BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13058
(238 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P2B1|TNPO3_MOUSE Transportin-3 OS=Mus musculus GN=Tnpo3 PE=1 SV=1
Length = 923
Score = 160 bits (405), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 107/267 (40%), Positives = 155/267 (58%), Gaps = 48/267 (17%)
Query: 3 SQPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEM 62
++P+L VY V LY +P+ + KE+AS WL +LQ+S++AW+I+D++L
Sbjct: 4 AKPTLQLVYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLL------------ 51
Query: 63 LLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQ 122
Q +E+ YF+AQTM+ K+Q +F+ELP++SH SLRDSL+ H+ D S I+TQ
Sbjct: 52 ---QIRQDVESCYFAAQTMKMKIQTSFYELPTDSHASLRDSLLTHIQNLKDLS-PVIVTQ 107
Query: 123 LALALADLALQMSAWEKPVVYIIEKLSHK-GSILALLEVLTVLPEEVN--VLKLGKNRRE 179
LALA+ADLALQM +W+ V ++EK S+ S+ LLE+LTVLPEEV+ L++G NRR
Sbjct: 108 LALAIADLALQMPSWKGCVQTLVEKYSNDVTSLPFLLEILTVLPEEVHSRSLRIGANRRT 167
Query: 180 EFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSW------------------- 220
E E+L V+ L TC G + + KV +C SW
Sbjct: 168 EIIEDLAFYSSTVVSLLMTCVEKAGTDEKMLMKVFRCLGSWFNLGVLDSNFMANNKLLAL 227
Query: 221 ---------SSGSLHDAATDCV-SALH 237
+S +LH+AA+DCV SAL+
Sbjct: 228 LFEVLQQDKTSSNLHEAASDCVCSALY 254
>sp|Q9Y5L0|TNPO3_HUMAN Transportin-3 OS=Homo sapiens GN=TNPO3 PE=1 SV=3
Length = 923
Score = 160 bits (404), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 107/267 (40%), Positives = 155/267 (58%), Gaps = 48/267 (17%)
Query: 3 SQPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEM 62
++P+L VY V LY +P+ + KE+AS WL +LQ+S++AW+I+D++L
Sbjct: 4 AKPTLQLVYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLL------------ 51
Query: 63 LLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQ 122
Q +E+ YF+AQTM+ K+Q +F+ELP++SH SLRDSL+ H+ D S I+TQ
Sbjct: 52 ---QIRQDVESCYFAAQTMKMKIQTSFYELPTDSHASLRDSLLTHIQNLKDLS-PVIVTQ 107
Query: 123 LALALADLALQMSAWEKPVVYIIEKLSHK-GSILALLEVLTVLPEEVN--VLKLGKNRRE 179
LALA+ADLALQM +W+ V ++EK S+ S+ LLE+LTVLPEEV+ L++G NRR
Sbjct: 108 LALAIADLALQMPSWKGCVQTLVEKYSNDVTSLPFLLEILTVLPEEVHSRSLRIGANRRT 167
Query: 180 EFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSW------------------- 220
E E+L V+ L TC G + + KV +C SW
Sbjct: 168 EIIEDLAFYSSTVVSLLMTCVEKAGTDEKMLMKVFRCLGSWFNLGVLDSNFMANNKLLAL 227
Query: 221 ---------SSGSLHDAATDCV-SALH 237
+S +LH+AA+DCV SAL+
Sbjct: 228 LFEVLQQDKTSSNLHEAASDCVCSALY 254
>sp|Q9USZ2|YNR7_SCHPO Uncharacterized protein C11G11.07 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC11G11.07 PE=4 SV=2
Length = 955
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 106/195 (54%), Gaps = 20/195 (10%)
Query: 7 LDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQ 66
++T+ + + TLY N ++ +K +A+ +L + QKS AW+I +L+Q
Sbjct: 1 METLLSALATLYANTDREQKLQANNYLEEFQKSPAAWQICFS--------------ILNQ 46
Query: 67 NELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALA 126
++ +EA F+AQT+RQK+ F +LP E+H+ R+SL++ D S + ++ LA+
Sbjct: 47 DDSSIEAKLFAAQTLRQKIVYDFHQLPKETHIEFRNSLLQLFLAAKD-SPRPLLVSLAVC 105
Query: 127 LADLALQMSAWEKPVVYIIEKLSHKG-SILALLEVLTVLPEEVNVLKLGKNRREEF---- 181
+A +AL M+ W + + + S K S +L+ L+VLPEE + + EE
Sbjct: 106 MAAIALHMTEWHNVIADVFQACSSKDPSGRCVLQFLSVLPEEASDPRKTSLSWEELCIRV 165
Query: 182 EEELKAAGPIVIEFL 196
+E L+ GP V+E L
Sbjct: 166 DELLRDNGPAVLELL 180
>sp|Q99189|MTR10_YEAST mRNA transport regulator MTR10 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MTR10 PE=1 SV=1
Length = 972
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 104/211 (49%), Gaps = 29/211 (13%)
Query: 22 NKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTM 81
++ +K KA Q+L Q Q+S AW I +E+L D N L LE F+AQT+
Sbjct: 21 SQDDKNKALQFLEQFQRSTVAWSICNEILSK------EDPT----NAL-LELNIFAAQTL 69
Query: 82 RQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEKPV 141
R KV +L + +DSL+ L N K IITQL +ALA LA+Q W+ P+
Sbjct: 70 RNKVTYDLSQL-ENNLPQFKDSLLTLLLSHNQ---KLIITQLNVALARLAIQFLEWQNPI 125
Query: 142 VYIIEKLSHKGSILALLEVLTVLPEEVNVLKLGKNRREEFEEEL-KAAGPI---VIEFLK 197
II L+ SI LL L +LPEE + EF + + PI V++FL
Sbjct: 126 FEIISLLNSSPSI--LLNFLRILPEETLDIASTSLTEVEFNSRIHELIDPIAEDVLKFLV 183
Query: 198 TC-------QANCGDNVSLQTKVLKCFTSWS 221
+C N ++SL+ ++L+C SWS
Sbjct: 184 SCIDLLQNTDGNSSSSISLE-QILRCLNSWS 213
>sp|A7YWD2|IPO13_BOVIN Importin-13 OS=Bos taurus GN=IPO13 PE=2 SV=1
Length = 963
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 25/224 (11%)
Query: 6 SLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLH 65
+++ V +H LY +PN K A +WL Q Q S AW ++W+ LL
Sbjct: 22 TVENVEKALHQLYYDPNIENKNLAQKWLMQAQASPQAWH---------FSWQ-----LLQ 67
Query: 66 QNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLAL 125
+++ E YF A + K+ + ++P++ + SL+ L + R S K ++T+L +
Sbjct: 68 PDKVP-EIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGS-KIVLTRLCV 125
Query: 126 ALADLALQM--SAWEKPVVYIIE-------KLSHKGSILALLEVLTVLPEEVNVLKLGKN 176
ALA LAL M AW V ++ + +G LALLE+LTVLPEE +L +
Sbjct: 126 ALASLALSMMPDAWPCAVADMVRLFQAEDSPVDSQGRCLALLELLTVLPEEFQTSRLPQY 185
Query: 177 RREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSW 220
R+ L V L+ ++ KVLKCF+SW
Sbjct: 186 RKSLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSW 229
>sp|Q8K0C1|IPO13_MOUSE Importin-13 OS=Mus musculus GN=Ipo13 PE=2 SV=1
Length = 963
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 25/224 (11%)
Query: 6 SLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLH 65
+++ V +H LY +PN K A +WL Q Q S AW ++W+ LL
Sbjct: 22 TVENVEKALHQLYYDPNIDNKNLAQKWLMQAQVSPQAWH---------FSWQ-----LLQ 67
Query: 66 QNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLAL 125
+++ E YF A + K+ + ++P++ + SL+ L + R S K ++T+L +
Sbjct: 68 PDKVP-EIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGS-KIVLTRLCV 125
Query: 126 ALADLALQM--SAWEKPVVYIIE-------KLSHKGSILALLEVLTVLPEEVNVLKLGKN 176
ALA LAL M AW V ++ + +G LALLE+LTVLPEE +L +
Sbjct: 126 ALASLALSMMPDAWPCAVADMVRLFQAEDSPVDSQGRCLALLELLTVLPEEFQTSRLPQY 185
Query: 177 RREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSW 220
R+ L V L+ ++ KVLKCF+SW
Sbjct: 186 RKGLVRTSLAVECGTVFPLLEQLLQQPSSPSCVRQKVLKCFSSW 229
>sp|O94829|IPO13_HUMAN Importin-13 OS=Homo sapiens GN=IPO13 PE=1 SV=3
Length = 963
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 25/224 (11%)
Query: 6 SLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLH 65
+++ V +H LY +PN K A +WL Q Q S AW ++W+ LL
Sbjct: 22 TVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWH---------FSWQ-----LLQ 67
Query: 66 QNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLAL 125
+++ E YF A + K+ + ++P++ + SL+ L + R S K ++T+L +
Sbjct: 68 PDKVP-EIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGS-KIVLTRLCV 125
Query: 126 ALADLALQM--SAWEKPVVYIIE-------KLSHKGSILALLEVLTVLPEEVNVLKLGKN 176
ALA LAL M AW V ++ + +G LALLE+LTVLPEE +L +
Sbjct: 126 ALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQY 185
Query: 177 RREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSW 220
R+ L V L+ ++ KVLKCF+SW
Sbjct: 186 RKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSW 229
>sp|Q5R974|IPO13_PONAB Importin-13 OS=Pongo abelii GN=IPO13 PE=2 SV=1
Length = 963
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 25/224 (11%)
Query: 6 SLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLH 65
++++V +H LY +PN K A +WL Q Q S AW ++W+ LL
Sbjct: 22 TVESVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWH---------FSWQ-----LLQ 67
Query: 66 QNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLAL 125
+++ E YF A + K + ++P++ + SL+ L + R S K ++T+L +
Sbjct: 68 PDKVP-EIQYFGASALPIKTSRYWSDIPTDQYESLKAQLFTQITRFASGS-KIVLTRLCV 125
Query: 126 ALADLALQM--SAWEKPVVYIIE-------KLSHKGSILALLEVLTVLPEEVNVLKLGKN 176
ALA LAL M AW V ++ + +G LALLE+LTVLPEE +L +
Sbjct: 126 ALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQY 185
Query: 177 RREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSW 220
R+ L V L+ ++ KVLKCF+SW
Sbjct: 186 RKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSW 229
>sp|Q9JM04|IPO13_RAT Importin-13 OS=Rattus norvegicus GN=Ipo13 PE=2 SV=1
Length = 963
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 105/224 (46%), Gaps = 25/224 (11%)
Query: 6 SLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLH 65
+++ V +H LY +PN K A +WL Q Q S AW ++W+ LL
Sbjct: 22 TVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWH---------FSWQ-----LLQ 67
Query: 66 QNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLAL 125
+++ E YF A + K+ + ++P++ + SL+ + R S K ++T+L +
Sbjct: 68 PDKVP-EIQYFGASALHIKISRYWSDIPTDQYESLKAHSFTQITRFASGS-KIVLTRLCV 125
Query: 126 ALADLALQM--SAWEKPVVYIIE-------KLSHKGSILALLEVLTVLPEEVNVLKLGKN 176
ALA LAL M AW V ++ + +G LALLE+LTVLPEE +L +
Sbjct: 126 ALASLALSMMPDAWPCAVADMVRLFQAEDSPVDSQGRCLALLELLTVLPEEFQTSRLPQY 185
Query: 177 RREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSW 220
R+ L V L+ ++ KVLKCF+SW
Sbjct: 186 RKGLVRASLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSW 229
>sp|Q54C85|IP13A_DICDI Importin-13 homolog A OS=Dictyostelium discoideum GN=ipo13A PE=3
SV=1
Length = 1064
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 105/236 (44%), Gaps = 34/236 (14%)
Query: 2 ESQPSLDTVYAVVHTLYL--NPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIA 59
ESQ +++ V V+ +LY N + + + QWL Q QKS +W IA
Sbjct: 15 ESQFTVEKVETVLKSLYFPQNNDYSALPQIQQWLIQFQKSFSSWSIA------------- 61
Query: 60 DEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNI 119
+LL N E YF A T+ K++N + L + D+L+ L +
Sbjct: 62 -PLLLMSN--IKEIQYFGASTIENKIKNNWLSLSQDMKKEFLDNLLLFLKTQITKCSTVV 118
Query: 120 ITQLALALADLALQMSA--WEKPVVYIIEKLSHKG---------SILAL-LEVLTVLPEE 167
IT+L LA++ +A + W P++ +++ LS + +++ L LE+LT+ PEE
Sbjct: 119 ITRLCLAVSVIACHSTTDLWANPILDVLQ-LSFQDINNLDCFNPNLVNLTLELLTIFPEE 177
Query: 168 V-NVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSL--QTKVLKCFTSW 220
+ N + + +R + + V E L + + +L LKCF SW
Sbjct: 178 LTNADYITQEKRNKVGLQFNKHNSKVFEILCKIMSLPQNQQTLIFMKSSLKCFKSW 233
>sp|Q5ZIC8|IPO13_CHICK Importin-13 OS=Gallus gallus GN=IPO13 PE=2 SV=1
Length = 958
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 100/224 (44%), Gaps = 25/224 (11%)
Query: 6 SLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLH 65
+++ V +H LY +PN K A +WL Q Q S AW ++W +LL+
Sbjct: 17 TVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWH---------FSW-----LLLN 62
Query: 66 QNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLAL 125
+++ A + LP + + SL+ L H+ R S K ++T+L +
Sbjct: 63 MDKVPEIQYSAPAPCTSRSPATGTTSLPDQ-YESLKSQLFTHITRFAGGS-KIVLTRLCV 120
Query: 126 ALADLALQM--SAWEKPVVYIIE-------KLSHKGSILALLEVLTVLPEEVNVLKLGKN 176
ALA LAL M AW V ++ + + LALLE+LTVLPEE +L +
Sbjct: 121 ALASLALSMMPEAWPCAVADMVRMFQAEDSNVDGRARCLALLELLTVLPEEFQTSRLPQY 180
Query: 177 RREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSW 220
R+ + L V L+ ++ KVLKCF+SW
Sbjct: 181 RKGQVRSVLAQECGSVFPLLEQLLQQQDSPGFIKQKVLKCFSSW 224
>sp|Q54WT9|IP13B_DICDI Importin-13 homolog B OS=Dictyostelium discoideum GN=ipo13B PE=3
SV=1
Length = 1119
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 43/219 (19%)
Query: 1 MESQPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIAD 60
+E + +LD + +HTLY + + +++ A +WL QK AW+
Sbjct: 66 LEPEATLDVLTHALHTLYKSNDSNQRKLAEKWLILFQK-------------QPIAWEFCP 112
Query: 61 EMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNII 120
+LL N L+ YF A T+ K++N + +E +V ++ ++ + S K I
Sbjct: 113 RLLLETNIFELQ--YFGASTLESKLKNEW----NECNVEMKSKILNTIVSIIQNSTKLPI 166
Query: 121 -----TQLALALADLALQMSAWEKPVVYIIEKLSHKGSI------------------LAL 157
+ L +A + W + II LS K I L +
Sbjct: 167 CCVTRVSVTLTIAVMYTFPEIWRNAIFDIIH-LSIKQDINTLSLHDPSQNHFNTDRLLMV 225
Query: 158 LEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFL 196
LE L++LP+E+ L + E ++ELK + +FL
Sbjct: 226 LEFLSILPDELKKQDLALCKYSEIQKELKLIIDKIYKFL 264
>sp|Q9SHI1|IF2C_ARATH Translation initiation factor IF-2, chloroplastic OS=Arabidopsis
thaliana GN=At1g17220 PE=2 SV=2
Length = 1026
Score = 37.4 bits (85), Expect = 0.10, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 91 ELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYIIEKLSH 150
E+ VSLRD R + +G +T +LA A A +MS + + II K+
Sbjct: 766 EMAEARAVSLRDE------RISAKAGDGKVTLSSLASAVSAKKMSGLDLHQLNIILKVDV 819
Query: 151 KGSILALLEVLTVLPEEVNVLKL 173
+GSI A+ + L VLP+E LK
Sbjct: 820 QGSIEAVRQALQVLPQENVTLKF 842
>sp|A4J5Y5|DXR_DESRM 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulfotomaculum
reducens (strain MI-1) GN=dxr PE=3 SV=1
Length = 387
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 145 IEKLSHKGSI-LALLEVLTVLPEEVNVLKLGKNR-REEFEEELKAAGPIVIEF 195
I L GSI LEV+ PEE+NV+ L R RE F E+ KA P+++
Sbjct: 5 ISILGSTGSIGRQTLEVVNSFPEELNVVALAAGRNRELFLEQCKAYKPLLVSL 57
>sp|Q5LVN0|DNAE2_RUEPO Error-prone DNA polymerase OS=Ruegeria pomeroyi (strain ATCC 700808
/ DSM 15171 / DSS-3) GN=dnaE2 PE=3 SV=1
Length = 1101
Score = 31.2 bits (69), Expect = 7.1, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 126 ALADLALQMSAWEKPVVYIIEKLSHKGSILALLEVLTVLPEEVNVLKLGKNRREEFEEEL 185
A A LAL+ SA P+V + + L H+ + L +VLT + E + + ++G E L
Sbjct: 202 ACARLALRSSA---PMVAVGDALMHRANRRQLADVLTCMREHITIDRIGTRALPNAERRL 258
Query: 186 KA 187
K
Sbjct: 259 KG 260
>sp|Q29N77|EFGM_DROPS Elongation factor G, mitochondrial OS=Drosophila pseudoobscura
pseudoobscura GN=ico PE=3 SV=1
Length = 744
Score = 30.8 bits (68), Expect = 9.0, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 12/127 (9%)
Query: 72 EAVYFSAQT-MRQKVQNAFFELPSESHVS---LRDSLIEHLCRTNDTSGKNIITQLALAL 127
+A+YF + M ++ E+P + V R LIEHL ++T G+ + + +
Sbjct: 216 QAIYFEGENGMDVRLD----EIPQDMRVESQERRQELIEHLSNADETFGEFFLEEKPFSE 271
Query: 128 ADL--ALQMSAWEKPV--VYIIEKLSHKGSILALLEVLTVLPEEVNVLKLGKNRREEFEE 183
ADL AL+ + + V + L +KG L V+ LP V LG RE +
Sbjct: 272 ADLRAALRRTCINRTFTPVLVGTALKNKGVQPLLDAVIDYLPNPGEVENLGFIEREGKDP 331
Query: 184 ELKAAGP 190
E P
Sbjct: 332 EKIVLNP 338
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,283,238
Number of Sequences: 539616
Number of extensions: 3152527
Number of successful extensions: 9254
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 9202
Number of HSP's gapped (non-prelim): 26
length of query: 238
length of database: 191,569,459
effective HSP length: 114
effective length of query: 124
effective length of database: 130,053,235
effective search space: 16126601140
effective search space used: 16126601140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)