RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13055
         (97 letters)



>d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain
          {Escherichia coli [TaxId: 562]}
          Length = 105

 Score = 24.8 bits (54), Expect = 1.2
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 16 EDEFIRRFLRGTWHNLFLSEIIIKRQHNIIRIGGIVERAIHPRKIYFLIG 65
           D  +R++L        +S I+I+R    IR+       IH  +   +IG
Sbjct: 34 SDFKVRQYLTKELAKASVSRIVIERPAKSIRV------TIHTARPGIVIG 77


>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA
           {Escherichia coli [TaxId: 562]}
          Length = 456

 Score = 24.5 bits (52), Expect = 2.6
 Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 1/58 (1%)

Query: 21  RRFLRGTWHNLFLSEIIIKRQHNIIRIGGIVERAIHPRKIYFLIGYTEELLSFWLQCP 78
                  +H L      ++++    RIG  +       +I+  +   + LL       
Sbjct: 124 DIIWIHDYH-LLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYD 180


>d1avgi_ b.60.1.3 (I:) Thrombin inhibitor {Triatomine bug
          (Triatoma pallidipennis) [TaxId: 30077]}
          Length = 142

 Score = 23.5 bits (50), Expect = 4.2
 Identities = 7/20 (35%), Positives = 9/20 (45%)

Query: 10 PSETAVEDEFIRRFLRGTWH 29
            E A+ D     F  GTW+
Sbjct: 7  SIEKAMGDFKPEEFFNGTWY 26


>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans
          [TaxId: 6239]}
          Length = 395

 Score = 24.0 bits (51), Expect = 4.3
 Identities = 9/32 (28%), Positives = 11/32 (34%)

Query: 9  RPSETAVEDEFIRRFLRGTWHNLFLSEIIIKR 40
           P           RFL G W  + L  + I R
Sbjct: 18 IPELKERAHMLCARFLGGAWKTVPLEHLRISR 49


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.146    0.445 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 403,128
Number of extensions: 18359
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 12
Length of query: 97
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 38
Effective length of database: 1,597,526
Effective search space: 60705988
Effective search space used: 60705988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.1 bits)