Query psy13055
Match_columns 97
No_of_seqs 57 out of 59
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 18:19:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14955 MRP-S24: Mitochondria 100.0 3.7E-60 8.1E-65 345.6 8.5 96 2-97 41-136 (136)
2 cd02412 30S_S3_KH K homology R 96.2 0.03 6.5E-07 38.5 6.9 72 10-87 28-107 (109)
3 cd02411 archeal_30S_S3_KH K ho 90.2 0.42 9.1E-06 31.3 3.3 69 13-87 8-84 (85)
4 TIGR01009 rpsC_bact ribosomal 88.0 0.53 1.2E-05 36.2 3.0 74 10-89 29-109 (211)
5 PRK00310 rpsC 30S ribosomal pr 85.0 0.97 2.1E-05 35.3 3.0 73 10-88 29-108 (232)
6 CHL00048 rps3 ribosomal protei 73.8 5.1 0.00011 30.9 3.8 74 10-89 29-116 (214)
7 cd02413 40S_S3_KH K homology R 68.2 6.5 0.00014 26.0 2.8 35 17-51 4-38 (81)
8 COG0092 RpsC Ribosomal protein 50.6 19 0.00041 28.8 3.2 74 10-89 18-99 (233)
9 PRK04191 rps3p 30S ribosomal p 47.5 25 0.00054 26.9 3.3 70 14-89 11-88 (207)
10 PF01382 Avidin: Avidin family 45.5 30 0.00065 24.1 3.2 43 24-67 3-49 (114)
11 COG0519 GuaA GMP synthase, PP- 44.5 8.3 0.00018 32.2 0.3 42 3-44 91-151 (315)
12 PF11391 DUF2798: Protein of u 43.1 12 0.00026 23.2 0.8 13 64-76 20-32 (60)
13 PF06996 DUF1305: Protein of u 42.0 18 0.00039 28.4 1.8 17 66-82 177-193 (303)
14 PF02830 V4R: V4R domain; Int 41.5 9.8 0.00021 23.3 0.2 24 58-81 20-43 (62)
15 COG1444 Predicted P-loop ATPas 41.3 13 0.00029 34.1 1.1 19 64-82 571-592 (758)
16 TIGR01008 rpsC_E_A ribosomal p 39.2 34 0.00075 26.3 2.9 69 15-89 10-86 (195)
17 cd02409 KH-II KH-II (K homolo 32.3 72 0.0016 18.2 3.0 45 22-70 2-46 (68)
18 PF05553 DUF761: Cotton fibre 31.9 28 0.00061 20.6 1.1 11 16-26 9-19 (38)
19 PF13718 GNAT_acetyltr_2: GNAT 31.7 29 0.00063 26.7 1.5 20 63-82 155-177 (196)
20 KOG1687|consensus 28.6 18 0.00038 27.8 -0.2 19 39-57 69-87 (168)
21 PF09966 DUF2200: Uncharacteri 28.2 12 0.00026 27.2 -1.1 23 60-82 32-54 (111)
22 TIGR03347 VI_chp_1 type VI sec 25.9 49 0.0011 26.3 1.9 15 68-82 176-190 (300)
23 PF06554 Olfactory_mark: Olfac 23.6 20 0.00043 27.2 -0.7 23 58-80 126-148 (151)
24 PF10426 zf-RAG1: Recombinatio 23.2 21 0.00045 20.5 -0.5 6 75-80 3-8 (30)
25 COG0377 NuoB NADH:ubiquinone o 23.0 32 0.00069 27.1 0.3 19 39-57 73-91 (194)
26 cd03402 Band_7_2 A subgroup of 22.8 53 0.0011 24.9 1.5 41 36-76 53-94 (219)
27 PTZ00084 40S ribosomal protein 22.5 97 0.0021 24.3 2.9 69 15-89 16-94 (220)
28 PF04300 FBA: F-box associated 20.1 1.3E+02 0.0029 22.5 3.2 32 65-96 77-123 (184)
No 1
>PF14955 MRP-S24: Mitochondrial ribosome subunit S24
Probab=100.00 E-value=3.7e-60 Score=345.59 Aligned_cols=96 Identities=71% Similarity=1.142 Sum_probs=95.4
Q ss_pred CCCCCCCCCCchhhHHHHHHHHhhccccccchheeeeeeecceEEEEEEEecccCCceEEeeecchHHHHHhhhcCcceE
Q psy13055 2 GNMLDGLRPSETAVEDEFIRRFLRGTWHNLFLSEIIIKRQHNIIRIGGIVERAIHPRKIYFLIGYTEELLSFWLQCPVKL 81 (97)
Q Consensus 2 ~nL~g~~~~~e~~~eD~fIRkFi~Gtf~~~~~sEvIIKRr~N~I~Ia~~~~~~l~~~k~YFL~GYtEelLS~~lkcpVkl 81 (97)
|||+|++|++|+++||+||||||+||||++++||||||||||+|+||++++|+++|+|||||+||||||||+||||||||
T Consensus 41 ~nL~g~~~~~e~~~eD~fIRkFi~GTf~~~l~sEiiIKRr~N~I~Ia~~~~~~l~~~k~YFL~GYtEelLS~~lkcpVKl 120 (136)
T PF14955_consen 41 SNLEGENRASERTVEDVFIRKFIRGTFPGLLASEIIIKRRHNVIRIAGIVLRRLQPRKIYFLIGYTEELLSHWLKCPVKL 120 (136)
T ss_pred cccccCCCCcchhhHHHHHHHhccCCCchhcchhhhhhhcccEEEEeEeeeccCCceeEEEehhhhHHHHHHHHCCCeEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCceeeeeC
Q psy13055 82 ELQTVESKKDVVFRYI 97 (97)
Q Consensus 82 elqtv~~k~dvv~kyI 97 (97)
|||||+||+|||||||
T Consensus 121 elqtv~~k~d~vykyi 136 (136)
T PF14955_consen 121 ELQTVESKKDVVYKYI 136 (136)
T ss_pred EEEEcCCCCceeEEeC
Confidence 9999999999999998
No 2
>cd02412 30S_S3_KH K homology RNA-binding (KH) domain of the prokaryotic 30S small ribosomal subunit protein S3. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=96.20 E-value=0.03 Score=38.49 Aligned_cols=72 Identities=24% Similarity=0.308 Sum_probs=53.4
Q ss_pred CCchhhHHHHHHHHhhccccccchheeeeeeecceEEEEEEEecccCCceEEeeecch-------HHHHHhhhc-CcceE
Q psy13055 10 PSETAVEDEFIRRFLRGTWHNLFLSEIIIKRQHNIIRIGGIVERAIHPRKIYFLIGYT-------EELLSFWLQ-CPVKL 81 (97)
Q Consensus 10 ~~e~~~eD~fIRkFi~Gtf~~~~~sEvIIKRr~N~I~Ia~~~~~~l~~~k~YFL~GYt-------EelLS~~lk-cpVkl 81 (97)
-++-..||.+||+|+.-.+...--|.+.|.|..|.|+|.--.. .|. .++|.. .+.|..++. -+|.+
T Consensus 28 y~~~l~ed~~IR~yL~k~~~~agis~I~I~R~~~~i~I~I~t~---rPg---~vIG~~G~~i~~L~~~l~~~~~~~~~~I 101 (109)
T cd02412 28 YAELLHEDLKIRKFIKKKLKKAGISRIEIERKADRVEVTIHTA---RPG---IIIGKKGAGIEKLRKELQKLLGNKKVRI 101 (109)
T ss_pred hHHHHHhHHHHHHHHHHHHhhCCccEEEEEEcCCCEEEEEEeC---CCC---cccCCchHHHHHHHHHHHHHhCCCceEE
Confidence 4567899999999999999888789999999999988755443 244 566775 245566665 56777
Q ss_pred EEEeec
Q psy13055 82 ELQTVE 87 (97)
Q Consensus 82 elqtv~ 87 (97)
.+.-|.
T Consensus 102 ~V~ev~ 107 (109)
T cd02412 102 NIVEVK 107 (109)
T ss_pred EEEEec
Confidence 776554
No 3
>cd02411 archeal_30S_S3_KH K homology RNA-binding domain (KH) of the archaeal 30S small ribosomal subunit S3 protein. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=90.22 E-value=0.42 Score=31.34 Aligned_cols=69 Identities=20% Similarity=0.211 Sum_probs=45.9
Q ss_pred hhhHHHHHHHHhhccccccchheeeeeeecceEEEEEEEecccCCceEEeeecchH-------HHHHhhhcC-cceEEEE
Q psy13055 13 TAVEDEFIRRFLRGTWHNLFLSEIIIKRQHNIIRIGGIVERAIHPRKIYFLIGYTE-------ELLSFWLQC-PVKLELQ 84 (97)
Q Consensus 13 ~~~eD~fIRkFi~Gtf~~~~~sEvIIKRr~N~I~Ia~~~~~~l~~~k~YFL~GYtE-------elLS~~lkc-pVklelq 84 (97)
-.+.|.+||+|+.-.+...-.|.|.|+|..|.+.|---. -.|. .++|-.- +.|.-++.- +|.+.+.
T Consensus 8 ~~~~~~~Ir~fl~~~~~~agIs~IeI~r~~~~i~V~I~t---~~pg---~iIGk~G~~I~~l~~~l~k~~~~~~v~I~v~ 81 (85)
T cd02411 8 EGVKRTMIDEYLEKELERAGYGGMEILRTPLGTQITIYA---ERPG---MVIGRGGKNIRELTEILETKFGLENPQIDVQ 81 (85)
T ss_pred cchHHHHHHHHHHhhhhhCcccEEEEEEcCCcEEEEEEE---CCCC---ceECCCchhHHHHHHHHHHHhCCCCceEEEE
Confidence 346899999999998888777999999999986665443 3444 3456532 234444443 4666665
Q ss_pred eec
Q psy13055 85 TVE 87 (97)
Q Consensus 85 tv~ 87 (97)
-|.
T Consensus 82 ev~ 84 (85)
T cd02411 82 EVE 84 (85)
T ss_pred Eec
Confidence 443
No 4
>TIGR01009 rpsC_bact ribosomal protein S3, bacterial type. TIGRFAMs model TIGR01008 describes S3 of the eukaryotic cytosol and of the archaea.
Probab=88.05 E-value=0.53 Score=36.18 Aligned_cols=74 Identities=23% Similarity=0.276 Sum_probs=51.4
Q ss_pred CCchhhHHHHHHHHhhccccccchheeeeeeecceEEEEEEEecccCCceEEeeecch----H---HHHHhhhcCcceEE
Q psy13055 10 PSETAVEDEFIRRFLRGTWHNLFLSEIIIKRQHNIIRIGGIVERAIHPRKIYFLIGYT----E---ELLSFWLQCPVKLE 82 (97)
Q Consensus 10 ~~e~~~eD~fIRkFi~Gtf~~~~~sEvIIKRr~N~I~Ia~~~~~~l~~~k~YFL~GYt----E---elLS~~lkcpVkle 82 (97)
-|+-..||.+||+|+.=.|...--+.+-|+|..|.+.|---. -.|. .++|-. + +.|..+++-++.+.
T Consensus 29 Y~~~l~eD~~IR~~i~k~~~~agis~IeI~rt~~~i~I~I~~---~~pg---~vIG~~g~~i~~l~~~l~~~~~~~~~i~ 102 (211)
T TIGR01009 29 YAKLLHEDLKIRNYIKKELSNAGISDVEIERPADKIRVTIHT---ARPG---IVIGKKGSEIEKLRKDLQKLTGKEVQIN 102 (211)
T ss_pred hHHHHHHHHHHHHHHHHHhhhCCcceEEEEEcCCceEEEEEe---CCCc---ceeCCCchHHHHHHHHHHHHhCCceEEE
Confidence 466889999999999977777666999999999887754333 2342 456653 2 34556566667777
Q ss_pred EEeeccC
Q psy13055 83 LQTVESK 89 (97)
Q Consensus 83 lqtv~~k 89 (97)
+.-|.+.
T Consensus 103 v~~v~~p 109 (211)
T TIGR01009 103 IAEVKRP 109 (211)
T ss_pred EEEecCC
Confidence 7666653
No 5
>PRK00310 rpsC 30S ribosomal protein S3; Reviewed
Probab=84.98 E-value=0.97 Score=35.28 Aligned_cols=73 Identities=25% Similarity=0.310 Sum_probs=50.6
Q ss_pred CCchhhHHHHHHHHhhccccccchheeeeeeecceEEEEEEEecccCCceEEeeecch-------HHHHHhhhcCcceEE
Q psy13055 10 PSETAVEDEFIRRFLRGTWHNLFLSEIIIKRQHNIIRIGGIVERAIHPRKIYFLIGYT-------EELLSFWLQCPVKLE 82 (97)
Q Consensus 10 ~~e~~~eD~fIRkFi~Gtf~~~~~sEvIIKRr~N~I~Ia~~~~~~l~~~k~YFL~GYt-------EelLS~~lkcpVkle 82 (97)
-++-..||.+||+|+.=.|...--+.+-|+|..|.|.|---.. .|. .++|-. .+.|+.+++-++.+.
T Consensus 29 Y~~~L~eD~~IRe~i~k~~~~agis~IeI~R~~~~i~I~I~~~---rP~---~iiG~~g~~i~~l~~~L~~~~~~~~~i~ 102 (232)
T PRK00310 29 YADLLHEDLKIRKFLKKKLKKAGVSRIEIERPAKRVRVTIHTA---RPG---IVIGKKGAEIEKLRKELEKLTGKPVQIN 102 (232)
T ss_pred hHHHHHHHHHHHHHHHHhHhhCceeEEEEEEcCCeEEEEEEEC---CCc---cccCCCcHHHHHHHHHHHHHhCCceEEE
Confidence 3567899999999998777776679999999999988765443 232 345542 234555565566666
Q ss_pred EEeecc
Q psy13055 83 LQTVES 88 (97)
Q Consensus 83 lqtv~~ 88 (97)
+.-|.+
T Consensus 103 v~ev~~ 108 (232)
T PRK00310 103 IVEVKK 108 (232)
T ss_pred EEEecC
Confidence 665554
No 6
>CHL00048 rps3 ribosomal protein S3
Probab=73.81 E-value=5.1 Score=30.93 Aligned_cols=74 Identities=23% Similarity=0.248 Sum_probs=50.5
Q ss_pred CCchhhHHHHHHHHhhccccccch----heeeeeeecceEEEEEEEecccCCceEEeeecch----H---HHHHhhhc--
Q psy13055 10 PSETAVEDEFIRRFLRGTWHNLFL----SEIIIKRQHNIIRIGGIVERAIHPRKIYFLIGYT----E---ELLSFWLQ-- 76 (97)
Q Consensus 10 ~~e~~~eD~fIRkFi~Gtf~~~~~----sEvIIKRr~N~I~Ia~~~~~~l~~~k~YFL~GYt----E---elLS~~lk-- 76 (97)
-++-..||..||+|+.=.|...+. +.+.|+|..|.++|.-... .|. +++|-. + +.|+.+++
T Consensus 29 y~~~l~eD~~ir~~i~~~l~~~~~~agis~i~I~r~~~~~~I~I~~~---~Pg---~vIG~~g~~i~~l~~~L~k~~~~~ 102 (214)
T CHL00048 29 YSEGLQEDKKIRDCIKNYVQKNIKYEGIARIEIQRKIDLIQVIIYTG---FPK---LLIERKGRGIEELQINLQKELNSV 102 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhCCeeEEEEEEcCCeEEEEEEEC---CCc---eEECCCcHhHHHHHHHHHHHhCCC
Confidence 456788999999999988655553 9999999999988876653 233 345552 1 23455554
Q ss_pred -CcceEEEEeeccC
Q psy13055 77 -CPVKLELQTVESK 89 (97)
Q Consensus 77 -cpVklelqtv~~k 89 (97)
-++.+++.-|.+.
T Consensus 103 ~~~i~I~v~ev~~p 116 (214)
T CHL00048 103 NRKLNINITEVKKP 116 (214)
T ss_pred CceEEEEEEEecCC
Confidence 3466777766653
No 7
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=68.19 E-value=6.5 Score=25.99 Aligned_cols=35 Identities=11% Similarity=-0.075 Sum_probs=28.7
Q ss_pred HHHHHHHhhccccccchheeeeeeecceEEEEEEE
Q psy13055 17 DEFIRRFLRGTWHNLFLSEIIIKRQHNIIRIGGIV 51 (97)
Q Consensus 17 D~fIRkFi~Gtf~~~~~sEvIIKRr~N~I~Ia~~~ 51 (97)
...||+|+.-.+...--|.+.|+|..|.++|.-..
T Consensus 4 ~~~Ire~l~k~~~~agis~IeI~Rt~~~i~I~I~t 38 (81)
T cd02413 4 YAELNEFLTRELAEDGYSGVEVRVTPTRTEIIIRA 38 (81)
T ss_pred hHHHHHHHHHHHHhCCeeeEEEEEcCCeEEEEEEe
Confidence 46799999988888777999999999998876443
No 8
>COG0092 RpsC Ribosomal protein S3 [Translation, ribosomal structure and biogenesis]
Probab=50.62 E-value=19 Score=28.81 Aligned_cols=74 Identities=24% Similarity=0.275 Sum_probs=53.7
Q ss_pred CCchhhHHHHHHHHhhccccccchheeeeeeecceEEEEEEEecccCCceEEeeecc---h----HHHHHhhhcC-cceE
Q psy13055 10 PSETAVEDEFIRRFLRGTWHNLFLSEIIIKRQHNIIRIGGIVERAIHPRKIYFLIGY---T----EELLSFWLQC-PVKL 81 (97)
Q Consensus 10 ~~e~~~eD~fIRkFi~Gtf~~~~~sEvIIKRr~N~I~Ia~~~~~~l~~~k~YFL~GY---t----EelLS~~lkc-pVkl 81 (97)
.++-.+||.-||.|+.=.+.+.=.|.+.|.|..+.++|.--.. -|. ..||= . .+.|.-.++- +|.+
T Consensus 18 ~~~~l~ed~kIre~l~k~l~~Ag~s~veIeR~~~~~~V~I~aa---rPg---~VIGk~G~~I~~L~~~l~k~~g~~~v~I 91 (233)
T COG0092 18 YAKLLVEDLKIREFLEKELSNAGISGVEIERTPKGTRVTIHAA---RPG---LVIGKKGSNIEKLRKELEKLFGKENVQI 91 (233)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCcceEEEEecCCceEEEEEeC---CCc---ceEcCCCccHHHHHHHHHHHhCCCCceE
Confidence 3467799999999999988887779999999999998865443 121 12221 1 3456667777 7888
Q ss_pred EEEeeccC
Q psy13055 82 ELQTVESK 89 (97)
Q Consensus 82 elqtv~~k 89 (97)
.++-|.+.
T Consensus 92 ~i~EV~~p 99 (233)
T COG0092 92 NIEEVKKP 99 (233)
T ss_pred EEEEcCCC
Confidence 88888764
No 9
>PRK04191 rps3p 30S ribosomal protein S3P; Reviewed
Probab=47.51 E-value=25 Score=26.91 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=45.7
Q ss_pred hhHHHHHHHHhhccccccchheeeeeeecceEEEEEEEecccCCceEEeeecch----H---HHHHhhhcC-cceEEEEe
Q psy13055 14 AVEDEFIRRFLRGTWHNLFLSEIIIKRQHNIIRIGGIVERAIHPRKIYFLIGYT----E---ELLSFWLQC-PVKLELQT 85 (97)
Q Consensus 14 ~~eD~fIRkFi~Gtf~~~~~sEvIIKRr~N~I~Ia~~~~~~l~~~k~YFL~GYt----E---elLS~~lkc-pVklelqt 85 (97)
.+-+..||+|+.-.|.+.-.|.|.|+|..|.++|---. -.|. .++|=. | ++|..++.- +|.+.+.-
T Consensus 11 ~~~~~~irefi~~~~~~AgIs~IeI~Rt~~~i~I~I~t---a~PG---ivIGk~G~~I~klk~~Lkk~~~~~~v~I~v~e 84 (207)
T PRK04191 11 GLKKVMIDEYLAKELYRAGYGGMEIKKTPLGTRITIYA---ERPG---MVIGRGGKNIRELTEILEKKFGLENPQIDVKE 84 (207)
T ss_pred chHHHHHHHHHHhhhhhcceeEEEEEEcCCcEEEEEEE---CCCC---eEECCCchhHHHHHHHHHHHhCCCceeEEEEE
Confidence 35678899999988888777999999988886664443 2343 445653 2 234444432 47777766
Q ss_pred eccC
Q psy13055 86 VESK 89 (97)
Q Consensus 86 v~~k 89 (97)
|.+.
T Consensus 85 v~~p 88 (207)
T PRK04191 85 VENP 88 (207)
T ss_pred EeCC
Confidence 6653
No 10
>PF01382 Avidin: Avidin family; InterPro: IPR005468 Avidin [] is a minor constituent of egg white in several groups of oviparous vertebrates. Avidin, which was discovered in the 1920's, takes its name from the avidity with which it binds biotin. These two molecules bind so strongly that is extremely difficult to separate them. Streptavidin is a protein produced by Streptomyces avidinii which also binds biotin and whose sequence is evolutionary related to that of avidin. Avidin and streptavidin both form homotetrameric complexes of noncovalently associated chains. Each chain forms a very strong and specific non-covalent complex with one molecule of biotin. The three-dimensional structures of both streptavidin [, ] and avidin [] have been determined and revealed them to share a common fold: an eight stranded anti-parallel beta-barrel with a repeated +1 topology enclosing an internal ligand binding site. Fibropellins I and III [] are proteins that form the apical lamina of the sea urchin embryo, a component of the extracellular matrix. These two proteins have a modular structure composed of a CUB domain (seePDOC00908 from PROSITEDOC), followed by a variable number of EGF repeats and a C-terminal avidin-like domain.; PDB: 2OF9_B 2FHL_B 3MM0_G 1Y55_Y 1Y52_Y 1Y53_X 2OF8_A 2FHN_X 2OFA_A 2OFB_B ....
Probab=45.46 E-value=30 Score=24.12 Aligned_cols=43 Identities=33% Similarity=0.471 Sum_probs=32.4
Q ss_pred hhccccccchheeeeeeecceEEEEEEEecccCC----ceEEeeecch
Q psy13055 24 LRGTWHNLFLSEIIIKRQHNIIRIGGIVERAIHP----RKIYFLIGYT 67 (97)
Q Consensus 24 i~Gtf~~~~~sEvIIKRr~N~I~Ia~~~~~~l~~----~k~YFL~GYt 67 (97)
+.|+|.+.+-|++.|.-..+- .|.|...-++.. .+.|-|+||.
T Consensus 3 l~G~W~Ne~GS~m~I~~~~~G-~i~G~Y~tav~~~~~~~~~~pl~G~~ 49 (114)
T PF01382_consen 3 LSGTWYNELGSTMTITVDSTG-AISGTYTTAVGSSSGAGGPYPLVGYA 49 (114)
T ss_dssp HCEEEEETTSEEEEEEEETTS-EEEEEEEESSSSSSSCSSEEEEEEEE
T ss_pred CceEEEeCCCCEEEEEECCCC-eEEEEEECCccccccCCCccceeEEe
Confidence 469999999999999984444 455666545443 4889999998
No 11
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=44.55 E-value=8.3 Score=32.25 Aligned_cols=42 Identities=31% Similarity=0.479 Sum_probs=31.7
Q ss_pred CCCCCCCCCc--hhhHHHHHHHH------------hhcc-ccccchhe----eeeeeecce
Q psy13055 3 NMLDGLRPSE--TAVEDEFIRRF------------LRGT-WHNLFLSE----IIIKRQHNI 44 (97)
Q Consensus 3 nL~g~~~~~e--~~~eD~fIRkF------------i~Gt-f~~~~~sE----vIIKRr~N~ 44 (97)
.|+|-.-|.+ .++.++||+-| ..|| ||+-+.|. -.||-.||+
T Consensus 91 ~L~GvtDPE~KRKiIG~~FI~VFe~ea~k~~~~~LaQGTiYpDvIES~~g~~~~IKSHHNV 151 (315)
T COG0519 91 ALKGVTDPEEKRKIIGREFIEVFEEEAKKLGAEFLAQGTIYPDVIESGTGKAGTIKSHHNV 151 (315)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHhCCcceEEecccccceeeecCCCCCcccccccc
Confidence 3444444433 57788888877 5799 99999888 999999996
No 12
>PF11391 DUF2798: Protein of unknown function (DUF2798); InterPro: IPR021529 This family of proteins has no known function.
Probab=43.09 E-value=12 Score=23.18 Aligned_cols=13 Identities=31% Similarity=1.048 Sum_probs=12.0
Q ss_pred ecchHHHHHhhhc
Q psy13055 64 IGYTEELLSFWLQ 76 (97)
Q Consensus 64 ~GYtEelLS~~lk 76 (97)
.|++|++++.|++
T Consensus 20 ~G~~~~f~~~Wl~ 32 (60)
T PF11391_consen 20 VGFSDGFFSRWLK 32 (60)
T ss_pred hCCchhHHHHHHH
Confidence 6999999999987
No 13
>PF06996 DUF1305: Protein of unknown function (DUF1305); InterPro: IPR010732 This entry consists of several hypothetical bacterial proteins of around 300 residues in length. Their function is unknown although they are associated with type VI secretion loci, suggesting a role in virulence [, ].
Probab=42.01 E-value=18 Score=28.37 Aligned_cols=17 Identities=41% Similarity=0.643 Sum_probs=15.1
Q ss_pred chHHHHHhhhcCcceEE
Q psy13055 66 YTEELLSFWLQCPVKLE 82 (97)
Q Consensus 66 YtEelLS~~lkcpVkle 82 (97)
--|.+||+++++||+++
T Consensus 177 ~L~~lLs~~f~~~V~V~ 193 (303)
T PF06996_consen 177 GLEQLLSHYFGVPVEVE 193 (303)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 35899999999999987
No 14
>PF02830 V4R: V4R domain; InterPro: IPR004096 Central cellular functions such as metabolism, solute transport and signal transduction are regulated, in part, via binding of small molecules by specialised domains. The 4-vinyl reductase (4VR) domain is a predicted small molecular binding domain, that may bind to hydrocarbons []. Proteins that contain this domain include a regulator of the phenol catabolic pathway and a protein involved in chlorophyll biosynthesis.; PDB: 2OSD_A 2OSO_A.
Probab=41.51 E-value=9.8 Score=23.27 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=19.4
Q ss_pred ceEEeeecchHHHHHhhhcCcceE
Q psy13055 58 RKIYFLIGYTEELLSFWLQCPVKL 81 (97)
Q Consensus 58 ~k~YFL~GYtEelLS~~lkcpVkl 81 (97)
.-=||..||-+.++|.+++.+|+.
T Consensus 20 p~C~~~~G~~~G~~~~~~~~~~~v 43 (62)
T PF02830_consen 20 PVCWFTAGYLAGFFSALFGKEVEV 43 (62)
T ss_dssp ---HHHHHHHHHHHHHHHSSEEEE
T ss_pred ceEHHHHHHHHHHHHHHhCCceEE
Confidence 334789999999999999999875
No 15
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=41.28 E-value=13 Score=34.05 Aligned_cols=19 Identities=68% Similarity=1.289 Sum_probs=16.1
Q ss_pred ecchHHHHHhhhcC---cceEE
Q psy13055 64 IGYTEELLSFWLQC---PVKLE 82 (97)
Q Consensus 64 ~GYtEelLS~~lkc---pVkle 82 (97)
+||||+|+..|.|| ||.|-
T Consensus 571 FG~t~~L~rFW~rnGF~pVhls 592 (758)
T COG1444 571 FGYTEELLRFWLRNGFVPVHLS 592 (758)
T ss_pred cCCCHHHHHHHHHcCeEEEEec
Confidence 79999999999998 55553
No 16
>TIGR01008 rpsC_E_A ribosomal protein S3, eukaryotic/archaeal type. This model describes ribosomal protein S3 of the eukaryotic cytosol and of the archaea. TIGRFAMs model TIGR01009 describes the bacterial/organellar type, although the organellar types have a different architecture with long insertions and may score poorly.
Probab=39.22 E-value=34 Score=26.26 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=47.5
Q ss_pred hHHHHHHHHhhccccccchheeeeeeecceEEEEEEEecccCCceEEeeecchH-------HHHHhhhcC-cceEEEEee
Q psy13055 15 VEDEFIRRFLRGTWHNLFLSEIIIKRQHNIIRIGGIVERAIHPRKIYFLIGYTE-------ELLSFWLQC-PVKLELQTV 86 (97)
Q Consensus 15 ~eD~fIRkFi~Gtf~~~~~sEvIIKRr~N~I~Ia~~~~~~l~~~k~YFL~GYtE-------elLS~~lkc-pVklelqtv 86 (97)
+-+..||+|+.-.++..--|.+.|+|..|.++|.--.. .|. .++|-.. +.|..++.- ++.+.+.-|
T Consensus 10 ~~~~~ire~l~k~~~~agis~ieI~r~~~~~~I~I~~~---rPg---~vIG~~g~~i~~l~~~l~k~~~~~~~~I~v~ev 83 (195)
T TIGR01008 10 LKRTLIDEFLKKELREAGYSGVDVRVTPLGTKVIIFAE---RPG---LVIGRGGRRIRELTEKLQKKFGLENPQIDVEEV 83 (195)
T ss_pred hHHHHHHHHHHHHHHhCCeeEEEEEEcCCcEEEEEEEC---CCc---eEECCCchHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 46788999999888887789999999999888754433 343 3455531 234444432 577777777
Q ss_pred ccC
Q psy13055 87 ESK 89 (97)
Q Consensus 87 ~~k 89 (97)
.+.
T Consensus 84 ~~p 86 (195)
T TIGR01008 84 ENP 86 (195)
T ss_pred eCC
Confidence 764
No 17
>cd02409 KH-II KH-II (K homology RNA-binding domain, type II). KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins (e.g. ribosomal protein S3), transcription factors (e.g. NusA_K), and post-transcriptional modifiers of mRNA (e.g. hnRNP K). There are two different KH domains that belong to different protein folds, but they share a single KH motif. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In addition to their KH core domain, KH-II proteins have an N-terminal alpha helical extension while KH-I proteins have a C-terminal alpha helical extension.
Probab=32.26 E-value=72 Score=18.19 Aligned_cols=45 Identities=27% Similarity=0.337 Sum_probs=26.3
Q ss_pred HHhhccccccchheeeeeeecceEEEEEEEecccCCceEEeeecchHHH
Q psy13055 22 RFLRGTWHNLFLSEIIIKRQHNIIRIGGIVERAIHPRKIYFLIGYTEEL 70 (97)
Q Consensus 22 kFi~Gtf~~~~~sEvIIKRr~N~I~Ia~~~~~~l~~~k~YFL~GYtEel 70 (97)
+|+...+...-.+++-|+|..|...+-...... +|. .++|...+-
T Consensus 2 ~~l~~~~~~~~i~~i~i~~~~~~~~~~i~~~~~-~~g---~lIGk~G~~ 46 (68)
T cd02409 2 EFLKKLLAPAGISGVEIERTPDRIEIIIVVARG-QPG---LVIGKKGQN 46 (68)
T ss_pred hHHHHHHHHCCCCeEEEEEcCCcEEEEEEECCC-CCc---eEECCCCcc
Confidence 344444444456889999987666665554444 444 566765443
No 18
>PF05553 DUF761: Cotton fibre expressed protein; InterPro: IPR008480 This family consists of several plant proteins of unknown function. Three of the sequences from Gossypium hirsutum (Upland cotton) in this family are described as G. hirsutum fibre expressed proteins []. The remaining sequences, found in Arabidopsis thaliana, are uncharacterised.
Probab=31.89 E-value=28 Score=20.60 Aligned_cols=11 Identities=36% Similarity=0.715 Sum_probs=8.2
Q ss_pred HHHHHHHHhhc
Q psy13055 16 EDEFIRRFLRG 26 (97)
Q Consensus 16 eD~fIRkFi~G 26 (97)
-|.||+||=..
T Consensus 9 Ae~FI~~f~~q 19 (38)
T PF05553_consen 9 AEEFIAKFREQ 19 (38)
T ss_pred HHHHHHHHHHH
Confidence 47899998554
No 19
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=31.72 E-value=29 Score=26.69 Aligned_cols=20 Identities=50% Similarity=0.806 Sum_probs=14.0
Q ss_pred eecchHHHHHhhhcC---cceEE
Q psy13055 63 LIGYTEELLSFWLQC---PVKLE 82 (97)
Q Consensus 63 L~GYtEelLS~~lkc---pVkle 82 (97)
-+|+|++||..|.|| ||.|-
T Consensus 155 SFG~t~~Ll~FW~k~gf~pv~l~ 177 (196)
T PF13718_consen 155 SFGATPELLKFWQKNGFVPVYLG 177 (196)
T ss_dssp EEE--HHHHHHHHCTT-EEEEE-
T ss_pred ccCCCHHHHHHHHHCCcEEEEEe
Confidence 379999999999998 55543
No 20
>KOG1687|consensus
Probab=28.56 E-value=18 Score=27.80 Aligned_cols=19 Identities=26% Similarity=0.581 Sum_probs=17.1
Q ss_pred eeecceEEEEEEEecccCC
Q psy13055 39 KRQHNIIRIGGIVERAIHP 57 (97)
Q Consensus 39 KRr~N~I~Ia~~~~~~l~~ 57 (97)
-||...|.+||.+..++.|
T Consensus 69 PRQaD~iivAGTlTnKMAP 87 (168)
T KOG1687|consen 69 PRQADLIIVAGTLTNKMAP 87 (168)
T ss_pred CccccEEEEeccchhhhcH
Confidence 4899999999999988887
No 21
>PF09966 DUF2200: Uncharacterized protein conserved in bacteria (DUF2200); InterPro: IPR014580 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3C9P_A.
Probab=28.17 E-value=12 Score=27.19 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=14.4
Q ss_pred EEeeecchHHHHHhhhcCcceEE
Q psy13055 60 IYFLIGYTEELLSFWLQCPVKLE 82 (97)
Q Consensus 60 ~YFL~GYtEelLS~~lkcpVkle 82 (97)
+-||.||+++=|..++...+.+|
T Consensus 32 i~WLTGy~~~~l~~~~~~~~~~~ 54 (111)
T PF09966_consen 32 IRWLTGYDQEELQAQIESKVTFE 54 (111)
T ss_dssp HHHHH---HHHHHHHTTS--BHH
T ss_pred HHHHhcCCHHHHHHHHHcCCCHH
Confidence 45999999999998887776654
No 22
>TIGR03347 VI_chp_1 type VI secretion protein, VC_A0111 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=25.86 E-value=49 Score=26.26 Aligned_cols=15 Identities=33% Similarity=0.680 Sum_probs=13.7
Q ss_pred HHHHHhhhcCcceEE
Q psy13055 68 EELLSFWLQCPVKLE 82 (97)
Q Consensus 68 EelLS~~lkcpVkle 82 (97)
|.+||+.+++||+++
T Consensus 176 ~~lL~~~f~~~V~V~ 190 (300)
T TIGR03347 176 AALLAHYFGVPVTVE 190 (300)
T ss_pred HHHHHHHcCCCcEEE
Confidence 799999999999985
No 23
>PF06554 Olfactory_mark: Olfactory marker protein; InterPro: IPR009103 Olfactory marker protein (OMP) is a highly expressed, cytoplasmic protein found in mature olfactory sensory receptor neurons of all vertebrates. OMP is a modulator of the olfactory signal transduction cascade. The crystal structure of OMP reveals a beta sandwich consisting of eight strands in two sheets with a jelly-roll topology []. Three highly conserved regions have been identified as possible protein-protein interaction sites in OMP, indicating a possible role for OMP in modulating such interactions, thereby acting as a molecular switch [].; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0007608 sensory perception of smell; PDB: 1ZRI_A 1JYT_A 1JOD_B 1F35_A 1JOB_A.
Probab=23.64 E-value=20 Score=27.19 Aligned_cols=23 Identities=26% Similarity=0.626 Sum_probs=14.9
Q ss_pred ceEEeeecchHHHHHhhhcCcce
Q psy13055 58 RKIYFLIGYTEELLSFWLQCPVK 80 (97)
Q Consensus 58 ~k~YFL~GYtEelLS~~lkcpVk 80 (97)
.-||||+.|+|-.=-.-++|-|.
T Consensus 126 KVMYFl~af~dG~epa~~~cSi~ 148 (151)
T PF06554_consen 126 KVMYFLIAFKDGAEPANLKCSIV 148 (151)
T ss_dssp TEEEEEEEE-TTS-CCCEEEEEE
T ss_pred hhheeeeeeccCCCcccceEEEE
Confidence 35899999998766555555543
No 24
>PF10426 zf-RAG1: Recombination-activating protein 1 zinc-finger domain; InterPro: IPR019485 During lymphocyte development, the genes encoding immunoglobulins and T-cell receptors are assembled from variable (V), diversity (D), and joining (J) gene segments. This combinatorial process, known as V(D)J recombination, allows the generation of an enormous range of binding specificities from a limited amount of genetic information. The V(D)J recombination-activating proteins 1 and 2 (RAG1 and RAG2) form a complex that initiates this process by binding to the conserved recombination signal sequences (RSS) and introducing a double-strand break between the RSS and the adjacent coding segment. These breaks are generated in two steps, nicking of one strand (hydrolysis), followed by hairpin formation (transesterification). RAG1/2 has also been shown to function as a transposase in vitro, and to possess RSS-independent endonuclease activity (end processing) and hairpin opening. RAG1 alone can bind to RSS but stable, efficient binding requires RAG2. All known catalytic activities require the presence of both proteins. For more information see []. Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc-finger domain found in the RAG1 protein. The structure contains the characteristic two-stranded beta-sheet and alpha-helix of a classical zinc-finger. The domain binds one zinc and, in complex with an adjacent RING-type zinc finger domain, helps to stabilise the whole of the dimerisation region of recombination activating protein 1 (RAG1) []. The function of the whole is to bind double-stranded DNA. ; GO: 0016788 hydrolase activity, acting on ester bonds, 0016881 acid-amino acid ligase activity; PDB: 1RMD_A.
Probab=23.16 E-value=21 Score=20.52 Aligned_cols=6 Identities=67% Similarity=1.608 Sum_probs=3.1
Q ss_pred hcCcce
Q psy13055 75 LQCPVK 80 (97)
Q Consensus 75 lkcpVk 80 (97)
++||||
T Consensus 3 vrCPvk 8 (30)
T PF10426_consen 3 VRCPVK 8 (30)
T ss_dssp EE--ST
T ss_pred cccccc
Confidence 689986
No 25
>COG0377 NuoB NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases [Energy production and conversion]
Probab=23.02 E-value=32 Score=27.08 Aligned_cols=19 Identities=21% Similarity=0.555 Sum_probs=16.7
Q ss_pred eeecceEEEEEEEecccCC
Q psy13055 39 KRQHNIIRIGGIVERAIHP 57 (97)
Q Consensus 39 KRr~N~I~Ia~~~~~~l~~ 57 (97)
-||.|.++|||.+.++..|
T Consensus 73 PRQaDvmIvaGt~t~Kmap 91 (194)
T COG0377 73 PRQADLMIVAGTLTNKMAP 91 (194)
T ss_pred cccccEEEEeccchHHHHH
Confidence 5999999999999977765
No 26
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=22.80 E-value=53 Score=24.93 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=32.0
Q ss_pred eeeeeecceEEEEEEEeccc-CCceEEeeecchHHHHHhhhc
Q psy13055 36 IIIKRQHNIIRIGGIVERAI-HPRKIYFLIGYTEELLSFWLQ 76 (97)
Q Consensus 36 vIIKRr~N~I~Ia~~~~~~l-~~~k~YFL~GYtEelLS~~lk 76 (97)
-++=+.+|.|.|++.+..++ +|.|++|=+.--++.|+....
T Consensus 53 ~v~T~D~~~v~V~~~V~~rV~Dp~ka~~~v~~~~~~l~~~~~ 94 (219)
T cd03402 53 KVNDANGNPIEIAAVIVWRVVDTAKAVFNVDDYEEFVHIQSE 94 (219)
T ss_pred eeEcCCCCEEEEEEEEEEEEcCHHHHHHHcCCHHHHHHHHHH
Confidence 36778899999999999888 799998866644777766543
No 27
>PTZ00084 40S ribosomal protein S3; Provisional
Probab=22.51 E-value=97 Score=24.31 Aligned_cols=69 Identities=19% Similarity=0.079 Sum_probs=44.7
Q ss_pred hHHHHHHHHhhccccccchheeeeeeecceEEEEEEEecccCCceEEeeecch----H---HHHHhhhc---CcceEEEE
Q psy13055 15 VEDEFIRRFLRGTWHNLFLSEIIIKRQHNIIRIGGIVERAIHPRKIYFLIGYT----E---ELLSFWLQ---CPVKLELQ 84 (97)
Q Consensus 15 ~eD~fIRkFi~Gtf~~~~~sEvIIKRr~N~I~Ia~~~~~~l~~~k~YFL~GYt----E---elLS~~lk---cpVklelq 84 (97)
+.+..||+|+.=.+...--|.+.|+|..|.++|.-... .|. .++|-. | +.|..++. -.|.+.+.
T Consensus 16 ~~~~~~re~l~k~~~~agis~ieI~Rt~~~i~V~I~ta---rPg---~vIG~~G~~i~~l~~~L~k~~~~~~~~i~i~v~ 89 (220)
T PTZ00084 16 VFYAELNEFLSRELAEDGYSGVEVRVTPIRTEIIIRAT---RTR---EVLGDKGRRIRELTSLLQKRFGFPEGKVELFAE 89 (220)
T ss_pred hhhHHHHHHHHHHHHHCCcceEEEEEcCCcEEEEEEEC---CCc---cEEcCCchHHHHHHHHHHHHhCCCCceEEEEEE
Confidence 45678899998777776679999999999888765443 243 445652 1 33555554 34555556
Q ss_pred eeccC
Q psy13055 85 TVESK 89 (97)
Q Consensus 85 tv~~k 89 (97)
-|.+.
T Consensus 90 ev~~P 94 (220)
T PTZ00084 90 RVENR 94 (220)
T ss_pred EecCC
Confidence 65543
No 28
>PF04300 FBA: F-box associated region; InterPro: IPR007397 Proteins containing this domain are associated with F-box domains (IPR001810 from INTERPRO), hence the name FBA. This domain is probably involved in binding other proteins that will be targeted for ubiquitination. Q9UK22 from SWISSPROT is involved in binding to N-glycosylated proteins.; GO: 0030163 protein catabolic process; PDB: 1UMI_A 2RJ2_A 2E33_A 1UMH_A 2E32_A 2E31_A.
Probab=20.13 E-value=1.3e+02 Score=22.52 Aligned_cols=32 Identities=31% Similarity=0.622 Sum_probs=20.0
Q ss_pred cchHHHHHhh---------------hcCcceEEEEeeccCCceeeee
Q psy13055 65 GYTEELLSFW---------------LQCPVKLELQTVESKKDVVFRY 96 (97)
Q Consensus 65 GYtEelLS~~---------------lkcpVklelqtv~~k~dvv~ky 96 (97)
||.+|||-.. -+|--.|.+|.++.++.++-.+
T Consensus 77 G~~~~lLD~~qP~I~isdWy~~r~dc~~~Y~l~V~Lld~~~~vi~~f 123 (184)
T PF04300_consen 77 GYWPELLDSFQPEITISDWYAGRFDCGCVYELHVQLLDANKNVIAEF 123 (184)
T ss_dssp T--HHHHHHT--EEEEEEEEE--SSS-EEEEEEEEEEETTTEEEEEE
T ss_pred cCCHHHhcCCCCCEEEEEEEeccCCcCcEEEEEEEECcCCCcEEEEE
Confidence 7889999764 3455567777777777776543
Done!