RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13054
(1128 letters)
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold,
formate/glycerate dehydrogenase substr binding domain,
oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB:
2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 318 bits (818), Expect = e-100
Identities = 116/257 (45%), Positives = 151/257 (58%), Gaps = 5/257 (1%)
Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933
NLKVI+T SVG DHL L EIK RGIRVG + +DT AE + L + RR E +
Sbjct: 75 ANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEE 134
Query: 934 ITSGEWALKQ-THIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 992
+ +G W + + G GL +TVGI+GLG IG A+ LK F V + LYT R+ +
Sbjct: 135 VKNGGWTSWKPLWLCG---YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRP 191
Query: 993 EG-TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLL 1051
E A+ V L A+SDFI V C+LT TE L + F MK TA+ +N SRG ++
Sbjct: 192 EEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVV 251
Query: 1052 DQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111
+Q+ L + L KI AGLDV PEPLP +HPL+ L NCV+ PH SAT R+ S +
Sbjct: 252 NQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLA 311
Query: 1112 AENIIRGYKGEPMIYEL 1128
A N++ G +GEPM EL
Sbjct: 312 ANNLLAGLRGEPMPSEL 328
Score = 166 bits (423), Expect = 2e-45
Identities = 76/233 (32%), Positives = 103/233 (44%), Gaps = 48/233 (20%)
Query: 510 KIMSKPKLFLTRDDYSRVP--AFEILGEMFDI-ITYPASEGQIPRDIFIEKLRGCSALLC 566
+ + K+F+TR R+P L D + S+ IP + G LLC
Sbjct: 4 RPVRLMKVFVTR----RIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLC 59
Query: 567 TSRDRVDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITT 626
D VDK++LD +G NLKVI+T
Sbjct: 60 LLSDHVDKRILDAAG-------------------------------------ANLKVIST 82
Query: 627 FSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWAL 686
SVG DHL L EIK RGIRVG + +DT AE + L + RR E + + +G W
Sbjct: 83 MSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTS 142
Query: 687 KQ-THIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738
+ + G GL +TVGI+GLG IG A+ LK F V + LYT R+ + E
Sbjct: 143 WKPLWLCG---YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPE 192
Score = 159 bits (404), Expect = 4e-43
Identities = 46/95 (48%), Positives = 58/95 (61%)
Query: 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365
A+ V L A+SDFI V C+LT TE L + F MK TA+ IN SRG +++Q+
Sbjct: 196 EFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDD 255
Query: 366 LVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400
L + L KI AGLDV PEPLP +HPL+ L NC
Sbjct: 256 LYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNC 290
Score = 111 bits (279), Expect = 2e-26
Identities = 47/124 (37%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
Query: 40 SRLLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDR 99
+R + E L + +++ + S+ +P + G LLC VDK +LD
Sbjct: 14 TRRIPAEGRVALARAADCEVEQWD-SDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDA 72
Query: 100 SGENLKVIATFSVGHDHLHLDEIKSRGIRVG-TVGPVSSDTVAEYNIGLAIAVSRRFQQR 158
+G NLKVI+T SVG DHL LDEIK RGIRVG T V +DT AE + L + RR +
Sbjct: 73 AGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPD-VLTDTTAELAVSLLLTTCRRLPEA 131
Query: 159 HNWI 162
+
Sbjct: 132 IEEV 135
Score = 57.6 bits (140), Expect = 8e-09
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 812 NGEWALKQ-THIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNK 866
NG W + + G GL +TVGI+GLG IG A+ LK F V + LYT R
Sbjct: 137 NGGWTSWKPLWLCG---YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQP 189
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 302 bits (776), Expect = 2e-94
Identities = 96/253 (37%), Positives = 142/253 (56%), Gaps = 10/253 (3%)
Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934
LKVI +SVG DH++L + RGIRV + ++ A+ + L +AV+RR EG
Sbjct: 65 GLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYA 124
Query: 935 TSGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 993
G W A ++G + L+G T+G+VG+G IG AK AF + +++Y +R K
Sbjct: 125 RDGLWKAWHPELLLG---LDLQGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHARTPKP- 179
Query: 994 GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQ 1053
L + L+ L E+D + + LT +T +L+ R++ MK AIL+NT+RG L+D
Sbjct: 180 ---LPYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDT 236
Query: 1054 EALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAE 1113
EALVE L+ + GAGLDV PEPLP HPL L N V+TPH SA + R+ + + E
Sbjct: 237 EALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVE 295
Query: 1114 NIIRGYKGEPMIY 1126
N++ +G
Sbjct: 296 NLLAVLEGREPPN 308
Score = 153 bits (389), Expect = 3e-41
Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 50/227 (22%)
Query: 516 KLFLTRDDYSRVP--AFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVD 573
++ +TR +P A + L E + +P+ ++++ G L+ T DR+D
Sbjct: 2 RVLVTR----TLPGKALDRLRERGLEVEVH-RGLFLPKAELLKRVEGAVGLIPTVEDRID 56
Query: 574 KQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDH 633
+V+D + K LKVI +SVG DH
Sbjct: 57 AEVMDRA--------------------------------------KGLKVIACYSVGVDH 78
Query: 634 LELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEW-ALKQTHII 692
++L + RGIRV + ++ A+ + L +AV+RR EG G W A ++
Sbjct: 79 VDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLL 138
Query: 693 GPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG 739
G + L+G T+G+VG+G IG AK AF + +++Y +R K
Sbjct: 139 G---LDLQGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHARTPKPLP 181
Score = 152 bits (387), Expect = 6e-41
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 307 LGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEAL 366
L + L+ L E+D + + LT +T +L+ R++ MK AIL+NT+RG L+D EAL
Sbjct: 180 LPYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEAL 239
Query: 367 VEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400
VE L+ + GAGLDV PEPLP HPL L N
Sbjct: 240 VEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNA 272
Score = 101 bits (255), Expect = 1e-23
Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 40 SRLLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDR 99
+R L ++L +LR R +P+ +++++G L+ ++D EV+DR
Sbjct: 6 TRTLPGKALDRLR--ERGLEVEVH-RGLFLPKAELLKRVEGAVGLIPTVEDRIDAEVMDR 62
Query: 100 SGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRH 159
+ LKVIA +SVG DH+ L+ + RGIRV V ++ A+ + L +AV+RR +
Sbjct: 63 -AKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGA 121
Query: 160 NWI 162
+
Sbjct: 122 AYA 124
Score = 54.1 bits (131), Expect = 1e-07
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 812 NGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNK 866
+G W A ++G + L+G T+G+VG+G IG AK AF + +++Y +R
Sbjct: 126 DGLWKAWHPELLLG---LDLQGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHARTP 177
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii}
PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 301 bits (773), Expect = 1e-93
Identities = 98/257 (38%), Positives = 144/257 (56%), Gaps = 7/257 (2%)
Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933
L+++ ++VGYD++++ E RGI V + + +D A+ L +A +R +G +
Sbjct: 66 PKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRF 125
Query: 934 ITSGEWALKQTHIIGPNIM---GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV 990
+ SGEW + P + G T+GI+GLG IG AK K F + +ILY SR
Sbjct: 126 VRSGEWKKRGV-AWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTR 183
Query: 991 KEEG-TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGG 1049
KEE L A+ PL+ L ESDF+ + LT++T LI ++ LMK TAIL+N +RG
Sbjct: 184 KEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGK 243
Query: 1050 LLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSS 1109
++D ALV+ LK+ I GAGLDV EP + L +LDN VLTPH SA+ R+ +
Sbjct: 244 VVDTNALVKALKEGWIAGAGLDVFEEEPYY-NEELFKLDNVVLTPHIGSASFGAREGMAE 302
Query: 1110 TSAENIIRGYKGEPMIY 1126
A+N+I +GE
Sbjct: 303 LVAKNLIAFKRGEIPPT 319
Score = 155 bits (395), Expect = 7e-42
Identities = 63/230 (27%), Positives = 108/230 (46%), Gaps = 50/230 (21%)
Query: 514 KPKLFLTRDDYSRVP--AFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDR 571
KPK+F+TR +P ++L + F++ + E +IPR+I ++K++ AL+ +R
Sbjct: 2 KPKVFITR----EIPEVGIKMLEDEFEVEVWG-DEKEIPREILLKKVKEVDALVTMLSER 56
Query: 572 VDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGY 631
+DK+V + + L+++ ++VGY
Sbjct: 57 IDKEVFENA--------------------------------------PKLRIVANYAVGY 78
Query: 632 DHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHI 691
D++++ E RGI V + + +D A+ L +A +R +G + + SGEW +
Sbjct: 79 DNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGV-A 137
Query: 692 IGPNIM---GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738
P + G T+GI+GLG IG AK K F + +ILY SR KEE
Sbjct: 138 WHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTRKEE 186
Score = 152 bits (387), Expect = 1e-40
Identities = 44/95 (46%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Query: 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365
L A+ PL+ L ESDF+ + LT++T LI ++ LMK TAILIN +RG ++D A
Sbjct: 190 ELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNA 249
Query: 366 LVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400
LV+ LK+ I GAGLDV EP + L +LDN
Sbjct: 250 LVKALKEGWIAGAGLDVFEEEPYY-NEELFKLDNV 283
Score = 101 bits (255), Expect = 2e-23
Identities = 31/123 (25%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 40 SRLLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDR 99
+R + + L F+++ + E +PR+I ++K+K AL+ +++DKEV +
Sbjct: 8 TREIPEVGIKMLE--DEFEVEVWG-DEKEIPREILLKKVKEVDALVTMLSERIDKEVFEN 64
Query: 100 SGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRH 159
L+++A ++VG+D++ ++E RGI V V +D A+ L +A +R +
Sbjct: 65 -APKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGD 123
Query: 160 NWI 162
++
Sbjct: 124 RFV 126
Score = 54.9 bits (133), Expect = 7e-08
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 812 NGEWALKQTHIIGPNIM---GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNK 866
+GEW + P + G T+GI+GLG IG AK K F + +ILY SR +
Sbjct: 128 SGEWKKRGV-AWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTR 183
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 292 bits (749), Expect = 3e-90
Identities = 81/259 (31%), Positives = 124/259 (47%), Gaps = 9/259 (3%)
Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933
EN+K I+T+S+G+DH++L KARGI+VG+ H + AE + L + +RR EG K
Sbjct: 66 ENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKM 125
Query: 934 ITSGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR--V 990
I + W + ++G L T+GI G G+IG AK + F + I Y
Sbjct: 126 IRTRSWPGWEPLELVG---EKLDNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRAS 181
Query: 991 KEEGTALGA-QLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGG 1049
+ + A LD+L + S F + T +T + + AI+VNT+RG
Sbjct: 182 SSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGD 241
Query: 1050 LLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSS 1109
L+D E +V L+ ++ AG DV EP + L N L PH SA R++ +
Sbjct: 242 LVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFPHIGSAATQAREDMAH 300
Query: 1110 TSAENIIRGYKGEPMIYEL 1128
+ + I + G M Y L
Sbjct: 301 QANDLIDALFGGADMSYAL 319
Score = 155 bits (395), Expect = 5e-42
Identities = 61/229 (26%), Positives = 96/229 (41%), Gaps = 50/229 (21%)
Query: 514 KPKLFLTRDDYSRVP--AFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDR 571
K K+ +T +P A E +D+I + + +I D IE + ALL T ++
Sbjct: 1 KKKILITW----PLPEAAMARARESYDVIAHG-DDPKITIDEMIETAKSVDALLITLNEK 55
Query: 572 VDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGY 631
K+V+D +N+K I+T+S+G+
Sbjct: 56 CRKEVIDRIP-------------------------------------ENIKCISTYSIGF 78
Query: 632 DHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEW-ALKQTH 690
DH++L KARGI+VG+ H + AE + L + +RR EG K I + W +
Sbjct: 79 DHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLE 138
Query: 691 IIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR-RVKEE 738
++G L T+GI G G+IG AK + F + I Y R
Sbjct: 139 LVG---EKLDNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASSS 183
Score = 144 bits (365), Expect = 5e-38
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 306 ALGA-QLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQE 364
+ A LD+L + S F + T +T + + AI++NT+RG L+D E
Sbjct: 187 SYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNE 246
Query: 365 ALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400
+V L+ ++ AG DV EP + L N
Sbjct: 247 LVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNT 281
Score = 108 bits (272), Expect = 1e-25
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 5/124 (4%)
Query: 40 SRLLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDR 99
+ L ++++ R +D+ + + ++ D IE K ALL ++K KEV+DR
Sbjct: 7 TWPLPEAAMARAR--ESYDVIAHG-DDPKITIDEMIETAKSVDALLITLNEKCRKEVIDR 63
Query: 100 SGENLKVIATFSVGHDHLHLDEIKSRGIRVG-TVGPVSSDTVAEYNIGLAIAVSRRFQQR 158
EN+K I+T+S+G DH+ LD K+RGI+VG + AE + L + +RR +
Sbjct: 64 IPENIKCISTYSIGFDHIDLDACKARGIKVGNAPH-GVTVATAEIAMLLLLGSARRAGEG 122
Query: 159 HNWI 162
I
Sbjct: 123 EKMI 126
Score = 55.6 bits (135), Expect = 4e-08
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 812 NGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKTP 870
W + ++G L T+GI G G+IG AK + F + I Y ++ +
Sbjct: 128 TRSWPGWEPLELVG---EKLDNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASSS 183
Query: 871 KRTE 874
Sbjct: 184 DEAS 187
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase,
oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri}
PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*
Length = 330
Score = 286 bits (733), Expect = 6e-88
Identities = 80/263 (30%), Positives = 128/263 (48%), Gaps = 15/263 (5%)
Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933
L+VI G+D+ ++ ARG+ + V + + AE IGLA+ + R +
Sbjct: 66 PELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAF 125
Query: 934 ITSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK 991
+ SG++ P G L ATVG +G+G IGL A L+ + + + ++ +
Sbjct: 126 VRSGKF-----RGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALD 180
Query: 992 EEG-TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGL 1050
+ LG + V L A SDFI + L DT L+ + +L++P A+LVN RG +
Sbjct: 181 TQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV 240
Query: 1051 LDQEALVEFLKDKKIGGAGLDVMIPE-------PLPADHPLVQLDNCVLTPHTSSATKAV 1103
+D+ A++ L+ ++GG DV E P D L+ N + TPH SA +AV
Sbjct: 241 VDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAV 300
Query: 1104 RDEKSSTSAENIIRGYKGEPMIY 1126
R E +A+NI++ GE I
Sbjct: 301 RLEIERCAAQNILQALAGERPIN 323
Score = 146 bits (372), Expect = 7e-39
Identities = 49/229 (21%), Positives = 85/229 (37%), Gaps = 52/229 (22%)
Query: 514 KPKLFLTRDDYSRVP--AFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDR 571
PKL +T RV ++L ++IT + R+ + + R A++ DR
Sbjct: 2 LPKLVITH----RVHEEILQLLAPHCELITNQTDST-LTREEILRRCRDAQAMMAFMPDR 56
Query: 572 VDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGY 631
VD L L+VI G+
Sbjct: 57 VDADFLQAC--------------------------------------PELRVIGCALKGF 78
Query: 632 DHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHI 691
D+ ++ ARG+ + V + + AE IGLA+ + R + + SG++
Sbjct: 79 DNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKF-----RG 133
Query: 692 IGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738
P G L ATVG +G+G IGL A L+ + + + ++ + +
Sbjct: 134 WQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQ 182
Score = 146 bits (370), Expect = 1e-38
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365
LG + V L A SDFI + L DT L+ + +L++P A+L+N RG ++D+ A
Sbjct: 186 RLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAA 245
Query: 366 LVEFLKDKKIGGAGLDVMIPE-------PLPADHPLVQLDNC 400
++ L+ ++GG DV E P D L+ N
Sbjct: 246 VLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNT 287
Score = 96.9 bits (242), Expect = 9e-22
Identities = 25/123 (20%), Positives = 52/123 (42%), Gaps = 4/123 (3%)
Query: 40 SRLLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDR 99
+ + E L L ++ T + R+ + + + A++ +VD + L
Sbjct: 8 THRVHEEILQLLA--PHCELITNQTDST-LTREEILRRCRDAQAMMAFMPDRVDADFLQ- 63
Query: 100 SGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRH 159
+ L+VI G D+ +D +RG+ + V + + AE IGLA+ + R +
Sbjct: 64 ACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAAD 123
Query: 160 NWI 162
++
Sbjct: 124 AFV 126
Score = 54.5 bits (132), Expect = 7e-08
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 812 NGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVK 868
+G++ P G L ATVG +G+G IGL A L+ + + Y +
Sbjct: 128 SGKF-----RGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGA-TLQYHEAKALD 180
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 285 bits (731), Expect = 2e-87
Identities = 79/252 (31%), Positives = 118/252 (46%), Gaps = 7/252 (2%)
Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933
LK I T SVGYDH+++ ++ GI+V + SD AE + L + RR E +
Sbjct: 93 PGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRM 152
Query: 934 ITSGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR-RVK 991
+ SG W T ++G MGL G +GI G+G IG A + F + I Y +R R+
Sbjct: 153 VRSGSWPGWGPTQLLG---MGLTGRRLGIFGMGRIGRAIATRARGFGL-AIHYHNRTRLS 208
Query: 992 EEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLL 1051
LD+L SD + + + + + + + A+++N SRG L+
Sbjct: 209 HALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLI 268
Query: 1052 DQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111
+ +AL+E L+ K + AGLDV EP D LDN LTPH SAT RD
Sbjct: 269 NDDALIEALRSKHLFAAGLDVFANEP-AIDPRYRSLDNIFLTPHIGSATHETRDAMGWLL 327
Query: 1112 AENIIRGYKGEP 1123
+ I + +
Sbjct: 328 IQGIEALNQSDV 339
Score = 153 bits (390), Expect = 5e-41
Identities = 54/237 (22%), Positives = 85/237 (35%), Gaps = 49/237 (20%)
Query: 505 FFHNFKIMSKPKLFLTRDDYSRVP--AFEILGEMFDIITYPASEGQIPRDIFIEKLRGCS 562
+F + K FL R R L + FD+ + + + G
Sbjct: 19 YFQSMSTHPIQKAFLCR----RFTPAIEAELRQRFDLEVNL-EDTVLTPSGIASRAHGAE 73
Query: 563 ALLCTSRDRVDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLK 622
L T+ + + +V+ + LK
Sbjct: 74 VLFVTATEAITAEVIRKLQ-------------------------------------PGLK 96
Query: 623 VITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSG 682
I T SVGYDH+++ ++ GI+V + SD AE + L + RR E + + SG
Sbjct: 97 TIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSG 156
Query: 683 EW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738
W T ++G MGL G +GI G+G IG A + F + I Y +R
Sbjct: 157 SWPGWGPTQLLG---MGLTGRRLGIFGMGRIGRAIATRARGFGL-AIHYHNRTRLSH 209
Score = 142 bits (360), Expect = 4e-37
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365
LD+L SD + + + + + + + A++IN SRG L++ +A
Sbjct: 213 EGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDA 272
Query: 366 LVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400
L+E L+ K + AGLDV EP D LDN
Sbjct: 273 LIEALRSKHLFAAGLDVFANEP-AIDPRYRSLDNI 306
Score = 105 bits (265), Expect = 1e-24
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 40 SRLLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDR 99
R P ++LR RFD++ + + + G L + + EV+ +
Sbjct: 34 CRRFTPAIEAELR--QRFDLEVNL-EDTVLTPSGIASRAHGAEVLFVTATEAITAEVIRK 90
Query: 100 SGENLKVIATFSVGHDHLHLDEIKSRGIRVG-TVGPVSSDTVAEYNIGLAIAVSRR 154
LK IAT SVG+DH+ + +S GI+V T V SD AE + L + RR
Sbjct: 91 LQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPD-VLSDACAEIAMLLVLNACRR 145
Score = 54.1 bits (131), Expect = 1e-07
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 812 NGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKV 867
+G W T ++G MGL G +GI G+G IG A + F + I Y +R ++
Sbjct: 155 SGSWPGWGPTQLLG---MGLTGRRLGIFGMGRIGRAIATRARGFGL-AIHYHNRTRL 207
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 273 bits (701), Expect = 8e-84
Identities = 60/252 (23%), Positives = 97/252 (38%), Gaps = 14/252 (5%)
Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934
LK I + G DHL I + V ++D VAE+ + L +A +R + + +
Sbjct: 50 RLKFIQVVTAGLDHLPWESIPPH-VTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKM 108
Query: 935 TSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG 994
G++ I ++G V ++GLG IG K+L A ++ SR KE
Sbjct: 109 KRGDYGRDVE------IPLIQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPKEGP 161
Query: 995 TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQE 1054
L+ E+ L K T L+ + +LM A+ VN R +LD++
Sbjct: 162 ---WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRD 218
Query: 1055 ALVEFLKDKKIGGAGLDVMI-PEPLPADHPLVQLDNCVLTPHTSSATKAVR--DEKSSTS 1111
++ LK++ DV D L N V TP + R + +
Sbjct: 219 GVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEA 278
Query: 1112 AENIIRGYKGEP 1123
N+I G
Sbjct: 279 VRNLITYATGGR 290
Score = 148 bits (375), Expect = 1e-39
Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 1/103 (0%)
Query: 299 FERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRG 358
F R+ L+ E+ L K T L+ + +LM A+ +N R
Sbjct: 153 FSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRA 212
Query: 359 GLLDQEALVEFLKDKKIGGAGLDVMI-PEPLPADHPLVQLDNC 400
+LD++ ++ LK++ DV D L N
Sbjct: 213 EVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNV 255
Score = 108 bits (273), Expect = 5e-26
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 8/121 (6%)
Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678
LK I + G DHL I + V ++D VAE+ + L +A +R + +
Sbjct: 49 PRLKFIQVVTAGLDHLPWESIPPH-VTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEK 107
Query: 679 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738
+ G++ I ++G V ++GLG IG K+L A ++ SR KE
Sbjct: 108 MKRGDYGRDVE------IPLIQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPKEG 160
Query: 739 G 739
Sbjct: 161 P 161
Score = 72.6 bits (179), Expect = 7e-14
Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
Query: 63 PVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEI 122
P +E + + I + + ++ E L + LK I + G DHL + I
Sbjct: 11 PEAEEELRKYFKIVRGGDLGNVEAALVSRITAEELAK-MPRLKFIQVVTAGLDHLPWESI 69
Query: 123 KSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIAR 164
+ V ++D VAE+ + L +A +R Q + R
Sbjct: 70 P-PHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKR 110
Score = 52.2 bits (126), Expect = 3e-07
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 830 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKTPKRT 873
++G V ++GLG IG K+L A ++ SR + P R
Sbjct: 122 IQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPKEGPWRF 164
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 269 bits (691), Expect = 3e-81
Identities = 69/253 (27%), Positives = 115/253 (45%), Gaps = 7/253 (2%)
Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933
+NLK+ T +G DH++L R + V V + +S +VAE+ + + +++ R + +
Sbjct: 112 KNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEW 171
Query: 934 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 993
G W + L+ VG V G IGL + L F V + YT R E
Sbjct: 172 ARKGGWNIADCVSHA---YDLEAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPE 227
Query: 994 GTA--LGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGL 1050
L + + D + + C L +TE +I + L K A +VNT+RG L
Sbjct: 228 SVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKL 287
Query: 1051 LDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSST 1110
D++A+ L+ ++ G DV P+P P DHP + +TPH S T + ++
Sbjct: 288 CDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAG 347
Query: 1111 SAENIIRGYKGEP 1123
+ E + ++G P
Sbjct: 348 TREILECFFEGRP 360
Score = 140 bits (354), Expect = 7e-36
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 292 HYFGYNWFERSNGTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTA 350
HY + S L + + D + + C L +TE +I + L K A
Sbjct: 218 HYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGA 277
Query: 351 ILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399
++NT+RG L D++A+ L+ ++ G DV P+P P DHP +
Sbjct: 278 YIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPY 326
Score = 112 bits (283), Expect = 1e-26
Identities = 38/196 (19%), Positives = 68/196 (34%), Gaps = 44/196 (22%)
Query: 545 SEGQIPRDIFIEKLRGCSALLCTS--RDRVDKQVLDESGGYRCTEDFFGLDLDQMFRNPS 602
S+ P +F +L ++ + + + ++
Sbjct: 74 SDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKA---------------------- 111
Query: 603 KRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNI 662
KNLK+ T +G DH++L R + V V + +S +VAE+ +
Sbjct: 112 ----------------KNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVV 155
Query: 663 GLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKA 722
+ +++ R + + G W + L+ VG V G IGL + L
Sbjct: 156 MMILSLVRNYLPSHEWARKGGWNIADCVSHA---YDLEAMHVGTVAAGRIGLAVLRRLAP 212
Query: 723 FKVSKILYTSRRVKEE 738
F V + YT R E
Sbjct: 213 FDV-HLHYTDRHRLPE 227
Score = 77.3 bits (191), Expect = 6e-15
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
Query: 64 VSEGRMPRDIFIEKLKGCSALLCNPHQ--KVDKEVLDRSGENLKVIATFSVGHDHLHLDE 121
S+ P +F +L ++ P + E + + +NLK+ T +G DH+ L
Sbjct: 73 TSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAK-AKNLKLALTAGIGSDHVDLQS 131
Query: 122 IKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWI 162
R + V V +S +VAE+ + + +++ R + H W
Sbjct: 132 AIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWA 172
Score = 56.9 bits (138), Expect = 2e-08
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 806 CYHGTINGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRN 865
+ G W + L+ VG V G IGL + L F V + YT R+
Sbjct: 168 SHEWARKGGWNIADCVSHA---YDLEAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRH 223
Query: 866 KVKTPKRTEN 875
+ P+ E
Sbjct: 224 --RLPESVEK 231
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 261 bits (668), Expect = 5e-79
Identities = 69/271 (25%), Positives = 107/271 (39%), Gaps = 10/271 (3%)
Query: 859 ILYTSRNKVKT--PKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYN 916
++Y + +KT + T LK + S G D+L L ++A G+ V + I +D ++E
Sbjct: 43 VMYGNHPLLKTILARPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESV 102
Query: 917 IGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLK 976
+ ++V R + L G + I G G IG A
Sbjct: 103 LAAMLSVVRGYHAAWLNQRGARQWALPMTT-----STLTGQQLLIYGTGQIGQSLAAKAS 157
Query: 977 AFKVSKILYTSRRVKE-EGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSL 1035
A + ++ + + A ++FI LT T L + F
Sbjct: 158 ALGM-HVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQ 216
Query: 1036 MKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPH 1095
K +L+N RG +D AL+ L ++ A LDV PEPLP DHPL Q D+ ++TPH
Sbjct: 217 TKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPH 276
Query: 1096 TSSATKAVRDEKSSTSAENIIRGYK-GEPMI 1125
S R A N + K G +
Sbjct: 277 ISGQIAHFRATVFPIFAANFAQFVKDGTLVR 307
Score = 140 bits (354), Expect = 2e-36
Identities = 33/97 (34%), Positives = 42/97 (43%)
Query: 304 GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQ 363
A ++FI LT T L + F K +LIN RG +D
Sbjct: 175 HFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDT 234
Query: 364 EALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400
AL+ L ++ A LDV PEPLP DHPL Q D+
Sbjct: 235 TALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDV 271
Score = 100 bits (252), Expect = 3e-23
Identities = 26/132 (19%), Positives = 44/132 (33%), Gaps = 7/132 (5%)
Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678
LK + S G D+L L ++A G+ V + I +D ++E + ++V R +
Sbjct: 60 NQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLN 119
Query: 679 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738
L G + I G G IG A A + ++ +
Sbjct: 120 QRGARQWALPMT-----TSTLTGQQLLIYGTGQIGQSLAAKASALGM-HVIGVNTTGHPA 173
Query: 739 GQLFSLVYDFCR 750
F F
Sbjct: 174 DH-FHETVAFTA 184
Score = 71.9 bits (177), Expect = 2e-13
Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 15/128 (11%)
Query: 40 SRLLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDR 99
++ PE L +L+ TYP + + + N K +L R
Sbjct: 7 AQATKPEQLQQLQ-------TTYPDWTFKDAAAVTAADYDQIEVMYGNHPL--LKTILAR 57
Query: 100 SGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRF---- 155
LK + S G D+L L +++ G+ V + +D ++E + ++V R +
Sbjct: 58 PTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAW 117
Query: 156 --QQRHNW 161
Q+
Sbjct: 118 LNQRGARQ 125
Score = 51.9 bits (125), Expect = 6e-07
Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 11/65 (16%)
Query: 830 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKTPKRTENLKVITTFSVGYDHL 889
L G + I G G IG A A + ++ + T ++ F
Sbjct: 135 LTGQQLLIYGTGQIGQSLAAKASALGM-HVIGVNT----TGHPADH------FHETVAFT 183
Query: 890 ELHEI 894
+
Sbjct: 184 ATADA 188
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate
binding domain, cofactor bindi domain, oxidoreductase;
1.47A {Solenostemon scutellarioides} PDB: 3baz_A*
Length = 333
Score = 261 bits (668), Expect = 8e-79
Identities = 83/249 (33%), Positives = 123/249 (49%), Gaps = 8/249 (3%)
Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934
L+++++FSVG D ++L + + +G+RV + + +D VA+ IGL +AV RR E K +
Sbjct: 87 KLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYV 146
Query: 935 TSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG 994
G W + G VGI+GLG IGL A+ +AF I Y SR K
Sbjct: 147 RRGAWK-FGDFKLTTKF---SGKRVGIIGLGRIGLAVAERAEAFDC-PISYFSRSKKPNT 201
Query: 995 TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQE 1054
+ L + SD + V C LT +T +I R+ + P +L+N RG +D+
Sbjct: 202 NY--TYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEP 259
Query: 1055 ALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAEN 1114
LV L + ++GGAGLDV EP L L+N VL PH S T R + N
Sbjct: 260 ELVSALVEGRLGGAGLDVFEREPEV-PEKLFGLENVVLLPHVGSGTVETRKVMADLVVGN 318
Query: 1115 IIRGYKGEP 1123
+ + G+P
Sbjct: 319 LEAHFSGKP 327
Score = 140 bits (355), Expect = 1e-36
Identities = 53/229 (23%), Positives = 87/229 (37%), Gaps = 51/229 (22%)
Query: 512 MSKPKLFLTRDDYSRVPAF--EILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSR 569
M + + + + + L + F + Y RD + A++ S
Sbjct: 21 MEAIGVLMMC----PMSTYLEQELDKRFKLFRYW--TQPAQRDFLALQAESIRAVVGNSN 74
Query: 570 DRVDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSV 629
D +++D P L+++++FSV
Sbjct: 75 AGADAELID--------------------ALP------------------KLEIVSSFSV 96
Query: 630 GYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQT 689
G D ++L + + +G+RV + + +D VA+ IGL +AV RR E K + G W
Sbjct: 97 GLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWK-FGD 155
Query: 690 HIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738
+ G VGI+GLG IGL A+ +AF I Y SR K
Sbjct: 156 FKLTTKF---SGKRVGIIGLGRIGLAVAERAEAFDC-PISYFSRSKKPN 200
Score = 125 bits (316), Expect = 2e-31
Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 292 HYFGYNWFERSNGTALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTA 350
YF RS + L + SD + V C LT +T +I R+ + P
Sbjct: 191 SYFS-----RSKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKG 245
Query: 351 ILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400
+LIN RG +D+ LV L + ++GGAGLDV EP L L+N
Sbjct: 246 VLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEV-PEKLFGLENV 294
Score = 91.1 bits (227), Expect = 8e-20
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 52 RFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFS 111
+ RF + + RD + + A++ N + D E++D L+++++FS
Sbjct: 39 ELDKRFKL--FRYWTQPAQRDFLALQAESIRAVVGNSNAGADAELIDA-LPKLEIVSSFS 95
Query: 112 VGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWI 162
VG D + L + + +G+RV V +D VA+ IGL +AV RR + ++
Sbjct: 96 VGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYV 146
Score = 53.8 bits (130), Expect = 1e-07
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 813 GEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKV 867
G W + G VGI+GLG IGL A+ +AF I Y SR+K
Sbjct: 149 GAWK-FGDFKLTTKF---SGKRVGIIGLGRIGLAVAERAEAFDC-PISYFSRSKK 198
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein
structural and functional analyses; 1.95A {Pyrococcus
horikoshii}
Length = 333
Score = 259 bits (665), Expect = 2e-78
Identities = 88/288 (30%), Positives = 136/288 (47%), Gaps = 9/288 (3%)
Query: 842 NIGLETAKLLKAFK-VSKILYTSRNKVKTPK---RTENLKVITTFSVGYDHLELHEIKAR 897
+ +L I+ + K+ T + E LKVI+ S GYD+++L E R
Sbjct: 28 ILYPSGEELKGVIGRFDGIIVSPTTKI-TREVLENAERLKVISCHSAGYDNIDLEEATKR 86
Query: 898 GIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQ-THIIGPNIMGLKG 956
GI V V + S+ VAE+ +GL I + R+ K I GEW I L G
Sbjct: 87 GIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYG 146
Query: 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIF 1015
VGI+G+G IG A+ L F V K+ Y SR K L A+ + +D L +SD +
Sbjct: 147 KKVGILGMGAIGKAIARRLIPFGV-KLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVI 205
Query: 1016 VTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIP 1075
+ LT+DT +I ++ ++ LVN RG L+D++A+ E +K K+ G DV
Sbjct: 206 LALPLTRDTYHIINEERVKKLE-GKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEK 264
Query: 1076 EPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEP 1123
EP+ VLTPH + +++ + EN+++ +GE
Sbjct: 265 EPVREHELFKYEWETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGEV 312
Score = 134 bits (340), Expect = 1e-34
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365
L A+ + +D L +SD + + LT+DT +I ++ ++ L+N RG L+D++A
Sbjct: 186 ELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLE-GKYLVNIGRGALVDEKA 244
Query: 366 LVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399
+ E +K K+ G DV EP+
Sbjct: 245 VTEAIKQGKLKGYATDVFEKEPVREHELFKYEWE 278
Score = 126 bits (319), Expect = 8e-32
Identities = 55/228 (24%), Positives = 88/228 (38%), Gaps = 50/228 (21%)
Query: 514 KPKLFLTRDDYSRVP--AFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDR 571
+PK+ + ++ A E L + D+ + + ++ + +
Sbjct: 2 RPKVGVLL----KMKREALEELKKYADVEIIL----YPSGEELKGVIGRFDGIIVSPTTK 53
Query: 572 VDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGY 631
+ ++VL+ + + LKVI+ S GY
Sbjct: 54 ITREVLENA--------------------------------------ERLKVISCHSAGY 75
Query: 632 DHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQ-TH 690
D+++L E RGI V V + S+ VAE+ +GL I + R+ K I GEW
Sbjct: 76 DNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIW 135
Query: 691 IIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738
I L G VGI+G+G IG A+ L F V K+ Y SR K
Sbjct: 136 TGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRHRKVN 182
Score = 83.4 bits (207), Expect = 3e-17
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 40 SRLLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDR 99
+ E+L +L+ D++ + + ++ +P K+ +EVL+
Sbjct: 8 LLKMKREALEELK--KYADVEIIL----YPSGEELKGVIGRFDGIIVSPTTKITREVLEN 61
Query: 100 SGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRH 159
E LKVI+ S G+D++ L+E RGI V V + S+ VAE+ +GL I + R+
Sbjct: 62 -AERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYAD 120
Query: 160 NWI 162
+I
Sbjct: 121 KFI 123
Score = 51.0 bits (123), Expect = 1e-06
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 812 NGEWALKQ-THIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKTP 870
GEW I L G VGI+G+G IG A+ L F V K+ Y SR+ +
Sbjct: 125 RGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRH--RKV 181
Query: 871 KRTENLKV 878
+ LK
Sbjct: 182 NVEKELKA 189
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A*
2w2l_D* 2w2k_B
Length = 348
Score = 258 bits (661), Expect = 1e-77
Identities = 69/255 (27%), Positives = 109/255 (42%), Gaps = 8/255 (3%)
Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933
+LKV G+D L+L + RG+ + ++ + L ++V R +
Sbjct: 79 SSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERA 138
Query: 934 ITSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAK-LLKAFKVSKILYTSRRV 990
+G+ + +G +G VGLG I E A+ + + K++Y
Sbjct: 139 ARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAP 197
Query: 991 K--EEGTALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSR 1047
E ALGA+ V L+ L SD + V+ K T LI F+ MKP + +VNT+R
Sbjct: 198 ADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTAR 257
Query: 1048 GGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEK 1107
G ++ Q+AL+ LK K+ AGLDV EP L+++ + LT H E
Sbjct: 258 GPVISQDALIAALKSGKLLSAGLDVHEFEP-QVSKELIEMKHVTLTTHIGGVAIETFHEF 316
Query: 1108 SSTSAENIIRGYKGE 1122
+ NI R
Sbjct: 317 ERLTMTNIDRFLLQG 331
Score = 130 bits (329), Expect = 5e-33
Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 306 ALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQE 364
ALGA+ V L+ L SD + V+ K T LI F+ MKP + ++NT+RG ++ Q+
Sbjct: 205 ALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQD 264
Query: 365 ALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400
AL+ LK K+ AGLDV EP L+++ +
Sbjct: 265 ALIAALKSGKLLSAGLDVHEFEP-QVSKELIEMKHV 299
Score = 123 bits (311), Expect = 1e-30
Identities = 36/242 (14%), Positives = 74/242 (30%), Gaps = 57/242 (23%)
Query: 512 MSKPKLFLTRDDYSRVP-AFEILGEMFDIITYPASEGQIPRDIFIEKLR-----GCSALL 565
M +P++ L D + + + F++I + D F + LR A++
Sbjct: 1 MPRPRVLLLGDPARHLDDLWSDFQQKFEVIPANLTT----HDGFKQALREKRYGDFEAII 56
Query: 566 C------TSRDRVDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIK 619
T + ++
Sbjct: 57 KLAVENGTESYPWNADLISHLP-------------------------------------S 79
Query: 620 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 679
+LKV G+D L+L + RG+ + ++ + L ++V R +
Sbjct: 80 SLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAA 139
Query: 680 TSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAK-LLKAFKVSKILYTSRRVK 736
+G+ + +G +G VGLG I E A+ + + K++Y
Sbjct: 140 RTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAPA 198
Query: 737 EE 738
+
Sbjct: 199 DA 200
Score = 80.8 bits (200), Expect = 3e-16
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 15/122 (12%)
Query: 52 RFNSRFDIDTYPVSEGRMPRDIFIEKLK-----GCSALLCNPHQ------KVDKEVLDRS 100
F +F++ D F + L+ A++ + + +++
Sbjct: 22 DFQQKFEVIPAN----LTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHL 77
Query: 101 GENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHN 160
+LKV A G D L LD + RG+ ++ + L ++V R
Sbjct: 78 PSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSER 137
Query: 161 WI 162
Sbjct: 138 AA 139
Score = 47.3 bits (113), Expect = 2e-05
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 813 GEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAK-LLKAFKVSKILYTSRNKV 867
G+ + +G +G VGLG I E A+ + + K++Y
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAPA 198
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural
genomi research consortium, nysgrc, oxidoreductase; 2.50A
{Sinorhizobium meliloti}
Length = 340
Score = 256 bits (657), Expect = 3e-77
Identities = 75/249 (30%), Positives = 115/249 (46%), Gaps = 7/249 (2%)
Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934
+L +I VG D ++L + R I V + + +D VA+ I L +AV RR +G + +
Sbjct: 93 SLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLV 152
Query: 935 TSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG 994
G WA + +G + KG +G++GLG IG A +AF + + Y +R
Sbjct: 153 REGRWAAGEQLPLGHSP---KGKRIGVLGLGQIGRALASRAEAFGM-SVRYWNRSTLSGV 208
Query: 995 TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQE 1054
L +SD + V A + T+ ++ + P I+VN +RG ++D++
Sbjct: 209 DW--IAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDED 266
Query: 1055 ALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAEN 1114
AL+E LK I GAGLDV + EP N VL PH SAT R N
Sbjct: 267 ALIEALKSGTIAGAGLDVFVNEPAI-RSEFHTTPNTVLMPHQGSATVETRMAMGKLVLAN 325
Query: 1115 IIRGYKGEP 1123
+ + GE
Sbjct: 326 LAAHFAGEK 334
Score = 136 bits (345), Expect = 4e-35
Identities = 46/238 (19%), Positives = 82/238 (34%), Gaps = 53/238 (22%)
Query: 505 FFHNFKIMS--KPKLFLTRDDYSRVP--AFEILGEMFDIITYPASEGQIPRDIFIEKLRG 560
+F + KP L L + + L + + + R L
Sbjct: 19 YFQSMLEFRNVKPDLLLVE----PMMPFVMDELQRNYSVHRLYQAA---DRPALEAALPS 71
Query: 561 CSALLCTSRDRVDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKN 620
A+ + + ++ + P +
Sbjct: 72 IRAVATGGGAGLSNEWME--------------------KLP------------------S 93
Query: 621 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 680
L +I VG D ++L + R I V + + +D VA+ I L +AV RR +G + +
Sbjct: 94 LGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVR 153
Query: 681 SGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738
G WA + +G + KG +G++GLG IG A +AF + + Y +R
Sbjct: 154 EGRWAAGEQLPLGHSP---KGKRIGVLGLGQIGRALASRAEAFGM-SVRYWNRSTLSG 207
Score = 122 bits (308), Expect = 3e-30
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 292 HYFGYNWFERSNGTALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTA 350
Y+ RS + + L +SD + V A + T+ ++ + P
Sbjct: 198 RYWN-----RSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEG 252
Query: 351 ILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400
I++N +RG ++D++AL+E LK I GAGLDV + EP N
Sbjct: 253 IVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAI-RSEFHTTPNT 301
Score = 90.0 bits (224), Expect = 2e-19
Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 6/122 (4%)
Query: 41 RLLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRS 100
++P + +L+ + + R L A+ + E +++
Sbjct: 37 EPMMPFVMDELQ--RNYSVHRLY---QAADRPALEAALPSIRAVATGGGAGLSNEWMEK- 90
Query: 101 GENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHN 160
+L +IA VG D + L + R I V T V +D VA+ I L +AV RR
Sbjct: 91 LPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDR 150
Query: 161 WI 162
+
Sbjct: 151 LV 152
Score = 54.2 bits (131), Expect = 1e-07
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 813 GEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKV 867
G WA + +G + KG +G++GLG IG A +AF + + Y +R+ +
Sbjct: 155 GRWAAGEQLPLGHSP---KGKRIGVLGLGQIGRALASRAEAFGM-SVRYWNRSTL 205
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 247 bits (632), Expect = 2e-74
Identities = 58/251 (23%), Positives = 111/251 (44%), Gaps = 15/251 (5%)
Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933
+ K+I S G DH++++ I + + G S +VAE+ L +A ++ E +
Sbjct: 48 KRTKMIQAISAGVDHIDVNGIPENVVLCSNAG-AYSISVAEHAFALLLAHAKNILENNEL 106
Query: 934 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 993
+ +G + T L G +GI+G G IG A L KAF + +++ +R ++
Sbjct: 107 MKAGIFRQSPT-------TLLYGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRSSVDQ 158
Query: 994 GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQ 1053
+ L +SDF+ + LT T ++ + + + +VN +R ++ +
Sbjct: 159 --NVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSK 216
Query: 1054 EALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATK-AVRDEKSSTSA 1112
++ FLK++ DV EP + L N +L+PH + + D +
Sbjct: 217 PDMIGFLKERSDVWYLSDVWWNEPEITETN---LRNAILSPHVAGGMSGEIMDIAIQLAF 273
Query: 1113 ENIIRGYKGEP 1123
EN+ ++GE
Sbjct: 274 ENVRNFFEGEG 284
Score = 135 bits (343), Expect = 2e-35
Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Query: 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365
+ L +SDF+ + LT T ++ + + + ++N +R ++ +
Sbjct: 159 NVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPD 218
Query: 366 LVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400
++ FLK++ DV EP + L N
Sbjct: 219 MIGFLKERSDVWYLSDVWWNEPEITETN---LRNA 250
Score = 96.5 bits (241), Expect = 6e-22
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678
K K+I S G DH++++ I + + G S +VAE+ L +A ++ E +
Sbjct: 48 KRTKMIQAISAGVDHIDVNGIPENVVLCSNAG-AYSISVAEHAFALLLAHAKNILENNEL 106
Query: 679 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738
+ +G + T L G +GI+G G IG A L KAF + +++ +R ++
Sbjct: 107 MKAGIFRQSPT-------TLLYGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRSSVDQ 158
Score = 64.1 bits (157), Expect = 5e-11
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 91 KVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIA 150
+V K+ G+ K+I S G DH+ ++ I + S +VAE+ L +A
Sbjct: 38 QVIKDRYVL-GKRTKMIQAISAGVDHIDVNGIPENVVLCSNA-GAYSISVAEHAFALLLA 95
Query: 151 VSRRFQQRHNWI 162
++ + + +
Sbjct: 96 HAKNILENNELM 107
Score = 47.6 bits (114), Expect = 1e-05
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 830 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 864
L G +GI+G G IG A L KAF + +++ +R
Sbjct: 120 LYGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTR 153
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso transcription
repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4
c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*
Length = 347
Score = 247 bits (632), Expect = 1e-73
Identities = 74/255 (29%), Positives = 116/255 (45%), Gaps = 6/255 (2%)
Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933
+ L++I G+D++++ GI V +V S + A+ + + + RR +
Sbjct: 84 KALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQA 143
Query: 934 ITSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK 991
+ G I ++G T+GI+GLG +G A KAF +L+ +
Sbjct: 144 LREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLS 202
Query: 992 EE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGG 1049
+ ALG Q V L L SD + + C L + LI M+ A LVNT+RGG
Sbjct: 203 DGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGG 262
Query: 1050 LLDQEALVEFLKDKKIGGAGLDVMIPEPLP-ADHPLVQLDNCVLTPHTSSATKAVRDEKS 1108
L+D++AL + LK+ +I GA LDV EP + PL N + TPH + ++ E
Sbjct: 263 LVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMR 322
Query: 1109 STSAENIIRGYKGEP 1123
+A I R G
Sbjct: 323 EEAAREIRRAITGRI 337
Score = 135 bits (343), Expect = 8e-35
Identities = 38/97 (39%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 306 ALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQE 364
ALG Q V L L SD + + C L + LI M+ A L+NT+RGGL+D++
Sbjct: 208 ALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEK 267
Query: 365 ALVEFLKDKKIGGAGLDVMIPEPLP-ADHPLVQLDNC 400
AL + LK+ +I GA LDV EP + PL N
Sbjct: 268 ALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNL 304
Score = 111 bits (280), Expect = 1e-26
Identities = 38/229 (16%), Positives = 74/229 (32%), Gaps = 45/229 (19%)
Query: 512 MSKPKLFLTRDDYSRVPAFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDR 571
P + L D IL ++ + Q ++I + L L
Sbjct: 19 SHMPLVALL-DGRDCTVEMPILKDVATVAFCD---AQSTQEIHEKVLNEAVGALMYHTIT 74
Query: 572 VDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGY 631
+ ++ L++ K L++I G+
Sbjct: 75 LTREDLEKF--------------------------------------KALRIIVRIGSGF 96
Query: 632 DHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHI 691
D++++ GI V +V S + A+ + + + RR + + G I
Sbjct: 97 DNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQI 156
Query: 692 IGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738
++G T+GI+GLG +G A KAF +L+ + +
Sbjct: 157 REVASGAARIRGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSDG 204
Score = 63.4 bits (155), Expect = 1e-10
Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 4/108 (3%)
Query: 53 FNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSV 112
+ + ++I + L L + +E L++ + L++I
Sbjct: 39 LKDVATVAFCD---AQSTQEIHEKVLNEAVGALMYHTITLTREDLEK-FKALRIIVRIGS 94
Query: 113 GHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHN 160
G D++ + GI V V S + A+ + + + RR H
Sbjct: 95 GFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQ 142
Score = 51.1 bits (123), Expect = 1e-06
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 812 NGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILY 861
G I ++G T+GI+GLG +G A KAF +L+
Sbjct: 146 EGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGF-NVLF 196
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A {Aquifex
aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 244 bits (625), Expect = 8e-73
Identities = 76/297 (25%), Positives = 125/297 (42%), Gaps = 28/297 (9%)
Query: 846 ETAKLLKAFKVSKILYTSRNKVKTP--KRTENLKVITTFSVGYDHLELHEIKARGIRVGS 903
LK ++ I +K+ + LK+I T SVG+DH++L K +GI V
Sbjct: 35 VPENELKKAEL--ISVFVYDKLTEELLSKMPRLKLIHTRSVGFDHIDLDYCKKKGILVTH 92
Query: 904 VGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG--LKGATVGI 961
+ S ++VAE+ + + + +R + + ++ I+ L T+G+
Sbjct: 93 IPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQD------SEILARELNRLTLGV 146
Query: 962 VGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALT 1021
+G G IG A AF K+L +E+ G LD L ESD I + T
Sbjct: 147 IGTGRIGSRVAMYGLAFG-MKVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYT 205
Query: 1022 KDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVM-------- 1073
K+T +I ++ SLMK L+NT+RG ++D +AL + K G GLDV
Sbjct: 206 KETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILIL 265
Query: 1074 -------IPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEP 1123
+ L DN ++TPH + T + + + + KG+
Sbjct: 266 KKYTEGKATDKNLKILELACKDNVIITPHIAYYTDKSLERIREETVKVVKAFVKGDL 322
Score = 130 bits (328), Expect = 5e-33
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 10/131 (7%)
Query: 295 GYNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILIN 354
Y+ +R + G LD L ESD I + TK+T +I ++ SLMK LIN
Sbjct: 169 CYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLIN 228
Query: 355 TSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLP 414
T+RG ++D +AL + K G GLDV E L+ G +
Sbjct: 229 TARGKVVDTDALYRAYQRGKFSGLGLDVFEDEE-----ILILKKYTEG-----KATDKNL 278
Query: 415 ADHPLVQLDNC 425
L DN
Sbjct: 279 KILELACKDNV 289
Score = 101 bits (253), Expect = 3e-23
Identities = 38/213 (17%), Positives = 77/213 (36%), Gaps = 51/213 (23%)
Query: 528 PAFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTE 587
P ++ + + Y + +L+ + D++ +++L +
Sbjct: 14 PFYQEALKDLSLKIYTTD----VSKVPENELKKAELISVFVYDKLTEELLSK-------- 61
Query: 588 DFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVG 647
+ LK+I T SVG+DH++L K +GI V
Sbjct: 62 ------------------------------MPRLKLIHTRSVGFDHIDLDYCKKKGILVT 91
Query: 648 SVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG--LKGATVG 705
+ S ++VAE+ + + + +R + + ++ I+ L T+G
Sbjct: 92 HIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQD------SEILARELNRLTLG 145
Query: 706 IVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738
++G G IG A AF K+L +E+
Sbjct: 146 VIGTGRIGSRVAMYGLAFG-MKVLCYDVVKRED 177
Score = 73.8 bits (182), Expect = 4e-14
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 52 RFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFS 111
+ + + + +LK + + K+ +E+L + LK+I T S
Sbjct: 18 EALKDLSLK---IYTTDVSKVP-ENELKKAELISVFVYDKLTEELLSK-MPRLKLIHTRS 72
Query: 112 VGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHN 160
VG DH+ LD K +GI V + S ++VAE+ + + + +R ++ +
Sbjct: 73 VGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIED 121
Score = 48.0 bits (115), Expect = 8e-06
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 8/51 (15%)
Query: 806 CYHGTINGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAF 854
++ I+ L T+G++G G IG A AF
Sbjct: 119 IEDRVKKLNFSQD------SEILARELNRLTLGVIGTGRIGSRVAMYGLAF 163
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 243 bits (623), Expect = 2e-72
Identities = 75/253 (29%), Positives = 125/253 (49%), Gaps = 7/253 (2%)
Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933
+NLK++ T +G DH++L A G+ V V + +VAE + + + R F G
Sbjct: 85 KNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQ 144
Query: 934 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV--K 991
+ GEW + L+G T+G VG G IG + LK F +LY R
Sbjct: 145 VVKGEWNVAGIAYRA---YDLEGKTIGTVGAGRIGKLLLQRLKPFGC-NLLYHDRLQMAP 200
Query: 992 EEGTALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGL 1050
E GA+ V L+ + + D I + LT+ T + ++ +K ++VN +RG +
Sbjct: 201 ELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAI 260
Query: 1051 LDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSST 1110
++++A+V+ ++ IGG DV P+P P DHP + N +TPHTS T + ++
Sbjct: 261 MERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAG 320
Query: 1111 SAENIIRGYKGEP 1123
+ + + R +KGE
Sbjct: 321 TKDMLERYFKGED 333
Score = 133 bits (336), Expect = 6e-34
Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 306 ALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQE 364
GA+ V L+ + + D I + LT+ T + ++ +K +++N +RG +++++
Sbjct: 205 ETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQ 264
Query: 365 ALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399
A+V+ ++ IGG DV P+P P DHP + N
Sbjct: 265 AVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPN 299
Score = 97.7 bits (244), Expect = 8e-22
Identities = 45/205 (21%), Positives = 71/205 (34%), Gaps = 47/205 (22%)
Query: 537 FDIITYPASEGQIPRDIFIEKLRGCSALLCTS--RDRVDKQVLDESGGYRCTEDFFGLDL 594
I EG P + + L+ T V + + ++
Sbjct: 41 HQYIVTDDKEG--PDCELEKHIPDLHVLISTPFHPAYVTAERIKKA-------------- 84
Query: 595 DQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISS 654
KNLK++ T +G DH++L A G+ V V +
Sbjct: 85 ------------------------KNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNV 120
Query: 655 DTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGL 714
+VAE + + + R F G + GEW + L+G T+G VG G IG
Sbjct: 121 VSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRA---YDLEGKTIGTVGAGRIGK 177
Query: 715 ETAKLLKAFKVSKILYTSR-RVKEE 738
+ LK F +LY R ++ E
Sbjct: 178 LLLQRLKPFGC-NLLYHDRLQMAPE 201
Score = 70.4 bits (173), Expect = 7e-13
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Query: 57 FDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQ--KVDKEVLDRSGENLKVIATFSVGH 114
EG P + + L+ P V E + + +NLK++ T +G
Sbjct: 41 HQYIVTDDKEG--PDCELEKHIPDLHVLISTPFHPAYVTAERIKK-AKNLKLLLTAGIGS 97
Query: 115 DHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWI 162
DH+ L + G+ V V + +VAE + + + R F +N +
Sbjct: 98 DHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQV 145
Score = 54.2 bits (131), Expect = 1e-07
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 807 YHGTINGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNK 866
Y+ + GEW + L+G T+G VG G IG + LK F +LY R +
Sbjct: 142 YNQVVKGEWNVAGIAYRA---YDLEGKTIGTVGAGRIGKLLLQRLKPFGC-NLLYHDRLQ 197
Query: 867 VKTPKRTENLKV 878
+ P+ +
Sbjct: 198 M-APELEKETGA 208
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A {Ralstonia
solanacearum}
Length = 352
Score = 243 bits (623), Expect = 2e-72
Identities = 79/295 (26%), Positives = 127/295 (43%), Gaps = 17/295 (5%)
Query: 844 GLETAKLLKAFKVSKILYTSRNKVKTPK----RTENLKVITTFSV----GYDHLELHEIK 895
+L + L R + + + R LK+I+ H++L
Sbjct: 36 VKGVGQLAARVADVEALVLIRERTRVTRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACT 95
Query: 896 ARGIRV-GSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEW---ALKQTHIIGPNI 951
+G+ V G S AE L +A RR + + G W LK T +
Sbjct: 96 DKGVVVLEGKG--SPVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFG 153
Query: 952 MG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVP-LDTLC 1008
+G LKG T+GI G G IG A +AF ++ +++ KE A G + D L
Sbjct: 154 IGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALF 213
Query: 1009 AESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068
+SD + V L +T +I + MKPTA+ VNTSR L+++ +V L + G A
Sbjct: 214 EQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMA 273
Query: 1069 GLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEP 1123
+DV EP+ H L++++NC+ TPH + + + +NI+ +G
Sbjct: 274 AIDVFETEPILQGHTLLRMENCICTPHIGYVERESYEMYFGIAFQNILDILQGNV 328
Score = 140 bits (355), Expect = 2e-36
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 306 ALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQE 364
A G + D L +SD + V L +T +I + MKPTA+ +NTSR L+++
Sbjct: 200 ADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEEN 259
Query: 365 ALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400
+V L + G A +DV EP+ H L++++NC
Sbjct: 260 GMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENC 295
Score = 85.8 bits (213), Expect = 5e-18
Identities = 50/231 (21%), Positives = 75/231 (32%), Gaps = 57/231 (24%)
Query: 522 DDYSRVP---AFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLC-TSRDRVDKQVL 577
DDY L + ++ + ++ AL+ R RV +Q+L
Sbjct: 9 DDYQDAVRKLDCFSLLQDHEVKVFN--NTVKGVGQLAARVADVEALVLIRERTRVTRQLL 66
Query: 578 DESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSV----GYDH 633
D R LK+I+ H
Sbjct: 67 D-----RL---------------------------------PKLKIISQTGRVSRDAGGH 88
Query: 634 LELHEIKARGIRV-GSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEW---ALKQT 689
++L +G+ V G S AE L +A RR + + G W LK T
Sbjct: 89 IDLEACTDKGVVVLEGKG--SPVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKST 146
Query: 690 HIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738
+ +G LKG T+GI G G IG A +AF + +L R +E
Sbjct: 147 TMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWGRENSKE 196
Score = 53.8 bits (130), Expect = 1e-07
Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 9/120 (7%)
Query: 43 LVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQ-KVDKEVLDRSG 101
L ++ + ++ AL+ + +V +++LDR
Sbjct: 13 DAVRKLDCFSLLQDHEVKVFN--NTVKGVGQLAARVADVEALVLIRERTRVTRQLLDR-L 69
Query: 102 ENLKVIATFSV----GHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQ 157
LK+I+ H+ L+ +G+ V G S AE L +A RR Q
Sbjct: 70 PKLKIISQTGRVSRDAGGHIDLEACTDKGVVV-LEGKGSPVAPAELTWALVMAAQRRIPQ 128
Score = 47.2 bits (113), Expect = 2e-05
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 812 NGEW---ALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNK 866
+G W LK T + +G LKG T+GI G G IG A +AF + +L R
Sbjct: 135 HGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWGRE- 192
Query: 867 VKTPKRTENLKV 878
+ +R
Sbjct: 193 -NSKERARADGF 203
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics
initiative, RSGI, structural genomics, oxidoreductase;
HET: NAD; 1.90A {Pyrococcus horikoshii}
Length = 307
Score = 232 bits (594), Expect = 8e-69
Identities = 98/251 (39%), Positives = 139/251 (55%), Gaps = 11/251 (4%)
Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933
LKVI VG D++++ K +GI V + SS +VAE +GL +V+R+ +
Sbjct: 65 PKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRK 124
Query: 934 ITSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK 991
+ G WA K+ MG L+G T+GI+G G IG + AK+ A + IL
Sbjct: 125 MREGVWAKKE-------AMGIELEGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPYPN 176
Query: 992 EE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGL 1050
EE + + V L+TL ESD + + L + T LI ++ LMK TAIL+NTSRG +
Sbjct: 177 EERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPV 236
Query: 1051 LDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSST 1110
+D ALV+ LK+ I GAGLDV EPLP DHPL + DN VLTPH ++T ++
Sbjct: 237 VDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVE 296
Query: 1111 SAENIIRGYKG 1121
AE +++ KG
Sbjct: 297 VAEKVVKILKG 307
Score = 138 bits (349), Expect = 6e-36
Identities = 47/95 (49%), Positives = 60/95 (63%)
Query: 305 TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQE 364
+ + V L+TL ESD + + L + T LI ++ LMK TAILINTSRG ++D
Sbjct: 181 KEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTN 240
Query: 365 ALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399
ALV+ LK+ I GAGLDV EPLP DHPL + DN
Sbjct: 241 ALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDN 275
Score = 95.3 bits (238), Expect = 2e-21
Identities = 53/230 (23%), Positives = 93/230 (40%), Gaps = 55/230 (23%)
Query: 512 MSKPKLFLTRDDYSRVPAFEILGEM-FDIITYPASEGQIPRDIFIEKLRGCSALLCTSRD 570
M + K+ + A ++L + ++I D +E ++ A++ S+
Sbjct: 1 MKRMKVLVA-APLHEK-AIQVLKDAGLEVIYEE----YPDEDRLVELVKDVEAIIVRSKP 54
Query: 571 RVDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVG 630
+V ++V++ + LKVI VG
Sbjct: 55 KVTRRVIESA--------------------------------------PKLKVIARAGVG 76
Query: 631 YDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTH 690
D++++ K +GI V + SS +VAE +GL +V+R+ + + G WA K+
Sbjct: 77 LDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKE-- 134
Query: 691 IIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738
MG L+G T+GI+G G IG + AK+ A + IL EE
Sbjct: 135 -----AMGIELEGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPYPNEE 178
Score = 64.9 bits (159), Expect = 3e-11
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 41 RLLVPESLSK-----LRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKE 95
++LV L + L+ ++ ++ D +E +K A++ KV +
Sbjct: 5 KVLVAAPLHEKAIQVLK-DAGLEVIYEEY----PDEDRLVELVKDVEAIIVRSKPKVTRR 59
Query: 96 VLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRF 155
V++ S LKVIA VG D++ ++ K +GI V SS +VAE +GL +V+R+
Sbjct: 60 VIE-SAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKI 118
Query: 156 QQRHN 160
Sbjct: 119 AFADR 123
Score = 45.2 bits (108), Expect = 7e-05
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 10/52 (19%)
Query: 812 NGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILY 861
G WA K+ MG L+G T+GI+G G IG + AK+ A + IL
Sbjct: 127 EGVWAKKE-------AMGIELEGKTIGIIGFGRIGYQVAKIANALGM-NILL 170
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 231 bits (590), Expect = 1e-67
Identities = 69/260 (26%), Positives = 118/260 (45%), Gaps = 13/260 (5%)
Query: 874 ENLKVITTFSVGYDHLELHEIKARG--IRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGR 931
+ LK++ VG DH++L I G I V V + +VAE+ + + + R F
Sbjct: 83 KKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAH 142
Query: 932 KCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV- 990
+ I + +W + ++G T+ +G G IG + L F ++LY +
Sbjct: 143 EQIINHDWEVAAIAKDA---YDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQAL 199
Query: 991 -KEEGTALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRG 1048
K+ +GA+ V ++ L A++D + V L T+ LI ++ S K A LVNT+RG
Sbjct: 200 PKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARG 259
Query: 1049 GLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN-----CVLTPHTSSATKAV 1103
+ E + L+ ++ G G DV P+P P DHP + N +TPH S T
Sbjct: 260 AICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDA 319
Query: 1104 RDEKSSTSAENIIRGYKGEP 1123
+ + + + + G+
Sbjct: 320 QTRYAQGTVNILESFFTGKF 339
Score = 135 bits (343), Expect = 1e-34
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 292 HYFGYNWFERSNGTALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTA 350
Y+ Y + +GA+ V ++ L A++D + V L T+ LI ++ S K A
Sbjct: 192 LYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGA 251
Query: 351 ILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIP 410
L+NT+RG + E + L+ ++ G G DV P+P P DHP + N GAG + M P
Sbjct: 252 WLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAG-NAMTP 310
Score = 91.2 bits (227), Expect = 1e-19
Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 47/198 (23%)
Query: 537 FDIITYPASEGQIPRDIFIEKLRGCSALLCTSRD--RVDKQVLDESGGYRCTEDFFGLDL 594
++IT EG + + + ++ T + K+ +D++
Sbjct: 39 HELITTSDKEG--GNSVLDQHIPDADIIITTPFHPAYITKERIDKA-------------- 82
Query: 595 DQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARG--IRVGSVGHI 652
K LK++ VG DH++L I G I V V
Sbjct: 83 ------------------------KKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGS 118
Query: 653 SSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNI 712
+ +VAE+ + + + R F + I + +W + ++G T+ +G G I
Sbjct: 119 NVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDA---YDIEGKTIATIGAGRI 175
Query: 713 GLETAKLLKAFKVSKILY 730
G + L F ++LY
Sbjct: 176 GYRVLERLVPFNPKELLY 193
Score = 63.9 bits (156), Expect = 9e-11
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Query: 57 FDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQ--KVDKEVLDRSGENLKVIATFSVGH 114
++ T EG + + + ++ P + KE +D+ + LK++ VG
Sbjct: 39 HELITTSDKEG--GNSVLDQHIPDADIIITTPFHPAYITKERIDK-AKKLKLVVVAGVGS 95
Query: 115 DHLHLDEIKSRG--IRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWI 162
DH+ LD I G I V V + +VAE+ + + + R F H I
Sbjct: 96 DHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQI 145
Score = 53.5 bits (129), Expect = 2e-07
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 806 CYHGTINGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRN 865
+ IN +W + ++G T+ +G G IG + L F ++LY
Sbjct: 141 AHEQIINHDWEVAAIAKDA---YDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQ 197
Query: 866 KVKTPKRTENLKV 878
+ E +
Sbjct: 198 AL-PKDAEEKVGA 209
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 228 bits (584), Expect = 3e-67
Identities = 56/262 (21%), Positives = 110/262 (41%), Gaps = 19/262 (7%)
Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934
+ ++ +VG D++++ + K G ++ +V S + +AE+ A + R+ + + +
Sbjct: 70 GITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKV 129
Query: 935 TSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG 994
+ IG + VG+VG G+IG ++++ F +K++ E
Sbjct: 130 ARHDLRWAP--TIGREVRDQ---VVGVVGTGHIGQVFMQIMEGFG-AKVITYDIFRNPEL 183
Query: 995 TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQE 1054
G + LD L ++D I + +I + + MK ++VN SRG L+D +
Sbjct: 184 EKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTD 243
Query: 1055 ALVEFLKDKKIGGAGLDVMIPE-------------PLPADHPLVQLDNCVLTPHTSSATK 1101
A++ L KI G +DV E P L+ N ++TP T+ T
Sbjct: 244 AVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTT 303
Query: 1102 AVRDEKSSTSAENIIRGYKGEP 1123
+ +N + +G+
Sbjct: 304 HAVRNMVVKAFDNNLELVEGKE 325
Score = 124 bits (314), Expect = 4e-31
Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 13/118 (11%)
Query: 295 GYNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILIN 354
Y+ F G + LD L ++D I + +I + + MK +++N
Sbjct: 174 TYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVN 233
Query: 355 TSRGGLLDQEALVEFLKDKKIGGAGLDVMIPE-------------PLPADHPLVQLDN 399
SRG L+D +A++ L KI G +DV E P L+ N
Sbjct: 234 VSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPN 291
Score = 96.9 bits (242), Expect = 1e-21
Identities = 30/227 (13%), Positives = 77/227 (33%), Gaps = 45/227 (19%)
Query: 512 MSKPKLFLTRDDYSRVPAFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDR 571
M+K + R+D P + + + ++ + + + +G ++ +
Sbjct: 1 MTKIFAYAIRED--EKPFLKEWEDAHKDVEVEYTDKLLTPET-VALAKGADGVVVYQQLD 57
Query: 572 VDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGY 631
+ L + ++ +VG
Sbjct: 58 YIAETLQALADN------------------------------------GITKMSLRNVGV 81
Query: 632 DHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHI 691
D++++ + K G ++ +V S + +AE+ A + R+ + + + +
Sbjct: 82 DNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAP--T 139
Query: 692 IGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738
IG + VG+VG G+IG ++++ F +K++ E
Sbjct: 140 IGREVRDQ---VVGVVGTGHIGQVFMQIMEGFG-AKVITYDIFRNPE 182
Score = 69.2 bits (170), Expect = 2e-12
Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 9/101 (8%)
Query: 75 IEKLKGCSALLCNPHQKVDKEVLDR-SGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVG 133
+ KG ++ E L + + ++ +VG D++ + + K G ++ V
Sbjct: 41 VALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVP 100
Query: 134 PVSSDTVAEYNIGLAIAVSRRFQQ------RHNWIARLSSF 168
S + +AE+ A + R+ + RH+ R +
Sbjct: 101 VYSPNAIAEHAAIQAARILRQDKAMDEKVARHDL--RWAPT 139
Score = 46.1 bits (110), Expect = 5e-05
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 807 YHGTINGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAF 854
+ IG + VG+VG G+IG ++++ F
Sbjct: 126 DEKVARHDLRWAP--TIGREVRDQ---VVGVVGTGHIGQVFMQIMEGF 168
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 217 bits (555), Expect = 3e-63
Identities = 68/269 (25%), Positives = 119/269 (44%), Gaps = 23/269 (8%)
Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934
+K +T +VG D++++ +K GIR+ +V S +AE+ + + + R + + +
Sbjct: 68 GIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQL 127
Query: 935 TSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 992
+G++ +G L TVG++G G+IG KL K F I Y
Sbjct: 128 QAGDYEKA------GTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYD--PYPM 179
Query: 993 EGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052
+G V L+ L +SD I + + +I F+LMKP AI++NT+R L+D
Sbjct: 180 KGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLID 239
Query: 1053 QEALVEFLKDKKIGGAGLDVMIPEPL-------------PADHPLVQLDNCVLTPHTSSA 1099
+A++ LK K+ G G+D E P L+ + N VL+PH +
Sbjct: 240 TQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY 299
Query: 1100 TKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128
T+ S ++++ E+
Sbjct: 300 TETAVHNMVYFSLQHLVDFLTKGETSTEV 328
Score = 118 bits (299), Expect = 3e-29
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
Query: 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365
V L+ L +SD I + + +I F+LMKP AI+INT+R L+D +A
Sbjct: 183 HPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQA 242
Query: 366 LVEFLKDKKIGGAGLDVMIPEPL-------------PADHPLVQLDN 399
++ LK K+ G G+D E P L+ + N
Sbjct: 243 MLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPN 289
Score = 91.1 bits (227), Expect = 8e-20
Identities = 38/219 (17%), Positives = 78/219 (35%), Gaps = 51/219 (23%)
Query: 514 KPKLFLTRDDYSRVPAFEILGEMFDI-ITYPASEGQIPRDIFIEKLRGCSALLCTSRDRV 572
K + R D + F+ + + Y + + +E +G +
Sbjct: 2 KIIAYGARVD--EIQYFKQWAKDTGNTLEY--HTEFLDENT-VEWAKGFDGINSLQTTPY 56
Query: 573 DKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYD 632
V ++ Y +K +T +VG D
Sbjct: 57 AAGVFEKMHAY------------------------------------GIKFLTIRNVGTD 80
Query: 633 HLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHII 692
++++ +K GIR+ +V S +AE+ + + + R + + + +G++
Sbjct: 81 NIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKA----- 135
Query: 693 GPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKIL 729
+G L TVG++G G+IG KL K F +K++
Sbjct: 136 -GTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFG-AKVI 172
Score = 68.0 bits (167), Expect = 4e-12
Identities = 17/123 (13%), Positives = 46/123 (37%), Gaps = 11/123 (8%)
Query: 46 ESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDR-SGENL 104
+ + ++ ++ + + + +E KG + V ++ +
Sbjct: 14 QYFKQWAKDTGNTLEYH---TEFLDENT-VEWAKGFDGINSLQTTPYAAGVFEKMHAYGI 69
Query: 105 KVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQ------R 158
K + +VG D++ + +K GIR+ V S +AE+ + + + R +
Sbjct: 70 KFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQA 129
Query: 159 HNW 161
++
Sbjct: 130 GDY 132
Score = 47.2 bits (113), Expect = 2e-05
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
Query: 807 YHGTINGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKIL 860
G++ +G L TVG++G G+IG KL K F +K++
Sbjct: 124 QAQLQAGDYEKA------GTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFG-AKVI 172
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 213 bits (546), Expect = 3e-62
Identities = 73/256 (28%), Positives = 124/256 (48%), Gaps = 13/256 (5%)
Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933
+ LK+I +G D+++ E + R I+V S+D+ E IGL IA +R+
Sbjct: 67 KKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMAL 126
Query: 934 ITSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK 991
SG + I G L G T+GIVG G IG + + A + + Y ++
Sbjct: 127 AKSGIF---------KKIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIR 177
Query: 992 EEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLL 1051
E+ + A+ V L+ L SD I + ++KD + +I QF LMK I+VNTSR +
Sbjct: 178 EKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAV 237
Query: 1052 DQEALVEFLKDKKIGGAGLDVMIPEPLPADH--PLVQLDNCVLTPHTSSATKAVRDEKSS 1109
+ +AL++++K K+ DV EP + L++ + ++T H + TK + +
Sbjct: 238 NGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKRVAE 297
Query: 1110 TSAENIIRGYKGEPMI 1125
+ +N++ K MI
Sbjct: 298 MTTQNLLNAMKELGMI 313
Score = 124 bits (314), Expect = 2e-31
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 304 GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQ 363
+ A+ V L+ L SD I + ++KD + +I QF LMK I++NTSR ++
Sbjct: 180 AEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNG 239
Query: 364 EALVEFLKDKKIGGAGLDVMIPEPLPADH--PLVQLDN 399
+AL++++K K+ DV EP + L++ +
Sbjct: 240 KALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHER 277
Score = 80.7 bits (200), Expect = 2e-16
Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 54/205 (26%)
Query: 529 AFEILGEM-FDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTE 587
+ L E + P +I ++ + + ++ SR +V K V+++
Sbjct: 18 LIKTLREKGIQVDYMP----EISKEELLNIIGNYDIIVVRSRTKVTKDVIEKG------- 66
Query: 588 DFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVG 647
K LK+I +G D+++ E + R I+V
Sbjct: 67 -------------------------------KKLKIIARAGIGLDNIDTEEAEKRNIKVV 95
Query: 648 SVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG--LKGATVG 705
S+D+ E IGL IA +R+ SG + I G L G T+G
Sbjct: 96 YAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIF---------KKIEGLELAGKTIG 146
Query: 706 IVGLGNIGLETAKLLKAFKVSKILY 730
IVG G IG + + A + + Y
Sbjct: 147 IVGFGRIGTKVGIIANAMGMKVLAY 171
Score = 63.4 bits (155), Expect = 8e-11
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 11/125 (8%)
Query: 41 RLLVPESLSK-----LRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKE 95
+ L+ + + + LR +D P + ++ + + ++ KV K+
Sbjct: 7 KALITDPIDEILIKTLR-EKGIQVDYMP----EISKEELLNIIGNYDIIVVRSRTKVTKD 61
Query: 96 VLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRF 155
V++ G+ LK+IA +G D++ +E + R I+V S+D+ E IGL IA +R+
Sbjct: 62 VIE-KGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKM 120
Query: 156 QQRHN 160
Sbjct: 121 YTSMA 125
Score = 43.3 bits (103), Expect = 2e-04
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 11/52 (21%)
Query: 812 NGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILY 861
+G + I G L G T+GIVG G IG + + A + + Y
Sbjct: 129 SGIF---------KKIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAY 171
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 210 bits (538), Expect = 7e-61
Identities = 76/252 (30%), Positives = 122/252 (48%), Gaps = 10/252 (3%)
Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933
E L+V+ G D+++L +GI V + + +S + AE G+ + ++R+ +
Sbjct: 88 EKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATAS 147
Query: 934 ITSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK 991
+ G+W K+ MG L G T+GI+GLG IG E A +++F + I Y
Sbjct: 148 MKDGKWERKK-------FMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP 200
Query: 992 EEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLL 1051
E + G Q +PL+ + DFI V L T L+ F+ K +VN +RGG++
Sbjct: 201 EVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIV 260
Query: 1052 DQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111
D+ AL+ L+ + GA LDV EP P D LV +N + PH ++TK +
Sbjct: 261 DEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHENVISCPHLGASTKEAQSRCGEEI 319
Query: 1112 AENIIRGYKGEP 1123
A + KG+
Sbjct: 320 AVQFVDMVKGKS 331
Score = 127 bits (321), Expect = 4e-32
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 305 TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQE 364
+ G Q +PL+ + DFI V L T L+ F+ K ++N +RGG++D+
Sbjct: 204 ASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEG 263
Query: 365 ALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399
AL+ L+ + GA LDV EP P D LV +N
Sbjct: 264 ALLRALQSGQCAGAALDVFTEEP-PRDRALVDHEN 297
Score = 78.4 bits (194), Expect = 1e-15
Identities = 43/218 (19%), Positives = 84/218 (38%), Gaps = 56/218 (25%)
Query: 529 AFEILGEM-FDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTE 587
+IL + ++ + ++ I +L+ C L+ S +V V++ +
Sbjct: 39 CRKILQDGGLQVVEKQ----NLSKEELIAELQDCEGLIVRSATKVTADVINAA------- 87
Query: 588 DFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVG 647
+ L+V+ G D+++L +GI V
Sbjct: 88 -------------------------------EKLQVVGRAGTGVDNVDLEAATRKGILVM 116
Query: 648 SVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG--LKGATVG 705
+ + +S + AE G+ + ++R+ + + G+W K+ MG L G T+G
Sbjct: 117 NTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKK-------FMGTELNGKTLG 169
Query: 706 IVGLGNIGLETAKLLKAFKVSKILY----TSRRVKEEG 739
I+GLG IG E A +++F + I Y + G
Sbjct: 170 ILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFG 207
Score = 58.8 bits (143), Expect = 4e-09
Identities = 26/125 (20%), Positives = 56/125 (44%), Gaps = 11/125 (8%)
Query: 41 RLLVPESLSK-----LRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKE 95
++L+ +SL L+ + + + ++ I +L+ C L+ KV +
Sbjct: 28 KVLISDSLDPCCRKILQ-DGGLQVVEKQ----NLSKEELIAELQDCEGLIVRSATKVTAD 82
Query: 96 VLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRF 155
V++ + E L+V+ G D++ L+ +GI V +S + AE G+ + ++R+
Sbjct: 83 VIN-AAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQI 141
Query: 156 QQRHN 160
Q
Sbjct: 142 PQATA 146
Score = 45.7 bits (109), Expect = 5e-05
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 9/52 (17%)
Query: 812 NGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILY 861
+G+W K+ MG L G T+GI+GLG IG E A +++F + I Y
Sbjct: 150 DGKWERKK-------FMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGY 194
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 209 bits (535), Expect = 1e-60
Identities = 64/263 (24%), Positives = 107/263 (40%), Gaps = 20/263 (7%)
Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934
+K I T + G DH++ K G + V S + +AE + A+ + R
Sbjct: 69 GVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRT 128
Query: 935 TSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG 994
+ + + ++ TVG+VGLG IG A++ + I + +G
Sbjct: 129 AKKNFKVDA-FMFSKE---VRNCTVGVVGLGRIGRVAAQIFHGMGATVIGED--VFEIKG 182
Query: 995 TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQE 1054
V LD + +SD I + K+ ++ R MK AILVN +RG L+D E
Sbjct: 183 IEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTE 242
Query: 1055 ALVEFLKDKKIGGAGLDVMIPEP---------LPADHPLVQ-----LDNCVLTPHTSSAT 1100
A++E ++ K+GG G DV+ E ++PL + ++TPH S T
Sbjct: 243 AVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYT 302
Query: 1101 KAVRDEKSSTSAENIIRGYKGEP 1123
S +N+ +
Sbjct: 303 DEAVKNMVEVSYQNLKDLAETGD 325
Score = 116 bits (294), Expect = 1e-28
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365
V LD + +SD I + K+ ++ R MK AIL+N +RG L+D EA
Sbjct: 184 EDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEA 243
Query: 366 LVEFLKDKKIGGAGLDVMIPEP--LPADHPLVQLDN 399
++E ++ K+GG G DV+ E D +L+N
Sbjct: 244 VIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLEN 279
Score = 90.4 bits (225), Expect = 1e-19
Identities = 44/236 (18%), Positives = 77/236 (32%), Gaps = 50/236 (21%)
Query: 514 KPKLFLTRDDYSRVPAFEILGEMFDI-ITYPASEGQIPRDIFIEKLRGCSALLCTSRDRV 572
K + RD +P FE + F I + E G A++
Sbjct: 2 KVLCYGVRDV--ELPIFEACNKEFGYDIKC--VPDYLNTKETAEMAAGFDAVILRGNCFA 57
Query: 573 DKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYD 632
+KQ LD + LGV K I T + G D
Sbjct: 58 NKQNLDI--------------YKK---------------LGV-------KYILTRTAGTD 81
Query: 633 HLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHII 692
H++ K G + V S + +AE + A+ + R + + +
Sbjct: 82 HIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDA-FMF 140
Query: 693 GPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKIL----YTSRRVKEEGQLFSL 744
++ TVG+VGLG IG A++ + ++ + + +++ SL
Sbjct: 141 SKE---VRNCTVGVVGLGRIGRVAAQIFHGMG-ATVIGEDVFEIKGIEDYCTQVSL 192
Score = 66.1 bits (162), Expect = 1e-11
Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 10/123 (8%)
Query: 46 ESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGEN-L 104
+DI + E G A++ + +K+ LD + +
Sbjct: 14 PIFEACNKEFGYDIKCV---PDYLNTKETAEMAAGFDAVILRGNCFANKQNLDIYKKLGV 70
Query: 105 KVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQ------R 158
K I T + G DH+ + K G + V S + +AE + A+ + R +
Sbjct: 71 KYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAK 130
Query: 159 HNW 161
N+
Sbjct: 131 KNF 133
Score = 45.7 bits (109), Expect = 5e-05
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 807 YHGTINGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAF 854
T + + + ++ TVG+VGLG IG A++
Sbjct: 125 TSRTAKKNFKVDA-FMFSKE---VRNCTVGVVGLGRIGRVAAQIFHGM 168
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 207 bits (528), Expect = 2e-57
Identities = 79/252 (31%), Positives = 121/252 (48%), Gaps = 10/252 (3%)
Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933
LK++ VG D++++ ARG+ V + + + AE+ + L +A SR+
Sbjct: 65 PKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADAS 124
Query: 934 ITSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK 991
+ W G + G TVG+VGLG IG A+ + AF + Y
Sbjct: 125 LREHTWKRSS-------FSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP 177
Query: 992 EEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLL 1051
LG +L+ LD L A +DFI V T +T LI ++ + KP I+VN +RGGL+
Sbjct: 178 ARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLV 237
Query: 1052 DQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111
D+ AL + + + AGLDV EP D PL +L V+TPH ++T +D +
Sbjct: 238 DEAALADAITGGHVRAAGLDVFATEP-CTDSPLFELAQVVVTPHLGASTAEAQDRAGTDV 296
Query: 1112 AENIIRGYKGEP 1123
AE++ GE
Sbjct: 297 AESVRLALAGEF 308
Score = 121 bits (305), Expect = 1e-28
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 305 TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQE 364
LG +L+ LD L A +DFI V T +T LI ++ + KP I++N +RGGL+D+
Sbjct: 181 AQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEA 240
Query: 365 ALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399
AL + + + AGLDV EP D PL +L
Sbjct: 241 ALADAITGGHVRAAGLDVFATEP-CTDSPLFELAQ 274
Score = 89.3 bits (222), Expect = 2e-18
Identities = 46/230 (20%), Positives = 79/230 (34%), Gaps = 54/230 (23%)
Query: 511 IMSKPKLFLTRDDYSRVPAFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRD 570
++S P + + D + LG+ ++ RD + + ALL S
Sbjct: 1 MVSLPVVLIA-DKLAPS-TVAALGDQVEVRWVDG----PDRDKLLAAVPEADALLVRSAT 54
Query: 571 RVDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVG 630
VD +VL + LK++ VG
Sbjct: 55 TVDAEVLAAA--------------------------------------PKLKIVARAGVG 76
Query: 631 YDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTH 690
D++++ ARG+ V + + + AE+ + L +A SR+ + W
Sbjct: 77 LDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSS-- 134
Query: 691 IIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738
G + G TVG+VGLG IG A+ + AF ++ V
Sbjct: 135 -----FSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYVSPA 178
Score = 62.7 bits (153), Expect = 4e-10
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 8/123 (6%)
Query: 41 RLLVPESLSKL---RFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVL 97
+L+ + L+ + ++ RD + + ALL VD EVL
Sbjct: 6 VVLIADKLAPSTVAALGDQVEVRWVD----GPDRDKLLAAVPEADALLVRSATTVDAEVL 61
Query: 98 DRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQ 157
LK++A VG D++ +D +RG+ V + + AE+ + L +A SR+
Sbjct: 62 AA-APKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPA 120
Query: 158 RHN 160
Sbjct: 121 ADA 123
Score = 45.4 bits (108), Expect = 1e-04
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 9/52 (17%)
Query: 812 NGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILY 861
W G + G TVG+VGLG IG A+ + AF + Y
Sbjct: 127 EHTWKRSS-------FSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAY 171
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural
genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 199 bits (508), Expect = 4e-57
Identities = 78/256 (30%), Positives = 117/256 (45%), Gaps = 12/256 (4%)
Query: 871 KRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEG 930
+ L + G D L L R ++ +V I ++EY G +++ R+
Sbjct: 63 AKANKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLY 121
Query: 931 RKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV 990
R+ W GLKG T+ I+G G+IG A K F + K+L SR
Sbjct: 122 REQQKQRLWQSHPYQ-------GLKGRTLLILGTGSIGQHIAHTGKHFGM-KVLGVSRSG 173
Query: 991 KE-EGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGG 1049
+E G QL L+ + A++D I T++T L +F KP AIL N RG
Sbjct: 174 RERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGN 233
Query: 1050 LLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSS 1109
+++ L+ L+ K+G A LDV EPLPAD PL N ++TPH S+ + D+ +
Sbjct: 234 AINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYS--FPDDVAQ 291
Query: 1110 TSAENIIRGYKGEPMI 1125
N IR G+P+
Sbjct: 292 IFVRNYIRFIDGQPLD 307
Score = 116 bits (293), Expect = 2e-28
Identities = 33/87 (37%), Positives = 46/87 (52%)
Query: 314 LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDK 373
L+ + A++D I T++T L +F KP AIL N RG +++ L+ L+
Sbjct: 188 LNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTG 247
Query: 374 KIGGAGLDVMIPEPLPADHPLVQLDNC 400
K+G A LDV EPLPAD PL N
Sbjct: 248 KLGMAVLDVFEQEPLPADSPLWGQPNL 274
Score = 72.3 bits (178), Expect = 1e-13
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 9/119 (7%)
Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678
L + G D L L R ++ +V I ++EY G +++ R+ R+
Sbjct: 66 NKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQ 124
Query: 679 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 737
W GLKG T+ I+G G+IG A K F + K+L SR +E
Sbjct: 125 QKQRLWQSHPYQ-------GLKGRTLLILGTGSIGQHIAHTGKHFGM-KVLGVSRSGRE 175
Score = 49.2 bits (118), Expect = 4e-06
Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Query: 76 EKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPV 135
+ + L+ P K +L + L + G D L LD R ++ V +
Sbjct: 43 KLIGEAHILMAEP--ARAKPLLAK-ANKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGI 98
Query: 136 SSDTVAEYNIGLAIAVSRRF------QQRHNW 161
++EY G +++ R+ Q++ W
Sbjct: 99 FGPLMSEYVFGHLLSLMRQLPLYREQQKQRLW 130
Score = 43.8 bits (104), Expect = 2e-04
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 830 LKGATVGIVGLGNIGLETAKLLKAF 854
LKG T+ I+G G+IG A K F
Sbjct: 138 LKGRTLLILGTGSIGQHIAHTGKHF 162
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 189 bits (482), Expect = 1e-53
Identities = 57/260 (21%), Positives = 98/260 (37%), Gaps = 17/260 (6%)
Query: 875 NLKVITTFSVGYDHL-----ELHEIKARGIR-VGSVGHISSDTVAEYNIGLAIAVSRRFQ 928
LK + G D + E+ I + EY + + RRF
Sbjct: 59 RLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFD 118
Query: 929 EGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 988
+ + W + + +VGI+G G +G + A+ L+A+ + SR
Sbjct: 119 DYQALKNQALWKPLPEY-------TREEFSVGIMGAGVLGAKVAESLQAWGF-PLRCWSR 170
Query: 989 RVKE-EGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSR 1047
K G L ++ + T T +I + + A ++N +R
Sbjct: 171 SRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLAR 230
Query: 1048 GGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEK 1107
G + + L+ L K+ GA LDV EPLP + PL + +TPH ++ T+ E
Sbjct: 231 GVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVTR--PAEA 288
Query: 1108 SSTSAENIIRGYKGEPMIYE 1127
+ I + KGEP+ +
Sbjct: 289 IDYISRTITQLEKGEPVTGQ 308
Score = 113 bits (285), Expect = 1e-27
Identities = 22/86 (25%), Positives = 37/86 (43%)
Query: 314 LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDK 373
L ++ + T T +I + + A ++N +RG + + L+ L
Sbjct: 187 LRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSG 246
Query: 374 KIGGAGLDVMIPEPLPADHPLVQLDN 399
K+ GA LDV EPLP + PL +
Sbjct: 247 KLKGAMLDVFSQEPLPQESPLWRHPR 272
Score = 63.9 bits (156), Expect = 6e-11
Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 14/125 (11%)
Query: 619 KNLKVITTFSVGYDHL-----ELHEIKARGIR-VGSVGHISSDTVAEYNIGLAIAVSRRF 672
+ LK + G D + E+ I + EY + + RRF
Sbjct: 58 RRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRF 117
Query: 673 QEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTS 732
+ + W + + +VGI+G G +G + A+ L+A+ + S
Sbjct: 118 DDYQALKNQALWKPLPEY-------TREEFSVGIMGAGVLGAKVAESLQAWGF-PLRCWS 169
Query: 733 RRVKE 737
R K
Sbjct: 170 RSRKS 174
Score = 42.7 bits (101), Expect = 4e-04
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 830 LKGATVGIVGLGNIGLETAKLLKAF 854
+ +VGI+G G +G + A+ L+A+
Sbjct: 137 REEFSVGIMGAGVLGAKVAESLQAW 161
Score = 38.8 bits (91), Expect = 0.008
Identities = 11/73 (15%), Positives = 19/73 (26%), Gaps = 12/73 (16%)
Query: 101 GENLKVIATFSVGHDHLHLDEIKSRGIR------VGTVGPVSSDTVAEYNIGLAIAVSRR 154
G LK + G D + + + EY + + RR
Sbjct: 57 GRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRR 116
Query: 155 F------QQRHNW 161
F + + W
Sbjct: 117 FDDYQALKNQALW 129
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET:
NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1
d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A*
2p9g_A*
Length = 404
Score = 185 bits (473), Expect = 2e-51
Identities = 73/281 (25%), Positives = 118/281 (41%), Gaps = 30/281 (10%)
Query: 830 LKGATVGIVGLGNIGLETAKLLKAFK-VSKILYTSRNKV--KTPKRTENLKVITTFSVGY 886
L+ A + L+ +L ++ + I SR + E L I F++G
Sbjct: 21 LRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGT 80
Query: 887 DHLELHEIKARGIRV----GSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALK 942
+ ++L RGI V S ++ +VAE IG + + R E G
Sbjct: 81 NQVDLDAAAKRGIPVFNAPFS----NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKL 136
Query: 943 QTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILY--TSRRVKEEGTALG 998
+G +GI+G G+IG + L ++ + Y ++
Sbjct: 137 AA-------GSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLG----NA 185
Query: 999 AQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVE 1058
Q+ L L SD + + T+ ++G K+ SLMKP ++L+N SRG ++D AL +
Sbjct: 186 TQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALAD 245
Query: 1059 FLKDKKIGGAGLDVMIPEPL----PADHPLVQLDNCVLTPH 1095
L K + GA +DV EP P PL + DN +LTPH
Sbjct: 246 ALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPH 286
Score = 115 bits (291), Expect = 1e-27
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365
Q+ L L SD + + T+ ++G K+ SLMKP ++LIN SRG ++D A
Sbjct: 183 GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPA 242
Query: 366 LVEFLKDKKIGGAGLDVMIPEPL----PADHPLVQLDN 399
L + L K + GA +DV EP P PL + DN
Sbjct: 243 LADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDN 280
Score = 68.4 bits (168), Expect = 5e-12
Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 55/191 (28%)
Query: 546 EGQIPRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRH 605
+G + + E +R + SR + + V++ +
Sbjct: 33 KGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAA------------------------- 67
Query: 606 VNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRV----GSVGHISSDTVAEYN 661
+ L I F++G + ++L RGI V S ++ +VAE
Sbjct: 68 -------------EKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFS----NTRSVAELV 110
Query: 662 IGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKL 719
IG + + R E G +G +GI+G G+IG + L
Sbjct: 111 IGELLLLLRGVPEANAKAHRGVGNKLAA-------GSFEARGKKLGIIGYGHIGTQLGIL 163
Query: 720 LKAFKVSKILY 730
++ + Y
Sbjct: 164 AESLGMYVYFY 174
Score = 58.0 bits (141), Expect = 9e-09
Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 13/126 (10%)
Query: 41 RLLVPESLSK-----LRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKE 95
+ L+ E + + LR +I+ + + + + E ++ + + ++
Sbjct: 6 KFLLVEGVHQKALESLRAAGYTNIEFHKGA---LDDEQLKESIRDAHFIGLRSRTHLTED 62
Query: 96 VLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTV-GPVS-SDTVAEYNIGLAIAVSR 153
V++ + E L I F++G + + LD RGI V P S + +VAE IG + + R
Sbjct: 63 VIN-AAEKLVAIGAFAIGTNQVDLDAAAKRGIPV--FNAPFSNTRSVAELVIGELLLLLR 119
Query: 154 RFQQRH 159
+ +
Sbjct: 120 GVPEAN 125
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural
genomics center for infect disease, brucellosis; 2.15A
{Brucella melitensis biovar abortus}
Length = 416
Score = 182 bits (464), Expect = 4e-50
Identities = 80/281 (28%), Positives = 121/281 (43%), Gaps = 30/281 (10%)
Query: 830 LKGATVGIVGLGNIGLETAKLLKAFK-VSKILYTSRNKVKTPK---RTENLKVITTFSVG 885
K + V L+ A L+KA I SR ++ T + L + FSVG
Sbjct: 32 FKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRTQL-TEEIFAAANRLIAVGCFSVG 90
Query: 886 YDHLELHEIKARGIRV----GSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWAL 941
+ +EL + RGI V S ++ +VAE IG I + RR +G W
Sbjct: 91 TNQVELKAARKRGIPVFNAPFS----NTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEK 146
Query: 942 KQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGA 999
++G T+GIVG GNIG + L ++ ++ Y ++
Sbjct: 147 TAI-------GSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYD---TSDKLQYGNV 196
Query: 1000 QLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVE 1058
+ LD L SD + + +K T +LI + MK A L+N +RG +D EAL +
Sbjct: 197 KPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAK 256
Query: 1059 FLKDKKIGGAGLDVMIPEPL----PADHPLVQLDNCVLTPH 1095
L++ + GA +DV EP PL L+N +LTPH
Sbjct: 257 VLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPH 297
Score = 112 bits (283), Expect = 2e-26
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 307 LGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365
+ LD L SD + + +K T +LI + MK A LIN +RG +D EA
Sbjct: 194 GNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEA 253
Query: 366 LVEFLKDKKIGGAGLDVMIPEPL----PADHPLVQLDN 399
L + L++ + GA +DV EP PL L+N
Sbjct: 254 LAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLEN 291
Score = 69.2 bits (170), Expect = 3e-12
Identities = 40/209 (19%), Positives = 71/209 (33%), Gaps = 58/209 (27%)
Query: 529 AFEILGEM-FDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTE 587
A E + +T+ + + I+ + + SR ++ +++ +
Sbjct: 28 AVEYFKSSGYTNVTHL--PKALDKADLIKAISSAHIIGIRSRTQLTEEIFAAA------- 78
Query: 588 DFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRV- 646
L + FSVG + +EL + RGI V
Sbjct: 79 -------------------------------NRLIAVGCFSVGTNQVELKAARKRGIPVF 107
Query: 647 ---GSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG--LKG 701
S ++ +VAE IG I + RR +G W ++G
Sbjct: 108 NAPFS----NTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAI-------GSREVRG 156
Query: 702 ATVGIVGLGNIGLETAKLLKAFKVSKILY 730
T+GIVG GNIG + L ++ ++ Y
Sbjct: 157 KTLGIVGYGNIGSQVGNLAESLGMTVRYY 185
Score = 60.3 bits (147), Expect = 2e-09
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 13/133 (9%)
Query: 34 SFSRQGSRLLVPESLSK-----LRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNP 88
S SR +L+ E +S+ + + ++ P + + + I+ + +
Sbjct: 10 SLSRDRINVLLLEGISQTAVEYFKSSGYTNVTHLPKA---LDKADLIKAISSAHIIGIRS 66
Query: 89 HQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTV-GPVS-SDTVAEYNIG 146
++ +E+ L + FSVG + + L + RGI V P S + +VAE IG
Sbjct: 67 RTQLTEEIFAA-ANRLIAVGCFSVGTNQVELKAARKRGIPV--FNAPFSNTRSVAELVIG 123
Query: 147 LAIAVSRRFQQRH 159
I + RR R
Sbjct: 124 EIIMLMRRIFPRS 136
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 178 bits (454), Expect = 3e-49
Identities = 55/227 (24%), Positives = 87/227 (38%), Gaps = 36/227 (15%)
Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934
+ + T + G DH++ +K GI + ++ V EY + ++ R
Sbjct: 61 PINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAER-------- 112
Query: 935 TSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 992
G L+ T+GIVG+GN+G L+A + +L R
Sbjct: 113 -----------------DGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAAR 155
Query: 993 EGTALGAQLVPLDTLCAESDFIFVTCALTKD----TEQLIGRKQFSLMKPTAILVNTSRG 1048
LD L E+D + L KD T L +KP AIL+N RG
Sbjct: 156 G---DEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRG 212
Query: 1049 GLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPH 1095
++D AL+ L + LDV EP + L++ + + T H
Sbjct: 213 PVVDNAALLARLNAGQPLSVVLDVWEGEP-DLNVALLEAVD-IGTSH 257
Score = 110 bits (276), Expect = 8e-26
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 7/105 (6%)
Query: 299 FERSNGTALGAQLVPLDTLCAESDFIFVTCALTKD----TEQLIGRKQFSLMKPTAILIN 354
+ G LD L E+D + L KD T L +KP AILIN
Sbjct: 151 PRAARG--DEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILIN 208
Query: 355 TSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399
RG ++D AL+ L + LDV EP + L++ +
Sbjct: 209 ACRGPVVDNAALLARLNAGQPLSVVLDVWEGEP-DLNVALLEAVD 252
Score = 88.1 bits (219), Expect = 2e-18
Identities = 36/204 (17%), Positives = 67/204 (32%), Gaps = 72/204 (35%)
Query: 529 AFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTED 588
A E+ + ++ P R I +E+L AL+ S +V++ +L +
Sbjct: 15 ARELFSRLGEVKAVP------GRPIPVEELNHADALMVRSVTKVNESLLSGT-------- 60
Query: 589 FFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGS 648
+ + T + G DH++ +K GI +
Sbjct: 61 -------------------------------PINFVGTATAGTDHVDEAWLKQAGIGFSA 89
Query: 649 VGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG--LKGATVGI 706
++ V EY + ++ R G L+ T+GI
Sbjct: 90 APGCNAIAVVEYVFSALLMLAER-------------------------DGFSLRDRTIGI 124
Query: 707 VGLGNIGLETAKLLKAFKVSKILY 730
VG+GN+G L+A + +L
Sbjct: 125 VGVGNVGSRLQTRLEALGIRTLLC 148
Score = 69.6 bits (171), Expect = 2e-12
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 10/116 (8%)
Query: 41 RLLVPESLSKLR--FNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLD 98
++LV E++ R F+ ++ P R I +E+L AL+ KV++ +L
Sbjct: 5 KILVDENMPYARELFSRLGEVKAVP------GRPIPVEELNHADALMVRSVTKVNESLLS 58
Query: 99 RSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRR 154
G + + T + G DH+ +K GI ++ V EY + ++ R
Sbjct: 59 --GTPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAER 112
Score = 46.1 bits (110), Expect = 5e-05
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 830 LKGATVGIVGLGNIGLETAKLLKAFKVSKILY 861
L+ T+GIVG+GN+G L+A + +L
Sbjct: 117 LRDRTIGIVGVGNVGSRLQTRLEALGIRTLLC 148
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 178 bits (453), Expect = 4e-49
Identities = 55/227 (24%), Positives = 91/227 (40%), Gaps = 36/227 (15%)
Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934
++ + T ++G DHL+L GI S ++ V +Y +G +A++
Sbjct: 58 PVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEV-------- 109
Query: 935 TSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 992
G L T G+VG G +G ++L+ ++ R
Sbjct: 110 -----------------RGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR 152
Query: 993 EGTALGAQLVPLDTLCAESDFIFVTCALTKD----TEQLIGRKQFSLMKPTAILVNTSRG 1048
E + V L+ L AE+D I + L +D T L+ + + ++P LVN SRG
Sbjct: 153 E---PDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRG 209
Query: 1049 GLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPH 1095
++D +AL L+ LDV E P P + + TPH
Sbjct: 210 AVVDNQALRRLLEGGADLEVALDVWEGE--PQADPELAARCLIATPH 254
Score = 105 bits (263), Expect = 3e-24
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
Query: 299 FERSNGTALGAQLVPLDTLCAESDFIFVTCALTKD----TEQLIGRKQFSLMKPTAILIN 354
++ + V L+ L AE+D I + L +D T L+ + + ++P L+N
Sbjct: 148 PRQARE--PDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVN 205
Query: 355 TSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399
SRG ++D +AL L+ LDV E P P +
Sbjct: 206 ASRGAVVDNQALRRLLEGGADLEVALDVWEGE--PQADPELAARC 248
Score = 87.0 bits (216), Expect = 3e-18
Identities = 33/204 (16%), Positives = 55/204 (26%), Gaps = 72/204 (35%)
Query: 529 AFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTED 588
+ I P R I L LL S V + L S
Sbjct: 12 VDAFFADQGSIRRLP------GRAIDRAALAEVDVLLVRSVTEVSRAALAGS-------- 57
Query: 589 FFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGS 648
++ + T ++G DHL+L GI S
Sbjct: 58 -------------------------------PVRFVGTCTIGTDHLDLDYFAEAGIAWSS 86
Query: 649 VGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG--LKGATVGI 706
++ V +Y +G +A++ G L T G+
Sbjct: 87 APGCNARGVVDYVLGCLLAMAEV-------------------------RGADLAERTYGV 121
Query: 707 VGLGNIGLETAKLLKAFKVSKILY 730
VG G +G ++L+ ++
Sbjct: 122 VGAGQVGGRLVEVLRGLGWKVLVC 145
Score = 65.8 bits (161), Expect = 3e-11
Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 10/116 (8%)
Query: 41 RLLVPESLSKLR--FNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLD 98
R+L E++ + F + I P R I L LL +V + L
Sbjct: 2 RILADENIPVVDAFFADQGSIRRLP------GRAIDRAALAEVDVLLVRSVTEVSRAALA 55
Query: 99 RSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRR 154
G ++ + T ++G DHL LD GI + ++ V +Y +G +A++
Sbjct: 56 --GSPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEV 109
Score = 47.3 bits (113), Expect = 2e-05
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 830 LKGATVGIVGLGNIGLETAKLLKAFKVSKILY 861
L T G+VG G +G ++L+ ++
Sbjct: 114 LAERTYGVVGAGQVGGRLVEVLRGLGWKVLVC 145
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 97.4 bits (242), Expect = 2e-20
Identities = 125/677 (18%), Positives = 197/677 (29%), Gaps = 249/677 (36%)
Query: 339 GRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPA----DHPL 394
G + L+ PTA S+ L +Q F K +PEP D P
Sbjct: 14 GSLEHVLLVPTASFFIASQ--LQEQ-----FNKI-----------LPEPTEGFAADDEPT 55
Query: 395 VQLDNCGG-AGLDVMIPEPLPADHPLVQLDNCEEFFEE--LFDKNFQSIDPPGAEPGSGQ 451
+ G G + EP L+ C FE L + ++
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL---------AA 106
Query: 452 NLATTSKSCILKDKTLPR--ISASHLL--PFKKYSGVPRLFERSTPTQKAFIFHLLYFFH 507
L + + ++K K L + I+A + PF K S LF R+ A
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN-SALF-RAVGEGNA---------- 154
Query: 508 NFKIMSKPKLFL------TRDDYSRVPAFEILGEMFDIITYPASEGQIPRDIFIEKLRGC 561
+L DDY FE L +++ TY + D I+
Sbjct: 155 --------QLVAIFGGQGNTDDY-----FEELRDLYQ--TYHV----LVGD-LIKF---S 191
Query: 562 SALLCT-SRDRVDKQVLDESGGYRCTEDFF--GLDLDQMFRNPSKRHVNIETVLG--VSF 616
+ L R +D E F GL++ + NPS + + +L +S
Sbjct: 192 AETLSELIRTTLD------------AEKVFTQGLNILEWLENPSNTP-DKDYLLSIPISC 238
Query: 617 -LIKNLK----VITTFSVGYDHLELHEIKARGIRVGSVGHI----------SSDTVAEY- 660
LI ++ V+T +G+ EL R G+ GH +D+ +
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGEL-----RSYLKGATGHSQGLVTAVAIAETDSWESFF 293
Query: 661 -NIGLAIAVS----RRFQEG-----------RKCITSGE----WAL-------------- 686
++ AI V R E + + E L
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 687 ----------KQTHI---IGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733
KQ I G + + G + GL N+ L AK S+I ++ R
Sbjct: 354 NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGL-NLTLRKAKAPSGLDQSRIPFSER 412
Query: 734 RVKEEGQLFSLVYD-----F-CRY--SIGGVTIKRLVKKTFILSFGGLVVTVLHVHIG-D 784
++K FS + F + K LVK + + + V G D
Sbjct: 413 KLK-----FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD 467
Query: 785 LPAESFEDQVQTDGLKTLTELCYHGTINGEW----ALKQTHII--GPNIMGLKGATVGIV 838
L + + + + + W K THI+ GP G G+
Sbjct: 468 L------RVLSGSISERIVDCIIRLPVK--WETTTQFKATHILDFGP------GGASGLG 513
Query: 839 GLGNIGLETAKLLKAFKVSKILYTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARG 898
L T RNK G
Sbjct: 514 VL---------------------THRNK----------------------------DGTG 524
Query: 899 IRVGSVGHISSDTVAEY 915
+RV G + + +Y
Sbjct: 525 VRVIVAGTLDINPDDDY 541
Score = 57.0 bits (137), Expect = 4e-08
Identities = 94/605 (15%), Positives = 188/605 (31%), Gaps = 195/605 (32%)
Query: 134 PVSS-DTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALD---TKFPAKQQNLHN 189
P + + V ++ +G VS + +++ F ++ L + + ++H
Sbjct: 54 PTTPAELVGKF-LGY---VSSLVEP-----SKVGQFDQVLNLCLTEFENCY-LEGNDIHA 103
Query: 190 VKVRL-------FPRKNEICQKY------------STHKAYLLISLKDQKKN-----GSQ 225
+ +L + E+ + Y + L ++ + G Q
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Query: 226 NPKWRMGSKTDTNHYFKAFENSTGAFLSS--EINNSLKGSDIFEFFLGPKKNGSQNPKWR 283
G+ T+ YF+ E L + + L G D+ +F +
Sbjct: 164 ------GN---TDDYFE--E------LRDLYQTYHVLVG-DLIKFSAETLSELIRTT--- 202
Query: 284 MGSKTDTNHYF--GYN---WFERSNGTALGAQL------VPLDTLCAESDFIFVTC-ALT 331
D F G N W E + T L PL + + ++ VT L
Sbjct: 203 ----LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV-VTAKLLG 257
Query: 332 KDTEQLIGRKQFSLMK----PTAILINTSRGG----LLDQEAL-VEFLKDKKIGGAGLDV 382
+L + + TA+ I + + ++A+ V F IG +
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF----IGVRCYEA 313
Query: 383 MIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPA--DHPLVQLDNCEEFFEELFDKNFQSI 440
LP +++ G +P P+ + + Q+ ++ +K +
Sbjct: 314 YPNTSLPPS--ILEDSLENNEG----VPSPMLSISNLTQEQV-------QDYVNKTNSHL 360
Query: 441 DPPGAEPGSGQ---NLATTSKSCILKDKTLPRISASHL-LPFKKYSGVPRLFERSTP-TQ 495
P Q +L +K+ ++ + P S L L +K L + P ++
Sbjct: 361 ------PAGKQVEISLVNGAKNLVV---SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 496 KAFIFHLLYF-----FHNFKIMSKPKLFLTRDDYSRVPAFEILGE--MFDIITYPASEGQ 548
+ F + FH S L PA +++ + + + +++ A + Q
Sbjct: 412 RKLKFSNRFLPVASPFH-----SH---LLV-------PASDLINKDLVKNNVSFNAKDIQ 456
Query: 549 IPRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTEDFFGLDLDQMFRNP------- 601
IP ++ T D D +VL S +E D + R P
Sbjct: 457 IP--VY-----------DT-FDGSDLRVLSGS----ISERIV----DCIIRLPVKWETTT 494
Query: 602 --SKRHVNIE----TVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSD 655
H+ ++ G+ L K G+RV G + +
Sbjct: 495 QFKATHI-LDFGPGGASGLGVLTHRNK-----------------DGTGVRVIVAGTLDIN 536
Query: 656 TVAEY 660
+Y
Sbjct: 537 PDDDY 541
Score = 49.7 bits (118), Expect = 6e-06
Identities = 52/314 (16%), Positives = 93/314 (29%), Gaps = 103/314 (32%)
Query: 729 LYTS----RRVKEEGQLFSLVYDFCRYSIGGVTIKRLVK---KTFILSFGGLVVTVLHVH 781
LY + + V D G +I +V + FGG + +
Sbjct: 1635 LYKTSKAAQDVWNRA-------DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN 1687
Query: 782 IGDLPAESFED------QVQTDGLKTLTELCYHGTINGEWALKQTHIIGPNIMGLKGATV 835
+ E+ D ++ + + T + G L T P + +
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE-KGL--LSATQFTQPALT-----LM 1739
Query: 836 GIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKTPKRTENLKVITTF---SVG-Y----- 886
AF+ K S+ + TF S+G Y
Sbjct: 1740 EKA--------------AFEDLK----SKGLIPADA---------TFAGHSLGEYAALAS 1772
Query: 887 --------DHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGE 938
+E+ + RG+ + + D + N G+ IA++ GR + +
Sbjct: 1773 LADVMSIESLVEV--VFYRGMTMQVA--VPRDELGRSNYGM-IAIN----PGRVAASFSQ 1823
Query: 939 WALKQTHIIGPNIMGLKGATVGIV-----GL-----GNI-GLETA-KLLKAFKVSKI--- 983
AL+ + + G V IV G++ L+T +L K+ KI
Sbjct: 1824 EALQY---VVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDII 1880
Query: 984 -LYTS---RRVKEE 993
L S V+
Sbjct: 1881 ELQKSLSLEEVEGH 1894
Score = 47.7 bits (113), Expect = 3e-05
Identities = 64/350 (18%), Positives = 105/350 (30%), Gaps = 129/350 (36%)
Query: 444 GA-EPGSGQNLATTSKS--CILK--DKTLPRISASHLLPFKKYSGVPRLFERSTPTQKAF 498
G+ E G G +L TSK+ + D H Y + P
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADN--------HFK--DTYGFSILDIVINNPVNLTI 1674
Query: 499 IF-----HLLYFFHNFKIMSKPKLFLTRDDYSRV--PAFEILGEMFDIITYPASEGQI-- 549
F + N+ M +F T D F+ + E T+ + +G +
Sbjct: 1675 HFGGEKGKRIR--ENYSAM----IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 550 -----PRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTEDFF-GLDLDQMFRNPSK 603
P AL + + L +S G + F G
Sbjct: 1729 TQFTQP------------ALTLMEKAAF--EDL-KSKGLIPADATFAG------------ 1761
Query: 604 RHVNIETVLGVSFLIKNLKVITTFSVG-Y-------------DHLELHEIKARGIRVGSV 649
H S+G Y +E+ + RG+ +
Sbjct: 1762 -H----------------------SLGEYAALASLADVMSIESLVEV--VFYRGMTMQVA 1796
Query: 650 GHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIV-- 707
+ D + N G+ IA++ GR + + AL+ + + G V IV
Sbjct: 1797 --VPRDELGRSNYGM-IAIN----PGRVAASFSQEALQY---VVERVGKRTGWLVEIVNY 1846
Query: 708 ---GL-----GNI-GLETA-KLLKAFKVSKI----LYTSRRVKE-EGQLF 742
G++ L+T +L K+ KI L S ++E EG LF
Sbjct: 1847 NVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 43.9 bits (103), Expect = 4e-04
Identities = 73/437 (16%), Positives = 133/437 (30%), Gaps = 131/437 (29%)
Query: 766 FILSFGGL-----VVTVLHVHIGDLPAESFEDQVQ--TDGL------KTLTELC--YHGT 810
LS G L V T L E F + T+G T EL + G
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQL-QEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 811 INGEWALKQTHIIGPNIMGLKGATV----GIVGLGNI--------GLETAKLLKAFKVSK 858
++ +L + +G L + +I L+K ++ K
Sbjct: 68 VS---SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 859 ILYTSRNKVKTPK------------RTENLKVITTF-----SVGY-DHL-ELHEIKARGI 899
T+R K P N +++ F + Y + L +L++ +
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT-YHVL 183
Query: 900 RVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATV 959
VG + S++T++E I + + F +G + EW L+ P+ L +
Sbjct: 184 -VGDLIKFSAETLSEL-IRTTLDAEKVFTQG---LNILEW-LENPSNT-PDKDYLLSIPI 236
Query: 960 -----GIVGLGN-------IGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTL 1007
G++ L + +G +L K G +Q +
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK--------------GATGHSQGLVTAVA 282
Query: 1008 CAESD----FIFVTCALTKDTEQL--IG-RKQ--FSLMKPTAILVNTS------------ 1046
AE+D F ++ K L IG R + ++ S
Sbjct: 283 IAETDSWESFF---VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 1047 --RGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPL-VQL----DNCVLTPHTSS- 1098
L QE + +++ LPA + + L N V++ S
Sbjct: 340 SISN--LTQEQVQDYVNK-----------TNSHLPAGKQVEISLVNGAKNLVVSGPPQSL 386
Query: 1099 --ATKAVRDEKSSTSAE 1113
+R K+ + +
Sbjct: 387 YGLNLTLRKAKAPSGLD 403
Score = 42.0 bits (98), Expect = 0.002
Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 64/169 (37%)
Query: 12 LSVCYVHIEKLLLIVQ--NSHG-------ISSFSRQGSRLLV----PESLS--------- 49
LS+ + E++ V NSH IS + G++ LV P+SL
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN--GAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 50 ----------------KLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVD 93
KL+F++RF PV+ P F S LL ++
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNRFL----PVAS---P---F------HSHLLVPASDLIN 440
Query: 94 KEVLDR----SGENLK--VIATFSVGHDHLHLD-EIKSRGIRVGTVGPV 135
K+++ + ++++ V TF G D L I R + PV
Sbjct: 441 KDLVKNNVSFNAKDIQIPVYDTFD-GSDLRVLSGSISERIVDCIIRLPV 488
Score = 37.3 bits (86), Expect = 0.037
Identities = 54/317 (17%), Positives = 93/317 (29%), Gaps = 113/317 (35%)
Query: 574 KQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDH 633
+ V + + + +D +G + + N N +T G
Sbjct: 1643 QDVWNRADNH--FKDTYGFSILDIVIN-------------------NPVNLTIHFGGE-- 1679
Query: 634 LELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEW-----ALKQ 688
K + IR I V I F+E + TS + L
Sbjct: 1680 ------KGKRIRENYSAMIFETIVDGKLKTEKI-----FKEINEHSTSYTFRSEKGLLSA 1728
Query: 689 THIIGPNIM-------------GLKGATVGIVG--LGNIGLE-TAKLLKAFKVSKILYTS 732
T P + GL A G LG E A L + ++ ++
Sbjct: 1729 TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLG----EYAA--LAS--LADVMSIE 1780
Query: 733 RRVKEEGQLFSLVYDFCRYSIGGVTIKRLVKKTFILSFGGLVVTVLHVHIG----DLPAE 788
L +V F R G+T++ V + G ++ ++ G E
Sbjct: 1781 -------SLVEVV--FYR----GMTMQVAVPRD---ELGRSNYGMIAINPGRVAASFSQE 1824
Query: 789 SFEDQVQTDGLKTLTELC----YHGTINGEWALKQTHIIGPNIMGLKGATVGIVGLGNI- 843
+ + V+ G +T L Y N E Q ++ G++
Sbjct: 1825 ALQYVVERVGKRT-GWLVEIVNY----NVE---NQQYVAA----------------GDLR 1860
Query: 844 GLETA-KLLKAFKVSKI 859
L+T +L K+ KI
Sbjct: 1861 ALDTVTNVLNFIKLQKI 1877
Score = 33.5 bits (76), Expect = 0.58
Identities = 26/134 (19%), Positives = 43/134 (32%), Gaps = 43/134 (32%)
Query: 1001 LVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQE--ALVE 1058
LVP + F + QL ++QF IL + G D E E
Sbjct: 21 LVP------TASFFIAS--------QL--QEQF-----NKILPEPTEGFAADDEPTTPAE 59
Query: 1059 ----FLK------DKKIGGAGLDVMIPEPLPADHPLVQLDNCVLT---PHTSSATKAVRD 1105
FL + G V+ + L + +NC L H +A +
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVL-------NLCLTEFENCYLEGNDIHALAAKLLQEN 112
Query: 1106 EKSSTSAENIIRGY 1119
+ + + +I+ Y
Sbjct: 113 DTTLVKTKELIKNY 126
Score = 31.2 bits (70), Expect = 2.4
Identities = 32/192 (16%), Positives = 51/192 (26%), Gaps = 87/192 (45%)
Query: 1 MRVATFRLPRNLSVCYVHIEKLLLIVQNS----H------------GISSFSRQGSRLLV 44
M A F ++ LI ++ H + S ++
Sbjct: 1739 MEKAAFED----------LKSKGLIPADATFAGHSLGEYAALASLADVMSIE-SLVEVV- 1786
Query: 45 PESLSKLRFNSRFDIDTYPVSEGR-----MPRDIFIEKLKGCSALLCNPH---------- 89
R G +PRD G A NP
Sbjct: 1787 -----FYR--------------GMTMQVAVPRDELGRSNYGMIA--INPGRVAASFSQEA 1825
Query: 90 -QKVDKEVLDRSGE-------NLK----VIATFSVGH----DHLH--LDEIKSRGIRVGT 131
Q V + V R+G N++ V A G D + L+ IK + I +
Sbjct: 1826 LQYVVERVGKRTGWLVEIVNYNVENQQYVAA----GDLRALDTVTNVLNFIKLQKIDIIE 1881
Query: 132 V-GPVSSDTVAE 142
+ +S + V
Sbjct: 1882 LQKSLSLEEVEG 1893
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 82.7 bits (204), Expect = 3e-17
Identities = 37/249 (14%), Positives = 70/249 (28%), Gaps = 16/249 (6%)
Query: 831 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKV-KTPKRTENLKVITTFSVGYDHL 889
A + +VG + + K T + E KV T FS L
Sbjct: 27 FDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFSNESIVL 86
Query: 890 ELHEIKARG----IRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTH 945
I+ + G + + + N L + R I + E +
Sbjct: 87 TEEMIEKTPNHCVVYSGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIM--M 144
Query: 946 IIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYT-SRRVKEEGTALGAQLVPL 1004
I + GA V ++GLG +G+ A+ A + + +G + +
Sbjct: 145 AIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHI 204
Query: 1005 DTL---CAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLK 1061
+ D T ++ + M +++ + E
Sbjct: 205 SKAAQELRDVDVCINTI-----PALVVTANVLAEMPSHTFVIDLASKPGGTDFRYAEKRG 259
Query: 1062 DKKIGGAGL 1070
K + GL
Sbjct: 260 IKALLVPGL 268
Score = 46.1 bits (109), Expect = 4e-05
Identities = 9/78 (11%), Positives = 20/78 (25%), Gaps = 8/78 (10%)
Query: 306 ALGAQLVPLDTL---CAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLD 362
+G + + + D T ++ + M +I+ +
Sbjct: 196 EMGMEPFHISKAAQELRDVDVCINTI-----PALVVTANVLAEMPSHTFVIDLASKPGGT 250
Query: 363 QEALVEFLKDKKIGGAGL 380
E K + GL
Sbjct: 251 DFRYAEKRGIKALLVPGL 268
Score = 44.2 bits (104), Expect = 1e-04
Identities = 24/144 (16%), Positives = 49/144 (34%), Gaps = 20/144 (13%)
Query: 609 ETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAV 668
E+++ +I+ G + L++ + V + D +A YN
Sbjct: 82 ESIVLTEEMIEKTPNHCVVYSGISNTYLNQC-MKKTNRTLVKLMERDDIAIYN------- 133
Query: 669 SRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKI 728
I + E + I + GA V ++GLG +G+ A+ A K+
Sbjct: 134 ---------SIPTAEGTIM--MAIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGA-KV 181
Query: 729 LYTSRRVKEEGQLFSLVYDFCRYS 752
+R ++ + + S
Sbjct: 182 KVGARESDLLARIAEMGMEPFHIS 205
Score = 42.2 bits (99), Expect = 6e-04
Identities = 26/188 (13%), Positives = 60/188 (31%), Gaps = 16/188 (8%)
Query: 700 KGATVGIVGL-----GNIGLETAKLLK-AFKVSKILYTSRRVKEEGQLFSLVYDFCRYSI 753
A + +VG G IG+ ++ + + + E ++ +
Sbjct: 27 FDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFSNESIVL 86
Query: 754 GGVTIKRLVKKTFILSFGGLVVTVLHVHIGDLPAESFEDQVQTDGLKTLTELCYHGTING 813
I++ + + G+ T L+ + + + D + GTI
Sbjct: 87 TEEMIEKTPNHCVV--YSGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMM 144
Query: 814 EWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKTPKRT 873
A++ T + GA V ++GLG +G+ A+ A + + +
Sbjct: 145 --AIQHTDF------TIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAE 196
Query: 874 ENLKVITT 881
++
Sbjct: 197 MGMEPFHI 204
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 74.5 bits (182), Expect = 1e-13
Identities = 97/644 (15%), Positives = 180/644 (27%), Gaps = 214/644 (33%)
Query: 71 RDI---FIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHD----HLHLDEIK 123
+DI F + C Q + K +L S E + I +
Sbjct: 19 KDILSVFEDAFV--DNFDCKDVQDMPKSIL--SKEEIDHI--IMSKDAVSGTLRLFWTLL 72
Query: 124 SRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFA-EIQTRALDTK-FP 181
S+ + V ++ V + + ++ S E + ++ T+ +
Sbjct: 73 SKQ----------EEMVQKF-------VEEVLRINYKFLM--SPIKTEQRQPSMMTRMYI 113
Query: 182 AKQQNLHNVKVRLFPRKN-EICQKYSTHKAYLLISLKDQKK---NGSQNPKWRM-GS-KT 235
++ L+N ++F + N Q Y + LL L+ K +G + GS KT
Sbjct: 114 EQRDRLYND-NQVFAKYNVSRLQPYLKLRQALL-ELRPAKNVLIDG-------VLGSGKT 164
Query: 236 ------------DTNHYFKAF------ENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGS 277
FK F NS L E+ L + + + S
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL--EMLQKL--LYQIDPNWTSRSDHS 220
Query: 278 QNPKWRMGS-KTDTNHYFGYNWFERSNGTALGAQLVPLDTLCAES-----DF---IFVTC 328
N K R+ S + + +E L+ L + + I +T
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENC--------LLVLLNVQNAKAWNAFNLSCKILLT- 271
Query: 329 ALTKD---TEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIP 385
T+ T+ L T I ++ L E L K + P
Sbjct: 272 --TRFKQVTDFLSAATT------THISLDHHSMTLTPDEVKSLLL--KYLD------CRP 315
Query: 386 EPLPAD----HPLVQLDNCGGAGLDVMIPEPLPADHP---------------------LV 420
+ LP + +P +I E + D L
Sbjct: 316 QDLPREVLTTNPRR----LS------IIAESIR-DGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 421 QLDNCE--EFFEEL--FDKNFQ------SI---DPPGAEPGSGQNLATT--SKSCILKDK 465
L+ E + F+ L F + S+ D ++ + S + K
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV---MVVVNKLHKYSLVEKQP 421
Query: 466 TLPRISASHLLPFK-----------------KYSGVPRLFERSTPTQKA----FIFHLLY 504
IS + + Y+ +P+ F+ F H+ +
Sbjct: 422 KESTISI-PSIYLELKVKLENEYALHRSIVDHYN-IPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 505 FFHNFKI-MSK-----PKLFL---------TRDDYSRVPAFEILGEMFDIITY------- 542
H I + +FL D + + IL + + Y
Sbjct: 480 --HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 543 -PASEGQIPRDI--FIEKLRGCSALLCTSRDRVDKQVLDESGGY 583
P E ++ I F+ K+ + + D + ++ E
Sbjct: 538 DPKYE-RLVNAILDFLPKI-EENLICSKYTDLLRIALMAEDEAI 579
Score = 68.0 bits (165), Expect = 1e-11
Identities = 112/710 (15%), Positives = 201/710 (28%), Gaps = 240/710 (33%)
Query: 427 EFFEELFDKNFQSIDPPGAEPGSGQNLATTSKSC--ILKDKTLPRISASHLLPFKKYSGV 484
FE+ F NF D + + I+ K SG
Sbjct: 23 SVFEDAFVDNFDCKDVQDMPKS-----ILSKEEIDHIIMSKD-------------AVSGT 64
Query: 485 PRLFE--RSTPTQ--KAFIFHLLYFFHNFKIMSK-------PKLFLTRDDYSRVPAFEIL 533
RLF S + + F+ +L + F +MS P + R +
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKF-LMSPIKTEQRQPSMMTRMYIEQRDRLYND- 122
Query: 534 GEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDKQV-LDESGGYRCTEDFFGL 592
++F ++ + R KLR ALL R K V +D G G
Sbjct: 123 NQVF-------AKYNVSRLQPYLKLR--QALL---ELRPAKNVLIDGVLG-------SG- 162
Query: 593 DLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTF-------SVGY---DHLELHEIKAR 642
K T + + + KV ++ L ++
Sbjct: 163 ----------K------TWVALDVC-LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 643 GIRVGSVGHISSDTVA--EYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLK 700
++ SD + + I A RR + + + ++
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP--------YENCLLV-------- 249
Query: 701 GATVGIVGLGNIGLETAKLLKAFKVS-KILYTSRRVKEEGQLFSLVYDFCRYSIGGVTIK 759
L N+ + AK AF +S KIL T+R F V DF + T
Sbjct: 250 --------LLNV--QNAKAWNAFNLSCKILLTTR--------FKQVTDF----LSAATTT 287
Query: 760 RLVKKTFILSFG-----GLVVTVLHVHIGDLPAESFEDQVQTDGLKTLTELCYHGTINGE 814
+ ++ L++ L DLP E
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE-------------------------- 321
Query: 815 WALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKTPKRTE 874
L P + + ++ R+ + T +
Sbjct: 322 -VLT----TNPRRLSIIAESI----------------------------RDGLATWDNWK 348
Query: 875 NL---KVITTFSVGYDHLELHEIKAR----GIRVGSVGHISSDTVA------EYNIGLAI 921
++ K+ T + LE E + + S HI + ++ + + +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA-HIPTILLSLIWFDVIKSDVMVV 407
Query: 922 A--------VSRRFQEGRKCITSGEWALKQT-------H--IIGP-NIM-GLKGATVGIV 962
V ++ +E I S LK H I+ NI +
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 963 GLGN-----IG--LETAKLLKAFKVSKILYTS-----RRVKEEGTALGAQLVPLDTLCAE 1010
L IG L+ + + + ++++ ++++ + TA A L+TL
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL--- 524
Query: 1011 SDFIFVTCALTKDT---EQLIGR-KQFSLMKPTAILVNTSRGGLLDQEAL 1056
F + + E+L+ F L K L+ + LL + AL
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDF-LPKIEENLICSKYTDLL-RIAL 572
Score = 45.6 bits (107), Expect = 1e-04
Identities = 65/471 (13%), Positives = 140/471 (29%), Gaps = 149/471 (31%)
Query: 719 LLKAFK----------VSKILYTSRRVKE-------EGQLFSLVYDFCRYSIGGVTIKRL 761
AF + K + + + L + +++
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK--QEEMVQKF 82
Query: 762 VKKTFILSFGGLVVTVLHVHIG-DLPAESFEDQVQTDGLKTLTELCYHGTINGE---WAL 817
V++ +++ L+ + + + +Q D L ++ ++ L
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR--DRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 818 KQTHIIGPNIMGLKGAT-VGIVGLGNIG---LETAKLLKAFKV-----SKILYTSRNKVK 868
+Q ++ L+ A V I G+ G + + ++KV KI + +
Sbjct: 141 RQ------ALLELRPAKNVLIDGVLGSGKTWV-ALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 869 TP----KRTENL--KVITTFSVGYDH-----LELHEIKARGIRVGSVGHISSDTVAEYNI 917
+P + + L ++ ++ DH L +H I+A
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE-------------------- 233
Query: 918 GLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKA 977
RR + + + ++ L N+ + AK A
Sbjct: 234 ------LRRLLKSKP--------YENCLLV----------------LLNV--QNAKAWNA 261
Query: 978 FKVS-KILYTSR--RVKEEGTALGAQLVPLDTLC-----AESDFIFVTCALTKDTE---- 1025
F +S KIL T+R +V + +A + LD E + + + +
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 1026 ---------QLIGR------------KQFSLMKPTAIL---VNTSRGGLLDQ--EALVEF 1059
+I K + K T I+ +N + + L F
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 1060 LKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSST 1110
I L ++ + + +D +V ++ H S + + K ST
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVV-VNKL----HKYSLVE--KQPKEST 425
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2,
structure initiative; HET: MSE NAP; 2.79A {Bacillus
subtilis}
Length = 300
Score = 42.5 bits (100), Expect = 4e-04
Identities = 37/223 (16%), Positives = 66/223 (29%), Gaps = 18/223 (8%)
Query: 831 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVK-TPKRTENLKVITTFSVGYDHL 889
+ A + +VG + +K + + T V T FS L
Sbjct: 29 QQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSNEEVVL 88
Query: 890 --ELHEIKARGIRV--GSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTH 945
+ + + G + A+ L R I + E +
Sbjct: 89 KQDHLDRTPAHCVIFSGISNAYLENIAAQAKRKLVKLFERDDIAIYNSIPTVEGTIM--L 146
Query: 946 IIGPNIMGLKGATVGIVGLGNIGLETAKLLKAF--KVSKILYTSRRVKEEGTALGAQLVP 1003
I + G+ V ++GLG G+ A+ A V K+ S T +G
Sbjct: 147 AIQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANV-KVGARSSAHLARITEMGLVPFH 205
Query: 1004 LDTL---CAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILV 1043
D L + D T ++ + S M P +++
Sbjct: 206 TDELKEHVKDIDICINTI-----PSMILNQTVLSSMTPKTLIL 243
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 41.4 bits (98), Expect = 0.001
Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTS---RRVKEEGTALGAQLVPLDT-LCA 1009
L+G V + GLGN+ K L K++ T V GA V +
Sbjct: 171 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGADAVAPNAIYGV 229
Query: 1010 ESDFIFVTCAL 1020
D IF CAL
Sbjct: 230 TCD-IFAPCAL 239
Score = 34.4 bits (80), Expect = 0.19
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 699 LKGATVGIVGLGNIGLETAKLL 720
L+G V + GLGN+ K L
Sbjct: 171 LEGLAVSVQGLGNVAKALCKKL 192
Score = 34.4 bits (80), Expect = 0.19
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 830 LKGATVGIVGLGNIGLETAKLL 851
L+G V + GLGN+ K L
Sbjct: 171 LEGLAVSVQGLGNVAKALCKKL 192
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 39.8 bits (94), Expect = 0.003
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK--EEGTALGAQLVPLDT-LCAE 1010
L G TV + GLG +G A L ++L + ALG V L+ L
Sbjct: 173 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTAVALEDVLSTP 231
Query: 1011 SDFIFVTCAL 1020
D +F CA+
Sbjct: 232 CD-VFAPCAM 240
Score = 34.5 bits (80), Expect = 0.21
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 699 LKGATVGIVGLGNIGLETAKLL 720
L G TV + GLG +G A L
Sbjct: 173 LDGLTVLVQGLGAVGGSLASLA 194
Score = 34.5 bits (80), Expect = 0.21
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 830 LKGATVGIVGLGNIGLETAKLL 851
L G TV + GLG +G A L
Sbjct: 173 LDGLTVLVQGLGAVGGSLASLA 194
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural
genomics, PSI-biology, midwest center for structu
genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Length = 312
Score = 38.3 bits (89), Expect = 0.010
Identities = 18/136 (13%), Positives = 35/136 (25%), Gaps = 21/136 (15%)
Query: 958 TVGIVGLGNIGLETAK-LLKAFKVSKILY---TSRRVKEEGTALGAQLVP-LDTLCAESD 1012
+G +G G A L +A + Y ++ + LG + + E D
Sbjct: 26 KLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECD 85
Query: 1013 FIFVTCALTKDTEQLIGRKQFSLMKPTAILV-------NTSRGGLLDQEALVEFLKDKKI 1065
IF E + A+ R A+ + + +
Sbjct: 86 VIFSLVTAQAALEVAQQ--AGPHLCEGALYADFTSCSPAVKR-------AIGDVISRHRP 136
Query: 1066 GGAGLDVMIPEPLPAD 1081
V + +
Sbjct: 137 SAQYAAVAVMSAVKPH 152
>4ezb_A Uncharacterized conserved protein; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 2.10A {Sinorhizobium meliloti}
Length = 317
Score = 37.6 bits (87), Expect = 0.020
Identities = 11/99 (11%), Positives = 26/99 (26%), Gaps = 11/99 (11%)
Query: 957 ATVGIVGLGNIGLETAKLLKA--------FKVS-KILYTSRRVKEEGTALGAQLVPLDTL 1007
T+ +G G A L + + S ++ LG + +
Sbjct: 25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLDDVAG 84
Query: 1008 CAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTS 1046
A +D + + A+ ++ +
Sbjct: 85 IACADVVLSLVVGAATKAVAAS--AAPHLSDEAVFIDLN 121
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H)
oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Length = 348
Score = 37.2 bits (87), Expect = 0.025
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 955 KGATVGIVGLGNIGLETAKLLKAF--KVSKILYTSRRVKEEGTALGAQ--LVPLDTLCAE 1010
KG VG+ G G +G K A +VS + + K++ ++G + E
Sbjct: 176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVS-VFARNEHKKQDALSMGVKHFYTDPKQCKEE 234
Query: 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVN 1044
DFI T D + + L+ L
Sbjct: 235 LDFIISTIPTHYDLKDYL-----KLLTYNGDLAL 263
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Length = 276
Score = 36.3 bits (83), Expect = 0.043
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 952 MGLKGATVGIVGLGNIGLETAKLLKA-FKVSKILY-TSRRVKEEGTALGAQLVPLDTLCA 1009
M L + VG G + + LK +++ IL + R + G + L+
Sbjct: 1 MSLV---LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPE 57
Query: 1010 ESDFIFVTC 1018
+ +FV
Sbjct: 58 LNGVVFVIV 66
Score = 30.2 bits (67), Expect = 3.7
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 6/55 (10%)
Query: 828 MGLKGATVGIVGLGNIGLETAKLLKA-FKVSKILYTSRNKVKTPKRTENLKVITT 881
M L + VG G + + LK +++ I SR+ + E
Sbjct: 1 MSLV---LNFVGTGTLTRFFLECLKDRYEIGYI--LSRSIDRARNLAEVYGGKAA 50
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers,
NAD binding DOMA amino acid insertional region,
hydrolase; HET: ADN NAD; 1.60A {Mycobacterium
tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Length = 494
Score = 35.5 bits (82), Expect = 0.10
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 8/109 (7%)
Query: 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTAL-GAQLVPLDTLCAESD 1012
+ G V I G G++G A+ +K + + + G +V ++ ++D
Sbjct: 272 IGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDAD 331
Query: 1013 FIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLK 1061
I VT KD +I + MK AIL N G D E + L+
Sbjct: 332 -IVVTATGNKD---IIMLEHIKAMKDHAILGNI---GHFDNEIDMAGLE 373
Score = 33.2 bits (76), Expect = 0.47
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 308 GAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALV 367
G +V ++ ++D I VT KD +I + MK AIL N G D E +
Sbjct: 317 GFDVVTVEEAIGDAD-IVVTATGNKD---IIMLEHIKAMKDHAILGNI---GHFDNEIDM 369
Query: 368 EFLK 371
L+
Sbjct: 370 AGLE 373
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD
cofactor, regul SAM-dependent methylation reactions; HET:
NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*
Length = 488
Score = 35.5 bits (82), Expect = 0.10
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 8/110 (7%)
Query: 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTAL-GAQLVPLDTLCAESD 1012
+ G + G G++G A LK I+ + + G Q++ L+ + +E+D
Sbjct: 263 IAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEAD 322
Query: 1013 FIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062
IFVT KD +I MK AI+ N G D E + L+
Sbjct: 323 -IFVTTTGNKD---IIMLDHMKKMKNNAIVCNI---GHFDNEIDMLGLET 365
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid,
S-adenosyl-L-homocysteine hydro NAD, one-carbon
metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei}
PDB: 3glq_A*
Length = 494
Score = 35.5 bits (82), Expect = 0.11
Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
Query: 948 GPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTAL-GAQLVPLDT 1006
++M + G + G G++G A+ L+ + + + A+ G ++V ++
Sbjct: 270 ATDVM-IAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEY 328
Query: 1007 LCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062
++D IFVT +I M+ AI+ N G D E V +
Sbjct: 329 AADKAD-IFVTATGNYH---VINHDHMKAMRHNAIVCNI---GHFDSEIDVASTRQ 377
Score = 33.2 bits (76), Expect = 0.53
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 308 GAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALV 367
G ++V ++ ++D IFVT +I M+ AI+ N G D E V
Sbjct: 320 GYRVVTMEYAADKAD-IFVTATGNYH---VINHDHMKAMRHNAIVCNI---GHFDSEIDV 372
Query: 368 EFLKD 372
+
Sbjct: 373 ASTRQ 377
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics,
seattle structural G center for infectious disease; HET:
ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Length = 464
Score = 35.4 bits (82), Expect = 0.12
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 21/122 (17%)
Query: 948 GPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE-------EGTALGAQ 1000
G ++M + G + G G++G +A+ L V E + G +
Sbjct: 240 GTDVM-MAGKVAVVCGYGDVGKGSAQSLAGAGARVK------VTEVDPICALQAAMDGFE 292
Query: 1001 LVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFL 1060
+V LD + +D I VT KD +I MK I+ N G D E V L
Sbjct: 293 VVTLDDAASTAD-IVVTTTGNKD---VITIDHMRKMKDMCIVGNI---GHFDNEIQVAAL 345
Query: 1061 KD 1062
++
Sbjct: 346 RN 347
Score = 34.6 bits (80), Expect = 0.19
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 308 GAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALV 367
G ++V LD + +D I VT KD +I MK I+ N G D E V
Sbjct: 290 GFEVVTLDDAASTAD-IVVTTTGNKD---VITIDHMRKMKDMCIVGNI---GHFDNEIQV 342
Query: 368 EFLKD 372
L++
Sbjct: 343 AALRN 347
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD,
one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A
{Homo sapiens} PDB: 3mtg_A*
Length = 435
Score = 35.3 bits (82), Expect = 0.12
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 998 GAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALV 1057
G +LV L+ + + D I +TC K+ ++ R+ MK + I+ N G + E V
Sbjct: 263 GFRLVKLNEVIRQVD-IVITCTGNKN---VVTREHLDRMKNSCIVCNM---GHSNTEIDV 315
Query: 1058 EFLKD 1062
L+
Sbjct: 316 ASLRT 320
Score = 34.9 bits (81), Expect = 0.15
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 308 GAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALV 367
G +LV L+ + + D I +TC K+ ++ R+ MK + I+ N G + E V
Sbjct: 263 GFRLVKLNEVIRQVD-IVITCTGNKN---VVTREHLDRMKNSCIVCNM---GHSNTEIDV 315
Query: 368 EFLKD 372
L+
Sbjct: 316 ASLRT 320
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium
falciparum} SCOP: c.2.1.4 c.23.12.3
Length = 479
Score = 35.2 bits (81), Expect = 0.13
Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 8/112 (7%)
Query: 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTAL-GAQLVPLDTLCAESD 1012
+ G V I G G++G A +K + + + G +V LD + + D
Sbjct: 255 ISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGD 314
Query: 1013 FIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKK 1064
F+TC D +I + MK A++ N G D E V L + K
Sbjct: 315 -FFITCTGNVD---VIKLEHLLKMKNNAVVGNI---GHFDDEIQVNELFNYK 359
Score = 33.2 bits (76), Expect = 0.51
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 308 GAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALV 367
G +V LD + + D F+TC D +I + MK A++ N G D E V
Sbjct: 300 GFNVVTLDEIVDKGD-FFITCTGNVD---VIKLEHLLKMKNNAVVGNI---GHFDDEIQV 352
Query: 368 EFLKDKK 374
L + K
Sbjct: 353 NELFNYK 359
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics,
SGC stockholm, S genomics consortium, SGC, hydrolase,
NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB:
3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A*
1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Length = 436
Score = 34.9 bits (81), Expect = 0.17
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 998 GAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALV 1057
G Q++ ++ + E+ IFVT D +I + F M+ AI+ N G D E V
Sbjct: 254 GYQVLLVEDVVEEAH-IFVTTTGNDD---IITSEHFPRMRDDAIVCNI---GHFDTEIQV 306
Query: 1058 EFLKD 1062
+LK
Sbjct: 307 AWLKA 311
Score = 34.5 bits (80), Expect = 0.20
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 308 GAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALV 367
G Q++ ++ + E+ IFVT D +I + F M+ AI+ N G D E V
Sbjct: 254 GYQVLLVEDVVEEAH-IFVTTTGNDD---IITSEHFPRMRDDAIVCNI---GHFDTEIQV 306
Query: 368 EFLKD 372
+LK
Sbjct: 307 AWLKA 311
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 34.5 bits (80), Expect = 0.21
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 9/77 (11%)
Query: 950 NIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE-----EGTALGAQLV-- 1002
I + V ++GL G A+LL + + E G ++V
Sbjct: 3 TITTFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCG 62
Query: 1003 --PLDTLCAESDFIFVT 1017
PL+ L + ++
Sbjct: 63 SHPLELLDEDFCYMIKN 79
Score = 32.9 bits (76), Expect = 0.64
Identities = 13/67 (19%), Positives = 24/67 (35%)
Query: 695 NIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGQLFSLVYDFCRYSIG 754
I + V ++GL G A+LL + + E SL+ + + G
Sbjct: 3 TITTFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCG 62
Query: 755 GVTIKRL 761
++ L
Sbjct: 63 SHPLELL 69
Score = 30.6 bits (70), Expect = 3.3
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 826 NIMGLKGATVGIVGLGNIGLETAKLLKA 853
I + V ++GL G A+LL
Sbjct: 3 TITTFENKKVLVLGLARSGEAAARLLAK 30
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in
PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent,
oxidoreductase; HET: NAP; 3.00A {Saccharomyces
cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Length = 360
Score = 34.1 bits (79), Expect = 0.25
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 955 KGATVGIVGLGNIGLETAKLLKAF--KVSKILYTSRRVKEEGTALGA 999
G VGIVGLG IG + KA + ++ S R +E+ +GA
Sbjct: 179 PGKKVGIVGLGGIGSMGTLISKAMGAETY-VISRSSRKREDAMKMGA 224
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK;
oxidoreductase, zinc binding, oxydoreductase,
metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2
c.2.1.1
Length = 369
Score = 33.7 bits (78), Expect = 0.34
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 955 KGATVGIVGLGNIGLETAKLLKAF--KVSKILYTSRRVKEEGTALGA 999
G VG+VG+G +G KL A V TS +E ALGA
Sbjct: 194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVV-AFTTSEAKREAAKALGA 239
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A
{Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A
1euz_A
Length = 419
Score = 33.2 bits (77), Expect = 0.47
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 675 GRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLL 720
R + A K LKG T+ I G GN G AK++
Sbjct: 191 ARGASYTIREAAKVL-----GWDTLKGKTIAIQGYGNAGYYLAKIM 231
Score = 33.2 bits (77), Expect = 0.47
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 930 GRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLL 975
R + A K LKG T+ I G GN G AK++
Sbjct: 191 ARGASYTIREAAKVL-----GWDTLKGKTIAIQGYGNAGYYLAKIM 231
Score = 32.8 bits (76), Expect = 0.68
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 826 NIMGLKGATVGIVGLGNIGLETAKLL 851
LKG T+ I G GN G AK++
Sbjct: 206 GWDTLKGKTIAIQGYGNAGYYLAKIM 231
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis;
HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP:
a.151.1.1 c.2.1.7 d.58.39.1
Length = 404
Score = 33.3 bits (77), Expect = 0.47
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 9/86 (10%)
Query: 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR---RVKEEGTALGAQLVPLDTLC-- 1008
L TV +VG G +G AK L V +L +R R E LG + V D L
Sbjct: 165 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDH 224
Query: 1009 -AESDFIFVTCALTKDTEQLIGRKQF 1033
A SD + V+ T +I
Sbjct: 225 LARSD-VVVSA--TAAPHPVIHVDDV 247
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns,
structural genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Length = 137
Score = 31.5 bits (71), Expect = 0.64
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Query: 1070 LDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128
L V P P P + L N S+ + + E + + GE MI+EL
Sbjct: 67 LRVKCPPTYPDVVPEIDLKNA---KGLSNESV----NLLKSHLEELAKKQCGEVMIFEL 118
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition,
oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB:
3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A
1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
Length = 501
Score = 32.8 bits (75), Expect = 0.65
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 675 GRKCITSGEWALKQTHIIGPNIM--GLKGATVGIVGLGNIGLETAKLL 720
GR E + + + M G T + G GN+GL + + L
Sbjct: 216 GRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYL 263
Score = 32.8 bits (75), Expect = 0.65
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 930 GRKCITSGEWALKQTHIIGPNIM--GLKGATVGIVGLGNIGLETAKLL 975
GR E + + + M G T + G GN+GL + + L
Sbjct: 216 GRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYL 263
Score = 32.8 bits (75), Expect = 0.83
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 828 MGLKGATVGIVGLGNIGLETAKLL 851
G T + G GN+GL + + L
Sbjct: 240 PGFGDKTFVVQGFGNVGLHSMRYL 263
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}
Length = 325
Score = 32.6 bits (75), Expect = 0.77
Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 9/76 (11%)
Query: 959 VGIVGLGNIGLETAKLLK---------AFKVSKILYTSRRVKEEGTALGAQLVPLDTLCA 1009
+ ++G GN+GL +++ + KV + + + + + +
Sbjct: 7 IILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGR 66
Query: 1010 ESDFIFVTCALTKDTE 1025
SD F
Sbjct: 67 ISDRAFSGPEDLMGEA 82
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 32.4 bits (74), Expect = 0.80
Identities = 10/61 (16%), Positives = 19/61 (31%)
Query: 806 CYHGTINGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRN 865
K+ + + L V +VG G IG+ L + + + + R
Sbjct: 155 IEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRRE 214
Query: 866 K 866
Sbjct: 215 P 215
Score = 28.9 bits (65), Expect = 9.0
Identities = 7/48 (14%), Positives = 15/48 (31%), Gaps = 4/48 (8%)
Query: 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYT----SRRVKEEGTALGA 999
V +VG G IG+ L + + + + + +
Sbjct: 181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKT 228
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein
NADP complex, structural genomics, PSI; HET: NAP; 2.00A
{Methanothermobacterthermautotrophicus} SCOP: a.100.1.8
c.2.1.6
Length = 264
Score = 31.9 bits (72), Expect = 1.1
Identities = 9/60 (15%), Positives = 15/60 (25%), Gaps = 4/60 (6%)
Query: 959 VGIVGLGNIGLETAK-LLKA-FKVSKILYTSRRVKEEGTALGAQLVP-LDTLCAESDFIF 1015
VG +G G + A L +V R A + + +
Sbjct: 3 VGFIGFGEVAQTLASRLRSRGVEVV-TSLEGRSPSTIERARTVGVTETSEEDVYSCPVVI 61
>1m4u_A Noggin; BMP antagonist, BMP-7, bone morphogenetic protein, C knot,
hormone-growth factor complex; HET: NAG; 2.42A {Homo
sapiens} SCOP: g.17.1.7
Length = 206
Score = 31.3 bits (70), Expect = 1.2
Identities = 27/118 (22%), Positives = 40/118 (33%), Gaps = 18/118 (15%)
Query: 387 PLPAD-HPLVQLDNCGGAGLDVMIPEPLPADHPLVQLDNCEEFFEEL---FDKNFQSIDP 442
P P+D PLV L P P P + N L +D F + P
Sbjct: 9 PAPSDNLPLVDLIE-----------HPDPIFDPKEKDLNETLLRSLLGGHYDPGFMATSP 57
Query: 443 PGAEPGSGQNLATTSKSCILKDKTL-PRISASHLLPFKK--YSGVPRLFERSTPTQKA 497
P PG G A ++ D+ L R S + K +S ++ ++K
Sbjct: 58 PEDRPGGGGGAAGGAEDLAELDQLLRQRPSGAMPSEIKGLEFSEGLAQGKKQRLSKKL 115
>3qha_A Putative oxidoreductase; seattle structural genomics center for
infectious disease, S mycobacterium avium 104, rossmann
fold; 2.25A {Mycobacterium avium}
Length = 296
Score = 31.5 bits (72), Expect = 1.3
Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 12/108 (11%)
Query: 948 GPNIMGLKGAT------VGIVGLGNIGLETAK-LLKA-FKVSKILYTSRRVK-EEGTALG 998
GP M A +G +GLGN+G A + + V +Y R G
Sbjct: 1 GPGSMTTNAAHTTEQLKLGYIGLGNMGAPMATRMTEWPGGV--TVYDIRIEAMTPLAEAG 58
Query: 999 AQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTS 1046
A L A +D I +T +++G KP ++ S
Sbjct: 59 ATLADSVADVAAADLIHITVLDDAQVREVVGEL-AGHAKPGTVIAIHS 105
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase;
oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Length = 421
Score = 31.7 bits (73), Expect = 1.4
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 697 MGLKGATVGIVGLGNIGLETAKLL 720
+ ++ A + + G GN+G T K +
Sbjct: 208 IKMEDAKIAVQGFGNVGTFTVKNI 231
Score = 31.7 bits (73), Expect = 1.4
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 828 MGLKGATVGIVGLGNIGLETAKLL 851
+ ++ A + + G GN+G T K +
Sbjct: 208 IKMEDAKIAVQGFGNVGTFTVKNI 231
Score = 31.7 bits (73), Expect = 1.4
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 952 MGLKGATVGIVGLGNIGLETAKLL 975
+ ++ A + + G GN+G T K +
Sbjct: 208 IKMEDAKIAVQGFGNVGTFTVKNI 231
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 31.4 bits (72), Expect = 1.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 832 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVK 868
G+TV I+G G IGL T +L + + ++ ++R K
Sbjct: 183 GSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATK 219
Score = 31.4 bits (72), Expect = 1.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 701 GATVGIVGLGNIGLETAKLLKAFKVSKI 728
G+TV I+G G IGL T +L + + +
Sbjct: 183 GSTVAILGGGVIGLLTVQLARLAGATTV 210
Score = 31.4 bits (72), Expect = 1.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 956 GATVGIVGLGNIGLETAKLLKAFKVSKI 983
G+TV I+G G IGL T +L + + +
Sbjct: 183 GSTVAILGGGVIGLLTVQLARLAGATTV 210
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant,
oxidoreductase; 2.90A {Thermotoga maritima} SCOP:
c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A
Length = 415
Score = 31.7 bits (73), Expect = 1.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 697 MGLKGATVGIVGLGNIGLETAKLL 720
+ K ATV + G GN+G A L+
Sbjct: 205 IDPKKATVAVQGFGNVGQFAALLI 228
Score = 31.7 bits (73), Expect = 1.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 828 MGLKGATVGIVGLGNIGLETAKLL 851
+ K ATV + G GN+G A L+
Sbjct: 205 IDPKKATVAVQGFGNVGQFAALLI 228
Score = 31.7 bits (73), Expect = 1.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 952 MGLKGATVGIVGLGNIGLETAKLL 975
+ K ATV + G GN+G A L+
Sbjct: 205 IDPKKATVAVQGFGNVGQFAALLI 228
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET:
NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7
c.58.1.1
Length = 421
Score = 31.3 bits (72), Expect = 1.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 697 MGLKGATVGIVGLGNIGLETAKLL 720
G++G TV I G+GN+G TA L
Sbjct: 206 GGIEGKTVAIQGMGNVGRWTAYWL 229
Score = 31.3 bits (72), Expect = 1.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 828 MGLKGATVGIVGLGNIGLETAKLL 851
G++G TV I G+GN+G TA L
Sbjct: 206 GGIEGKTVAIQGMGNVGRWTAYWL 229
Score = 31.3 bits (72), Expect = 1.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 952 MGLKGATVGIVGLGNIGLETAKLL 975
G++G TV I G+GN+G TA L
Sbjct: 206 GGIEGKTVAIQGMGNVGRWTAYWL 229
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 31.4 bits (72), Expect = 1.7
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 701 GATVGIVGLGNIGLETAKLLKAFKVSKI 728
V I+G G IGL + A +
Sbjct: 161 NKNVIIIGAGTIGLLAIQCAVALGAKSV 188
Score = 31.4 bits (72), Expect = 1.7
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 832 GATVGIVGLGNIGLETAKLLKAFKVSKI 859
V I+G G IGL + A +
Sbjct: 161 NKNVIIIGAGTIGLLAIQCAVALGAKSV 188
Score = 31.4 bits (72), Expect = 1.7
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 956 GATVGIVGLGNIGLETAKLLKAFKVSKI 983
V I+G G IGL + A +
Sbjct: 161 NKNVIIIGAGTIGLLAIQCAVALGAKSV 188
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism,
NADP+, structural GEN riken structural
genomics/proteomics initiative; HET: NDP; 1.80A {Thermus
thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Length = 289
Score = 31.4 bits (72), Expect = 1.7
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 957 ATVGIVGLGNIGLETAK-LLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIF 1015
V +GLG +G A L + F T + G++ VPL+ AE+ IF
Sbjct: 2 EKVAFIGLGAMGYPMAGHLARRFPTLVWNRTFEKALRHQEEFGSEAVPLE-RVAEARVIF 60
Query: 1016 VTC 1018
TC
Sbjct: 61 -TC 62
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG,
oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Length = 424
Score = 31.3 bits (72), Expect = 1.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 697 MGLKGATVGIVGLGNIGLETAKLL 720
+ L+ A + I G GN G AK +
Sbjct: 217 IKLQNARIIIQGFGNAGSFLAKFM 240
Score = 31.3 bits (72), Expect = 1.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 828 MGLKGATVGIVGLGNIGLETAKLL 851
+ L+ A + I G GN G AK +
Sbjct: 217 IKLQNARIIIQGFGNAGSFLAKFM 240
Score = 31.3 bits (72), Expect = 1.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 952 MGLKGATVGIVGLGNIGLETAKLL 975
+ L+ A + I G GN G AK +
Sbjct: 217 IKLQNARIIIQGFGNAGSFLAKFM 240
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A
{Thermus thermophilus}
Length = 419
Score = 31.3 bits (72), Expect = 1.8
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 675 GRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLL 720
G + E K+ + L+GA V + GLG +G A
Sbjct: 198 GLGALLVLEALAKRRGL------DLRGARVVVQGLGQVGAAVALHA 237
Score = 31.3 bits (72), Expect = 1.8
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 930 GRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLL 975
G + E K+ + L+GA V + GLG +G A
Sbjct: 198 GLGALLVLEALAKRRGL------DLRGARVVVQGLGQVGAAVALHA 237
Score = 31.3 bits (72), Expect = 2.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 828 MGLKGATVGIVGLGNIGLETAKLL 851
+ L+GA V + GLG +G A
Sbjct: 214 LDLRGARVVVQGLGQVGAAVALHA 237
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 31.2 bits (71), Expect = 1.8
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 690 HIIGPNIMGLK-GATVGIVGLGNIGLETAKLLKAFKVSKI 728
+ + G++ G V I+G G IGL +LK SK+
Sbjct: 202 NAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKV 241
Score = 31.2 bits (71), Expect = 1.8
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 821 HIIGPNIMGLK-GATVGIVGLGNIGLETAKLLKAFKVSKI 859
+ + G++ G V I+G G IGL +LK SK+
Sbjct: 202 NAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKV 241
Score = 31.2 bits (71), Expect = 1.8
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 945 HIIGPNIMGLK-GATVGIVGLGNIGLETAKLLKAFKVSKI 983
+ + G++ G V I+G G IGL +LK SK+
Sbjct: 202 NAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKV 241
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1
conjugation pathway, RWD domain, alpha+beta sandwich
fold, structural genomics; NMR {Homo sapiens} SCOP:
d.20.1.3 PDB: 2dmf_A
Length = 128
Score = 29.9 bits (67), Expect = 2.0
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 13/62 (20%)
Query: 1070 LDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSS---TSAENIIRGYKGEPMIY 1126
L + +P P + P + + N + + DE+ ++ + G M+Y
Sbjct: 63 LVLQVPAEYPHEVPQISIRNP----------RGLSDEQIHTILQVLGHVAKAGLGTAMLY 112
Query: 1127 EL 1128
EL
Sbjct: 113 EL 114
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A
{Thermus thermophilus HB27} PDB: 3aoe_A
Length = 440
Score = 31.4 bits (72), Expect = 2.1
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 675 GRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLL 720
GR + A ++ + ++GA V I G GN+G A+
Sbjct: 215 GRGVFITAAAAAEKIG------LQVEGARVAIQGFGNVGNAAARAF 254
Score = 31.4 bits (72), Expect = 2.1
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 930 GRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLL 975
GR + A ++ + ++GA V I G GN+G A+
Sbjct: 215 GRGVFITAAAAAEKIG------LQVEGARVAIQGFGNVGNAAARAF 254
Score = 31.4 bits (72), Expect = 2.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 828 MGLKGATVGIVGLGNIGLETAKLL 851
+ ++GA V I G GN+G A+
Sbjct: 231 LQVEGARVAIQGFGNVGNAAARAF 254
>2f5g_A Transposase, putative; dimer, stem-loop binding, gene regulation;
1.70A {Sulfolobus solfataricus} SCOP: d.58.57.1 PDB:
2f4f_A 2ec2_A
Length = 133
Score = 29.7 bits (65), Expect = 2.7
Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 8/110 (7%)
Query: 553 IFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVL 612
++I K R + + E E + ++ + VN
Sbjct: 18 VWIPKHR------RNTLVNEIAEYTKEVLKSIAEELGCEIIALEVMPDHIHLFVNCPPRY 71
Query: 613 GVSFLIKNLKVITTFSVGYDHLELHEIK--ARGIRVGSVGHISSDTVAEY 660
S+L K + + +L++ K R V + G++SS+ + +Y
Sbjct: 72 APSYLANYFKGKSARLILKKFPQLNKGKLWTRSYFVATAGNVSSEVIKKY 121
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A
{Archaeoglobus fulgidus}
Length = 236
Score = 30.5 bits (68), Expect = 2.8
Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 28/206 (13%)
Query: 704 VGIVGLGNIGLETAKLLKA--FKVSKIL----YTSRRVKEEGQLFSLVYDFCRYSIGGVT 757
VG++G G IG A+ L+ F+++ IL + V+ + D +
Sbjct: 3 VGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEHEKMVRGIDEFLQREMDVAVEAASQQA 62
Query: 758 IKRLVKKTFILSFGGLVVTVLHVHIGDLPAESFEDQVQTDGLKTLTELCYHGTINGEWAL 817
+K +K +V++ D + + E+C
Sbjct: 63 VKDYAEKILKAGIDLIVLSTGAFADRDFLSR-------------VREVCRKT-------- 101
Query: 818 KQTHIIGPN-IMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKTPKRTENL 876
+ I I GL + I L T K + F +++ K +NL
Sbjct: 102 GRRVYIASGAIGGLDAIFSASELIEEIVLTTRKNWRQFGRKGVIFEGSASEAAQKFPKNL 161
Query: 877 KVITTFSVGYDHLELHEIKARGIRVG 902
V T S+ + A +
Sbjct: 162 NVAATLSIASGKDVKVRLVADEVEEN 187
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
{Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Length = 398
Score = 30.7 bits (70), Expect = 3.1
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 17/53 (32%)
Query: 807 YHGTINGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGL---ETAKLLKAFKV 856
YHG + +GP G+TV + G G +GL +A+LL A V
Sbjct: 175 YHGAVTAG--------VGP------GSTVYVAGAGPVGLAAAASARLLGAAVV 213
Score = 29.5 bits (67), Expect = 7.4
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 700 KGATVGIVGLGNIGL---ETAKLLKAFKV 725
G+TV + G G +GL +A+LL A V
Sbjct: 185 PGSTVYVAGAGPVGLAAAASARLLGAAVV 213
Score = 29.5 bits (67), Expect = 7.4
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 955 KGATVGIVGLGNIGL---ETAKLLKAFKV 980
G+TV + G G +GL +A+LL A V
Sbjct: 185 PGSTVYVAGAGPVGLAAAASARLLGAAVV 213
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding,
cytoplasmic vesicle, ER-GOLG transport, golgi apparatus,
lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Length = 199
Score = 29.8 bits (66), Expect = 3.3
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 487 LFERSTPTQKAFIFHLLYFFHNFKIMSKPK-LFLTRDDYSRVPAFEILGEMFD 538
+ ERS +A + Y H + + + +Y AF +L ++ D
Sbjct: 48 IVERSAKGSRASVKEQEYLCHVYVRSDSLAGVVIADSEYPSRVAFTLLEKVLD 100
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase,
zinc-dependent, plant DE biosynthesis, substrate
inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB:
1yqx_A*
Length = 366
Score = 30.2 bits (69), Expect = 3.7
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 952 MGLKGATVGIVGLGNIGLETAKLLKAF--KVSKILYTSRRVKEEGTALGA 999
+ G +GIVGLG +G K KAF KV+ I + + +E GA
Sbjct: 184 LDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGA 233
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis,
metal-binding, NADP, oxidoreductase, zinc; 2.0A
{Arabidopsis thaliana} PDB: 2cf6_A*
Length = 357
Score = 30.3 bits (69), Expect = 3.8
Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 16/103 (15%)
Query: 952 MGLKGATVGIVGLGNIGLETAKLLKAF--KVSKILYTSRRVKEEGTALGAQLVPLDTLCA 1009
+ G GI+GLG +G K+ KA V+ I ++++ +E LGA +
Sbjct: 177 LKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDY-VIGSDQ 235
Query: 1010 ES--------DFIFVTCALTKDTEQLIGRKQFSLMKPTAILVN 1044
D++ T + E + SL+K L+
Sbjct: 236 AKMSELADSLDYVIDTVPVHHALEPYL-----SLLKLDGKLIL 273
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 128
Score = 29.0 bits (65), Expect = 3.8
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 8/59 (13%)
Query: 1070 LDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128
L +P P+ P + +++ LT K EPM++EL
Sbjct: 60 LVFHLPVNYPSCLPGISINSEQLTRAQCVTVK--------EKLLEQAESLLSEPMVHEL 110
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG,
PSI-2, GFO/IDH/MO family, protein structure initiative;
HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Length = 304
Score = 30.3 bits (68), Expect = 4.0
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 835 VGIVGLGNIGLETAKLLKAFKVSKILY-TSRNKVKTPKRTENLKVITTF 882
IVG GNIG + L+ +I RN + P + +V++
Sbjct: 12 AAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPFELQPFRVVSDI 60
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 30.1 bits (67), Expect = 4.2
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSR---RVKEEGTALGAQLV-PLDTLCAESDF 1013
+ ++G GN+ AK L + SR +E + A+ L + +
Sbjct: 12 PIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKL 71
Query: 1014 IFVTC 1018
V+
Sbjct: 72 YIVSL 76
Score = 29.4 bits (65), Expect = 6.5
Identities = 9/51 (17%), Positives = 20/51 (39%)
Query: 834 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKTPKRTENLKVITTFSV 884
+ ++G GN+ AK L + SR + + + ++ T +
Sbjct: 12 PIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDL 62
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 30.2 bits (69), Expect = 4.3
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 699 LKGATVGIVGLGNIGLETAKLLKAFKVSKI 728
+ G +V I G G +GL + KA +
Sbjct: 166 ISGKSVLITGAGPLGLLGIAVAKASGAYPV 195
Score = 30.2 bits (69), Expect = 4.3
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 830 LKGATVGIVGLGNIGLETAKLLKAFKVSKI 859
+ G +V I G G +GL + KA +
Sbjct: 166 ISGKSVLITGAGPLGLLGIAVAKASGAYPV 195
Score = 30.2 bits (69), Expect = 4.3
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKI 983
+ G +V I G G +GL + KA +
Sbjct: 166 ISGKSVLITGAGPLGLLGIAVAKASGAYPV 195
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi
conformation, oxidoreductase; HET: NAD PDC; 2.50A
{Staphylococcus aureus} PDB: 3ojl_A*
Length = 431
Score = 30.3 bits (69), Expect = 4.5
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 700 KGATVGIVGLGNIGLETAKLL--KAFKV 725
G+ + +VGLG IGL T+ + V
Sbjct: 10 HGSKLTVVGLGYIGLPTSIMFAKHGVDV 37
Score = 30.3 bits (69), Expect = 4.5
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 831 KGATVGIVGLGNIGLETAKLL--KAFKV 856
G+ + +VGLG IGL T+ + V
Sbjct: 10 HGSKLTVVGLGYIGLPTSIMFAKHGVDV 37
Score = 30.3 bits (69), Expect = 4.5
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 955 KGATVGIVGLGNIGLETAKLL--KAFKV 980
G+ + +VGLG IGL T+ + V
Sbjct: 10 HGSKLTVVGLGYIGLPTSIMFAKHGVDV 37
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
PDB: 3ggg_D* 3ggp_A*
Length = 314
Score = 29.9 bits (68), Expect = 4.8
Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 18/169 (10%)
Query: 947 IGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILY-------TSRRVKEEGTALGA 999
I + L V IVG+G +G AK L+ +Y + + + G
Sbjct: 24 IIKILKSLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEG 83
Query: 1000 QLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL--VNTSRGGLLDQEALV 1057
DF+ + + + ++ +K ++ A + + +G L+ L
Sbjct: 84 TTSIAKVEDFSPDFVML-SSPVRTFREIA-KKLSYILSEDATVTDQGSVKGKLV--YDLE 139
Query: 1058 EFLKDKKIGG---AGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAV 1103
L + +GG AG + E + L + +LTP + K +
Sbjct: 140 NILGKRFVGGHPIAGTEKSGVEY--SLDNLYEGKKVILTPTKKTDKKRL 186
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Length = 144
Score = 29.0 bits (66), Expect = 4.8
Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 10/86 (11%)
Query: 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR---RVKEEGTALGAQLVPLDTLC-- 1008
G + +VG G + E A + K+ R V+ + V ++ +
Sbjct: 19 NGGNKILLVGNGMLASEIAPYFSYPQY-KVTVAGRNIDHVRAFAEKYEYEYVLINDIDSL 77
Query: 1009 -AESDFIFVTCALTKDTEQLIGRKQF 1033
+D I T T ++ +
Sbjct: 78 IKNNDVII-TA--TSSKTPIVEERSL 100
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314,
rhodococcus RHA1, structural genomics, PSI-2; HET: MSE;
2.05A {Rhodococcus SP}
Length = 209
Score = 29.1 bits (66), Expect = 5.5
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 8/36 (22%)
Query: 388 LPADHPLVQLDNCGGAGLDVMIPEPLPADHPLVQLD 423
L A+HPL AG+D + A+HP+V LD
Sbjct: 83 LGAEHPL--------AGVDGPVRLADLAEHPMVLLD 110
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase;
HET: NAD; 2.27A {Pseudomonas putida}
Length = 398
Score = 29.5 bits (67), Expect = 6.0
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 17/53 (32%)
Query: 807 YHGTINGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGL---ETAKLLKAFKV 856
+HG ++ + P G+ V I G G +G A+LL A V
Sbjct: 175 FHGCVSAG--------VKP------GSHVYIAGAGPVGRCAAAGARLLGAACV 213
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas
aeruginosa PA01, PSI-2, structural genomics; HET: PG4;
2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A*
3q3c_A*
Length = 302
Score = 29.5 bits (67), Expect = 6.6
Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 957 ATVGIVGLGNIGLETAK-LLKA-FKVSKILYT-SRRVKEEGTALGAQLVP-LDTLCAESD 1012
+ +GLG++G A LLKA + + ++ + + A GA +D
Sbjct: 4 KQIAFIGLGHMGAPMATNLLKAGYLL--NVFDLVQSAVDGLVAAGASAARSARDAVQGAD 61
Query: 1013 FIFVTCALTKDTEQLIGRKQ--FSLMKPTAILVNTS 1046
+ ++ E L + + P +++ S
Sbjct: 62 VVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECS 97
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase,
conformationa thioester, adenylation,
transthioesterification, ATP-bindin nucleotide-binding;
2.70A {Saccharomyces cerevisiae}
Length = 1015
Score = 29.8 bits (66), Expect = 6.8
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 943 QTHIIGPNIMG-LKGATVGIVGLGNIGLETAKLLKAFKVSKI-LYTSRRVKEEGTALGAQ 1000
Q +++G M ++ + V I+GL +G+E AK + V + ++ V+ L Q
Sbjct: 13 QLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLAD--LSTQ 70
Score = 29.4 bits (65), Expect = 9.7
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 688 QTHIIGPNIMG-LKGATVGIVGLGNIGLETAKLL 720
Q +++G M ++ + V I+GL +G+E AK +
Sbjct: 13 QLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNV 46
Score = 29.4 bits (65), Expect = 9.7
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 819 QTHIIGPNIMG-LKGATVGIVGLGNIGLETAKLL 851
Q +++G M ++ + V I+GL +G+E AK +
Sbjct: 13 QLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNV 46
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 29.0 bits (64), Expect = 7.1
Identities = 10/54 (18%), Positives = 17/54 (31%)
Query: 952 MGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLD 1005
+ +G + I G GN+G + Y S+ + VP
Sbjct: 15 LYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQATTLGEIVIMAVPYP 68
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein
structure initiative, midwest center for structural
genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1}
PDB: 3jsa_A*
Length = 331
Score = 29.5 bits (67), Expect = 7.3
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 704 VGIVGLGNIGLETAKLLK 721
+ I GLGN+GL ++++
Sbjct: 9 LSIFGLGNVGLNLLRIIR 26
Score = 29.5 bits (67), Expect = 7.3
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 835 VGIVGLGNIGLETAKLLK 852
+ I GLGN+GL ++++
Sbjct: 9 LSIFGLGNVGLNLLRIIR 26
Score = 29.5 bits (67), Expect = 7.3
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 959 VGIVGLGNIGLETAKLLK 976
+ I GLGN+GL ++++
Sbjct: 9 LSIFGLGNVGLNLLRIIR 26
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial
alcohol dehydrogenase, domain exchange, chimera,
metal-binding; 1.40A {Thermoanaerobacter brockii} PDB:
2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A*
3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Length = 352
Score = 29.5 bits (67), Expect = 7.3
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 17/53 (32%)
Query: 807 YHGTINGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGL---ETAKLLKAFKV 856
+HG I G TV ++G+G +GL A L A ++
Sbjct: 156 FHGAELAN--------IKL------GDTVCVIGIGPVGLMSVAGANHLGAGRI 194
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 29.1 bits (66), Expect = 8.0
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 830 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVK 868
G TV I G G +GL + ++ ++ + + +
Sbjct: 194 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNR 232
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural
genomics, midwest cente structural genomics; 2.15A
{Thiobacillus denitrificans}
Length = 444
Score = 29.1 bits (66), Expect = 8.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 697 MGLKGATVGIVGLGNIGLETAKLLK 721
G+K VG++GLG +G T +L+
Sbjct: 6 QGMKPIHVGLLGLGTVGGGTLTVLR 30
Score = 29.1 bits (66), Expect = 8.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 828 MGLKGATVGIVGLGNIGLETAKLLK 852
G+K VG++GLG +G T +L+
Sbjct: 6 QGMKPIHVGLLGLGTVGGGTLTVLR 30
Score = 29.1 bits (66), Expect = 8.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 952 MGLKGATVGIVGLGNIGLETAKLLK 976
G+K VG++GLG +G T +L+
Sbjct: 6 QGMKPIHVGLLGLGTVGGGTLTVLR 30
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 28.8 bits (65), Expect = 8.9
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 957 ATVGIVGLGN--IGLETAKLLKAFKVSKILYTSRRVKEEGTAL------GAQLVPLDTLC 1008
+V + G N IGL + L K + + + R E+ T L ++PL C
Sbjct: 4 GSVVVTG-ANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTC 62
Query: 1009 AES 1011
+S
Sbjct: 63 DKS 65
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate
aldolase; sequestered tunnel, substrate channeling; HET:
NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1
Length = 312
Score = 29.2 bits (65), Expect = 8.9
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 835 VGIVGLGNIGLET-AKLLKAFKVSKILYTSRNKVKTP--KRTENLKVITTFSVGYDHLEL 891
V I+G GNIG + K+L+ K ++ + R + + V TT++ G + L +
Sbjct: 7 VAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYA-GVEGL-I 64
Query: 892 HEIKARGIRV 901
+ I
Sbjct: 65 KLPEFADIDF 74
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination,
NAD, zinc, inhibition, acetylation, metal-binding; HET:
NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB:
1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A*
1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A
1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Length = 374
Score = 29.1 bits (66), Expect = 9.3
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 700 KGATVGIVGLGNIGL---ETAKLLKAFKV 725
+G+T + GLG +GL K A ++
Sbjct: 191 QGSTCAVFGLGGVGLSVIMGCKAAGAARI 219
Score = 29.1 bits (66), Expect = 9.3
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 831 KGATVGIVGLGNIGL---ETAKLLKAFKV 856
+G+T + GLG +GL K A ++
Sbjct: 191 QGSTCAVFGLGGVGLSVIMGCKAAGAARI 219
Score = 29.1 bits (66), Expect = 9.3
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 955 KGATVGIVGLGNIGL---ETAKLLKAFKV 980
+G+T + GLG +GL K A ++
Sbjct: 191 QGSTCAVFGLGGVGLSVIMGCKAAGAARI 219
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione
reductase, glutathione-dependent formaldehyde
dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo
sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A*
2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Length = 373
Score = 29.1 bits (66), Expect = 9.9
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 831 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVK 868
G+ + GLG +GL K S+I+ NK K
Sbjct: 190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDK 227
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase
(CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias}
SCOP: b.35.1.2 c.2.1.1
Length = 374
Score = 28.8 bits (65), Expect = 10.0
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 831 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVK 868
G+T + GLG +GL + +I+ N K
Sbjct: 192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDK 229
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.404
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,920,593
Number of extensions: 1059510
Number of successful extensions: 3646
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3421
Number of HSP's successfully gapped: 353
Length of query: 1128
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1024
Effective length of database: 3,798,009
Effective search space: 3889161216
Effective search space used: 3889161216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (27.9 bits)