KDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVE 1058 (1128)
Q Consensus 1022 ~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~ 1058 (1128)
...+....|+.|..+|+.|-.--.+.++.++
T Consensus 116 ------~s~~i~~~~~~g~~VIDlSs~fRl~~~~~y~ 146 (381)
T PLN02968 116 ------TTQEIIKALPKDLKIVDLSADFRLRDIAEYE 146 (381)
T ss_pred ------HHHHHHHHHhCCCEEEEcCchhccCCcccch
Confidence 3445555566789999998777666665443
No 351
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=90.92 E-value=3.7 Score=46.59 Aligned_cols=160 Identities=15% Similarity=0.138 Sum_probs=103.9
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhC----CC-------EEEEEeCCC-------Cchh----hhhcCC--cccChHhhh
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAF----KV-------SKILYTSRR-------VKEE----GTALGA--QLVPLDTLC 1008 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~af----G~-------~Vi~~d~~~-------~~~~----~~~~g~--~~~~l~ell 1008 (1128)
.|...++.|+|.|.-|-.+|+.+... |+ +++.+|+.. +-.. .....- ...+|.|++
T Consensus 22 ~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i 101 (279)
T cd05312 22 PLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVV 101 (279)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHH
Confidence 46788999999999999999999877 77 777777652 1111 111111 234899999
Q ss_pred c--cCCEEEEecCCCcccccccCHHHHccCC---CCcEEEEcCCCcc---cCHHHHHHHHhcCCceEEEEeccCCCCCCC
Q psy13054 1009 A--ESDFIFVTCALTKDTEQLIGRKQFSLMK---PTAILVNTSRGGL---LDQEALVEFLKDKKIGGAGLDVMIPEPLPA 1080 (1128)
Q Consensus 1009 ~--~sDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aRG~l---Vde~aL~~aL~~g~i~gaaLDV~e~EPl~~ 1080 (1128)
+ ..|+++=+ ...-|+|+++.++.|. +..++.=.|+... +..++.+++=+...|.+.| -|+++
T Consensus 102 ~~v~ptvlIG~----S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATG------sPf~p 171 (279)
T cd05312 102 KAVKPTVLIGL----SGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASG------SPFPP 171 (279)
T ss_pred HhcCCCEEEEe----CCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeC------CCCCC
Confidence 9 88999842 2223799999999998 8999999998876 2344444432233355543 23221
Q ss_pred ------CCccccCCCeEECCCCCCC-----cHHHHHHHHHHHHHHHHHHHcCC
Q psy13054 1081 ------DHPLVQLDNCVLTPHTSSA-----TKAVRDEKSSTSAENIIRGYKGE 1122 (1128)
Q Consensus 1081 ------~~pL~~~pNvilTPHiag~-----t~e~~~~~~~~~~~nl~~~l~G~ 1122 (1128)
...-=+.-|+++=|=++-. .....++|...+++.|..+..-+
T Consensus 172 v~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~ 224 (279)
T cd05312 172 VEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDE 224 (279)
T ss_pred eeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCcc
Confidence 1122246688988876532 22334667777777777765433
No 352
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=90.90 E-value=0.31 Score=59.52 Aligned_cols=75 Identities=13% Similarity=0.111 Sum_probs=64.8
Q ss_pred cCHHHHhhc---CCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCC
Q psy13054 312 VPLDTLCAE---SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEP 387 (1128)
Q Consensus 312 vsLdeLl~~---SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EP 387 (1128)
.+++|+.+. +|+|++.+|-.+.++.++ ...+..+++|.++|+.+-..--|...+.+.+++..+...+.=|.-.|+
T Consensus 61 ~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~ 138 (493)
T PLN02350 61 KDPEDFVLSIQKPRSVIILVKAGAPVDQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE 138 (493)
T ss_pred CCHHHHHhcCCCCCEEEEECCCcHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence 488998876 999999999999998888 567889999999999999998999999999999888766666666655
No 353
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.85 E-value=0.27 Score=57.42 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=33.6
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCC
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRR 989 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~ 989 (1128)
.|..++|.|||+|.+|..+|+.|...|. ++.++|...
T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 6899999999999999999999999998 888888753
No 354
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=90.82 E-value=0.12 Score=58.31 Aligned_cols=102 Identities=17% Similarity=0.102 Sum_probs=61.7
Q ss_pred eeCCCCCCCCccccccC--Cccccceeeccccccc-ccccccCC--cccCHHHHhhcCCEEEEecCCCcccccccCHHHH
Q psy13054 269 FLGPKKNGSQNPKWRMG--SKTDTNHYFGYNWFER-SNGTALGA--QLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQF 343 (1128)
Q Consensus 269 ilG~g~iG~~va~~~~g--~~~~~~~~~g~~~~~~-~~~~~~g~--~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l 343 (1128)
++|+|+||+.+++.... .......+...+.... .....++. .+.++++|++++|+|++++|. +++.-+. .
T Consensus 11 IIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~--~~h~e~~---~ 85 (271)
T PRK13302 11 IAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPA--SVLRAIV---E 85 (271)
T ss_pred EECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCc--HHHHHHH---H
Confidence 67888888776653211 1111111212221111 11233443 345899999999999999994 3333333 3
Q ss_pred hcCCCCcEEEEecCCCccCHHHHHHHHHcCCe
Q psy13054 344 SLMKPTAILINTSRGGLLDQEALVEFLKDKKI 375 (1128)
Q Consensus 344 ~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~I 375 (1128)
+.++.|.-++..++|.+.+.++|.++.+++..
T Consensus 86 ~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~ 117 (271)
T PRK13302 86 PVLAAGKKAIVLSVGALLRNEDLIDLARQNGG 117 (271)
T ss_pred HHHHcCCcEEEecchhHHhHHHHHHHHHHcCC
Confidence 44566767778899999999999999888554
No 355
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.77 E-value=1.2 Score=53.61 Aligned_cols=110 Identities=20% Similarity=0.224 Sum_probs=71.3
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-----hhhcCCccc---ChHhhhcc-CCEEEEec--CCC
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-----GTALGAQLV---PLDTLCAE-SDFIFVTC--ALT 1021 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-----~~~~g~~~~---~l~ell~~-sDvV~l~l--Plt 1021 (1128)
++.||++.|+|.|.+|.++|+.|...|++|++.|....... ..+.|+... ...+++.. .|+|+..- |.+
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~ 81 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYT 81 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCC
Confidence 36789999999999999999999999999999986543211 223355432 23344554 89887654 211
Q ss_pred -cc-------cccccCHHHH-ccC-CCCcEEEEcCCCcccCHHHHHHHHhc
Q psy13054 1022 -KD-------TEQLIGRKQF-SLM-KPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128)
Q Consensus 1022 -~~-------T~~li~~~~l-~~m-k~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128)
|. ...++.+..| ..+ +...+-|-=+.|+.-...-+...|+.
T Consensus 82 ~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~ 132 (447)
T PRK02472 82 NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKA 132 (447)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 11 1123444333 233 34466666688988877777777865
No 356
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=90.74 E-value=0.87 Score=55.55 Aligned_cols=101 Identities=17% Similarity=0.241 Sum_probs=70.7
Q ss_pred ccCCCeEEEEEc----------ChhhHHHHHHHhhCCCEEEEEeCCCCchhhh-hc----------------------CC
Q psy13054 953 GLKGATVGIVGL----------GNIGLETAKLLKAFKVSKILYTSRRVKEEGT-AL----------------------GA 999 (1128)
Q Consensus 953 ~L~gktvGIIG~----------G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~-~~----------------------g~ 999 (1128)
.+.|++|+|+|+ ..-...+++.|...|.+|.+|||........ .. .+
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 478999999998 4467899999999999999999986543221 11 11
Q ss_pred ccc-ChHhhhccCCEEEEecCCCcccccccCHHH-HccCCCCcEEEEcCCCcccCHHHHH
Q psy13054 1000 QLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQ-FSLMKPTAILVNTSRGGLLDQEALV 1057 (1128)
Q Consensus 1000 ~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~~~-l~~mk~ga~lIN~aRG~lVde~aL~ 1057 (1128)
++. ++++.++.||+|+++.+..+ .+. ++-+. .+.|++..++|+. |+- .|.+.+-
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~~e-f~~-l~~~~~~~~m~~~~~viD~-rn~-l~~~~~~ 456 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEWDE-FKT-LDYQKIYDNMQKPAFVFDG-RNV-LDHEKLR 456 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCChH-hcc-cCHHHHHHhccCCCEEEEC-CCC-CCHHHHH
Confidence 222 56789999999999988543 333 35444 4568766688884 554 4665553
No 357
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=90.58 E-value=0.39 Score=52.32 Aligned_cols=89 Identities=18% Similarity=0.201 Sum_probs=65.0
Q ss_pred ccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh---hhhcCCcc----cChHhhhccCCEEEEecCCCcc
Q psy13054 951 IMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE---GTALGAQL----VPLDTLCAESDFIFVTCALTKD 1023 (1128)
Q Consensus 951 ~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~---~~~~g~~~----~~l~ell~~sDvV~l~lPlt~~ 1023 (1128)
+..+.||+|.|||-|.+|..=++.+...|++|+++.+...... ..+..... .+.+++. .+++|+.+++..+
T Consensus 7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~-~~~lviaAt~d~~- 84 (210)
T COG1648 7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLD-DAFLVIAATDDEE- 84 (210)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhhc-CceEEEEeCCCHH-
Confidence 3479999999999999999999999999999999988772221 12222222 2333443 4899998887443
Q ss_pred cccccCHHHHccCCCCcEEEEc
Q psy13054 1024 TEQLIGRKQFSLMKPTAILVNT 1045 (1128)
Q Consensus 1024 T~~li~~~~l~~mk~ga~lIN~ 1045 (1128)
+|+..++.+++-.++||+
T Consensus 85 ----ln~~i~~~a~~~~i~vNv 102 (210)
T COG1648 85 ----LNERIAKAARERRILVNV 102 (210)
T ss_pred ----HHHHHHHHHHHhCCceec
Confidence 466777777777788888
No 358
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.57 E-value=0.41 Score=55.14 Aligned_cols=89 Identities=26% Similarity=0.315 Sum_probs=58.0
Q ss_pred eEEEEEcChhhHHHHHHHhhCC--CEEEEEeCCCCchh--hhhc--CCc-------ccChHhhhccCCEEEEecCCCcc-
Q psy13054 958 TVGIVGLGNIGLETAKLLKAFK--VSKILYTSRRVKEE--GTAL--GAQ-------LVPLDTLCAESDFIFVTCALTKD- 1023 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG--~~Vi~~d~~~~~~~--~~~~--g~~-------~~~l~ell~~sDvV~l~lPlt~~- 1023 (1128)
+|+|||.|.+|..+|..|...| -+++++|....+.. +.+. ... ..+-.+.++.||+|+++.+....
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~~~~ 81 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGANQKP 81 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCCCCC
Confidence 6999999999999999998888 58999997765433 1111 100 01223568999999999985322
Q ss_pred --cc--------cccC--HHHHccCCCCcEEEEcC
Q psy13054 1024 --TE--------QLIG--RKQFSLMKPTAILVNTS 1046 (1128)
Q Consensus 1024 --T~--------~li~--~~~l~~mk~ga~lIN~a 1046 (1128)
++ .++. .+.+....+.+++++++
T Consensus 82 ~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 82 GETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 11 1111 12344456788888885
No 359
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=90.53 E-value=0.28 Score=55.91 Aligned_cols=34 Identities=32% Similarity=0.428 Sum_probs=31.2
Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCc
Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV 735 (1128)
Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~ 735 (1128)
++|||||+|.+|..+|+.+...|.+|++||+...
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 6899999999999999999999999999998543
No 360
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=90.52 E-value=0.32 Score=60.60 Aligned_cols=86 Identities=13% Similarity=0.211 Sum_probs=60.4
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-----C---hHh-hhccCCEEEEecCCCccccc
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-----P---LDT-LCAESDFIFVTCALTKDTEQ 1026 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-----~---l~e-ll~~sDvV~l~lPlt~~T~~ 1026 (1128)
..+-|+|+|++|+.+|+.|+..|.+|++.|.+.++.+ .++.|.... + +++ -++++|.++++.+..+++..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 4688999999999999999999999999998776654 444554331 2 222 25689999999998777665
Q ss_pred ccCHHHHccCCCCcEEEE
Q psy13054 1027 LIGRKQFSLMKPTAILVN 1044 (1128)
Q Consensus 1027 li~~~~l~~mk~ga~lIN 1044 (1128)
++-. ..++.+...+|-
T Consensus 498 iv~~--~~~~~~~~~iia 513 (558)
T PRK10669 498 IVAS--AREKRPDIEIIA 513 (558)
T ss_pred HHHH--HHHHCCCCeEEE
Confidence 5532 233345555553
No 361
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=90.51 E-value=0.54 Score=57.06 Aligned_cols=111 Identities=17% Similarity=0.228 Sum_probs=73.1
Q ss_pred cCCCeEEEEEcChhhHH-HHHHHhhCCCEEEEEeCCCCchh--hhhcCCccc--ChHhhhccCCEEEEecCC---Cccc-
Q psy13054 954 LKGATVGIVGLGNIGLE-TAKLLKAFKVSKILYTSRRVKEE--GTALGAQLV--PLDTLCAESDFIFVTCAL---TKDT- 1024 (1128)
Q Consensus 954 L~gktvGIIG~G~IG~~-vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~--~l~ell~~sDvV~l~lPl---t~~T- 1024 (1128)
.+++++.|+|+|..|.. +|+.|+..|.+|.++|.+..... ..+.|+... .-.+.+..+|+|++.--- +|..
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence 46789999999999999 79999999999999997654321 233455442 223456689988764322 1221
Q ss_pred ------ccccCHHHH-ccC-C-CCcEEEEcCCCcccCHHHHHHHHhcCC
Q psy13054 1025 ------EQLIGRKQF-SLM-K-PTAILVNTSRGGLLDQEALVEFLKDKK 1064 (1128)
Q Consensus 1025 ------~~li~~~~l-~~m-k-~ga~lIN~aRG~lVde~aL~~aL~~g~ 1064 (1128)
..+++.-.| ..+ + ...+-|-=+.|+.-...-+...|+...
T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 124554433 333 3 346667778899887777777786543
No 362
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.48 E-value=0.78 Score=52.98 Aligned_cols=113 Identities=19% Similarity=0.254 Sum_probs=70.0
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchh--hhh----c---C---Ccc-cChHhhhccCCEEEEecCCC
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEE--GTA----L---G---AQL-VPLDTLCAESDFIFVTCALT 1021 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~--~~~----~---g---~~~-~~l~ell~~sDvV~l~lPlt 1021 (1128)
.+|+|||.|.||..+|-.+...|. +++.||.+.+... +.+ . . +.. .+.+ .++.||+|+++.-..
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvitaG~~ 82 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVTAGAR 82 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEECCCCC
Confidence 589999999999999998865554 7889997765443 111 0 1 111 2344 489999999965432
Q ss_pred c---ccc-ccc--CH-------HHHccCCCCcEEEEcCCCcccCHHHHHHH--HhcCCceEEEE
Q psy13054 1022 K---DTE-QLI--GR-------KQFSLMKPTAILVNTSRGGLLDQEALVEF--LKDKKIGGAGL 1070 (1128)
Q Consensus 1022 ~---~T~-~li--~~-------~~l~~mk~ga~lIN~aRG~lVde~aL~~a--L~~g~i~gaaL 1070 (1128)
. +|| .++ |. +.+....|.+++|+++-..=+-...+.+. +...++.|.+.
T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~gt 146 (312)
T cd05293 83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGSGC 146 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEecCc
Confidence 1 233 111 11 33455678999999984443334444444 55557666643
No 363
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.47 E-value=0.29 Score=58.97 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=50.0
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhh-cCCcc--------cChHhh-hccCCEEEEecCCCcc
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTA-LGAQL--------VPLDTL-CAESDFIFVTCALTKD 1023 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~-~g~~~--------~~l~el-l~~sDvV~l~lPlt~~ 1023 (1128)
+++.|+|+|.+|+.+++.|...|.+|++++....... ..+ .++.. ..++++ +.++|.|+++++....
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~ 78 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET 78 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence 3689999999999999999999999999987655443 222 33221 235555 7889999999986544
No 364
>KOG0409|consensus
Probab=90.43 E-value=0.27 Score=55.51 Aligned_cols=93 Identities=13% Similarity=0.150 Sum_probs=65.8
Q ss_pred CCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCccc------cCchhhhHHHHHhhc-------CCChhhhhhhhH--
Q psy13054 700 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE------EGQLFSLVYDFCRYS-------IGGVTIKRLVKK-- 764 (1128)
Q Consensus 700 ~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~~~------~~~~~~~~~~la~~~-------pg~~~t~~l~~~-- 764 (1128)
.-+++|.||+|+.|..++.-|-.-|.+|++||....+- -...+..+.|+++.| |--...++++..
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~ 113 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKS 113 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCC
Confidence 46899999999999999999999999999999766554 223334488889888 777777777633
Q ss_pred HHHHHhcceEEeeeeecccCCCcchhcccc
Q psy13054 765 TFILSFGGLVVTVLHVHIGDLPAESFEDQV 794 (1128)
Q Consensus 765 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1128)
-+|+.++--=+.. +-|.+++|..-.++.
T Consensus 114 Gvl~g~~~g~~~~--vDmSTidp~~s~ei~ 141 (327)
T KOG0409|consen 114 GVLSGIRPGKKAT--VDMSTIDPDTSLEIA 141 (327)
T ss_pred cceeeccCCCceE--EeccccCHHHHHHHH
Confidence 3444433211111 567777777766543
No 365
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.41 E-value=0.44 Score=58.11 Aligned_cols=111 Identities=12% Similarity=0.125 Sum_probs=72.1
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcCCccc---ChHhhhccCCEEEEec--C-CCccc
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALGAQLV---PLDTLCAESDFIFVTC--A-LTKDT 1024 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~---~l~ell~~sDvV~l~l--P-lt~~T 1024 (1128)
.+.+++|.|+|+|.+|+++|+.|...|++|.++|+...... ....|+... ...+.+..+|+|+..- | ..|+.
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~ 91 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL 91 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence 67899999999999999999999999999999996543322 233466543 2234567889887642 2 22221
Q ss_pred -------ccccCHHHHcc-------C--CCCcEEEEcCCCcccCHHHHHHHHhcC
Q psy13054 1025 -------EQLIGRKQFSL-------M--KPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128)
Q Consensus 1025 -------~~li~~~~l~~-------m--k~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128)
..++++-.+.. + +...+-|-=+-|+.-...-|...|+..
T Consensus 92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~ 146 (473)
T PRK00141 92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEG 146 (473)
T ss_pred HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 12233333321 1 123555666888888777777778753
No 366
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.41 E-value=0.46 Score=53.99 Aligned_cols=71 Identities=20% Similarity=0.283 Sum_probs=53.8
Q ss_pred CCCCCCEEEEEecChh-hHHHHHHHhhCCCeEEEEcCCCccccCchhhhHHHHHhhc---CCChhhhhhhhHHHHHHhcc
Q psy13054 697 MGLKGATVGIVGLGNI-GLETAKLLKAFKVSKILYTSRRVKEEGQLFSLVYDFCRYS---IGGVTIKRLVKKTFILSFGG 772 (1128)
Q Consensus 697 ~~l~gktvGIiG~G~I-G~~va~r~~afg~~vi~y~~~~~~~~~~~~~~~~~la~~~---pg~~~t~~l~~~~~l~~~~~ 772 (1128)
.+++||++.|||-|+| |+-+|..|...|++|..+|++.+. +.+..+++ -....+.++++++.++.- +
T Consensus 154 i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~--------l~~~~~~ADIVV~avG~~~~i~~~~ik~g-a 224 (285)
T PRK14189 154 IPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRD--------LAAHTRQADIVVAAVGKRNVLTADMVKPG-A 224 (285)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCC--------HHHHhhhCCEEEEcCCCcCccCHHHcCCC-C
Confidence 4689999999999999 999999999999999999975321 34455555 222226678999888765 4
Q ss_pred eEEe
Q psy13054 773 LVVT 776 (1128)
Q Consensus 773 ~~~~ 776 (1128)
.||.
T Consensus 225 vVID 228 (285)
T PRK14189 225 TVID 228 (285)
T ss_pred EEEE
Confidence 5666
No 367
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=90.25 E-value=0.42 Score=60.09 Aligned_cols=91 Identities=22% Similarity=0.296 Sum_probs=65.0
Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-----C---hHh-hhccCCEEEEecCCCcccc
Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-----P---LDT-LCAESDFIFVTCALTKDTE 1025 (1128)
Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-----~---l~e-ll~~sDvV~l~lPlt~~T~ 1025 (1128)
...+-|+|+|++|+.+++.|+..|.++++.|.++++.+ .++.|.... + |++ =+.++|.++++.+..+++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 35699999999999999999999999999998776554 444554321 2 222 2678999999999877766
Q ss_pred cccCHHHHccCCCCcEEEEcCCC
Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSRG 1048 (1128)
Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aRG 1048 (1128)
.++. ...++.|...+|-.+|.
T Consensus 480 ~i~~--~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 480 KIVE--LCQQHFPHLHILARARG 500 (601)
T ss_pred HHHH--HHHHHCCCCeEEEEeCC
Confidence 5542 34556666666654443
No 368
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=90.22 E-value=0.51 Score=43.72 Aligned_cols=35 Identities=37% Similarity=0.490 Sum_probs=30.8
Q ss_pred CCCCCEEEEEecChhhHHHHHHHhhC-CCeEEEEcC
Q psy13054 698 GLKGATVGIVGLGNIGLETAKLLKAF-KVSKILYTS 732 (1128)
Q Consensus 698 ~l~gktvGIiG~G~IG~~va~r~~af-g~~vi~y~~ 732 (1128)
.+++|+++|+|.|.+|+.+++.+... +.++..|++
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 47889999999999999999999998 567777766
No 369
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=90.02 E-value=0.47 Score=54.73 Aligned_cols=65 Identities=22% Similarity=0.373 Sum_probs=47.3
Q ss_pred CeEEEEEcChhhH-HHHHHHhhCC--CEEE-EEeCCCCchh--hhhcCCc--ccChHhhhccC--CEEEEecCCC
Q psy13054 957 ATVGIVGLGNIGL-ETAKLLKAFK--VSKI-LYTSRRVKEE--GTALGAQ--LVPLDTLCAES--DFIFVTCALT 1021 (1128)
Q Consensus 957 ktvGIIG~G~IG~-~vA~~l~afG--~~Vi-~~d~~~~~~~--~~~~g~~--~~~l~ell~~s--DvV~l~lPlt 1021 (1128)
.++||||+|.|++ ..+..++..+ +.++ ++|+...+.. +.+.++. +.+++++++.- |+|+++.|..
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~ 78 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNA 78 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCCh
Confidence 5799999997775 5888888876 3444 4465555543 5566764 56899999874 8999999944
No 370
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=89.93 E-value=0.51 Score=53.93 Aligned_cols=85 Identities=19% Similarity=0.313 Sum_probs=54.7
Q ss_pred eEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCc-------------h--------h-h----hhc--CCcc-------
Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVK-------------E--------E-G----TAL--GAQL------- 1001 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~-------------~--------~-~----~~~--g~~~------- 1001 (1128)
+|.|||.|.+|..+|+.|...|. ++.++|...-. . + + .+. +++.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 58999999999999999999988 44455432110 0 0 0 000 1100
Q ss_pred -------------------cChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcC
Q psy13054 1002 -------------------VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTS 1046 (1128)
Q Consensus 1002 -------------------~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 1046 (1128)
..++++++++|+|+.++ .+-++|.+++.--... +..+||.+
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~t-Dn~esR~L~~~~~~~~---~k~~I~aa 140 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLT-DSRESRWLPTLLSAAK---NKLVINAA 140 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECC-CCHHHHHHHHHHHHHh---CCcEEEEE
Confidence 02568999999999988 5888888887544332 33666643
No 371
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=89.91 E-value=0.43 Score=57.45 Aligned_cols=104 Identities=16% Similarity=0.135 Sum_probs=66.8
Q ss_pred eEEEEEcChhhHHHHH---HH---hhCCCEEEEEeCCCCchhh---------hhcC----Cc-ccChHhhhccCCEEEEe
Q psy13054 958 TVGIVGLGNIGLETAK---LL---KAFKVSKILYTSRRVKEEG---------TALG----AQ-LVPLDTLCAESDFIFVT 1017 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~---~l---~afG~~Vi~~d~~~~~~~~---------~~~g----~~-~~~l~ell~~sDvV~l~ 1017 (1128)
+|+|||.|.+|...+- .+ ..-|.+|+.||......+. ...+ +. ..++.+.++.||+|+.+
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~a 81 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVINT 81 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEEe
Confidence 6999999999998554 33 3346799999977654331 0111 11 13678999999999999
Q ss_pred cCCCc-----------ccccccC---------------------HHHHccCC---CCcEEEEcCCCcccCHHHHHHHHh
Q psy13054 1018 CALTK-----------DTEQLIG---------------------RKQFSLMK---PTAILVNTSRGGLLDQEALVEFLK 1061 (1128)
Q Consensus 1018 lPlt~-----------~T~~li~---------------------~~~l~~mk---~ga~lIN~aRG~lVde~aL~~aL~ 1061 (1128)
+|... .-++++. .+..+.|+ |.++++|.+-..-+-+.++.+...
T Consensus 82 i~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~~k~~~ 160 (423)
T cd05297 82 IQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNRYTP 160 (423)
T ss_pred eEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHHHHhCC
Confidence 99310 1111111 12333333 689999998887777777776654
No 372
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=89.87 E-value=0.62 Score=53.18 Aligned_cols=68 Identities=16% Similarity=0.180 Sum_probs=47.4
Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCC---chh--hhhcC------CcccCh------HhhhccCCEEE
Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRV---KEE--GTALG------AQLVPL------DTLCAESDFIF 1015 (1128)
Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~---~~~--~~~~g------~~~~~l------~ell~~sDvV~ 1015 (1128)
+.||++.|+|.|..+++++-.|...|+ ++.++++... +.+ +...+ +...++ .+.+.++|+|+
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivI 201 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILT 201 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEE
Confidence 678999999999999999999988887 7888887643 222 11111 122233 23456789999
Q ss_pred EecCCC
Q psy13054 1016 VTCALT 1021 (1128)
Q Consensus 1016 l~lPlt 1021 (1128)
++.|..
T Consensus 202 NaTp~G 207 (288)
T PRK12749 202 NGTKVG 207 (288)
T ss_pred ECCCCC
Confidence 998863
No 373
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=89.87 E-value=0.64 Score=53.34 Aligned_cols=109 Identities=18% Similarity=0.202 Sum_probs=66.4
Q ss_pred EEEEEcChhhHHHHHHHhhCC--CEEEEEeCCCCchhhh--h---c----C-Ccc--cChHhhhccCCEEEEecCCCccc
Q psy13054 959 VGIVGLGNIGLETAKLLKAFK--VSKILYTSRRVKEEGT--A---L----G-AQL--VPLDTLCAESDFIFVTCALTKDT 1024 (1128)
Q Consensus 959 vGIIG~G~IG~~vA~~l~afG--~~Vi~~d~~~~~~~~~--~---~----g-~~~--~~l~ell~~sDvV~l~lPlt~~T 1024 (1128)
|+|||.|.+|..+|-.+...| .+++++|...++.... + . . .+. .+-.+.++.||+|+++... |..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~-p~~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGA-PRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCC-CCC
Confidence 589999999999999998777 5799999877654311 1 1 0 011 1114688999999998874 222
Q ss_pred ccc------------cC--HHHHccCCCCcEEEEcCCCcccCHHHHHHH--HhcCCceEE
Q psy13054 1025 EQL------------IG--RKQFSLMKPTAILVNTSRGGLLDQEALVEF--LKDKKIGGA 1068 (1128)
Q Consensus 1025 ~~l------------i~--~~~l~~mk~ga~lIN~aRG~lVde~aL~~a--L~~g~i~ga 1068 (1128)
.++ +. .+.+....|.+++||.+-..=+-...+.+. +...++.|.
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~~~~sg~~~~kviG~ 139 (300)
T cd00300 80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVAQKLSGLPKNRVIGS 139 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHHHHHHhCcCHHHEEec
Confidence 221 10 123455568999999984332233333333 333455554
No 374
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=89.85 E-value=0.61 Score=54.60 Aligned_cols=91 Identities=26% Similarity=0.299 Sum_probs=56.9
Q ss_pred CeEEEEEc-ChhhHHHHHHHhhC-CCEEEEEeCCCCchh-h-hhc-------CCcccChHh-hhccCCEEEEecCCCccc
Q psy13054 957 ATVGIVGL-GNIGLETAKLLKAF-KVSKILYTSRRVKEE-G-TAL-------GAQLVPLDT-LCAESDFIFVTCALTKDT 1024 (1128)
Q Consensus 957 ktvGIIG~-G~IG~~vA~~l~af-G~~Vi~~d~~~~~~~-~-~~~-------g~~~~~l~e-ll~~sDvV~l~lPlt~~T 1024 (1128)
.+|+|||. |.+|+.+++.+... +++++.+.++..... . ... ...+.++++ .+.++|+|++|+|.. ..
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~-~~ 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHG-VS 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcH-HH
Confidence 58999997 99999999999877 677766544332221 1 111 111223433 457899999999953 22
Q ss_pred ccccCHHHHc-cCCCCcEEEEcCCCcccCH
Q psy13054 1025 EQLIGRKQFS-LMKPTAILVNTSRGGLLDQ 1053 (1128)
Q Consensus 1025 ~~li~~~~l~-~mk~ga~lIN~aRG~lVde 1053 (1128)
.+... ..+.|..+|+.|-.-=.+.
T Consensus 82 -----~~~v~~a~~aG~~VID~S~~fR~~~ 106 (343)
T PRK00436 82 -----MDLAPQLLEAGVKVIDLSADFRLKD 106 (343)
T ss_pred -----HHHHHHHHhCCCEEEECCcccCCCC
Confidence 22222 2357899999985444433
No 375
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=89.82 E-value=0.43 Score=51.92 Aligned_cols=32 Identities=34% Similarity=0.579 Sum_probs=27.1
Q ss_pred EEEEEecChhhHHHHHHHh----hCCCeEEEEcCCCc
Q psy13054 703 TVGIVGLGNIGLETAKLLK----AFKVSKILYTSRRV 735 (1128)
Q Consensus 703 tvGIiG~G~IG~~va~r~~----afg~~vi~y~~~~~ 735 (1128)
+|||||||+||+.+.+..+ .|.. +++||....
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~-v~v~D~~~e 37 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFEL-VAVYDRDEE 37 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeE-EEEecCCHH
Confidence 6999999999999999998 4776 788887543
No 376
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=89.73 E-value=0.36 Score=54.69 Aligned_cols=31 Identities=32% Similarity=0.401 Sum_probs=29.1
Q ss_pred EEEEEecChhhHHHHHHHhhCCCeEEEEcCC
Q psy13054 703 TVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128)
Q Consensus 703 tvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128)
+|||||+|.||+.+|+.++..|.+|.+||++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence 6999999999999999999999999999974
No 377
>PRK09414 glutamate dehydrogenase; Provisional
Probab=89.72 E-value=0.64 Score=56.04 Aligned_cols=36 Identities=14% Similarity=0.271 Sum_probs=33.0
Q ss_pred CCCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcC
Q psy13054 697 MGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTS 732 (1128)
Q Consensus 697 ~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~ 732 (1128)
.+++|+||.|.|+|++|+.+|+.+..+|++|++...
T Consensus 228 ~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 228 DSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 358999999999999999999999999999999833
No 378
>PRK11579 putative oxidoreductase; Provisional
Probab=89.72 E-value=0.66 Score=54.15 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=43.4
Q ss_pred CeEEEEEcChhhHH-HHHHHhhC-CCEEEEEeCCCCchhhhhc-CCc-ccChHhhhc--cCCEEEEecCCC
Q psy13054 957 ATVGIVGLGNIGLE-TAKLLKAF-KVSKILYTSRRVKEEGTAL-GAQ-LVPLDTLCA--ESDFIFVTCALT 1021 (1128)
Q Consensus 957 ktvGIIG~G~IG~~-vA~~l~af-G~~Vi~~d~~~~~~~~~~~-g~~-~~~l~ell~--~sDvV~l~lPlt 1021 (1128)
-++||||+|.||+. .+..++.. +++++++.++......... +.. +.+++++++ .-|+|+++.|..
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~ 75 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPND 75 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcH
Confidence 37999999999985 45655543 7888765443322222222 232 458999996 479999999943
No 379
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=89.72 E-value=5.5 Score=46.50 Aligned_cols=93 Identities=14% Similarity=0.188 Sum_probs=63.3
Q ss_pred cCCCeEEEEEcC--hhhHHHHHHHhhCCCEEEEEeCCCCch--h--------hhhcCCcc---cChHhhhccCCEEEEec
Q psy13054 954 LKGATVGIVGLG--NIGLETAKLLKAFKVSKILYTSRRVKE--E--------GTALGAQL---VPLDTLCAESDFIFVTC 1018 (1128)
Q Consensus 954 L~gktvGIIG~G--~IG~~vA~~l~afG~~Vi~~d~~~~~~--~--------~~~~g~~~---~~l~ell~~sDvV~l~l 1018 (1128)
+.|++|++||-+ ++.+..+..+..||++|.+..|..-.+ . ++..|... .++++.++.+|||..-.
T Consensus 154 l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~ 233 (334)
T PRK12562 154 FNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTDV 233 (334)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 679999999986 789999999999999999887764221 1 11234332 48999999999999743
Q ss_pred ----CCCc----c-----cccccCHHHHccC-CCCcEEEEcC
Q psy13054 1019 ----ALTK----D-----TEQLIGRKQFSLM-KPTAILVNTS 1046 (1128)
Q Consensus 1019 ----Plt~----~-----T~~li~~~~l~~m-k~ga~lIN~a 1046 (1128)
.... + -..-++.+.++.. |++++|.-+.
T Consensus 234 w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcL 275 (334)
T PRK12562 234 WVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCL 275 (334)
T ss_pred ccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCC
Confidence 1000 0 1223577777764 6777776653
No 380
>PRK06270 homoserine dehydrogenase; Provisional
Probab=89.71 E-value=1 Score=52.70 Aligned_cols=108 Identities=15% Similarity=0.202 Sum_probs=63.8
Q ss_pred eEEEEEcChhhHHHHHHHhhC----------CCEEEEEeCCCC--------ch-h----hhhcCC--------cccChHh
Q psy13054 958 TVGIVGLGNIGLETAKLLKAF----------KVSKILYTSRRV--------KE-E----GTALGA--------QLVPLDT 1006 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~af----------G~~Vi~~d~~~~--------~~-~----~~~~g~--------~~~~l~e 1006 (1128)
+|||+|+|.||+.+++.++.. +++|+..-++.. .. . ....+. ...++++
T Consensus 4 ~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~e 83 (341)
T PRK06270 4 KIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGLE 83 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHHH
Confidence 699999999999999998644 677665433210 11 1 111111 1137888
Q ss_pred hhc--cCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcc-cCHHHHHHHHhcCCc
Q psy13054 1007 LCA--ESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGL-LDQEALVEFLKDKKI 1065 (1128)
Q Consensus 1007 ll~--~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~l-Vde~aL~~aL~~g~i 1065 (1128)
++. ..|+|+.++|....+...--.-..+.++.|.-+|-..-+.+ ...+.|.++.++...
T Consensus 84 ll~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~ 145 (341)
T PRK06270 84 VIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV 145 (341)
T ss_pred HhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence 874 68999999996554322211223455666666665433332 245677777666544
No 381
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=89.70 E-value=2.3 Score=47.63 Aligned_cols=164 Identities=13% Similarity=0.061 Sum_probs=103.4
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-----------EEEEEeCCC-------C-chhhhh------cCCcccChHhh
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-----------SKILYTSRR-------V-KEEGTA------LGAQLVPLDTL 1007 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-----------~Vi~~d~~~-------~-~~~~~~------~g~~~~~l~el 1007 (1128)
.+...++.|+|.|..|-.+|+.+...++ +++.+|+.. . .+.... ..-...+|.|+
T Consensus 22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~ea 101 (254)
T cd00762 22 KISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDA 101 (254)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHH
Confidence 4678899999999999999999988776 467776552 1 111111 11123489999
Q ss_pred hc--cCCEEEEecCCCcccccccCHHHHccCC---CCcEEEEcCCCcc---cCHHHHHHHHhcCCceEEEEeccCCCCCC
Q psy13054 1008 CA--ESDFIFVTCALTKDTEQLIGRKQFSLMK---PTAILVNTSRGGL---LDQEALVEFLKDKKIGGAGLDVMIPEPLP 1079 (1128)
Q Consensus 1008 l~--~sDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aRG~l---Vde~aL~~aL~~g~i~gaaLDV~e~EPl~ 1079 (1128)
++ ..|+++= ....-++|.++.++.|. +..++.=.|+... +..++.+++=+...|.+.|.-.+..+--.
T Consensus 102 v~~~kptvlIG----~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~~g 177 (254)
T cd00762 102 VEAAKPDFLIG----VSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVELNG 177 (254)
T ss_pred HHhhCCCEEEE----eCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCCCCcccCC
Confidence 99 9999984 22334899999999999 9999999988876 34455555433334544432111111100
Q ss_pred CCCccccCCCeEECCCCCCCc-----HHHHHHHHHHHHHHHHHHHc
Q psy13054 1080 ADHPLVQLDNCVLTPHTSSAT-----KAVRDEKSSTSAENIIRGYK 1120 (1128)
Q Consensus 1080 ~~~pL~~~pNvilTPHiag~t-----~e~~~~~~~~~~~nl~~~l~ 1120 (1128)
.....-+.-|+++=|=++-.. ....++|...+++.|..+..
T Consensus 178 ~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~ 223 (254)
T cd00762 178 GTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVT 223 (254)
T ss_pred ceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCC
Confidence 111222567899999765322 22335666667777766654
No 382
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=89.66 E-value=0.42 Score=54.71 Aligned_cols=109 Identities=17% Similarity=0.226 Sum_probs=66.0
Q ss_pred EEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchhh-----hhc----C----Ccc-cChHhhhccCCEEEEecCCCcc
Q psy13054 959 VGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEEG-----TAL----G----AQL-VPLDTLCAESDFIFVTCALTKD 1023 (1128)
Q Consensus 959 vGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~~-----~~~----g----~~~-~~l~ell~~sDvV~l~lPlt~~ 1023 (1128)
|+|||.|.+|..+|..+...|. +|+++|........ .+. + ++. .+. +.++.||+|+++..- |.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g~-p~ 78 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAGI-PR 78 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecCC-CC
Confidence 6899999999999999875554 99999987653221 110 1 111 234 458999999998742 22
Q ss_pred ccc------------ccC--HHHHccCCCCcEEEEcCCCcccCHHHHHHHH--hcCCceEEE
Q psy13054 1024 TEQ------------LIG--RKQFSLMKPTAILVNTSRGGLLDQEALVEFL--KDKKIGGAG 1069 (1128)
Q Consensus 1024 T~~------------li~--~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL--~~g~i~gaa 1069 (1128)
..+ ++. .+.+....|.+++|+.+-..-+-...+.+.. ...++.|.+
T Consensus 79 ~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlg 140 (300)
T cd01339 79 KPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMA 140 (300)
T ss_pred CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEec
Confidence 111 111 1234455678888888855544444454442 223566665
No 383
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=89.60 E-value=0.51 Score=45.62 Aligned_cols=83 Identities=18% Similarity=0.244 Sum_probs=56.0
Q ss_pred EEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-----C---hHh-hhccCCEEEEecCCCccccccc
Q psy13054 959 VGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-----P---LDT-LCAESDFIFVTCALTKDTEQLI 1028 (1128)
Q Consensus 959 vGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-----~---l~e-ll~~sDvV~l~lPlt~~T~~li 1028 (1128)
+-|+|+|.+|+.+++.|+..+.+|++.+....... ..+.++... + |.+ =+.++|.|+++.+....+..+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~- 79 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLI- 79 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHH-
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHH-
Confidence 56999999999999999997769999997766544 444554332 2 222 357899999998865544332
Q ss_pred CHHHHccCCCCcEEE
Q psy13054 1029 GRKQFSLMKPTAILV 1043 (1128)
Q Consensus 1029 ~~~~l~~mk~ga~lI 1043 (1128)
...++.+.+...+|
T Consensus 80 -~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 80 -ALLARELNPDIRII 93 (116)
T ss_dssp -HHHHHHHTTTSEEE
T ss_pred -HHHHHHHCCCCeEE
Confidence 34555555655555
No 384
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=89.58 E-value=0.32 Score=53.23 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=30.3
Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCCC
Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128)
Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128)
+++|.||+|+.|..+.+|+.--|-+|++||..+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~ 33 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQ 33 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCH
Confidence 369999999999999999999999999999754
No 385
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=89.41 E-value=0.53 Score=53.62 Aligned_cols=68 Identities=19% Similarity=0.192 Sum_probs=48.5
Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--hhhc----CC---cccC---hHhhhccCCEEEEecCC
Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--GTAL----GA---QLVP---LDTLCAESDFIFVTCAL 1020 (1128)
Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~~~~----g~---~~~~---l~ell~~sDvV~l~lPl 1020 (1128)
+.+|++.|+|.|-.|++++--|...|+ ++.++|+...+.+ .... +. ...+ +++.+..+|+|+++.|.
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~ 204 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPM 204 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCC
Confidence 458999999999999999999999998 6778876655443 2111 11 1112 24466789999999985
Q ss_pred C
Q psy13054 1021 T 1021 (1128)
Q Consensus 1021 t 1021 (1128)
.
T Consensus 205 G 205 (283)
T PRK14027 205 G 205 (283)
T ss_pred C
Confidence 4
No 386
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=89.41 E-value=0.35 Score=57.13 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=32.7
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCC
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSR 988 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~ 988 (1128)
.|.+++|.|||+|.+|..+++.|...|. ++.++|..
T Consensus 38 ~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 38 RLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 6899999999999999999999999997 77778765
No 387
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=89.40 E-value=0.91 Score=53.38 Aligned_cols=81 Identities=22% Similarity=0.315 Sum_probs=58.0
Q ss_pred cCCCeEEEEEcC----------hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhc-CCccc-ChHhhhccCCEEEEecCCC
Q psy13054 954 LKGATVGIVGLG----------NIGLETAKLLKAFKVSKILYTSRRVKEEGTAL-GAQLV-PLDTLCAESDFIFVTCALT 1021 (1128)
Q Consensus 954 L~gktvGIIG~G----------~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~-g~~~~-~l~ell~~sDvV~l~lPlt 1021 (1128)
+.||||||+|+- .-...++++|+..|++|.+|||-......... ++.+. +++++++.||+++++.- -
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te-w 386 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE-W 386 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc-H
Confidence 899999999984 34678999999999999999976654432221 24444 79999999999998765 3
Q ss_pred cccccccCHHHHccCC
Q psy13054 1022 KDTEQLIGRKQFSLMK 1037 (1128)
Q Consensus 1022 ~~T~~li~~~~l~~mk 1037 (1128)
++-+.+ +-+.+ .||
T Consensus 387 ~ef~~~-d~~~~-~m~ 400 (414)
T COG1004 387 DEFRDL-DFEKL-LMK 400 (414)
T ss_pred HHHhcc-Chhhh-hcc
Confidence 343333 33333 565
No 388
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=89.34 E-value=0.54 Score=59.37 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=62.1
Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-----ChH----hhhccCCEEEEecCCCcccc
Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-----PLD----TLCAESDFIFVTCALTKDTE 1025 (1128)
Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-----~l~----ell~~sDvV~l~lPlt~~T~ 1025 (1128)
...+-|+|+|++|+.+++.|++.|.++++.|.+.++.+ .++.|.... +.+ .=+.++|.++++.+..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 46799999999999999999999999999998777655 444454321 222 23458999999998777665
Q ss_pred cccCHHHHccCCCCcEEEEc
Q psy13054 1026 QLIGRKQFSLMKPTAILVNT 1045 (1128)
Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~ 1045 (1128)
.++ ...+.+.|+..+|--
T Consensus 480 ~i~--~~ar~~~p~~~iiaR 497 (621)
T PRK03562 480 QLV--ELVKEHFPHLQIIAR 497 (621)
T ss_pred HHH--HHHHHhCCCCeEEEE
Confidence 543 234445566555443
No 389
>PRK14030 glutamate dehydrogenase; Provisional
Probab=89.32 E-value=0.77 Score=55.27 Aligned_cols=33 Identities=27% Similarity=0.470 Sum_probs=31.6
Q ss_pred CCCCCCEEEEEecChhhHHHHHHHhhCCCeEEE
Q psy13054 697 MGLKGATVGIVGLGNIGLETAKLLKAFKVSKIL 729 (1128)
Q Consensus 697 ~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~ 729 (1128)
.+++|+||.|=|+||+|+..|+.|..+|++|++
T Consensus 224 ~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVa 256 (445)
T PRK14030 224 IDIKGKTVAISGFGNVAWGAATKATELGAKVVT 256 (445)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence 468999999999999999999999999999999
No 390
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=89.24 E-value=0.66 Score=50.57 Aligned_cols=36 Identities=36% Similarity=0.368 Sum_probs=32.2
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCE-EEEEeCC
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVS-KILYTSR 988 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~-Vi~~d~~ 988 (1128)
.|..++|+|||+|.+|..+|+.|...|.. +.++|..
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 68999999999999999999999888885 7777766
No 391
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=89.20 E-value=1.5 Score=47.94 Aligned_cols=91 Identities=25% Similarity=0.319 Sum_probs=58.6
Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc-c-----ChHh-h----hccCCEEEEecCCCc
Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL-V-----PLDT-L----CAESDFIFVTCALTK 1022 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~-~-----~l~e-l----l~~sDvV~l~lPlt~ 1022 (1128)
.|++|.|+|.|.+|+.+++.++..|.+|++.++...+.+ ....+... . +..+ + -...|+++.+++...
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~ 213 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPE 213 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHH
Confidence 578999999999999999999999999988876544333 22333211 0 1111 1 234677777665321
Q ss_pred ccccccCHHHHccCCCCcEEEEcCCCcc
Q psy13054 1023 DTEQLIGRKQFSLMKPTAILVNTSRGGL 1050 (1128)
Q Consensus 1023 ~T~~li~~~~l~~mk~ga~lIN~aRG~l 1050 (1128)
.-...++.|+++..+|+.+....
T Consensus 214 -----~~~~~~~~l~~~G~~v~~~~~~~ 236 (271)
T cd05188 214 -----TLAQALRLLRPGGRIVVVGGTSG 236 (271)
T ss_pred -----HHHHHHHhcccCCEEEEEccCCC
Confidence 12345667777777777765543
No 392
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=89.19 E-value=0.48 Score=53.63 Aligned_cols=93 Identities=20% Similarity=0.233 Sum_probs=70.5
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcC--------------Cccc-----------ChHh
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALG--------------AQLV-----------PLDT 1006 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g--------------~~~~-----------~l~e 1006 (1128)
...+.++-++|+|-+|-..+-..+-.|+-|..+|-+....+ .+..| +-.. -+.|
T Consensus 161 tv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a~ 240 (356)
T COG3288 161 TVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVAE 240 (356)
T ss_pred cccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHHH
Confidence 46778899999999999999999999998888877765433 22122 1111 1356
Q ss_pred hhccCCEEEEe--cCCCcccccccCHHHHccCCCCcEEEEcC
Q psy13054 1007 LCAESDFIFVT--CALTKDTEQLIGRKQFSLMKPTAILVNTS 1046 (1128)
Q Consensus 1007 ll~~sDvV~l~--lPlt~~T~~li~~~~l~~mk~ga~lIN~a 1046 (1128)
..++.|||+.. .|..|.-+ ++.++-.+.||||+++|+.+
T Consensus 241 ~~~~~DivITTAlIPGrpAP~-Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 241 QAKEVDIVITTALIPGRPAPK-LVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HhcCCCEEEEecccCCCCCch-hhHHHHHHhcCCCcEEEEeh
Confidence 78899999965 57666654 88999999999999999974
No 393
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=89.08 E-value=0.61 Score=51.87 Aligned_cols=37 Identities=35% Similarity=0.443 Sum_probs=31.2
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCC
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRR 989 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~ 989 (1128)
.|.+++|.|+|.|.+|..+|+.|...|. ++.++|+..
T Consensus 21 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 21 ALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 6899999999999999999999998886 555666543
No 394
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=89.00 E-value=0.45 Score=56.27 Aligned_cols=81 Identities=17% Similarity=0.167 Sum_probs=51.6
Q ss_pred EEEEEcChhhHHHHHHHhhCC-C-EEEEEeCCCCchh-h-hh---cCCcc--------cChHhhhccCCEEEEecCCCcc
Q psy13054 959 VGIVGLGNIGLETAKLLKAFK-V-SKILYTSRRVKEE-G-TA---LGAQL--------VPLDTLCAESDFIFVTCALTKD 1023 (1128)
Q Consensus 959 vGIIG~G~IG~~vA~~l~afG-~-~Vi~~d~~~~~~~-~-~~---~g~~~--------~~l~ell~~sDvV~l~lPlt~~ 1023 (1128)
|+|+|.|.+|+.+++.|...+ . +|++.|++..+.. . .. ..++. .+|.++++++|+|++|+|..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-- 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-- 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG--
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc--
Confidence 689999999999999998765 4 8899987776643 1 11 11111 13778999999999999844
Q ss_pred cccccCHHHHcc-CCCCcEEEEc
Q psy13054 1024 TEQLIGRKQFSL-MKPTAILVNT 1045 (1128)
Q Consensus 1024 T~~li~~~~l~~-mk~ga~lIN~ 1045 (1128)
++...++. ++.|.-.|++
T Consensus 79 ----~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 79 ----FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp ----GHHHHHHHHHHHT-EEEES
T ss_pred ----hhHHHHHHHHHhCCCeecc
Confidence 22333322 3556666664
No 395
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.96 E-value=0.7 Score=52.93 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=36.0
Q ss_pred cCCCCCCEEEEEecC-hhhHHHHHHHhhCCCeEEEEcCCCc
Q psy13054 696 IMGLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRV 735 (1128)
Q Consensus 696 ~~~l~gktvGIiG~G-~IG~~va~r~~afg~~vi~y~~~~~ 735 (1128)
+.+++||+++|||.| .+|+-+|.+|..-|.+|..||++.+
T Consensus 154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~ 194 (301)
T PRK14194 154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST 194 (301)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC
Confidence 346899999999997 9999999999999999999998654
No 396
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=88.94 E-value=0.98 Score=59.68 Aligned_cols=67 Identities=19% Similarity=0.225 Sum_probs=46.7
Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhC-CCE-------------EEEEeCCCCchh--hhhc-CC---cc--cChHh---hh
Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAF-KVS-------------KILYTSRRVKEE--GTAL-GA---QL--VPLDT---LC 1008 (1128)
Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~af-G~~-------------Vi~~d~~~~~~~--~~~~-g~---~~--~~l~e---ll 1008 (1128)
-..|+|+|||.|.||+..|+.|... +.+ |.+.|++..+.. .... ++ .. .+.++ ++
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v 646 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYV 646 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhh
Confidence 4578999999999999999999654 333 777887665543 2222 32 11 24444 44
Q ss_pred ccCCEEEEecCC
Q psy13054 1009 AESDFIFVTCAL 1020 (1128)
Q Consensus 1009 ~~sDvV~l~lPl 1020 (1128)
+++|+|++++|.
T Consensus 647 ~~~DaVIsalP~ 658 (1042)
T PLN02819 647 SQVDVVISLLPA 658 (1042)
T ss_pred cCCCEEEECCCc
Confidence 689999999995
No 397
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=88.92 E-value=0.2 Score=61.27 Aligned_cols=87 Identities=9% Similarity=0.124 Sum_probs=53.1
Q ss_pred ccchhhhhhhhccCCceEEEcCC--CCCCCCHHHHHH---------hcCCceEEEeCCCCCCCHHHHhccCCCceEEEEc
Q psy13054 42 LLVPESLSKLRFNSRFDIDTYPV--SEGRMPRDIFIE---------KLKGCSALLCNPHQKVDKEVLDRSGENLKVIATF 110 (1128)
Q Consensus 42 ~l~~~~l~~l~~~~~~~v~~~~~--~~~~~~~eel~~---------~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~ 110 (1128)
.+.|+...+|. ...|+|.+-.. .....+.++..+ .+.++|+|+- ...| +.+-++.+.++--+|+..
T Consensus 16 AltP~~v~~L~-k~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~~~~adiIlk-V~~P-~~~e~~~l~~g~tli~~l 92 (511)
T TIGR00561 16 AATPKTVQQLL-KLGFDVLVETGAGAKASFADRAFESAGAGIVDGTLFWQSDIILK-VNAP-SDAEIAELPAGKALVSFI 92 (511)
T ss_pred ccCHHHHHHHH-hCCCEEEEECCCCcCCCcCHHHHHHcCCEEecccchhcCCEEEE-eCCC-CHHHHHhcCCCCEEEEEc
Confidence 57788888775 34677766443 112234444432 1235777763 3333 445567666677777777
Q ss_pred CcccccccHHHHHhCCcEEEe
Q psy13054 111 SVGHDHLHLDEIKSRGIRVGT 131 (1128)
Q Consensus 111 gvG~DnIDl~aa~erGI~V~n 131 (1128)
.-..|.=-++++.++||++.-
T Consensus 93 ~p~~n~~ll~~l~~k~it~ia 113 (511)
T TIGR00561 93 WPAQNPELMEKLAAKNITVLA 113 (511)
T ss_pred CccCCHHHHHHHHHcCCEEEE
Confidence 766655557888999999875
No 398
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=88.80 E-value=0.56 Score=50.56 Aligned_cols=37 Identities=27% Similarity=0.383 Sum_probs=32.7
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCE-EEEEeCCC
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVS-KILYTSRR 989 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~-Vi~~d~~~ 989 (1128)
.|.+++|.|+|+|.+|.++++.|...|.. +.++|+..
T Consensus 18 ~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 18 RLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 68999999999999999999999999984 66777654
No 399
>PRK05086 malate dehydrogenase; Provisional
Probab=88.74 E-value=1.2 Score=51.57 Aligned_cols=93 Identities=17% Similarity=0.229 Sum_probs=58.1
Q ss_pred CeEEEEEc-ChhhHHHHHHHh---hCCCEEEEEeCCCCch----hhhhcC----Cc---ccChHhhhccCCEEEEecCCC
Q psy13054 957 ATVGIVGL-GNIGLETAKLLK---AFKVSKILYTSRRVKE----EGTALG----AQ---LVPLDTLCAESDFIFVTCALT 1021 (1128)
Q Consensus 957 ktvGIIG~-G~IG~~vA~~l~---afG~~Vi~~d~~~~~~----~~~~~g----~~---~~~l~ell~~sDvV~l~lPlt 1021 (1128)
++|+|||. |.||+.++..+. ..+..+..+|...... +..... +. ..++.+.++.+|+|++++-..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 57999999 999999997773 4556788888653321 111101 11 125568889999999987642
Q ss_pred cc---cc-cccC------HH---HHccCCCCcEEEEcCCCc
Q psy13054 1022 KD---TE-QLIG------RK---QFSLMKPTAILVNTSRGG 1049 (1128)
Q Consensus 1022 ~~---T~-~li~------~~---~l~~mk~ga~lIN~aRG~ 1049 (1128)
.. || .++. ++ .+..-.+.+++|+++-..
T Consensus 81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 21 11 1111 22 334446789999997765
No 400
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.73 E-value=0.4 Score=54.30 Aligned_cols=98 Identities=9% Similarity=0.096 Sum_probs=61.0
Q ss_pred eeCCCCCCCCccccc--cCCccccceeeccccccccc---ccccCCccc-CHHHHhhcCCEEEEecCCCcccccccCHHH
Q psy13054 269 FLGPKKNGSQNPKWR--MGSKTDTNHYFGYNWFERSN---GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQ 342 (1128)
Q Consensus 269 ilG~g~iG~~va~~~--~g~~~~~~~~~g~~~~~~~~---~~~~g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn~~~ 342 (1128)
++|.|.+|..+++-. .|.. ...+++.+++..... .+++|++.+ +.+|++++||+|++++| ......+++ +.
T Consensus 7 fIG~G~MG~aia~~L~~~g~~-~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl~-~l 83 (272)
T PRK12491 7 FIGCGNMGIAMIGGMINKNIV-SPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVIN-QI 83 (272)
T ss_pred EECccHHHHHHHHHHHHCCCC-CCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHHH-HH
Confidence 677777777766521 1110 111345555322211 123566554 78889999999999999 455666663 22
Q ss_pred HhcCCCCcEEEEecCCCccCHHHHHHHHH
Q psy13054 343 FSLMKPTAILINTSRGGLLDQEALVEFLK 371 (1128)
Q Consensus 343 l~~MK~gaiLINtaRG~lVDe~AL~~AL~ 371 (1128)
-...+++.++|.+.=| |+.+.|.+.|.
T Consensus 84 ~~~~~~~~lvISi~AG--i~i~~l~~~l~ 110 (272)
T PRK12491 84 KDQIKNDVIVVTIAAG--KSIKSTENEFD 110 (272)
T ss_pred HHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence 2446788999999888 67777776663
No 401
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=88.62 E-value=0.85 Score=54.02 Aligned_cols=72 Identities=18% Similarity=0.152 Sum_probs=49.0
Q ss_pred hhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHH
Q psy13054 895 KARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKL 974 (1128)
Q Consensus 895 ~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~ 974 (1128)
++.|.++...+......... +.+++.-+.|.. .....+.+++|.|||+|.+|..+++.
T Consensus 96 ~~~g~p~~~~~~~s~~~~~~---------------y~r~i~l~~~g~-------~~q~~l~~~~VlvvG~GG~Gs~ia~~ 153 (376)
T PRK08762 96 KDAGLPLERPRLLTDEQDER---------------YSRHLRLPEVGE-------EGQRRLLEARVLLIGAGGLGSPAALY 153 (376)
T ss_pred HhcCCccccccCCCHHHHHH---------------HHHhcchhhcCH-------HHHHHHhcCcEEEECCCHHHHHHHHH
Confidence 45677777777766555433 222222233431 11235899999999999999999999
Q ss_pred HhhCCC-EEEEEeCC
Q psy13054 975 LKAFKV-SKILYTSR 988 (1128)
Q Consensus 975 l~afG~-~Vi~~d~~ 988 (1128)
|...|. ++.++|+.
T Consensus 154 La~~Gvg~i~lvD~d 168 (376)
T PRK08762 154 LAAAGVGTLGIVDHD 168 (376)
T ss_pred HHHcCCCeEEEEeCC
Confidence 999998 67778765
No 402
>PRK06484 short chain dehydrogenase; Validated
Probab=88.54 E-value=5.6 Score=48.81 Aligned_cols=38 Identities=18% Similarity=0.103 Sum_probs=33.3
Q ss_pred ccCCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCC
Q psy13054 953 GLKGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRV 990 (1128)
Q Consensus 953 ~L~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~ 990 (1128)
...||++.|.|. |.||+++|+.|...|++|++.+++..
T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~ 304 (520)
T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAE 304 (520)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 568999999996 78999999999999999999886544
No 403
>PRK10637 cysG siroheme synthase; Provisional
Probab=88.48 E-value=0.77 Score=55.86 Aligned_cols=93 Identities=15% Similarity=0.130 Sum_probs=63.9
Q ss_pred CcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhc-CCccc--C-hHhhhccCCEEEEecCCCc
Q psy13054 949 PNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTAL-GAQLV--P-LDTLCAESDFIFVTCALTK 1022 (1128)
Q Consensus 949 ~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~-g~~~~--~-l~ell~~sDvV~l~lPlt~ 1022 (1128)
|.+.++.||+|.|||-|.++.+=++.|..+|++|.++.+...... .... .+++. . .++.+..+++|+.+....+
T Consensus 5 P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~ 84 (457)
T PRK10637 5 PIFCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDA 84 (457)
T ss_pred ceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHH
Confidence 445589999999999999999999999999999999976654332 1111 22221 1 2456678888777765432
Q ss_pred ccccccCHHHHccCCCCcEEEEcC
Q psy13054 1023 DTEQLIGRKQFSLMKPTAILVNTS 1046 (1128)
Q Consensus 1023 ~T~~li~~~~l~~mk~ga~lIN~a 1046 (1128)
+|+...+.++...+++|++
T Consensus 85 -----~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 85 -----VNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred -----HhHHHHHHHHHcCcEEEEC
Confidence 4666666666666777763
No 404
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=88.48 E-value=0.44 Score=56.73 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=28.0
Q ss_pred CEEEEEecChhhHHHHHHHhh-CCCeEEE-EcCC
Q psy13054 702 ATVGIVGLGNIGLETAKLLKA-FKVSKIL-YTSR 733 (1128)
Q Consensus 702 ktvGIiG~G~IG~~va~r~~a-fg~~vi~-y~~~ 733 (1128)
.+|||.|+|+||+.++|.+.+ ++|++++ +||.
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~ 119 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPF 119 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCC
Confidence 489999999999999999885 8999998 5654
No 405
>PRK14031 glutamate dehydrogenase; Provisional
Probab=88.38 E-value=0.96 Score=54.47 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=33.7
Q ss_pred cCCCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcC
Q psy13054 696 IMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTS 732 (1128)
Q Consensus 696 ~~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~ 732 (1128)
+.+++||||.|.|+||+|+..|+.|..+|++|++..+
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 3468999999999999999999999999999999655
No 406
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.33 E-value=0.87 Score=55.54 Aligned_cols=108 Identities=22% Similarity=0.237 Sum_probs=69.9
Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhc--CCccc---ChHhhhccCCEEEEecCCCccc--
Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTAL--GAQLV---PLDTLCAESDFIFVTCALTKDT-- 1024 (1128)
Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~--g~~~~---~l~ell~~sDvV~l~lPlt~~T-- 1024 (1128)
+.||+++|+|+|.-|+++|+.|+..|++|+++|.+..... ..+. +.... ...+.+.+.|+|+..- .-+.+
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~Sp-gI~~~~p 84 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSP-GISPYRP 84 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECC-CCCCCCH
Confidence 4689999999999999999999999999999996543221 1111 22221 1235667899887643 22221
Q ss_pred ---------ccccCHHHH--cc-CC-----CCcEEEEcCCCcccCHHHHHHHHhc
Q psy13054 1025 ---------EQLIGRKQF--SL-MK-----PTAILVNTSRGGLLDQEALVEFLKD 1062 (1128)
Q Consensus 1025 ---------~~li~~~~l--~~-mk-----~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128)
..++++-.| .. ++ ...+-|-=+.|+.-...-+...|+.
T Consensus 85 ~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 139 (468)
T PRK04690 85 EALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA 139 (468)
T ss_pred HHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 124554443 33 32 2456677788888777777777764
No 407
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=88.33 E-value=1.4 Score=51.54 Aligned_cols=88 Identities=25% Similarity=0.379 Sum_probs=57.8
Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcCCccc-------ChHhhhccCCEEEEecCCCcccc
Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALGAQLV-------PLDTLCAESDFIFVTCALTKDTE 1025 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~-------~l~ell~~sDvV~l~lPlt~~T~ 1025 (1128)
.|++|.|.|.|.||...++.++++|.+|++.+...++.. ..+.|+..+ .+.++....|+|+-+... +.+
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~-~~~- 260 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSA-VHA- 260 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCC-HHH-
Confidence 578999999999999999999999999888766554422 334555321 122333346777766542 111
Q ss_pred cccCHHHHccCCCCcEEEEcCC
Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSR 1047 (1128)
Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aR 1047 (1128)
+ ...++.++++..+|.++.
T Consensus 261 --~-~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 261 --L-GPLLGLLKVNGKLITLGL 279 (360)
T ss_pred --H-HHHHHHhcCCcEEEEeCC
Confidence 2 235667777777777753
No 408
>KOG0023|consensus
Probab=88.32 E-value=0.42 Score=54.50 Aligned_cols=38 Identities=32% Similarity=0.485 Sum_probs=34.6
Q ss_pred CCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCccc
Q psy13054 700 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 737 (1128)
Q Consensus 700 ~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~~~ 737 (1128)
.||.+||+|+|.+|.--.+.+|||||+|.+.|....+.
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kk 218 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKK 218 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhH
Confidence 69999999999999999999999999999999865444
No 409
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=88.29 E-value=0.73 Score=47.97 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=48.6
Q ss_pred EEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcc--------cChHhhhccCCEEEEecCCCcc
Q psy13054 959 VGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQL--------VPLDTLCAESDFIFVTCALTKD 1023 (1128)
Q Consensus 959 vGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~--------~~l~ell~~sDvV~l~lPlt~~ 1023 (1128)
|.|+|. |.+|+.+++.|..-|.+|.+..++..+... ..+++. .++.+.++.+|+|+.+++.+..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~ 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence 678995 999999999999999999999877654332 223222 2456788899999999985444
No 410
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=88.26 E-value=0.99 Score=52.18 Aligned_cols=88 Identities=18% Similarity=0.169 Sum_probs=62.2
Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChH-hhhccCCEEEEecCCCcccccccCHH
Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLD-TLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~-ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
.|.+|.|.|.|.+|...++.++++|++|++.+++..+.+ +++.|+..+ +.. +.-...|+++.+.... + .+ ..
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~---~~-~~ 239 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G---LV-PP 239 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H---HH-HH
Confidence 478999999999999999999999999888877665554 666776543 211 1112357766655432 2 22 35
Q ss_pred HHccCCCCcEEEEcCC
Q psy13054 1032 QFSLMKPTAILVNTSR 1047 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aR 1047 (1128)
.++.++++..++.++-
T Consensus 240 ~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 240 ALEALDRGGVLAVAGI 255 (329)
T ss_pred HHHhhCCCcEEEEEec
Confidence 7788899999988774
No 411
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=88.25 E-value=0.98 Score=50.81 Aligned_cols=45 Identities=29% Similarity=0.372 Sum_probs=34.9
Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCE-EEEEeCCCCchh-hhhcCC
Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVS-KILYTSRRVKEE-GTALGA 999 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~-Vi~~d~~~~~~~-~~~~g~ 999 (1128)
.|++|.|+|.|.||...++.++++|++ |++.+....+.+ +++.|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga 166 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGA 166 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC
Confidence 588999999999999999999999997 776654444433 444554
No 412
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=88.25 E-value=0.95 Score=51.81 Aligned_cols=62 Identities=16% Similarity=0.211 Sum_probs=49.8
Q ss_pred CHHHHh---hcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCee
Q psy13054 313 PLDTLC---AESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIG 376 (1128)
Q Consensus 313 sLdeLl---~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~Ia 376 (1128)
+++++. +++|+|++.+|-. .++.++ ++....+++|.++|+++-+.--+...+.+.+++..+.
T Consensus 49 s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~ 113 (298)
T TIGR00872 49 NLRELSQRLSAPRVVWVMVPHG-IVDAVL-EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH 113 (298)
T ss_pred CHHHHHhhcCCCCEEEEEcCch-HHHHHH-HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe
Confidence 566654 5689999999977 788887 3566788999999999888878888888888876553
No 413
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=88.14 E-value=0.58 Score=49.65 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=28.0
Q ss_pred EEEEEecChhhHHHHHHHhhCCCeEEEEcCCC
Q psy13054 703 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128)
Q Consensus 703 tvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128)
+|||||.|.+|+.+|..+...|++|..||+..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 69999999999999999999999999999843
No 414
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=88.05 E-value=0.52 Score=49.07 Aligned_cols=35 Identities=31% Similarity=0.433 Sum_probs=29.0
Q ss_pred CCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCC
Q psy13054 699 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128)
Q Consensus 699 l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128)
|+||||.|||||+-|.+.|.-|+--|.+|+.-.+.
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~ 36 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLRE 36 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-T
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecC
Confidence 57999999999999999999999999998876543
No 415
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.99 E-value=0.98 Score=54.90 Aligned_cols=107 Identities=18% Similarity=0.217 Sum_probs=66.7
Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhc---CCcccChHhhhccCCEEEEecCCCccc-----
Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTAL---GAQLVPLDTLCAESDFIFVTCALTKDT----- 1024 (1128)
Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~---g~~~~~l~ell~~sDvV~l~lPlt~~T----- 1024 (1128)
-.||+|+|+|+|.-|+++++.|+. |++|+++|....... ..+. .+.-....+.+.++|+|+.. |.-+.+
T Consensus 4 ~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~S-PgI~~~~p~~~ 81 (454)
T PRK01368 4 HTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLS-PGIPLTHEIVK 81 (454)
T ss_pred CCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEEC-CCCCCCCHHHH
Confidence 357899999999999999999996 999999995543221 1111 11101123456789988764 322221
Q ss_pred ------ccccCHHHH--ccCCC-CcEEEEcCCCcccCHHHHHHHHhc
Q psy13054 1025 ------EQLIGRKQF--SLMKP-TAILVNTSRGGLLDQEALVEFLKD 1062 (1128)
Q Consensus 1025 ------~~li~~~~l--~~mk~-ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128)
..++++-+| ..+++ ..+=|-=+.|+.-...-+...|+.
T Consensus 82 ~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~ 128 (454)
T PRK01368 82 IAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS 128 (454)
T ss_pred HHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 124444333 23332 355566688888877777777876
No 416
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=87.94 E-value=1.1 Score=55.98 Aligned_cols=68 Identities=13% Similarity=0.174 Sum_probs=50.4
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcC--CcccC---hHhhhccCCEEEEecCC
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALG--AQLVP---LDTLCAESDFIFVTCAL 1020 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g--~~~~~---l~ell~~sDvV~l~lPl 1020 (1128)
.+..|+|||||-|..|+.+++.++.+|++|+++|+....+. ..+.. ..+.+ +.++.+++|+|+.....
T Consensus 19 ~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~ 93 (577)
T PLN02948 19 GVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEH 93 (577)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCC
Confidence 47889999999999999999999999999999998765333 11111 11233 56677889999766443
No 417
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=87.93 E-value=2.4 Score=43.04 Aligned_cols=96 Identities=21% Similarity=0.299 Sum_probs=67.7
Q ss_pred HHHHHHhhCCCEEEEEeCCCCc-----hhhhhcCCcccCh-HhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEE
Q psy13054 970 ETAKLLKAFKVSKILYTSRRVK-----EEGTALGAQLVPL-DTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILV 1043 (1128)
Q Consensus 970 ~vA~~l~afG~~Vi~~d~~~~~-----~~~~~~g~~~~~l-~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI 1043 (1128)
..+++|...|.+|++=...... .+..+.|+..++- ++++++||+|+-.=|.+ .+.++.|++|.++|
T Consensus 18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li 89 (136)
T PF05222_consen 18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLI 89 (136)
T ss_dssp HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE
T ss_pred HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEE
Confidence 4567788889998764333211 1245567777754 58999999999766643 67889999999999
Q ss_pred EcCCCcccCHHHHHHHHhcCCceEEEEeccCC
Q psy13054 1044 NTSRGGLLDQEALVEFLKDKKIGGAGLDVMIP 1075 (1128)
Q Consensus 1044 N~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~ 1075 (1128)
-...-. ....+++.|.++++...++|-...
T Consensus 90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 90 GFLHPA--QNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp EE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred Eeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence 887766 488899999999999888876543
No 418
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=87.81 E-value=0.71 Score=46.94 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=31.0
Q ss_pred CCCCCEEEEEecChhhHHHHHHHhhCC-CeEEEEcCC
Q psy13054 698 GLKGATVGIVGLGNIGLETAKLLKAFK-VSKILYTSR 733 (1128)
Q Consensus 698 ~l~gktvGIiG~G~IG~~va~r~~afg-~~vi~y~~~ 733 (1128)
++++++++|+|.|.+|+.+++.+...| .++.+|++.
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~ 52 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT 52 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 467899999999999999999999886 678888764
No 419
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=87.79 E-value=0.38 Score=49.02 Aligned_cols=91 Identities=22% Similarity=0.315 Sum_probs=57.8
Q ss_pred eEEEEEc-ChhhHHHHHHHh--hCCCEEEEEeCCCCchh--hhhc-------CC--c-ccChHhhhccCCEEEEecCC--
Q psy13054 958 TVGIVGL-GNIGLETAKLLK--AFKVSKILYTSRRVKEE--GTAL-------GA--Q-LVPLDTLCAESDFIFVTCAL-- 1020 (1128)
Q Consensus 958 tvGIIG~-G~IG~~vA~~l~--afG~~Vi~~d~~~~~~~--~~~~-------g~--~-~~~l~ell~~sDvV~l~lPl-- 1020 (1128)
+|+|||. |++|..+|-.|. .++-+++.+|....... +.+. .. . .....+.++.||+|+++.-.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~~ 81 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVPR 81 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTSS
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccccc
Confidence 7999999 999999999985 55568999997755443 1111 01 1 12567889999999998843
Q ss_pred Cc-ccc-ccc--CH-------HHHccCCCCcEEEEcCCC
Q psy13054 1021 TK-DTE-QLI--GR-------KQFSLMKPTAILVNTSRG 1048 (1128)
Q Consensus 1021 t~-~T~-~li--~~-------~~l~~mk~ga~lIN~aRG 1048 (1128)
.+ ++| .++ |. +.+.+..|.+++|.++..
T Consensus 82 ~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNP 120 (141)
T PF00056_consen 82 KPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNP 120 (141)
T ss_dssp STTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSS
T ss_pred cccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCc
Confidence 22 121 111 11 234455678888888543
No 420
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=87.74 E-value=1 Score=52.62 Aligned_cols=59 Identities=20% Similarity=0.232 Sum_probs=44.2
Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhh--hhcC--CcccC---hHhhhccCCEEEE
Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG--TALG--AQLVP---LDTLCAESDFIFV 1016 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~--~~~g--~~~~~---l~ell~~sDvV~l 1016 (1128)
||||||-|..|+.+++.++.+|.+|+++|+....+.. .+.. ..+.+ +.++++.+|+|+.
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~ 66 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITF 66 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEe
Confidence 6999999999999999999999999999886644431 1111 11223 6778888998864
No 421
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.73 E-value=1.1 Score=54.27 Aligned_cols=111 Identities=15% Similarity=0.190 Sum_probs=71.6
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh---hhh--cCCccc--C-hHhhhccCCEEEEecCCCc--
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE---GTA--LGAQLV--P-LDTLCAESDFIFVTCALTK-- 1022 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~---~~~--~g~~~~--~-l~ell~~sDvV~l~lPlt~-- 1022 (1128)
++.++++.|+|.|.+|..+|+.|...|.+|.++|.....+. ... .|+... . -++.+..+|+|+..---.+
T Consensus 2 ~~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~ 81 (445)
T PRK04308 2 TFQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQ 81 (445)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCC
Confidence 35689999999999999999999999999999986654321 111 255432 1 2345578999886433222
Q ss_pred -ccc-------cccCH-HHHcc-CC---CCcEEEEcCCCcccCHHHHHHHHhcC
Q psy13054 1023 -DTE-------QLIGR-KQFSL-MK---PTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128)
Q Consensus 1023 -~T~-------~li~~-~~l~~-mk---~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128)
.-+ .++++ +.+.. ++ ...+-|-=+.|+.-...-+...|+..
T Consensus 82 p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~ 135 (445)
T PRK04308 82 PDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKC 135 (445)
T ss_pred HHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence 211 13322 33333 32 24566666888888777777778753
No 422
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=87.66 E-value=0.66 Score=56.53 Aligned_cols=75 Identities=17% Similarity=0.205 Sum_probs=62.6
Q ss_pred cCHHHHhh---cCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCC
Q psy13054 312 VPLDTLCA---ESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEP 387 (1128)
Q Consensus 312 vsLdeLl~---~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EP 387 (1128)
.+++|+++ ++|+|++.+|-...++.++ ...+..+++|.++|+.+-+.--|...+.+.+++..+.....=|.-.++
T Consensus 55 ~s~~e~v~~l~~~d~Iil~v~~~~~v~~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~ 132 (470)
T PTZ00142 55 HTLEELVNSLKKPRKVILLIKAGEAVDETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE 132 (470)
T ss_pred CCHHHHHhcCCCCCEEEEEeCChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence 48999987 5899999999999999998 456778999999999999999999999999999877655554555444
No 423
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=87.58 E-value=0.48 Score=55.72 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=32.0
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCC
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRR 989 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~ 989 (1128)
.|.+++|.|||+|.+|..+++.|...|. ++.++|...
T Consensus 25 ~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 25 SLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 6899999999999999999999998887 566666554
No 424
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=87.58 E-value=6.1 Score=46.58 Aligned_cols=65 Identities=15% Similarity=0.228 Sum_probs=46.9
Q ss_pred ccCCCeEEEEEcC--------hhhHHHHHHHhhCCCEEEEEeCCCCc--hh-h-------hhcCCcc---cChHhhhccC
Q psy13054 953 GLKGATVGIVGLG--------NIGLETAKLLKAFKVSKILYTSRRVK--EE-G-------TALGAQL---VPLDTLCAES 1011 (1128)
Q Consensus 953 ~L~gktvGIIG~G--------~IG~~vA~~l~afG~~Vi~~d~~~~~--~~-~-------~~~g~~~---~~l~ell~~s 1011 (1128)
.+.|+||+|+|.| ++.+..+..+..|||+|.+..|..-. +. . ++.|.+. .++++.++.+
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a 246 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA 246 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 3789999999864 34467788899999999998776321 11 1 1345432 4899999999
Q ss_pred CEEEEe
Q psy13054 1012 DFIFVT 1017 (1128)
Q Consensus 1012 DvV~l~ 1017 (1128)
|||..-
T Consensus 247 Dvvyt~ 252 (357)
T TIGR03316 247 DIVYPK 252 (357)
T ss_pred CEEEEC
Confidence 999975
No 425
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=87.49 E-value=1.7 Score=49.88 Aligned_cols=109 Identities=20% Similarity=0.133 Sum_probs=71.5
Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hh-hcCCcc------------cChHhhhccCCEEEEecCCCc
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GT-ALGAQL------------VPLDTLCAESDFIFVTCALTK 1022 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~-~~g~~~------------~~l~ell~~sDvV~l~lPlt~ 1022 (1128)
.+|+|+|.|.||.-+|-+|...|.+|.++++.....+ .. +.|... ....+.....|+|++++-..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~- 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY- 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence 4799999999999999999999999999987543222 11 112211 11122345789999988743
Q ss_pred ccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE
Q psy13054 1023 DTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128)
Q Consensus 1023 ~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128)
++...+ +.....+.+++.+|-.--|= -.++.+.+.+.+.++.++
T Consensus 82 ~~~~al-~~l~~~l~~~t~vv~lQNGv-~~~e~l~~~~~~~~v~~g 125 (305)
T PRK05708 82 DAEPAV-ASLAHRLAPGAELLLLQNGL-GSQDAVAARVPHARCIFA 125 (305)
T ss_pred hHHHHH-HHHHhhCCCCCEEEEEeCCC-CCHHHHHHhCCCCcEEEE
Confidence 344443 23445567888888776653 456667777766666554
No 426
>PLN02477 glutamate dehydrogenase
Probab=87.49 E-value=1.2 Score=53.25 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=32.4
Q ss_pred CCCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcC
Q psy13054 697 MGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTS 732 (1128)
Q Consensus 697 ~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~ 732 (1128)
.+++|+||.|.|+|++|+.+|+.|...|++|++...
T Consensus 202 ~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD 237 (410)
T PLN02477 202 KSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSD 237 (410)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEC
Confidence 358999999999999999999999999999996544
No 427
>PRK08223 hypothetical protein; Validated
Probab=87.45 E-value=1.2 Score=50.77 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=31.3
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCC
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRR 989 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~ 989 (1128)
.|++++|.|||+|.+|..+|+.|...|. ++.++|...
T Consensus 24 kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 24 RLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 6899999999999999999999998887 455666543
No 428
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=87.31 E-value=0.63 Score=45.44 Aligned_cols=84 Identities=18% Similarity=0.194 Sum_probs=53.9
Q ss_pred EcChhhHHHHHHHhhC----CCEEEEEeCCCC---chh--hhhcCCcccChHhhhc--cCCEEEEecCCCcccccccCHH
Q psy13054 963 GLGNIGLETAKLLKAF----KVSKILYTSRRV---KEE--GTALGAQLVPLDTLCA--ESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 963 G~G~IG~~vA~~l~af----G~~Vi~~d~~~~---~~~--~~~~g~~~~~l~ell~--~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
|+|.||+.+++.++.. ++++.++-.+.. ... .........++++++. ..|+|+=|.+..+-+ .-
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~-----~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVA-----EY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHH-----HH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHH-----HH
Confidence 8999999999999765 677776644441 111 1112233458999998 999999985543222 33
Q ss_pred HHccCCCCcEEEEcCCCccc
Q psy13054 1032 QFSLMKPTAILVNTSRGGLL 1051 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lV 1051 (1128)
..+.++.|.-+|-.+-+.+.
T Consensus 76 ~~~~L~~G~~VVt~nk~ala 95 (117)
T PF03447_consen 76 YEKALERGKHVVTANKGALA 95 (117)
T ss_dssp HHHHHHTTCEEEES-HHHHH
T ss_pred HHHHHHCCCeEEEECHHHhh
Confidence 45667789999999888888
No 429
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=87.25 E-value=1.6 Score=51.61 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=39.8
Q ss_pred cCCCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCc---cccCchhhh
Q psy13054 696 IMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV---KEEGQLFSL 744 (1128)
Q Consensus 696 ~~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~---~~~~~~~~~ 744 (1128)
+.+++|+||.|=|+||+|+..|+.+...|.++++.+...- .+++-+..+
T Consensus 202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~ 253 (411)
T COG0334 202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEA 253 (411)
T ss_pred CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHH
Confidence 3448999999999999999999999988999999987654 333444433
No 430
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=87.21 E-value=7.3 Score=45.62 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=45.8
Q ss_pred ccCCCeEEEEEcC---hhhHHHHHHHh-hCCCEEEEEeCCCCc--hh----hhhcCCc--c-cChHhhhccCCEEEEe
Q psy13054 953 GLKGATVGIVGLG---NIGLETAKLLK-AFKVSKILYTSRRVK--EE----GTALGAQ--L-VPLDTLCAESDFIFVT 1017 (1128)
Q Consensus 953 ~L~gktvGIIG~G---~IG~~vA~~l~-afG~~Vi~~d~~~~~--~~----~~~~g~~--~-~~l~ell~~sDvV~l~ 1017 (1128)
.+.|++|++||-+ ++....+..+. -+|+++.+..|..-. .. ..+.|.. . .+++|.++.+|||..-
T Consensus 156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 233 (338)
T PRK08192 156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT 233 (338)
T ss_pred CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence 3789999999995 67777777655 449999888765422 11 1233433 2 4899999999999973
No 431
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.19 E-value=1 Score=54.87 Aligned_cols=110 Identities=22% Similarity=0.308 Sum_probs=71.5
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCch-----h-hhhcCCccc--ChHhhhccCCEEEEecCCCccc
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE-----E-GTALGAQLV--PLDTLCAESDFIFVTCALTKDT 1024 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~-----~-~~~~g~~~~--~l~ell~~sDvV~l~lPlt~~T 1024 (1128)
.+.++++.|||.|.+|.++|+.|+..|.+|.++|...... . ..+.|++.. .-.+....+|+|++..--.+.+
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~~~ 92 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRPDA 92 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCCCC
Confidence 5678999999999999999999999999999998654211 1 234465543 1112456799998776333322
Q ss_pred c--------c--ccCHHHH--ccCCC----CcEEEEcCCCcccCHHHHHHHHhc
Q psy13054 1025 E--------Q--LIGRKQF--SLMKP----TAILVNTSRGGLLDQEALVEFLKD 1062 (1128)
Q Consensus 1025 ~--------~--li~~~~l--~~mk~----ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128)
. + +++.-.+ ..+.+ ..+-|-=+.|+.-...-|...|+.
T Consensus 93 ~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~ 146 (480)
T PRK01438 93 PLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA 146 (480)
T ss_pred HHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 1 1 3333232 33422 246666688888777777777765
No 432
>PRK06545 prephenate dehydrogenase; Validated
Probab=87.18 E-value=0.56 Score=55.17 Aligned_cols=33 Identities=36% Similarity=0.280 Sum_probs=29.2
Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCCC
Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128)
Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128)
++|||||+|.||+.+|+.++..|.++..|+..+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~ 33 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDP 33 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 579999999999999999999998888887543
No 433
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=87.11 E-value=1.2 Score=55.68 Aligned_cols=130 Identities=15% Similarity=0.256 Sum_probs=0.0
Q ss_pred hCCcEEEEcC-CCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCccc--ccCCCeEEEEEcChhhHHHH
Q psy13054 896 ARGIRVGSVG-HISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIM--GLKGATVGIVGLGNIGLETA 972 (1128)
Q Consensus 896 ~~GI~V~n~p-~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~--~L~gktvGIIG~G~IG~~vA 972 (1128)
+.|-++.+-. ......+||.++-+=|-+.| |+ .-+... .|.+.+|.|||.|.+|..+|
T Consensus 294 Kl~pr~~dL~~~mdP~~la~~avdlnlkLmk-------------WR------llP~l~~ekL~~~kVLIvGaGGLGs~VA 354 (664)
T TIGR01381 294 KLQPISVDLSKEFDPKRLAERSVDLNLKLMK-------------WR------LHPDLQLERYSQLKVLLLGAGTLGCNVA 354 (664)
T ss_pred CcCceEechhhhcCHHHHHHHHHHHHHHHHh-------------hh------cCChhhHHHHhcCeEEEECCcHHHHHHH
Q ss_pred HHHhhCCC-EEEEEeCCCCchh--hhhcCCcccCh---------------------------------------------
Q psy13054 973 KLLKAFKV-SKILYTSRRVKEE--GTALGAQLVPL--------------------------------------------- 1004 (1128)
Q Consensus 973 ~~l~afG~-~Vi~~d~~~~~~~--~~~~g~~~~~l--------------------------------------------- 1004 (1128)
+.|.+.|. ++.++|...-... .++.-++..+.
T Consensus 355 ~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~ 434 (664)
T TIGR01381 355 RCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPE 434 (664)
T ss_pred HHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhh
Q ss_pred --------HhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCC
Q psy13054 1005 --------DTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRG 1048 (1128)
Q Consensus 1005 --------~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG 1048 (1128)
.++++++|+|+.++- +-++|.+++ ....+.+..+||.+-|
T Consensus 435 ~~~d~~~l~~Li~~~DvV~d~tD-n~esR~L~n---~~c~~~~kplI~aAlG 482 (664)
T TIGR01381 435 LEKDIARLEQLIKDHDVVFLLLD-SREARWLPT---VLCSRHKKIAISAALG 482 (664)
T ss_pred ccccHHHHHHHHhhCCEEEECCC-CHHHHHHHH---HHHHHhCCCEEEEEec
No 434
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=87.11 E-value=4.9 Score=51.60 Aligned_cols=159 Identities=14% Similarity=0.120 Sum_probs=103.8
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHh
Q psy13054 897 RGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLK 976 (1128)
Q Consensus 897 ~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~ 976 (1128)
.+|+|.|.- .+ -+|=-+++-+++.+|-. ...+...++.|.|.|.-|-.+|+.|.
T Consensus 152 ~~ip~f~DD-~~--GTa~v~lA~l~na~~~~-----------------------~~~~~~~~iv~~GaGaag~~~a~~l~ 205 (752)
T PRK07232 152 MDIPVFHDD-QH--GTAIISAAALLNALELV-----------------------GKKIEDVKIVVSGAGAAAIACLNLLV 205 (752)
T ss_pred cCCCeeccc-cc--hHHHHHHHHHHHHHHHh-----------------------CCChhhcEEEEECccHHHHHHHHHHH
Confidence 379999983 32 34445677777776521 12367789999999999999999999
Q ss_pred hCCC---EEEEEeCCC----Cc----hhhh-hc--CCcccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEE
Q psy13054 977 AFKV---SKILYTSRR----VK----EEGT-AL--GAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL 1042 (1128)
Q Consensus 977 afG~---~Vi~~d~~~----~~----~~~~-~~--g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~l 1042 (1128)
..|. +++++|++. .+ ...+ .+ .-...+|.|+++.+|+++=. . +-|+|+++.++.|.+..++
T Consensus 206 ~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~-s----~~g~~~~~~v~~M~~~pii 280 (752)
T PRK07232 206 ALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGL-S----AAGVLTPEMVKSMADNPII 280 (752)
T ss_pred HcCCCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccCCEE
Confidence 9998 677777542 11 1111 11 11224899999999988842 2 2489999999999999999
Q ss_pred EEcCCCccc-CHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCC
Q psy13054 1043 VNTSRGGLL-DQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTS 1097 (1128)
Q Consensus 1043 IN~aRG~lV-de~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHia 1097 (1128)
.=.|....- +.+..+++ ..|.|.+.|- .-.| =+.-|+++-|=++
T Consensus 281 falsNP~~E~~p~~a~~~-~~~~i~atGr-----s~~p-----nQ~NN~~~FPgi~ 325 (752)
T PRK07232 281 FALANPDPEITPEEAKAV-RPDAIIATGR-----SDYP-----NQVNNVLCFPYIF 325 (752)
T ss_pred EecCCCCccCCHHHHHHh-cCCEEEEECC-----cCCC-----Ccccceeecchhh
Confidence 999988863 23333332 2234555441 1111 1345777777543
No 435
>PRK04148 hypothetical protein; Provisional
Probab=86.94 E-value=1.5 Score=44.45 Aligned_cols=64 Identities=19% Similarity=0.216 Sum_probs=47.6
Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc--C----hHhhhccCCEEEEecC
Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV--P----LDTLCAESDFIFVTCA 1019 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~--~----l~ell~~sDvV~l~lP 1019 (1128)
.++++..||+| -|..+|..|...|.+|++.|.+....+ +++.+...+ + --++.+.+|+|-..-|
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp 86 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence 56889999999 999999999999999999997766543 333443321 2 2356777887776666
No 436
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.92 E-value=2.1 Score=51.56 Aligned_cols=109 Identities=18% Similarity=0.201 Sum_probs=70.6
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcCCccc---ChHhhhccCCEEEEecCCCccccc-
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALGAQLV---PLDTLCAESDFIFVTCALTKDTEQ- 1026 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~---~l~ell~~sDvV~l~lPlt~~T~~- 1026 (1128)
++.++++.|+|+|..|...++.|+..|.+|.++|....... ....|+... .-.+.++..|+|+ +-|.-+...-
T Consensus 3 ~~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv-~spgi~~~~~~ 81 (438)
T PRK03806 3 DYQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIV-ASPGIALAHPS 81 (438)
T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEE-ECCCCCCCCHH
Confidence 35688999999999999999999999999999997654321 112254432 1234567788655 4554443222
Q ss_pred ----------ccCH-HHHcc-CCCCcEEEEcCCCcccCHHHHHHHHhc
Q psy13054 1027 ----------LIGR-KQFSL-MKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128)
Q Consensus 1027 ----------li~~-~~l~~-mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128)
++.. +.+.. ++...+-|-=+.|+.-...-|...|+.
T Consensus 82 ~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 82 LSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred HHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 2232 33333 333455566688888877777777875
No 437
>PRK12862 malic enzyme; Reviewed
Probab=86.64 E-value=6.3 Score=50.93 Aligned_cols=179 Identities=12% Similarity=0.089 Sum_probs=115.5
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhh
Q psy13054 898 GIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKA 977 (1128)
Q Consensus 898 GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~a 977 (1128)
+|+|.|.- .+ -+|=.+++-+++.+|-. ...+...+|.|.|.|.-|..+|+.+..
T Consensus 161 ~ip~f~DD-~~--GTa~v~la~l~~a~~~~-----------------------~~~~~~~~iv~~GaGaag~~~a~~l~~ 214 (763)
T PRK12862 161 KIPVFHDD-QH--GTAIIVAAALLNGLKLV-----------------------GKDIEDVKLVASGAGAAALACLDLLVS 214 (763)
T ss_pred CCceEecC-cc--cHHHHHHHHHHHHHHHh-----------------------CCChhhcEEEEEChhHHHHHHHHHHHH
Confidence 69999983 32 34445677777766521 124678899999999999999999999
Q ss_pred CCC---EEEEEeCCC-------C--ch---h-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcE
Q psy13054 978 FKV---SKILYTSRR-------V--KE---E-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAI 1041 (1128)
Q Consensus 978 fG~---~Vi~~d~~~-------~--~~---~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~ 1041 (1128)
.|. +++.+|+.. . .. . +... ...+|.|+++.+|+++=.- +-++|+++.++.|.+..+
T Consensus 215 ~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~--~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~v~~M~~~pi 287 (763)
T PRK12862 215 LGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKT--DARTLAEVIEGADVFLGLS-----AAGVLKPEMVKKMAPRPL 287 (763)
T ss_pred cCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhc--ccCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCCE
Confidence 999 677887442 1 11 1 1111 2348999999999988422 148999999999999999
Q ss_pred EEEcCCCccc-CHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCC-----CcHHHHHHHHHHHHHHH
Q psy13054 1042 LVNTSRGGLL-DQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSS-----ATKAVRDEKSSTSAENI 1115 (1128)
Q Consensus 1042 lIN~aRG~lV-de~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag-----~t~e~~~~~~~~~~~nl 1115 (1128)
+.=.|....- ..+..+++ ..|.|.+.| ....| =+.-|+++-|=++- ......++|...+++-|
T Consensus 288 ifalsNP~~E~~p~~a~~~-~~~~i~atG-----rs~~p-----~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~al 356 (763)
T PRK12862 288 IFALANPTPEILPEEARAV-RPDAIIATG-----RSDYP-----NQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAI 356 (763)
T ss_pred EEeCCCCcccCCHHHHHHh-cCCEEEEEC-----CcCCC-----CcccceeeccchhhhHHhcCCeeCCHHHHHHHHHHH
Confidence 9999988752 22333333 223455544 11112 24568888886543 22223345555565666
Q ss_pred HHHHc
Q psy13054 1116 IRGYK 1120 (1128)
Q Consensus 1116 ~~~l~ 1120 (1128)
..+..
T Consensus 357 a~~~~ 361 (763)
T PRK12862 357 AELAR 361 (763)
T ss_pred Hhccc
Confidence 55443
No 438
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=86.60 E-value=0.46 Score=54.31 Aligned_cols=109 Identities=14% Similarity=0.063 Sum_probs=67.4
Q ss_pred eeCCCCCCCCccccccCCccccceeeccccccc-ccccccCCcc-cCHHHHhhcCCEEEEecCCCcccccccCH--HHHh
Q psy13054 269 FLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFER-SNGTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGR--KQFS 344 (1128)
Q Consensus 269 ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~-~~~~~~g~~~-vsLdeLl~~SDiVslh~PLT~~T~~lIn~--~~l~ 344 (1128)
++|+|.+|..+++.....+ ..+..+++.++ +...+.|+.. .+..|+.++||+|++++|-.+..+..+.. ..++
T Consensus 5 ~IGlG~MG~~ma~~L~~~G---~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~ 81 (292)
T PRK15059 5 FIGLGIMGTPMAINLARAG---HQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTK 81 (292)
T ss_pred EEccCHHHHHHHHHHHHCC---CeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhc
Confidence 5677777766655321111 12222332211 1112335543 37889999999999999977776665532 2467
Q ss_pred cCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEec
Q psy13054 345 LMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDV 382 (1128)
Q Consensus 345 ~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDV 382 (1128)
.+++|.++|+++=..--....+.+.+++..+ .-+|.
T Consensus 82 ~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~--~~vda 117 (292)
T PRK15059 82 ASLKGKTIVDMSSISPIETKRFARQVNELGG--DYLDA 117 (292)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHHcCC--CEEEe
Confidence 7899999999977666666678888877543 24553
No 439
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.57 E-value=0.88 Score=48.03 Aligned_cols=32 Identities=34% Similarity=0.375 Sum_probs=28.2
Q ss_pred eEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCC
Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKV-SKILYTSRR 989 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~ 989 (1128)
+|+|||+|.+|..+++.|...|. ++.++|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999998888 488888765
No 440
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=86.45 E-value=0.87 Score=45.91 Aligned_cols=37 Identities=30% Similarity=0.406 Sum_probs=31.5
Q ss_pred CCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCC
Q psy13054 698 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128)
Q Consensus 698 ~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128)
+++||++.|||.|.+|++++..+...|++-|..-+|.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 5899999999999999999999999999844444443
No 441
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.02 E-value=1.5 Score=52.95 Aligned_cols=106 Identities=20% Similarity=0.167 Sum_probs=69.2
Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh---hhh--cCCccc---ChHhhhccCCEEEEecCCCcccc--
Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE---GTA--LGAQLV---PLDTLCAESDFIFVTCALTKDTE-- 1025 (1128)
Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~---~~~--~g~~~~---~l~ell~~sDvV~l~lPlt~~T~-- 1025 (1128)
+-+++|||+|.+|..+|+.|+..|.+|.++|....... ..+ .|+... .-.+.+.++|+|+.. |.-+.+.
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~s-p~i~~~~p~ 84 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIIS-PGLALDTPA 84 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEEC-CCCCCCCHH
Confidence 45799999999999999999999999999997654321 222 255442 123456789988753 3333221
Q ss_pred ---------cccCHH-HH-ccCCCCcEEEEcCCCcccCHHHHHHHHhc
Q psy13054 1026 ---------QLIGRK-QF-SLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128)
Q Consensus 1026 ---------~li~~~-~l-~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128)
.++++- .+ ..++...+-|-=+.|+.-...-+...|+.
T Consensus 85 ~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 132 (448)
T PRK03803 85 LRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA 132 (448)
T ss_pred HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 234332 33 23344566677788888877777777875
No 442
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=86.00 E-value=2.7 Score=51.00 Aligned_cols=108 Identities=14% Similarity=0.135 Sum_probs=72.6
Q ss_pred cCCCeEEEEEc----ChhhHHHHHHHhhCCC--EEEEEeCCCCchhhhhcCCcc-cChHhhhccCCEEEEecCCCccccc
Q psy13054 954 LKGATVGIVGL----GNIGLETAKLLKAFKV--SKILYTSRRVKEEGTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQ 1026 (1128)
Q Consensus 954 L~gktvGIIG~----G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~~~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~ 1026 (1128)
++-++|.|||. |++|..+.+.++..|+ +|+.++|....- .|+.. .+++++-..-|.+++++| .+.+..
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i----~G~~~~~sl~~lp~~~Dlavi~vp-~~~~~~ 79 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI----LGVKAYPSVLEIPDPVDLAVIVVP-AKYVPQ 79 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc----CCccccCCHHHCCCCCCEEEEecC-HHHHHH
Confidence 45688999999 8899999999998876 677777654321 35543 489999888999999999 344444
Q ss_pred ccCHHHHccCCCCcEEE-EcCCCcc-----cCHHHHHHHHhcCCceEE
Q psy13054 1027 LIGRKQFSLMKPTAILV-NTSRGGL-----LDQEALVEFLKDKKIGGA 1068 (1128)
Q Consensus 1027 li~~~~l~~mk~ga~lI-N~aRG~l-----Vde~aL~~aL~~g~i~ga 1068 (1128)
++. .+...+-.+++| .-+-++. -.++.|.+..+++.+.-.
T Consensus 80 ~l~--e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl 125 (447)
T TIGR02717 80 VVE--ECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL 125 (447)
T ss_pred HHH--HHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE
Confidence 553 233344444544 3333332 235778888877766543
No 443
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=85.98 E-value=0.6 Score=46.87 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=31.0
Q ss_pred CCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCccc
Q psy13054 701 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 737 (1128)
Q Consensus 701 gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~~~ 737 (1128)
-.+|||||.|++|..+++.++.-|..|..+.+|....
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~s 46 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPAS 46 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-H
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccc
Confidence 4689999999999999999999999999998865433
No 444
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=85.89 E-value=1.6 Score=49.26 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=42.9
Q ss_pred eEEEEE-cChhhHHHHHHHhh-CCCEEEEEeCCCCc-h---hh-h-----hcCCcc-cChHhhhccCCEEEEecC
Q psy13054 958 TVGIVG-LGNIGLETAKLLKA-FKVSKILYTSRRVK-E---EG-T-----ALGAQL-VPLDTLCAESDFIFVTCA 1019 (1128)
Q Consensus 958 tvGIIG-~G~IG~~vA~~l~a-fG~~Vi~~d~~~~~-~---~~-~-----~~g~~~-~~l~ell~~sDvV~l~lP 1019 (1128)
+|+|+| +|+||+.+++.+.. -++++++.-++... . .. . ..++.. .+++++...+|+|+.+.|
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~ 77 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT 77 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC
Confidence 799999 69999999999874 58888775443211 1 11 1 123433 478888667999999886
No 445
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=85.75 E-value=1.1 Score=53.88 Aligned_cols=36 Identities=28% Similarity=0.309 Sum_probs=31.6
Q ss_pred CCCCEEEEEecChhhHHHHHHHhhCCC-eEEEEcCCC
Q psy13054 699 LKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRR 734 (1128)
Q Consensus 699 l~gktvGIiG~G~IG~~va~r~~afg~-~vi~y~~~~ 734 (1128)
+.|++++|||.|.||+.+++.+...|. +++++++..
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~ 216 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL 216 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 678999999999999999999999998 677776643
No 446
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.67 E-value=0.87 Score=51.84 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=30.5
Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCCC
Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128)
Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128)
++|+|||.|.+|..+|..+...|.+|++||...
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 689999999999999999999999999999743
No 447
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=85.37 E-value=1.3 Score=50.31 Aligned_cols=64 Identities=14% Similarity=0.195 Sum_probs=45.2
Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCE-EEEEeCCCCchh--hhhcCCcccChHhh-hccCCEEEEecCCC
Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVS-KILYTSRRVKEE--GTALGAQLVPLDTL-CAESDFIFVTCALT 1021 (1128)
Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~-Vi~~d~~~~~~~--~~~~g~~~~~l~el-l~~sDvV~l~lPlt 1021 (1128)
++++.|+|.|..+++++..|...|++ |.++++...+.+ +...+.... +++ ...+|+|+++.|..
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~--~~~~~~~~dlvINaTp~G 189 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWR--PDLGGIEADILVNVTPIG 189 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcch--hhcccccCCEEEECCccc
Confidence 46899999999999999999999984 888887665544 222222211 111 24589999998853
No 448
>PRK12861 malic enzyme; Reviewed
Probab=85.33 E-value=3.4 Score=52.99 Aligned_cols=121 Identities=12% Similarity=0.028 Sum_probs=88.4
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhh
Q psy13054 898 GIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKA 977 (1128)
Q Consensus 898 GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~a 977 (1128)
.|+|.|.- .+ -+|=.+++-+++.+|-. ...+...+|.|.|.|.-|..+++.+..
T Consensus 157 ~ipvf~DD-~q--GTa~v~lA~llnal~~~-----------------------gk~l~d~~iv~~GAGaAg~~ia~~l~~ 210 (764)
T PRK12861 157 KIPVFHDD-QH--GTAITVSAAFINGLKVV-----------------------GKSIKEVKVVTSGAGAAALACLDLLVD 210 (764)
T ss_pred CCCeeccc-cc--hHHHHHHHHHHHHHHHh-----------------------CCChhHcEEEEECHhHHHHHHHHHHHH
Confidence 79999983 32 34445677777776621 124677899999999999999999999
Q ss_pred CCC---EEEEEeCCC-------C--ch---hhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEE
Q psy13054 978 FKV---SKILYTSRR-------V--KE---EGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL 1042 (1128)
Q Consensus 978 fG~---~Vi~~d~~~-------~--~~---~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~l 1042 (1128)
.|. +++++|+.. . .+ ..... ....+|.|+++.+|+++= +. +-|+|+++.++.|.+.+++
T Consensus 211 ~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~-~~~~~L~eai~~advliG-~S----~~g~ft~e~v~~Ma~~PII 284 (764)
T PRK12861 211 LGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQE-TDARTLAEVIGGADVFLG-LS----AGGVLKAEMLKAMAARPLI 284 (764)
T ss_pred cCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhh-cCCCCHHHHHhcCCEEEE-cC----CCCCCCHHHHHHhccCCEE
Confidence 998 678777432 1 11 11111 123489999999998873 22 2489999999999999999
Q ss_pred EEcCCCcc
Q psy13054 1043 VNTSRGGL 1050 (1128)
Q Consensus 1043 IN~aRG~l 1050 (1128)
.=.|....
T Consensus 285 FaLsNPtp 292 (764)
T PRK12861 285 LALANPTP 292 (764)
T ss_pred EECCCCCc
Confidence 99988875
No 449
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=85.27 E-value=1.7 Score=48.39 Aligned_cols=98 Identities=24% Similarity=0.290 Sum_probs=68.1
Q ss_pred cccCCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh-------hhhcCCc-ccChHhhhccCCEEEEecCCCc
Q psy13054 952 MGLKGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE-------GTALGAQ-LVPLDTLCAESDFIFVTCALTK 1022 (1128)
Q Consensus 952 ~~L~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-------~~~~g~~-~~~l~ell~~sDvV~l~lPlt~ 1022 (1128)
.++...|++|+|+ |.||..+|+.|.+-+++....-+...... ..+.+.. ..|++..+.+.|+++-.....+
T Consensus 163 idlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~~~ 242 (351)
T COG5322 163 IDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASMPK 242 (351)
T ss_pred cCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeecCC
Confidence 3688899999999 99999999999999887666542221111 1122332 2478887778887775544332
Q ss_pred ccccccCHHHHccCCCCcEEEEcCCCcccCHH
Q psy13054 1023 DTEQLIGRKQFSLMKPTAILVNTSRGGLLDQE 1054 (1128)
Q Consensus 1023 ~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~ 1054 (1128)
-..|+.. .+|||+++|+-++..=||+.
T Consensus 243 --g~~I~pq---~lkpg~~ivD~g~P~dvd~~ 269 (351)
T COG5322 243 --GVEIFPQ---HLKPGCLIVDGGYPKDVDTS 269 (351)
T ss_pred --Cceechh---hccCCeEEEcCCcCcccccc
Confidence 2456654 46899999999999887765
No 450
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=85.24 E-value=0.97 Score=46.48 Aligned_cols=87 Identities=14% Similarity=0.104 Sum_probs=54.9
Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCH---
Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGR--- 1030 (1128)
Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~--- 1030 (1128)
..|++|++||+= +++++.++.-+.++.++|..++.......++.....++++++||+|++.-. | ++|.
T Consensus 9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGs----T--lvN~Ti~ 79 (147)
T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGS----T--LVNGTID 79 (147)
T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECH----H--CCTTTHH
T ss_pred cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEee----e--eecCCHH
Confidence 478999999972 237888888899999999776543322223334467889999999997544 1 2332
Q ss_pred HHHccCCCCcEEEEcCCCc
Q psy13054 1031 KQFSLMKPTAILVNTSRGG 1049 (1128)
Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~ 1049 (1128)
+.|+..++++.+|=+|-..
T Consensus 80 ~iL~~~~~~~~vil~GpS~ 98 (147)
T PF04016_consen 80 DILELARNAREVILYGPSA 98 (147)
T ss_dssp HHHHHTTTSSEEEEESCCG
T ss_pred HHHHhCccCCeEEEEecCc
Confidence 4666666666666554433
No 451
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=85.17 E-value=1.5 Score=52.93 Aligned_cols=90 Identities=20% Similarity=0.130 Sum_probs=59.0
Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhc--CCcc-----cC---h-HhhhccCCEEEEecCCC
Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTAL--GAQL-----VP---L-DTLCAESDFIFVTCALT 1021 (1128)
Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~--g~~~-----~~---l-~ell~~sDvV~l~lPlt 1021 (1128)
+..+++.|+|+|.+|+.+++.|...|.+|+++|....... ..+. ++.. .+ | +.-+.++|.|+++++..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 4568899999999999999999999999999987665433 2221 2221 11 2 22457899999888865
Q ss_pred cccccccCHHHHccCCCCcEEEEc
Q psy13054 1022 KDTEQLIGRKQFSLMKPTAILVNT 1045 (1128)
Q Consensus 1022 ~~T~~li~~~~l~~mk~ga~lIN~ 1045 (1128)
.. +++-......+.+..+++-+
T Consensus 309 ~~--n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 309 EA--NILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred HH--HHHHHHHHHHhCCCeEEEEE
Confidence 33 33333344555555555543
No 452
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=84.89 E-value=2.2 Score=48.79 Aligned_cols=85 Identities=18% Similarity=0.126 Sum_probs=51.0
Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEE-EeCCCCchh-hhhcCCcccChHh-hhccCCEEEEecCCCcccccccCHH
Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKIL-YTSRRVKEE-GTALGAQLVPLDT-LCAESDFIFVTCALTKDTEQLIGRK 1031 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~-~d~~~~~~~-~~~~g~~~~~l~e-ll~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128)
.|+++.|+|.|.||...++.++.+|+++++ .+....+.. +.... ..+.++ .-...|+|+-+.... .+ + ..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~--~i~~~~~~~~g~Dvvid~~G~~-~~---~-~~ 216 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE--VLDPEKDPRRDYRAIYDASGDP-SL---I-DT 216 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc--ccChhhccCCCCCEEEECCCCH-HH---H-HH
Confidence 467899999999999999999999998554 443322222 11111 111111 112467777655521 11 1 24
Q ss_pred HHccCCCCcEEEEcC
Q psy13054 1032 QFSLMKPTAILVNTS 1046 (1128)
Q Consensus 1032 ~l~~mk~ga~lIN~a 1046 (1128)
.++.|+++..++.+|
T Consensus 217 ~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 217 LVRRLAKGGEIVLAG 231 (308)
T ss_pred HHHhhhcCcEEEEEe
Confidence 567777777777765
No 453
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=84.86 E-value=1.7 Score=45.73 Aligned_cols=36 Identities=33% Similarity=0.393 Sum_probs=31.9
Q ss_pred CCCCCEEEEEecChh-hHHHHHHHhhCCCeEEEEcCC
Q psy13054 698 GLKGATVGIVGLGNI-GLETAKLLKAFKVSKILYTSR 733 (1128)
Q Consensus 698 ~l~gktvGIiG~G~I-G~~va~r~~afg~~vi~y~~~ 733 (1128)
++.||++-|||.|.+ |+.+|+.|...|.++...+++
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 589999999999985 888999999999987777764
No 454
>PRK07411 hypothetical protein; Validated
Probab=84.83 E-value=0.83 Score=54.42 Aligned_cols=85 Identities=22% Similarity=0.150 Sum_probs=54.8
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--h-------hhcC-----------------Cc-----
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--G-------TALG-----------------AQ----- 1000 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~-------~~~g-----------------~~----- 1000 (1128)
.|...+|+|||+|.+|..+|+.|...|. ++.++|...-... . .+.| ++
T Consensus 35 ~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~ 114 (390)
T PRK07411 35 RLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYE 114 (390)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEe
Confidence 6899999999999999999999988887 5556665432111 0 0001 10
Q ss_pred -c---cChHhhhccCCEEEEecCCCcccccccCHHHHccCCC
Q psy13054 1001 -L---VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKP 1038 (1128)
Q Consensus 1001 -~---~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ 1038 (1128)
. ....++++++|+|+.|+ .+.+++.++|....+.-+|
T Consensus 115 ~~~~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~~~p 155 (390)
T PRK07411 115 TRLSSENALDILAPYDVVVDGT-DNFPTRYLVNDACVLLNKP 155 (390)
T ss_pred cccCHHhHHHHHhCCCEEEECC-CCHHHHHHHHHHHHHcCCC
Confidence 1 12346778888777654 4667777777655544333
No 455
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=84.74 E-value=2.5 Score=50.50 Aligned_cols=31 Identities=19% Similarity=0.399 Sum_probs=27.5
Q ss_pred CeEEEEEcChhhHHHHHHHhh-CCCEEEEEeC
Q psy13054 957 ATVGIVGLGNIGLETAKLLKA-FKVSKILYTS 987 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~a-fG~~Vi~~d~ 987 (1128)
.+|||.|||+|||.++|.+.+ ++++|++.++
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINd 117 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVND 117 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecC
Confidence 489999999999999999875 8999988665
No 456
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.74 E-value=0.95 Score=51.43 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=29.9
Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCC
Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128)
Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128)
++|+|||.|.+|..+|..+..-|.+|++||..
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCC
Confidence 58999999999999999999889999999874
No 457
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=84.65 E-value=2.4 Score=50.07 Aligned_cols=87 Identities=29% Similarity=0.401 Sum_probs=52.7
Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCc-hh-hhhcCCccc----C---hHhhhccCCEEEEecCCCcccc
Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK-EE-GTALGAQLV----P---LDTLCAESDFIFVTCALTKDTE 1025 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~-~~-~~~~g~~~~----~---l~ell~~sDvV~l~lPlt~~T~ 1025 (1128)
.|++|.|.|.|.+|...++.++++|++|++.++..++ .+ +++.|+..+ + +.++....|+|+-+.... .+
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~-~~- 255 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAE-HA- 255 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcH-HH-
Confidence 5889999999999999999999999998888765443 22 344554321 1 112223356666554321 11
Q ss_pred cccCHHHHccCCCCcEEEEcC
Q psy13054 1026 QLIGRKQFSLMKPTAILVNTS 1046 (1128)
Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~a 1046 (1128)
+ ...++.++++..++.++
T Consensus 256 --~-~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 256 --L-LPLFSLLKVSGKLVALG 273 (375)
T ss_pred --H-HHHHHhhcCCCEEEEEc
Confidence 1 12344455555555554
No 458
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=84.50 E-value=2.6 Score=48.92 Aligned_cols=90 Identities=18% Similarity=0.270 Sum_probs=58.6
Q ss_pred CCCeEEEEEcChhhHHHHHHHhh-CC-CEEEEEeCCCCchh-hhhcCCcccChHhhhc--cCCEEEEecCCCcccccccC
Q psy13054 955 KGATVGIVGLGNIGLETAKLLKA-FK-VSKILYTSRRVKEE-GTALGAQLVPLDTLCA--ESDFIFVTCALTKDTEQLIG 1029 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~a-fG-~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~--~sDvV~l~lPlt~~T~~li~ 1029 (1128)
.|.+|.|+|.|.||...++.++. +| .+|++.++...+.+ ++..+... ..+++.. ..|+|+-+.... .+...+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~-~~~~~~~~~g~d~viD~~G~~-~~~~~~- 239 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY-LIDDIPEDLAVDHAFECVGGR-GSQSAI- 239 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee-ehhhhhhccCCcEEEECCCCC-ccHHHH-
Confidence 47899999999999999999986 54 67888887655544 33333322 1222222 368888777631 111122
Q ss_pred HHHHccCCCCcEEEEcCC
Q psy13054 1030 RKQFSLMKPTAILVNTSR 1047 (1128)
Q Consensus 1030 ~~~l~~mk~ga~lIN~aR 1047 (1128)
...++.++++..+|.++-
T Consensus 240 ~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 240 NQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred HHHHHhCcCCcEEEEEee
Confidence 246778899999888763
No 459
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=84.37 E-value=1 Score=51.70 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=30.4
Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCCC
Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128)
Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128)
++|||||.|.+|..+|..+..-|.+|++||+..
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 479999999999999999999999999999853
No 460
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=84.36 E-value=2.5 Score=48.61 Aligned_cols=86 Identities=19% Similarity=0.218 Sum_probs=53.8
Q ss_pred CCeEEEEEcChhhHHHHHHHh-hCCCEEEEE-eCCCCch--h-hhhcCCcc--cChHhhhc-----cCCEEEEecCCCcc
Q psy13054 956 GATVGIVGLGNIGLETAKLLK-AFKVSKILY-TSRRVKE--E-GTALGAQL--VPLDTLCA-----ESDFIFVTCALTKD 1023 (1128)
Q Consensus 956 gktvGIIG~G~IG~~vA~~l~-afG~~Vi~~-d~~~~~~--~-~~~~g~~~--~~l~ell~-----~sDvV~l~lPlt~~ 1023 (1128)
..++||||.|+||+..+..+. .-++++.+. |...... . +++.|+.. .++++++. +.|+|+.+.|..
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~-- 81 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG-- 81 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH--
Confidence 457999999999999666655 336676644 4333222 1 45567654 47899885 578899988843
Q ss_pred cccccCHHHHccCCCCcEEEEcC
Q psy13054 1024 TEQLIGRKQFSLMKPTAILVNTS 1046 (1128)
Q Consensus 1024 T~~li~~~~l~~mk~ga~lIN~a 1046 (1128)
.+. +-.....+.|..+|+-+
T Consensus 82 ~H~---e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 82 AHV---RHAAKLREAGIRAIDLT 101 (302)
T ss_pred HHH---HHHHHHHHcCCeEEECC
Confidence 111 11222345677777665
No 461
>PLN02688 pyrroline-5-carboxylate reductase
Probab=84.27 E-value=1 Score=50.38 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=27.0
Q ss_pred EEEEEecChhhHHHHHHHhhCCC----eEEEEcCCC
Q psy13054 703 TVGIVGLGNIGLETAKLLKAFKV----SKILYTSRR 734 (1128)
Q Consensus 703 tvGIiG~G~IG~~va~r~~afg~----~vi~y~~~~ 734 (1128)
+|||||+|++|+++++.+..-|. ++++|++|.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~ 37 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSN 37 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCC
Confidence 69999999999999999987776 788884443
No 462
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.26 E-value=1.1 Score=51.45 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=29.9
Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCC
Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128)
Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128)
++|||||.|.+|..+|..+..-|.+|++||+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 68999999999999999999999999999974
No 463
>PLN00203 glutamyl-tRNA reductase
Probab=84.23 E-value=1.2 Score=54.99 Aligned_cols=73 Identities=12% Similarity=0.160 Sum_probs=47.4
Q ss_pred CCCCCEEEEEecChhhHHHHHHHhhCCC-eEEEEcCCCccccC--c-------hh---hhHHHHHhhc----CCChhhhh
Q psy13054 698 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEEG--Q-------LF---SLVYDFCRYS----IGGVTIKR 760 (1128)
Q Consensus 698 ~l~gktvGIiG~G~IG~~va~r~~afg~-~vi~y~~~~~~~~~--~-------~~---~~~~~la~~~----pg~~~t~~ 760 (1128)
++.+++|+|||.|.+|+.+++-+...|. ++.+|++...+... . .+ .-+.+.+..+ -.|+.+..
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~p 342 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSETP 342 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCCC
Confidence 3778999999999999999999999997 57777664332211 0 00 0122223333 55666666
Q ss_pred hhhHHHHHHh
Q psy13054 761 LVKKTFILSF 770 (1128)
Q Consensus 761 l~~~~~l~~~ 770 (1128)
++.++.++.+
T Consensus 343 vI~~e~l~~~ 352 (519)
T PLN00203 343 LFLKEHVEAL 352 (519)
T ss_pred eeCHHHHHHh
Confidence 7777776665
No 464
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=84.22 E-value=1.1 Score=42.54 Aligned_cols=65 Identities=20% Similarity=0.136 Sum_probs=42.7
Q ss_pred CCeEEEEEcChhhHHHHHHH-hhCCCEE-EEEeCCCCchhhhhcCCccc-ChHhhhcc--CCEEEEecCC
Q psy13054 956 GATVGIVGLGNIGLETAKLL-KAFKVSK-ILYTSRRVKEEGTALGAQLV-PLDTLCAE--SDFIFVTCAL 1020 (1128)
Q Consensus 956 gktvGIIG~G~IG~~vA~~l-~afG~~V-i~~d~~~~~~~~~~~g~~~~-~l~ell~~--sDvV~l~lPl 1020 (1128)
..+++|+|+|+.|++++... +..|+++ .++|..+.+....-.++... +++++.+. .|+-++++|.
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~ 72 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPA 72 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-H
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCH
Confidence 35799999999999987544 3344433 45565554332222355555 78887777 9999999994
No 465
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.22 E-value=1.2 Score=54.12 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=33.3
Q ss_pred CCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCC
Q psy13054 699 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128)
Q Consensus 699 l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128)
+.+|+++|+|+|..|.++|+.|+..|.+|.++|...
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 568999999999999999999999999999999643
No 466
>PTZ00325 malate dehydrogenase; Provisional
Probab=84.19 E-value=1.9 Score=49.97 Aligned_cols=100 Identities=20% Similarity=0.235 Sum_probs=61.9
Q ss_pred cCCCeEEEEEc-ChhhHHHHHHHh--hCCCEEEEEeCCCCchhhhh---c--CCccc------ChHhhhccCCEEEEecC
Q psy13054 954 LKGATVGIVGL-GNIGLETAKLLK--AFKVSKILYTSRRVKEEGTA---L--GAQLV------PLDTLCAESDFIFVTCA 1019 (1128)
Q Consensus 954 L~gktvGIIG~-G~IG~~vA~~l~--afG~~Vi~~d~~~~~~~~~~---~--g~~~~------~l~ell~~sDvV~l~lP 1019 (1128)
+..++|+|||. |+||..+|..+. ...-+++.+|.......+.+ . ..... +..+.++.||+|++++-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence 56679999999 999999999998 45458889987322221111 0 11111 12689999999998776
Q ss_pred CCcc---cc-cccCH------H---HHccCCCCcEEEEcCCCcccCH
Q psy13054 1020 LTKD---TE-QLIGR------K---QFSLMKPTAILVNTSRGGLLDQ 1053 (1128)
Q Consensus 1020 lt~~---T~-~li~~------~---~l~~mk~ga~lIN~aRG~lVde 1053 (1128)
.... |+ .++.. + .+..-.+.++++.++-+--+-.
T Consensus 86 ~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~ 132 (321)
T PTZ00325 86 VPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTV 132 (321)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHH
Confidence 4221 11 12222 2 2333467788988877655433
No 467
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=84.14 E-value=1.6 Score=47.52 Aligned_cols=63 Identities=21% Similarity=0.211 Sum_probs=49.1
Q ss_pred EEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh---hhhcCCcc--------cChHhhhccCCEEEEecCCC
Q psy13054 959 VGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE---GTALGAQL--------VPLDTLCAESDFIFVTCALT 1021 (1128)
Q Consensus 959 vGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~---~~~~g~~~--------~~l~ell~~sDvV~l~lPlt 1021 (1128)
|.|+|. |.+|+.+++.|..-+.+|.+..+...... ....|++. .+|.+.++.+|.|++++|..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 678996 99999999999999999999876664332 23455543 24677899999999999954
No 468
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=84.04 E-value=14 Score=44.14 Aligned_cols=203 Identities=16% Similarity=0.107 Sum_probs=122.5
Q ss_pred ccEEEEccccCCc--CChhhh--------hhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCcccccc
Q psy13054 876 LKVITTFSVGYDH--LELHEI--------KARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTH 945 (1128)
Q Consensus 876 LK~I~~~~aGvd~--idl~a~--------~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~ 945 (1128)
+|.+.-.-.|++- +|...| .+..|+|.|.-=- -+|=.+++-+++.+|-
T Consensus 135 Vkal~p~FgginLedi~ap~cf~ie~~lr~~~~IPvFhDDqq---GTaiv~lA~llnalk~------------------- 192 (432)
T COG0281 135 VKALEPTFGGINLEDIDAPRCFAIEERLRYRMNIPVFHDDQQ---GTAIVTLAALLNALKL------------------- 192 (432)
T ss_pred HHHhhhcCCCcceeecccchhhHHHHHHhhcCCCCccccccc---HHHHHHHHHHHHHHHH-------------------
Confidence 3444445555543 444444 2446888887432 3444566777766552
Q ss_pred ccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCC---EEEEEeCCCC----chh-----hh-----hcCCcccChHhhh
Q psy13054 946 IIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKV---SKILYTSRRV----KEE-----GT-----ALGAQLVPLDTLC 1008 (1128)
Q Consensus 946 ~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~---~Vi~~d~~~~----~~~-----~~-----~~g~~~~~l~ell 1008 (1128)
....|...+|.+.|.|.-|-.+++.+.+.|+ +++++|+..- ++. .. +..-.+.. ++.+
T Consensus 193 ----~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~ 267 (432)
T COG0281 193 ----TGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLAL 267 (432)
T ss_pred ----hCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccc
Confidence 1224788999999999999999999999999 5777776521 100 00 00001111 5588
Q ss_pred ccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcC-CceEEEEeccCCCCCCCCCccccC
Q psy13054 1009 AESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK-KIGGAGLDVMIPEPLPADHPLVQL 1087 (1128)
Q Consensus 1009 ~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g-~i~gaaLDV~e~EPl~~~~pL~~~ 1087 (1128)
..+|+++=+ . +.|.|.++.++.|.+.+++.=+|-...--....+..-..| .|-+- .-|. .|- +.
T Consensus 268 ~~adv~iG~-S----~~G~~t~e~V~~Ma~~PiIfalaNP~pEi~Pe~a~~~~~~aaivaT------Grsd---~Pn-Qv 332 (432)
T COG0281 268 AGADVLIGV-S----GVGAFTEEMVKEMAKHPIIFALANPTPEITPEDAKEWGDGAAIVAT------GRSD---YPN-QV 332 (432)
T ss_pred cCCCEEEEc-C----CCCCcCHHHHHHhccCCEEeecCCCCccCCHHHHhhcCCCCEEEEe------CCCC---Ccc-cc
Confidence 889998732 2 1289999999999999999988877642222222222222 33222 2332 222 77
Q ss_pred CCeEECCCCCCCcH-----HHHHHHHHHHHHHHHHHHc
Q psy13054 1088 DNCVLTPHTSSATK-----AVRDEKSSTSAENIIRGYK 1120 (1128)
Q Consensus 1088 pNvilTPHiag~t~-----e~~~~~~~~~~~nl~~~l~ 1120 (1128)
-|+++-|-+.-..- ..-++|...+++-|..+..
T Consensus 333 NNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~~~ 370 (432)
T COG0281 333 NNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIADLAR 370 (432)
T ss_pred cceeEcchhhhhhHhhccccCCHHHHHHHHHHHHhhcc
Confidence 89999998764322 2335566666777766643
No 469
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.02 E-value=2.1 Score=51.26 Aligned_cols=102 Identities=19% Similarity=0.259 Sum_probs=64.2
Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhh--ccCCEEEEecCCCccc-------cccc
Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLC--AESDFIFVTCALTKDT-------EQLI 1028 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell--~~sDvV~l~lPlt~~T-------~~li 1028 (1128)
+|.|+|+|..|.++|+.|+ .|.+|.++|.........+.|+...+ ++.+ .++|+|+.. |.-+.+ +.++
T Consensus 2 ~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~~~~~gi~~~~-~~~~~~~~~d~vv~s-p~i~~~~~~~~~a~~i~ 78 (401)
T PRK03815 2 KISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESHKDEEGNLLLP-SNDFDPNKSDLEIPS-PGIPPSHPLIQKAKNLI 78 (401)
T ss_pred eEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccchhhcCCEEec-HHHcCcCCCCEEEEC-CCCCCCCHHHHHHHHHh
Confidence 5899999999999999999 99999999855332212233544422 2233 468977654 322221 2234
Q ss_pred CHHH-HccCCCCcEEEEcCCCcccCHHHHHHHHhc
Q psy13054 1029 GRKQ-FSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128)
Q Consensus 1029 ~~~~-l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128)
++-. +....+..+-|-=+.|+.-...-+...|+.
T Consensus 79 ~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~ 113 (401)
T PRK03815 79 SEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLED 113 (401)
T ss_pred hHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 3332 233223366777788988877777777875
No 470
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=83.82 E-value=1.2 Score=51.07 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=29.0
Q ss_pred CCEEEEEecChhhHHHHHHHhhCCC--eEEEEcCC
Q psy13054 701 GATVGIVGLGNIGLETAKLLKAFKV--SKILYTSR 733 (1128)
Q Consensus 701 gktvGIiG~G~IG~~va~r~~afg~--~vi~y~~~ 733 (1128)
-++|||||+|.||..+|+.++..|. +|++|++.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~ 40 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS 40 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 3789999999999999999997774 78999874
No 471
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=83.81 E-value=1.7 Score=50.47 Aligned_cols=89 Identities=24% Similarity=0.251 Sum_probs=56.1
Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc---------ChHhhhc------cCC----EE
Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV---------PLDTLCA------ESD----FI 1014 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~---------~l~ell~------~sD----vV 1014 (1128)
.|.+|.|+|.|.||...++.+++.|.+|++.+....+.. +.+.|+..+ ++.+.+. ..| +|
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v 245 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKI 245 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEE
Confidence 478999999999999999999999999888876554443 444554321 1111111 122 55
Q ss_pred EEecCCCcccccccCHHHHccCCCCcEEEEcCCC
Q psy13054 1015 FVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRG 1048 (1128)
Q Consensus 1015 ~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG 1048 (1128)
+-+.. .+.+ -...++.++++..++..+..
T Consensus 246 ~d~~g-~~~~----~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 246 FECSG-SKPG----QESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred EECCC-ChHH----HHHHHHHHhcCCeEEEECcC
Confidence 54443 2221 12346677888888887653
No 472
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=83.59 E-value=2.8 Score=47.81 Aligned_cols=65 Identities=23% Similarity=0.318 Sum_probs=43.8
Q ss_pred CeEEEEEcChhhHHHHHHHh-hCCCEEEE-EeCCCCch--h-hhhcCCcc--cChHhhhc--cCCEEEEecCCC
Q psy13054 957 ATVGIVGLGNIGLETAKLLK-AFKVSKIL-YTSRRVKE--E-GTALGAQL--VPLDTLCA--ESDFIFVTCALT 1021 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~-afG~~Vi~-~d~~~~~~--~-~~~~g~~~--~~l~ell~--~sDvV~l~lPlt 1021 (1128)
.++||||.|+||+..+..+. .-++++.. +|+..... . +++.|+.. .+.++++. +-|+|+++.|..
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~ 75 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAK 75 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcH
Confidence 36999999999998865554 33566665 44444322 2 45566643 37888885 578899999843
No 473
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=83.57 E-value=2.5 Score=48.87 Aligned_cols=92 Identities=17% Similarity=0.204 Sum_probs=58.4
Q ss_pred eEEEEEc-ChhhHHHHHHHhhCC--CEEEEEeCCCCchhhhh--cC-----Ccc-c---ChHhhhccCCEEEEecCCCc-
Q psy13054 958 TVGIVGL-GNIGLETAKLLKAFK--VSKILYTSRRVKEEGTA--LG-----AQL-V---PLDTLCAESDFIFVTCALTK- 1022 (1128)
Q Consensus 958 tvGIIG~-G~IG~~vA~~l~afG--~~Vi~~d~~~~~~~~~~--~g-----~~~-~---~l~ell~~sDvV~l~lPlt~- 1022 (1128)
+|+|||. |+||..+|-.|...+ -+++.+|.......+.+ .+ +.. . ++.+.++.||+|+++.-...
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 5899999 999999999886444 47888987652222111 11 111 1 23689999999999876421
Q ss_pred --cccc-cc--CH-------HHHccCCCCcEEEEcCCCc
Q psy13054 1023 --DTEQ-LI--GR-------KQFSLMKPTAILVNTSRGG 1049 (1128)
Q Consensus 1023 --~T~~-li--~~-------~~l~~mk~ga~lIN~aRG~ 1049 (1128)
.+|- ++ |. +.+..-.|++++|+++-.-
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPv 119 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPV 119 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCch
Confidence 1111 11 11 2345557999999997653
No 474
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.49 E-value=1.7 Score=49.63 Aligned_cols=37 Identities=27% Similarity=0.433 Sum_probs=34.7
Q ss_pred CCCCCCEEEEEecCh-hhHHHHHHHhhCCCeEEEEcCC
Q psy13054 697 MGLKGATVGIVGLGN-IGLETAKLLKAFKVSKILYTSR 733 (1128)
Q Consensus 697 ~~l~gktvGIiG~G~-IG~~va~r~~afg~~vi~y~~~ 733 (1128)
.+++||++.|||.|+ +|+-+|..|...|++|..+|++
T Consensus 154 i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~ 191 (286)
T PRK14175 154 IDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSR 191 (286)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence 468999999999999 9999999999999999999985
No 475
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=83.40 E-value=1.8 Score=47.70 Aligned_cols=90 Identities=12% Similarity=0.024 Sum_probs=57.4
Q ss_pred ccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--h-hhcCCccc--Ch-HhhhccCCEEEEecCCCccc
Q psy13054 951 IMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--G-TALGAQLV--PL-DTLCAESDFIFVTCALTKDT 1024 (1128)
Q Consensus 951 ~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~-~~~g~~~~--~l-~ell~~sDvV~l~lPlt~~T 1024 (1128)
...+.|++|.|||-|.++.+=++.|..+|++|.++.|...... . ....+++. +. ++-+..+++|+.++... +
T Consensus 20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~-~- 97 (223)
T PRK05562 20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDE-K- 97 (223)
T ss_pred EEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCH-H-
Confidence 3378899999999999999999999999999999987665432 1 11112221 11 23456777777766522 2
Q ss_pred ccccCHHHHccCCCCcEEEEc
Q psy13054 1025 EQLIGRKQFSLMKPTAILVNT 1045 (1128)
Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~ 1045 (1128)
+|+...+..+.-..++|+
T Consensus 98 ---vN~~I~~~a~~~~~lvn~ 115 (223)
T PRK05562 98 ---LNNKIRKHCDRLYKLYID 115 (223)
T ss_pred ---HHHHHHHHHHHcCCeEEE
Confidence 344444445544455554
No 476
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=83.35 E-value=1.7 Score=50.63 Aligned_cols=86 Identities=20% Similarity=0.242 Sum_probs=51.7
Q ss_pred CCeEEEEEc-ChhhHHHHHHHhhCCC---EEEEEeCCCCchh-hhhcC--CcccChH-hhhccCCEEEEecCCCcccccc
Q psy13054 956 GATVGIVGL-GNIGLETAKLLKAFKV---SKILYTSRRVKEE-GTALG--AQLVPLD-TLCAESDFIFVTCALTKDTEQL 1027 (1128)
Q Consensus 956 gktvGIIG~-G~IG~~vA~~l~afG~---~Vi~~d~~~~~~~-~~~~g--~~~~~l~-ell~~sDvV~l~lPlt~~T~~l 1027 (1128)
+++|+|+|. |.+|+++.++|..-|. ++....+...... ..-.+ ....+++ +.+..+|+|+.++|.. .+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g-~s--- 76 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGS-VS--- 76 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChH-HH---
Confidence 368999998 9999999999988554 3344433322211 11111 1222332 3457899999999844 23
Q ss_pred cCHHHHcc-CCCCcEEEEcCC
Q psy13054 1028 IGRKQFSL-MKPTAILVNTSR 1047 (1128)
Q Consensus 1028 i~~~~l~~-mk~ga~lIN~aR 1047 (1128)
++...+ ++.|+++|+.|.
T Consensus 77 --~~~~~~~~~~G~~VIDlS~ 95 (334)
T PRK14874 77 --KKYAPKAAAAGAVVIDNSS 95 (334)
T ss_pred --HHHHHHHHhCCCEEEECCc
Confidence 232222 256889998763
No 477
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=83.28 E-value=1.4 Score=47.84 Aligned_cols=36 Identities=33% Similarity=0.356 Sum_probs=30.3
Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCccc
Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 737 (1128)
Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~~~ 737 (1128)
++++|+|.|+||+.+|+|+..-|-+|+.=.++.++.
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~ 37 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKA 37 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhH
Confidence 589999999999999999999998776665655544
No 478
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=83.14 E-value=1.6 Score=52.63 Aligned_cols=76 Identities=24% Similarity=0.248 Sum_probs=52.4
Q ss_pred CCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCccc---------cCchhhh---HHHHHhhc------CCChhhhh
Q psy13054 699 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE---------EGQLFSL---VYDFCRYS------IGGVTIKR 760 (1128)
Q Consensus 699 l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~~~---------~~~~~~~---~~~la~~~------pg~~~t~~ 760 (1128)
..+|+|.|+|+|.-|.++|+.|...|.+|.++|.+...+ ++..+.. .++.-..+ ||=|.|.-
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p 84 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHP 84 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCH
Confidence 458999999999999999999999999999999654441 1222222 11112222 99999998
Q ss_pred hhhHHHHHHhcceEEe
Q psy13054 761 LVKKTFILSFGGLVVT 776 (1128)
Q Consensus 761 l~~~~~l~~~~~~~~~ 776 (1128)
+|.+.. +.+.-|++
T Consensus 85 ~v~~A~--~~gi~i~~ 98 (448)
T COG0771 85 LVEAAK--AAGIEIIG 98 (448)
T ss_pred HHHHHH--HcCCcEEe
Confidence 887653 44444544
No 479
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.13 E-value=2.1 Score=46.64 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=33.8
Q ss_pred ccCCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCc
Q psy13054 953 GLKGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVK 991 (1128)
Q Consensus 953 ~L~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~ 991 (1128)
.+.++++.|+|. |.||+.+++.|...|++|++.+++..+
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~ 41 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEA 41 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 367899999997 899999999999999999998866543
No 480
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=83.04 E-value=1.7 Score=41.75 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=32.4
Q ss_pred CCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCC
Q psy13054 698 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128)
Q Consensus 698 ~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128)
+++||++-|||.|++|.+=++.+...|.++.+|.+.-
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 5899999999999999999999999999999999864
No 481
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=82.91 E-value=16 Score=42.23 Aligned_cols=65 Identities=12% Similarity=0.130 Sum_probs=46.7
Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchh----------hhhcCCcc---cChHhhhccCCEEEEec
Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEE----------GTALGAQL---VPLDTLCAESDFIFVTC 1018 (1128)
Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~----------~~~~g~~~---~~l~ell~~sDvV~l~l 1018 (1128)
.+.|++|++||=+ ++.+..+..+..||++|.+..|..-.+. .+..|... .++ +.++.+|||..-.
T Consensus 144 ~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~ 222 (302)
T PRK14805 144 DVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDI-EAIEGHDAIYTDT 222 (302)
T ss_pred CcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCH-HHHCCCCEEEeec
Confidence 3789999999984 6678888999999999999877653321 12235442 354 5689999999733
No 482
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.88 E-value=1.4 Score=50.26 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=30.1
Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCC
Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128)
Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128)
++|+|||.|.+|..+|..+..-|.+|++||..
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 68999999999999999999999999999974
No 483
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=82.69 E-value=5.5 Score=47.89 Aligned_cols=107 Identities=17% Similarity=0.196 Sum_probs=69.4
Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-h----h--hcCCccc--ChHhhhccCCEEEEecCC---Cccc-
Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-G----T--ALGAQLV--PLDTLCAESDFIFVTCAL---TKDT- 1024 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~----~--~~g~~~~--~l~ell~~sDvV~l~lPl---t~~T- 1024 (1128)
++.|||+|.+|.++|+.|+..|.+|.++|....... . . ..|++.. .-.+.+..+|+|+..--- +|+-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp~i~~~~p~~~ 80 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSPGIPPDHPLVQ 80 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECCCCCCCCHHHH
Confidence 478999999999999999999999999996544221 1 1 2355442 124556789987754321 2221
Q ss_pred ------ccccCHHH-H-ccCCCCcEEEEcCCCcccCHHHHHHHHhcCC
Q psy13054 1025 ------EQLIGRKQ-F-SLMKPTAILVNTSRGGLLDQEALVEFLKDKK 1064 (1128)
Q Consensus 1025 ------~~li~~~~-l-~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~ 1064 (1128)
..++++-+ + ..++...+-|.=+.|+.-...-+...|+...
T Consensus 81 ~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g 128 (433)
T TIGR01087 81 AAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG 128 (433)
T ss_pred HHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 12343332 2 3334456777778999888887778887643
No 484
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=82.67 E-value=5.7 Score=45.87 Aligned_cols=110 Identities=23% Similarity=0.359 Sum_probs=65.6
Q ss_pred CeEEEEEc-ChhhHHHHHHHhhCCC--EEEEEeCCC--Cchhhh---------hcCC--cc--c-ChHhhhccCCEEEEe
Q psy13054 957 ATVGIVGL-GNIGLETAKLLKAFKV--SKILYTSRR--VKEEGT---------ALGA--QL--V-PLDTLCAESDFIFVT 1017 (1128)
Q Consensus 957 ktvGIIG~-G~IG~~vA~~l~afG~--~Vi~~d~~~--~~~~~~---------~~g~--~~--~-~l~ell~~sDvV~l~ 1017 (1128)
++|+|+|. |.+|..++..|...|. +|+.+|+.. ++.... ..+. .. . + .+.++.||+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEe
Confidence 47999998 9999999999987775 488998743 222110 0111 11 1 3 3559999999999
Q ss_pred cCCCcc---cc--------cccC--HHHHccCCCCcEEEEcCCCcccCHHHHHHH----HhcCCceEEE
Q psy13054 1018 CALTKD---TE--------QLIG--RKQFSLMKPTAILVNTSRGGLLDQEALVEF----LKDKKIGGAG 1069 (1128)
Q Consensus 1018 lPlt~~---T~--------~li~--~~~l~~mk~ga~lIN~aRG~lVde~aL~~a----L~~g~i~gaa 1069 (1128)
...... +| .++. ...+....+++++|+++ ..+|.-..+-. +...++.|.+
T Consensus 80 ag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~--npvd~~t~~~~~~~g~~~~~viG~g 146 (309)
T cd05294 80 AGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT--NPVDVMTYKALKESGFDKNRVFGLG 146 (309)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CchHHHHHHHHHhcCCCHHHEeecc
Confidence 863221 21 1110 01244555788888887 45554443322 4455666664
No 485
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=82.63 E-value=2.8 Score=49.07 Aligned_cols=109 Identities=11% Similarity=0.051 Sum_probs=66.8
Q ss_pred CeEEEEEcChhhHHHHHHHhhC--CCEEEEEeCCC-Cchh--hhhcCCc-ccChHhhhccCCEEEEecCCC-cccccccC
Q psy13054 957 ATVGIVGLGNIGLETAKLLKAF--KVSKILYTSRR-VKEE--GTALGAQ-LVPLDTLCAESDFIFVTCALT-KDTEQLIG 1029 (1128)
Q Consensus 957 ktvGIIG~G~IG~~vA~~l~af--G~~Vi~~d~~~-~~~~--~~~~g~~-~~~l~ell~~sDvV~l~lPlt-~~T~~li~ 1029 (1128)
.+|||||. .+|+.-++.++.. ++++++.-++. .+.. ++.+|+. +.+++|++...|++++++|.+ |...|.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~-- 80 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGS-- 80 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHH--
Confidence 57999999 6899999888765 47777654443 3333 4556764 468999999999999999853 332221
Q ss_pred HHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE
Q psy13054 1030 RKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128)
Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128)
+-..+.|+.|.-++.=---.+-+-++|+++.++..+...
T Consensus 81 e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 81 ALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred HHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 222334444433332211123455667777666555433
No 486
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.55 E-value=1.7 Score=52.30 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=33.4
Q ss_pred CCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCC
Q psy13054 698 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128)
Q Consensus 698 ~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128)
+++||++.|+|.|.+|.++|+.|...|++|+++|..
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~ 37 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGK 37 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 468999999999999999999999999999999854
No 487
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=82.49 E-value=2.8 Score=48.29 Aligned_cols=76 Identities=16% Similarity=0.207 Sum_probs=51.0
Q ss_pred eEEEEEc-ChhhHHHHHHHhhC-CCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHcc
Q psy13054 958 TVGIVGL-GNIGLETAKLLKAF-KVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSL 1035 (1128)
Q Consensus 958 tvGIIG~-G~IG~~vA~~l~af-G~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~ 1035 (1128)
+|+|+|. |..|.++.++|..- .+++.....+.. ....+.+++++++|++++++|.. .++.+.. .+
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~--------~~~~~~~~~~~~~D~vFlalp~~-~s~~~~~--~~-- 69 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR--------KDAAERAKLLNAADVAILCLPDD-AAREAVS--LV-- 69 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc--------cCcCCHhHhhcCCCEEEECCCHH-HHHHHHH--HH--
Confidence 6999998 99999999999754 456554443321 12235677888999999999954 3332321 11
Q ss_pred CCCCcEEEEcC
Q psy13054 1036 MKPTAILVNTS 1046 (1128)
Q Consensus 1036 mk~ga~lIN~a 1046 (1128)
.+.|..+|+.|
T Consensus 70 ~~~g~~VIDlS 80 (310)
T TIGR01851 70 DNPNTCIIDAS 80 (310)
T ss_pred HhCCCEEEECC
Confidence 24577788877
No 488
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=82.46 E-value=3.2 Score=47.81 Aligned_cols=88 Identities=27% Similarity=0.388 Sum_probs=57.1
Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-C------hHhhhccCCEEEEecCCCccccc
Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-P------LDTLCAESDFIFVTCALTKDTEQ 1026 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~------l~ell~~sDvV~l~lPlt~~T~~ 1026 (1128)
.|.++.|.|.|.+|+.+++.++++|++|++.++...+.. ..+.|+..+ . ..++-...|+|+.+.+...
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~---- 244 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASH---- 244 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcc----
Confidence 467899999999999999999999999888876544433 333443221 1 1122345677776666321
Q ss_pred ccCHHHHccCCCCcEEEEcCC
Q psy13054 1027 LIGRKQFSLMKPTAILVNTSR 1047 (1128)
Q Consensus 1027 li~~~~l~~mk~ga~lIN~aR 1047 (1128)
.-...++.++++..+|+.+.
T Consensus 245 -~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 245 -DLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred -hHHHHHHHhcCCCEEEEEec
Confidence 12445666777777777654
No 489
>PRK10206 putative oxidoreductase; Provisional
Probab=82.42 E-value=2.1 Score=50.00 Aligned_cols=64 Identities=11% Similarity=0.171 Sum_probs=40.8
Q ss_pred eEEEEEcChhhHH-HHHHH-hh-CCCEEEE-EeCCCCchh-hhhcC-Ccc-cChHhhhc--cCCEEEEecCCC
Q psy13054 958 TVGIVGLGNIGLE-TAKLL-KA-FKVSKIL-YTSRRVKEE-GTALG-AQL-VPLDTLCA--ESDFIFVTCALT 1021 (1128)
Q Consensus 958 tvGIIG~G~IG~~-vA~~l-~a-fG~~Vi~-~d~~~~~~~-~~~~g-~~~-~~l~ell~--~sDvV~l~lPlt 1021 (1128)
++||||+|.|++. .+..+ .. -++++++ +|+...+.. ....+ ... .++++++. +-|+|++++|..
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~ 75 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHAD 75 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCch
Confidence 6999999998864 34434 32 2677775 444332222 33333 333 48999996 579999999944
No 490
>PRK06392 homoserine dehydrogenase; Provisional
Probab=82.37 E-value=3.9 Score=47.63 Aligned_cols=107 Identities=18% Similarity=0.314 Sum_probs=63.2
Q ss_pred eEEEEEcChhhHHHHHHHhh--------CCCEEEEEeCCCCc---hh------h---hhcC----C--cccChHhhh-cc
Q psy13054 958 TVGIVGLGNIGLETAKLLKA--------FKVSKILYTSRRVK---EE------G---TALG----A--QLVPLDTLC-AE 1010 (1128)
Q Consensus 958 tvGIIG~G~IG~~vA~~l~a--------fG~~Vi~~d~~~~~---~~------~---~~~g----~--~~~~l~ell-~~ 1010 (1128)
+|+|+|+|+||+.+++.+.. ++.+|+.+.++... +. . .+.+ . ...++++++ .+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~ 81 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK 81 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence 69999999999999999865 67776654332210 00 0 0101 1 112456654 46
Q ss_pred CCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCccc-CHHHHHHHHhcCCc
Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLL-DQEALVEFLKDKKI 1065 (1128)
Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lV-de~aL~~aL~~g~i 1065 (1128)
+|+|+=+.|..++-..-. .-..+.++.|.-+|-..-|.+. .-+.|.+..+++..
T Consensus 82 ~DVvVE~t~~~~~g~~~~-~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~ 136 (326)
T PRK06392 82 PDVIVDVTPASKDGIREK-NLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRR 136 (326)
T ss_pred CCEEEECCCCCCcCchHH-HHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCC
Confidence 899999888532111011 1235566778888877777765 45566666555543
No 491
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=82.37 E-value=3.2 Score=48.73 Aligned_cols=89 Identities=24% Similarity=0.341 Sum_probs=59.6
Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEE-EEeCCCCchh-hhh-cCCccc-C-hH--------hhh--ccCCEEEEecCC
Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKI-LYTSRRVKEE-GTA-LGAQLV-P-LD--------TLC--AESDFIFVTCAL 1020 (1128)
Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi-~~d~~~~~~~-~~~-~g~~~~-~-l~--------ell--~~sDvV~l~lPl 1020 (1128)
+.+|.|+|.|.||...+..++.+|+..+ +.|....+.+ +++ .+.... . .+ ++. ..+|+++-|..
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 3399999999999999999999997544 4455555555 444 344322 1 11 222 24899998888
Q ss_pred CcccccccCHHHHccCCCCcEEEEcCCCc
Q psy13054 1021 TKDTEQLIGRKQFSLMKPTAILVNTSRGG 1049 (1128)
Q Consensus 1021 t~~T~~li~~~~l~~mk~ga~lIN~aRG~ 1049 (1128)
.+. .+ ...++..+++..++.+|=..
T Consensus 248 ~~~---~~-~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 248 SPP---AL-DQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred CHH---HH-HHHHHHhcCCCEEEEEeccC
Confidence 322 12 35677788888888886553
No 492
>PRK08507 prephenate dehydrogenase; Validated
Probab=82.21 E-value=1.6 Score=49.35 Aligned_cols=31 Identities=29% Similarity=0.377 Sum_probs=26.9
Q ss_pred EEEEEecChhhHHHHHHHhhCC--CeEEEEcCC
Q psy13054 703 TVGIVGLGNIGLETAKLLKAFK--VSKILYTSR 733 (1128)
Q Consensus 703 tvGIiG~G~IG~~va~r~~afg--~~vi~y~~~ 733 (1128)
+|||||+|++|+.+|+.++.-| .++.+||++
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~ 34 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHN 34 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 6999999999999999998656 478888874
No 493
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=82.21 E-value=2.1 Score=48.18 Aligned_cols=75 Identities=13% Similarity=0.079 Sum_probs=41.2
Q ss_pred CEEEEEecChhhHHHHHHHhhC---CCeE-EEEcCCCcccc-----CchhhhHHHHHhh-c-----CCChhhhhhhhHHH
Q psy13054 702 ATVGIVGLGNIGLETAKLLKAF---KVSK-ILYTSRRVKEE-----GQLFSLVYDFCRY-S-----IGGVTIKRLVKKTF 766 (1128)
Q Consensus 702 ktvGIiG~G~IG~~va~r~~af---g~~v-i~y~~~~~~~~-----~~~~~~~~~la~~-~-----pg~~~t~~l~~~~~ 766 (1128)
.+|||||+|+||+.|++.+..= ++++ .+|++...+.. ...++-+++|+.+ . -.+++.-+=.-..+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~~av~e~~~~i 82 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQAIAEHAEGC 82 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCHHHHHHHHHHH
Confidence 5899999999999999987641 2333 34555321111 1112226776433 2 44444444444555
Q ss_pred HHHhcceEEe
Q psy13054 767 ILSFGGLVVT 776 (1128)
Q Consensus 767 l~~~~~~~~~ 776 (1128)
|++-.-++|.
T Consensus 83 L~~g~dlvv~ 92 (267)
T PRK13301 83 LTAGLDMIIC 92 (267)
T ss_pred HhcCCCEEEE
Confidence 5555444443
No 494
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=82.17 E-value=1.6 Score=49.85 Aligned_cols=49 Identities=16% Similarity=0.469 Sum_probs=39.8
Q ss_pred CHHHHhhcCCEEEEecCCC-cccccccCHHHHhcCCCCcEEEEec--CCCcc
Q psy13054 313 PLDTLCAESDFIFVTCALT-KDTEQLIGRKQFSLMKPTAILINTS--RGGLL 361 (1128)
Q Consensus 313 sLdeLl~~SDiVslh~PLT-~~T~~lIn~~~l~~MK~gaiLINta--RG~lV 361 (1128)
.++|.+.++|+|+-.+=.+ .+.-.|+.++.+++||||+++|-+| -|++|
T Consensus 224 ~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~ 275 (371)
T COG0686 224 NIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCF 275 (371)
T ss_pred HHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCCce
Confidence 5899999999998776444 3467899999999999999999986 44444
No 495
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=82.11 E-value=2.5 Score=50.10 Aligned_cols=65 Identities=17% Similarity=0.110 Sum_probs=45.7
Q ss_pred chHhHHHHHHHHHHHHHHhhhhhhhhhhcCccccccccccCCccCCCCCCEEEEEe-cChhhHHHHHHHhhCCCeEEEEc
Q psy13054 653 SSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVG-LGNIGLETAKLLKAFKVSKILYT 731 (1128)
Q Consensus 653 ~~~aVAE~ai~llLa~~R~i~~~~~~~r~G~W~~~~~~~~~~~~~~l~gktvGIiG-~G~IG~~va~r~~afg~~vi~y~ 731 (1128)
.....++-.+-.++...|+...- ..+.. ..-..++||||| +|.||+.+|+.++.-|.+|.+|+
T Consensus 66 l~~~~~~~i~~~i~~~s~~~q~~------~~~~~----------~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d 129 (374)
T PRK11199 66 VPPDLIEDVLRRVMRESYSSEND------KGFKT----------LNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILE 129 (374)
T ss_pred CCHHHHHHHHHHHHHHHHHHhHH------hcccc----------cCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeC
Confidence 34444566777778777753321 11110 111458999999 99999999999999999999999
Q ss_pred CC
Q psy13054 732 SR 733 (1128)
Q Consensus 732 ~~ 733 (1128)
+.
T Consensus 130 ~~ 131 (374)
T PRK11199 130 QD 131 (374)
T ss_pred CC
Confidence 63
No 496
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=82.09 E-value=2.4 Score=49.67 Aligned_cols=86 Identities=23% Similarity=0.271 Sum_probs=50.8
Q ss_pred CCCeEEEEEc-ChhhHHHHHHHhhCCC---EEEEEeCCCCch-hhhhcCC--cccChH-hhhccCCEEEEecCCCccccc
Q psy13054 955 KGATVGIVGL-GNIGLETAKLLKAFKV---SKILYTSRRVKE-EGTALGA--QLVPLD-TLCAESDFIFVTCALTKDTEQ 1026 (1128)
Q Consensus 955 ~gktvGIIG~-G~IG~~vA~~l~afG~---~Vi~~d~~~~~~-~~~~~g~--~~~~l~-ell~~sDvV~l~lPlt~~T~~ 1026 (1128)
...+|+|||. |.+|+++.++|..-+. ++.......... .....+. ...+++ +.+..+|+|++++|.. .++
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~s~- 83 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGS-ISK- 83 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcH-HHH-
Confidence 4568999998 9999999999987443 333332222111 1111121 112222 4558899999999954 222
Q ss_pred ccCHHHHccC-CCCcEEEEcC
Q psy13054 1027 LIGRKQFSLM-KPTAILVNTS 1046 (1128)
Q Consensus 1027 li~~~~l~~m-k~ga~lIN~a 1046 (1128)
+..... +.|+.+|+.|
T Consensus 84 ----~~~~~~~~~g~~VIDlS 100 (344)
T PLN02383 84 ----KFGPIAVDKGAVVVDNS 100 (344)
T ss_pred ----HHHHHHHhCCCEEEECC
Confidence 222222 4688888887
No 497
>PRK08328 hypothetical protein; Provisional
Probab=82.03 E-value=2.5 Score=46.73 Aligned_cols=37 Identities=35% Similarity=0.467 Sum_probs=31.8
Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCC
Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRR 989 (1128)
Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~ 989 (1128)
.|.+++|.|||+|.+|..+++.|...|. ++.++|...
T Consensus 24 ~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 24 KLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 6899999999999999999999998887 466676543
No 498
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=82.02 E-value=2.3 Score=48.99 Aligned_cols=89 Identities=27% Similarity=0.311 Sum_probs=58.2
Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCE-EEEEeCCCCchh-hhhcCCccc-C-----h---Hhhhc--cCCEEEEecCCC
Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVS-KILYTSRRVKEE-GTALGAQLV-P-----L---DTLCA--ESDFIFVTCALT 1021 (1128)
Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~-Vi~~d~~~~~~~-~~~~g~~~~-~-----l---~ell~--~sDvV~l~lPlt 1021 (1128)
.|.+|.|+|.|.+|...++.++.+|++ |++.++...+.+ +.+.|+..+ + . .++.. ..|+|+-+....
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~ 242 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNT 242 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCH
Confidence 488999999999999999999999999 887765544433 444554321 1 1 12222 367777655422
Q ss_pred cccccccCHHHHccCCCCcEEEEcCCC
Q psy13054 1022 KDTEQLIGRKQFSLMKPTAILVNTSRG 1048 (1128)
Q Consensus 1022 ~~T~~li~~~~l~~mk~ga~lIN~aRG 1048 (1128)
. .+ ...+..++++..++..+..
T Consensus 243 -~---~~-~~~~~~l~~~G~~v~~g~~ 264 (339)
T cd08239 243 -A---AR-RLALEAVRPWGRLVLVGEG 264 (339)
T ss_pred -H---HH-HHHHHHhhcCCEEEEEcCC
Confidence 1 11 3456777888888877643
No 499
>PLN00106 malate dehydrogenase
Probab=81.93 E-value=2.8 Score=48.70 Aligned_cols=116 Identities=19% Similarity=0.242 Sum_probs=71.0
Q ss_pred cCCCeEEEEEc-ChhhHHHHHHHhh--CCCEEEEEeCCCCchhhhhc-------CCc----ccChHhhhccCCEEEEecC
Q psy13054 954 LKGATVGIVGL-GNIGLETAKLLKA--FKVSKILYTSRRVKEEGTAL-------GAQ----LVPLDTLCAESDFIFVTCA 1019 (1128)
Q Consensus 954 L~gktvGIIG~-G~IG~~vA~~l~a--fG~~Vi~~d~~~~~~~~~~~-------g~~----~~~l~ell~~sDvV~l~lP 1019 (1128)
-..++|+|||. |+||..+|..|.. +.-+++.+|.......+.+. .+. ..++.+.++.||+|+++.-
T Consensus 16 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 16 APGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 34579999999 9999999999974 43478899876632211110 111 1235789999999998765
Q ss_pred CCcc---ccc-cc--CH-------HHHccCCCCcEEEEcCCCcc----cCHHHHHHH--HhcCCceEEE
Q psy13054 1020 LTKD---TEQ-LI--GR-------KQFSLMKPTAILVNTSRGGL----LDQEALVEF--LKDKKIGGAG 1069 (1128)
Q Consensus 1020 lt~~---T~~-li--~~-------~~l~~mk~ga~lIN~aRG~l----Vde~aL~~a--L~~g~i~gaa 1069 (1128)
.... ++- ++ |. +.+....+.+++|+++-.-- +....+.+. +...++.|.+
T Consensus 96 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~ 164 (323)
T PLN00106 96 VPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVT 164 (323)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEe
Confidence 3221 221 11 11 23444568999999987764 444444443 2335666654
No 500
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.78 E-value=1.5 Score=49.64 Aligned_cols=34 Identities=15% Similarity=0.333 Sum_probs=30.8
Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCc
Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV 735 (1128)
Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~ 735 (1128)
++|||||.|.+|..+|..+..-|.+|++||+...
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 5799999999999999999999999999997533
Done!