BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13055
(97 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VCC3|RT24_DROME 28S ribosomal protein S24, mitochondrial OS=Drosophila melanogaster
GN=mRpS24 PE=3 SV=1
Length = 165
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 67/96 (69%), Positives = 79/96 (82%)
Query: 2 GNMLDGLRPSETAVEDEFIRRFLRGTWHNLFLSEIIIKRQHNIIRIGGIVERAIHPRKIY 61
M D LRPS+TA+ED FIR+F+ GTWH L SE+IIKRQHN IRI ++ +AI PRK+Y
Sbjct: 70 STMKDALRPSQTAIEDVFIRKFVTGTWHALVCSEVIIKRQHNTIRIAALIRQAITPRKMY 129
Query: 62 FLIGYTEELLSFWLQCPVKLELQTVESKKDVVFRYI 97
FLIGYTEELLS+W+QCPV LELQTV KKDVVF+YI
Sbjct: 130 FLIGYTEELLSYWMQCPVTLELQTVGDKKDVVFKYI 165
>sp|Q3B8K3|RT24B_XENLA 28S ribosomal protein S24-B, mitochondrial OS=Xenopus laevis
GN=mrps24-b PE=2 SV=1
Length = 170
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 66/96 (68%), Gaps = 2/96 (2%)
Query: 2 GNMLDGLRPSETAVEDEFIRRFLRGTWHNLFLSEIIIKRQHNIIRIGGIVERAIHPRKIY 61
GN+ +E +ED FIRRF+ GT+H +EI+IKR+ N++ I I R + +K Y
Sbjct: 77 GNLDGEGGAAERTIEDVFIRRFIFGTFHGCLANEIVIKRRANLLIICAIFIRKMPTQKFY 136
Query: 62 FLIGYTEELLSFWLQCPVKLELQTVESKKDVVFRYI 97
FLIGYTE LLSF +CPVKLE+QTVE K V+++Y+
Sbjct: 137 FLIGYTETLLSFLYKCPVKLEVQTVEEK--VIYKYL 170
>sp|Q6NTS3|RT24A_XENLA 28S ribosomal protein S24-A, mitochondrial OS=Xenopus laevis
GN=mrps24-a PE=2 SV=1
Length = 170
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 66/96 (68%), Gaps = 2/96 (2%)
Query: 2 GNMLDGLRPSETAVEDEFIRRFLRGTWHNLFLSEIIIKRQHNIIRIGGIVERAIHPRKIY 61
GN+ +E +ED FIRRF+ GT+H +EI+IKR+ N++ I I R + +K Y
Sbjct: 77 GNLDGEGGAAERTIEDVFIRRFIFGTFHGCLANEIVIKRRANLLIICAIFIRKMPTQKFY 136
Query: 62 FLIGYTEELLSFWLQCPVKLELQTVESKKDVVFRYI 97
FLIGYTE LLSF +CPVKLE+QTVE K V+++Y+
Sbjct: 137 FLIGYTETLLSFLYKCPVKLEVQTVEEK--VIYKYL 170
>sp|Q502C1|RT24_DANRE 28S ribosomal protein S24, mitochondrial OS=Danio rerio GN=mrps24
PE=2 SV=1
Length = 163
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 67/96 (69%), Gaps = 2/96 (2%)
Query: 2 GNMLDGLRPSETAVEDEFIRRFLRGTWHNLFLSEIIIKRQHNIIRIGGIVERAIHPRKIY 61
GN+ +E +ED FIRRF+ GT+H+ E++IKR+ N++ I ++ + + P K Y
Sbjct: 70 GNLHAEGGAAERVLEDVFIRRFIFGTFHSCLADELVIKRRGNVLIICAVMIQKLLPSKFY 129
Query: 62 FLIGYTEELLSFWLQCPVKLELQTVESKKDVVFRYI 97
FL+GYTEELLS + +CPVK+ELQ V+ K VV++Y+
Sbjct: 130 FLLGYTEELLSHFYKCPVKMELQLVDEK--VVYKYL 163
>sp|Q96EL2|RT24_HUMAN 28S ribosomal protein S24, mitochondrial OS=Homo sapiens GN=MRPS24
PE=1 SV=1
Length = 167
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 64/96 (66%), Gaps = 2/96 (2%)
Query: 2 GNMLDGLRPSETAVEDEFIRRFLRGTWHNLFLSEIIIKRQHNIIRIGGIVERAIHPRKIY 61
GN+ +E VED F+R+F+ GT+ ++++KR+ N + I +V R + P K Y
Sbjct: 74 GNLDGEDHAAERTVEDVFLRKFMWGTFPGCLADQLVLKRRGNQLEICAVVLRQLSPHKYY 133
Query: 62 FLIGYTEELLSFWLQCPVKLELQTVESKKDVVFRYI 97
FL+GY+E LLS++ +CPV+L LQTV SK VV++Y+
Sbjct: 134 FLVGYSETLLSYFYKCPVRLHLQTVPSK--VVYKYL 167
>sp|Q2M2T7|RT24_BOVIN 28S ribosomal protein S24, mitochondrial OS=Bos taurus GN=MRPS24
PE=1 SV=1
Length = 167
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Query: 2 GNMLDGLRPSETAVEDEFIRRFLRGTWHNLFLSEIIIKRQHNIIRIGGIVERAIHPRKIY 61
GN+ +E VED F+R+F+ GT+ ++I+KR+ N + I +V R + K Y
Sbjct: 74 GNLDGEDHAAERTVEDVFLRKFMLGTFPGCLADQLILKRRANQVEICALVLRQLPAHKFY 133
Query: 62 FLIGYTEELLSFWLQCPVKLELQTVESKKDVVFRYI 97
FL+GY+E LLS + +CPV+L LQTV SK VV++YI
Sbjct: 134 FLVGYSETLLSHFYKCPVRLHLQTVPSK--VVYKYI 167
>sp|Q9CQV5|RT24_MOUSE 28S ribosomal protein S24, mitochondrial OS=Mus musculus GN=Mrps24
PE=2 SV=1
Length = 167
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Query: 2 GNMLDGLRPSETAVEDEFIRRFLRGTWHNLFLSEIIIKRQHNIIRIGGIVERAIHPRKIY 61
GN+ +E +ED F+R+F+ GT+ +I++KR+ N + I +V R + K Y
Sbjct: 74 GNLDGEDHAAERTLEDVFLRKFMMGTFPGCLADQIVLKRRANQVDICALVLRQLPAHKFY 133
Query: 62 FLIGYTEELLSFWLQCPVKLELQTVESKKDVVFRYI 97
FL+GY+E LLS + +CPV+L LQTV SK VV++YI
Sbjct: 134 FLVGYSETLLSHFYKCPVRLHLQTVPSK--VVYKYI 167
>sp|Q688C0|RT24_CAEEL 28S ribosomal protein S24, mitochondrial OS=Caenorhabditis elegans
GN=F33D4.8 PE=3 SV=1
Length = 164
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 67/100 (67%), Gaps = 7/100 (7%)
Query: 5 LDGLRPSETAV--EDEFIRRFLRGTW-HNLFLS--EIIIKRQHNIIRIGGIVE--RAIHP 57
L+ R S+ V +DE +RRF+RG + NL +S EI+IKR+ N++ + G ++ R +
Sbjct: 65 LEEFRQSQPLVVAQDEVVRRFIRGFFPQNLVVSGNEIVIKRRGNVLIVAGFLQYSRRLDI 124
Query: 58 RKIYFLIGYTEELLSFWLQCPVKLELQTVESKKDVVFRYI 97
R+IY++ G+ EE LS L+ PVKLE+ VES++DV + YI
Sbjct: 125 RRIYWMFGFAEEFLSILLKQPVKLEMAFVESEEDVAYNYI 164
>sp|Q61T16|RT24_CAEBR 28S ribosomal protein S24, mitochondrial OS=Caenorhabditis briggsae
GN=CBG05943 PE=3 SV=1
Length = 166
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 66/100 (66%), Gaps = 7/100 (7%)
Query: 5 LDGLRPSETAV--EDEFIRRFLRGTW-HNLFLS--EIIIKRQHNIIRIGGIVE--RAIHP 57
L+ R S+ V +DE +RRF+RG + NL +S EI+IKR+ N++ + G ++ R +
Sbjct: 67 LEEFRQSQPLVVAQDEVVRRFIRGFFPQNLVVSGNEIVIKRRGNVLIVAGFLQYSRRLDI 126
Query: 58 RKIYFLIGYTEELLSFWLQCPVKLELQTVESKKDVVFRYI 97
R+IY++ G+ EE LS L+ PVKLEL VES++ V + YI
Sbjct: 127 RRIYWMFGFAEEFLSILLKQPVKLELSFVESEETVAYNYI 166
>sp|Q2GED3|RS3_NEOSM 30S ribosomal protein S3 OS=Neorickettsia sennetsu (strain
Miyayama) GN=rpsC PE=3 SV=1
Length = 211
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 11 SETAVEDEFIRRFLRGTWHNLFLSEIIIKRQHNIIRIGGIVERAIHPRKIYFLIGYT-EE 69
++T ED F+ +++ ++ ++ +S++IIKR+ G + +H K +IG +
Sbjct: 30 AKTVAEDYFVTKYVESSFAHIGISKVIIKRK------GASCDITLHCMKPGLIIGKKGAD 83
Query: 70 LLSFWLQCPVKL----ELQTVESKK 90
L SF L+ K L VE KK
Sbjct: 84 LESFRLKLNKKFGFVPSLNVVEVKK 108
>sp|O52338|RS3_MYCGA 30S ribosomal protein S3 OS=Mycoplasma gallisepticum (strain
R(low / passage 15 / clone 2)) GN=rpsC PE=3 SV=3
Length = 263
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 15 VEDEFIRRFLRGTWHNLFLSEIIIKRQHNIIRI 47
V+DE IR +L +H+ F+S + I+R IR+
Sbjct: 35 VQDEKIRNYLFKKFHSAFISNVDIERTQTSIRV 67
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.146 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,556,004
Number of Sequences: 539616
Number of extensions: 1206175
Number of successful extensions: 3488
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3473
Number of HSP's gapped (non-prelim): 13
length of query: 97
length of database: 191,569,459
effective HSP length: 66
effective length of query: 31
effective length of database: 155,954,803
effective search space: 4834598893
effective search space used: 4834598893
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)