Query psy13058
Match_columns 238
No_of_seqs 123 out of 717
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 18:22:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13058.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13058hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2081|consensus 100.0 4.5E-32 9.7E-37 245.8 17.8 196 27-238 2-226 (559)
2 KOG2022|consensus 100.0 3.1E-27 6.7E-32 222.4 20.6 201 5-221 4-220 (982)
3 KOG2021|consensus 100.0 7.3E-27 1.6E-31 216.8 21.6 216 7-237 2-259 (980)
4 COG5101 CRM1 Importin beta-rel 99.9 1.1E-20 2.4E-25 173.5 20.6 217 4-237 10-260 (1053)
5 PF08389 Xpo1: Exportin 1-like 99.7 1.3E-17 2.9E-22 130.6 11.6 118 116-233 1-148 (148)
6 KOG2020|consensus 99.7 5.7E-15 1.2E-19 145.3 18.8 216 7-237 9-257 (1041)
7 KOG1410|consensus 99.5 2.9E-12 6.2E-17 119.3 23.7 156 6-178 3-173 (1082)
8 KOG2171|consensus 99.4 4.3E-11 9.3E-16 117.0 20.7 145 7-170 3-151 (1075)
9 KOG1991|consensus 99.2 4.2E-09 9E-14 101.9 22.6 193 7-221 3-210 (1010)
10 PF03810 IBN_N: Importin-beta 99.2 1.3E-10 2.8E-15 81.2 7.3 67 29-109 1-76 (77)
11 KOG1241|consensus 98.8 2.9E-07 6.2E-12 87.4 17.6 188 20-237 12-245 (859)
12 KOG1993|consensus 98.5 3.3E-06 7.2E-11 80.7 13.6 161 20-200 11-181 (978)
13 KOG1992|consensus 98.3 5.1E-05 1.1E-09 73.1 16.8 128 5-151 2-138 (960)
14 COG5656 SXM1 Importin, protein 98.2 0.00014 3.1E-09 69.5 17.7 183 20-221 14-209 (970)
15 KOG2023|consensus 98.1 1.7E-05 3.7E-10 74.8 10.4 205 4-236 6-219 (885)
16 COG5657 CSE1 CAS/CSE protein i 98.0 0.00039 8.5E-09 67.8 16.0 114 20-151 15-135 (947)
17 KOG2274|consensus 97.9 0.0008 1.7E-08 65.7 17.7 132 20-169 15-160 (1005)
18 COG5215 KAP95 Karyopherin (imp 97.8 0.0019 4.2E-08 60.5 17.6 129 20-166 16-163 (858)
19 KOG1824|consensus 93.0 9.2 0.0002 38.8 16.9 93 117-221 188-285 (1233)
20 PF13646 HEAT_2: HEAT repeats; 88.5 3.7 8E-05 28.2 7.5 87 11-128 2-88 (88)
21 PF13646 HEAT_2: HEAT repeats; 87.2 1.8 3.9E-05 29.9 5.2 57 9-81 31-87 (88)
22 PF08167 RIX1: rRNA processing 85.7 16 0.00035 29.0 11.7 74 68-145 36-110 (165)
23 PTZ00429 beta-adaptin; Provisi 78.4 76 0.0017 31.7 21.3 110 17-150 76-190 (746)
24 PF01602 Adaptin_N: Adaptin N 75.8 68 0.0015 29.8 19.7 196 17-237 50-276 (526)
25 smart00802 UME Domain in UVSB 74.0 33 0.00072 25.4 8.1 62 156-221 8-82 (107)
26 KOG1240|consensus 67.2 93 0.002 32.8 11.7 41 95-135 570-610 (1431)
27 PF08064 UME: UME (NUC010) dom 66.0 50 0.0011 24.2 8.2 62 156-221 8-82 (107)
28 PF08167 RIX1: rRNA processing 63.3 69 0.0015 25.3 8.5 28 141-168 27-56 (165)
29 PRK09687 putative lyase; Provi 62.6 1E+02 0.0022 26.7 19.8 102 19-146 33-135 (280)
30 PF09184 PPP4R2: PPP4R2; Inte 56.8 1.4E+02 0.003 26.2 12.0 121 7-145 2-125 (288)
31 cd07064 AlkD_like_1 A new stru 55.5 68 0.0015 26.5 7.5 64 17-100 20-85 (208)
32 PF12348 CLASP_N: CLASP N term 52.1 1.3E+02 0.0028 24.5 11.2 165 67-236 17-204 (228)
33 PF07539 DRIM: Down-regulated 50.9 26 0.00056 27.3 4.0 30 190-221 16-45 (141)
34 KOG1059|consensus 50.9 2.7E+02 0.0059 27.9 12.0 56 92-151 137-193 (877)
35 PF05402 PqqD: Coenzyme PQQ sy 49.4 35 0.00075 22.4 4.0 38 2-39 27-64 (68)
36 PF08158 NUC130_3NT: NUC130/3N 47.6 72 0.0016 20.4 5.0 36 95-130 11-46 (52)
37 PF10508 Proteasom_PSMB: Prote 46.9 2.6E+02 0.0056 26.4 20.2 146 11-166 162-319 (503)
38 KOG2160|consensus 42.5 2.6E+02 0.0056 25.2 16.7 94 21-134 95-198 (342)
39 COG5096 Vesicle coat complex, 42.0 3.8E+02 0.0082 27.0 14.4 124 20-167 66-196 (757)
40 PF09324 DUF1981: Domain of un 40.4 1.3E+02 0.0028 21.1 6.3 34 183-218 51-84 (86)
41 cd03568 VHS_STAM VHS domain fa 39.9 1.8E+02 0.0038 22.6 8.0 70 140-221 38-109 (144)
42 smart00288 VHS Domain present 39.8 1.7E+02 0.0036 22.3 8.3 71 140-221 38-110 (133)
43 KOG2171|consensus 39.4 4.7E+02 0.01 27.4 17.9 77 40-134 113-190 (1075)
44 PF01602 Adaptin_N: Adaptin N 37.0 3.4E+02 0.0074 25.1 14.2 125 10-149 232-387 (526)
45 cd00870 PI3Ka_III Phosphoinosi 35.3 1.8E+02 0.0038 23.3 6.6 46 21-82 58-103 (166)
46 PF12758 DUF3813: Protein of u 34.7 93 0.002 20.8 4.0 31 7-37 30-60 (63)
47 PF06840 DUF1241: Protein of u 33.9 96 0.0021 24.6 4.7 42 154-202 98-142 (154)
48 PF04826 Arm_2: Armadillo-like 32.0 3.3E+02 0.0071 23.3 15.6 96 68-170 106-209 (254)
49 PF08064 UME: UME (NUC010) dom 31.6 1.9E+02 0.0041 21.1 5.9 30 209-238 53-83 (107)
50 PF01603 B56: Protein phosphat 31.4 4.1E+02 0.009 24.3 15.9 26 10-36 135-160 (409)
51 PF02985 HEAT: HEAT repeat; I 31.1 95 0.0021 16.9 3.5 19 68-86 11-29 (31)
52 COG5502 Uncharacterized conser 31.1 2.5E+02 0.0054 21.7 9.9 76 27-113 7-91 (135)
53 cd00872 PI3Ka_I Phosphoinositi 30.7 2.1E+02 0.0046 22.9 6.4 62 21-109 51-112 (171)
54 cd00020 ARM Armadillo/beta-cat 30.5 1.9E+02 0.0041 20.2 9.8 90 20-130 18-118 (120)
55 PF10363 DUF2435: Protein of u 30.4 2E+02 0.0044 20.4 8.2 72 69-148 15-86 (92)
56 cd03569 VHS_Hrs_Vps27p VHS dom 30.1 2.6E+02 0.0056 21.6 8.2 70 140-221 42-113 (142)
57 PF14576 SEO_N: Sieve element 29.9 2E+02 0.0044 25.2 6.5 66 93-170 90-156 (286)
58 smart00145 PI3Ka Phosphoinosit 29.8 2.7E+02 0.0058 22.6 6.9 46 21-82 56-101 (184)
59 COG1869 RbsD ABC-type ribose t 29.6 2.1E+02 0.0045 22.1 5.7 45 152-202 46-90 (135)
60 PF03511 Fanconi_A: Fanconi an 29.0 76 0.0017 21.1 2.9 31 191-221 12-51 (64)
61 COG4152 ABC-type uncharacteriz 29.0 2.5E+02 0.0055 24.5 6.8 142 7-165 89-241 (300)
62 PHA02513 V1 structural protein 27.5 96 0.0021 23.2 3.5 37 5-41 22-58 (135)
63 PF09058 L27_1: L27_1; InterP 27.0 96 0.0021 20.8 3.1 33 6-38 11-43 (64)
64 PF13513 HEAT_EZ: HEAT-like re 25.7 1.7E+02 0.0036 17.9 4.7 33 184-218 21-53 (55)
65 KOG4646|consensus 25.1 1.8E+02 0.0039 22.9 4.8 43 7-49 15-57 (173)
66 KOG1060|consensus 24.7 7.6E+02 0.017 25.2 10.4 86 68-168 298-388 (968)
67 PF05536 Neurochondrin: Neuroc 23.9 6.5E+02 0.014 24.1 20.9 60 173-232 339-401 (543)
68 cd07316 terB_like_DjlA N-termi 23.8 2.6E+02 0.0057 19.6 9.0 86 20-126 15-104 (106)
69 PF14846 DUF4485: Domain of un 23.8 2.3E+02 0.005 19.8 4.9 55 21-95 21-75 (85)
70 PF04499 SAPS: SIT4 phosphatas 22.6 1.6E+02 0.0036 27.7 5.0 50 189-238 32-92 (475)
71 cd00864 PI3Ka Phosphoinositide 22.0 3.9E+02 0.0084 20.8 8.1 46 21-82 51-96 (152)
72 PF10188 Oscp1: Organic solute 20.3 83 0.0018 25.5 2.2 41 71-112 113-153 (173)
73 PRK13800 putative oxidoreducta 20.2 4.2E+02 0.009 27.1 7.7 24 16-39 782-805 (897)
No 1
>KOG2081|consensus
Probab=100.00 E-value=4.5e-32 Score=245.84 Aligned_cols=196 Identities=44% Similarity=0.694 Sum_probs=183.0
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHH
Q psy13058 27 EKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIE 106 (238)
Q Consensus 27 ~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~~l~~~~~~~lr~~Ll~ 106 (238)
..|+.||.+||+|+++|.+|.++|.. ..+.+..+|||||++.||+++|+++|+.....+|+++++
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~---------------~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~t 66 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQ---------------KCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLIT 66 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcc---------------cchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHH
Confidence 46999999999999999999999998 589999999999999999999999999999999999999
Q ss_pred HHHHhccCCchhHHHHHHHHHHHHHhccCCCchHHHHHHHHhCcc-cchHHHHHHHhhhHhhhhcccC--ChhhHHHHHH
Q psy13058 107 HLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYIIEKLSHK-GSILALLEVLTVLPEEVNVLKL--GKNRREEFEE 183 (238)
Q Consensus 107 ~l~~~~~~~~~~v~~kL~~~la~l~~~~~~W~~~i~~l~~~~~~~-~~~~~~L~iL~~l~eEv~~~~l--~~~rr~~l~~ 183 (238)
++.....+++ .++++|+.++|++++++++|.+++.+++..+++. ..++++|++|+++|||+.++++ ...||.++++
T Consensus 67 hl~~l~~~~~-~i~tQL~vavA~Lal~~~~W~n~I~e~v~~~~~~~~~~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~ 145 (559)
T KOG2081|consen 67 HLKELHDHPD-VIRTQLAVAVAALALHMPEWVNPIFELVRALSNKHPAVPILLEILKVLPEETRDIRLTVGANRRHEFID 145 (559)
T ss_pred HHHHHHhCCc-hHHHHHHHHHHHHHHHhHhhcchHHHHHHHhhcCCccHHHHHHHHHhCcHhhcchhhhhhhhhHHHHHH
Confidence 9998887776 9999999999999999999999999999998775 4589999999999999999554 5789999999
Q ss_pred HHHHhhhHHHHHHHHHHhccCCC-HHHHHHHHHHhhhcc-------------------------CchhHHHHHHHHHhhc
Q psy13058 184 ELKAAGPIVIEFLKTCQANCGDN-VSLQTKVLKCFTSWS-------------------------SGSLHDAATDCVSALH 237 (238)
Q Consensus 184 ~l~~~~~~vl~~L~~~l~~~~~~-~~~~~~~l~c~~sWi-------------------------~~~l~~~a~~~l~e~~ 237 (238)
++..+.+.++.++..+++..+.+ ....+++|+|++||. .++++++|++|+|+++
T Consensus 146 ~l~~~~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ll 225 (559)
T KOG2081|consen 146 ELAAQVSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDDELHEEATECICALL 225 (559)
T ss_pred HHHHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHHHH
Confidence 99999999999999999998766 778999999999998 7999999999999986
Q ss_pred C
Q psy13058 238 R 238 (238)
Q Consensus 238 ~ 238 (238)
+
T Consensus 226 ~ 226 (559)
T KOG2081|consen 226 Y 226 (559)
T ss_pred H
Confidence 3
No 2
>KOG2022|consensus
Probab=99.95 E-value=3.1e-27 Score=222.36 Aligned_cols=201 Identities=26% Similarity=0.408 Sum_probs=184.4
Q ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHH
Q psy13058 5 PSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQK 84 (238)
Q Consensus 5 ~~l~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~k 84 (238)
-+++.|++++..||.+++++.++.+++||++.|+|++||..++.||+. ++..++|||||.||+.|
T Consensus 4 ~~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~---------------~k~~evqyFGAltL~~k 68 (982)
T KOG2022|consen 4 DLIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQP---------------DKSSEVQYFGALTLHDK 68 (982)
T ss_pred hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCC---------------CchhHHHHHhHHHHHHH
Confidence 379999999999999999999999999999999999999999999998 78899999999999999
Q ss_pred hhcccCCCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccC--CCchHHHHHHHHhCcc--------cch
Q psy13058 85 VQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMS--AWEKPVVYIIEKLSHK--------GSI 154 (238)
Q Consensus 85 i~~~~~~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~--~W~~~i~~l~~~~~~~--------~~~ 154 (238)
|+++|+.+++++..+|+..++..+..+++| |+.|.||+|.++|.+++.+- .||+++.+++..++.+ ..+
T Consensus 69 i~~~~e~~~~~~~~qL~~klf~~l~~~~g~-~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~ 147 (982)
T KOG2022|consen 69 INTRWEECPANEAVQLKLKLFLILSRFAGG-PKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINC 147 (982)
T ss_pred HHhhhccCChhHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhH
Confidence 999999999999999999999999888866 58999999999999999875 4999999999999763 357
Q ss_pred HHHHHHHhhhHhhhhcccCChhhHHHHHHHHHHhhhHHHHHHHHHHhccC--CCH----HHHHHHHHHhhhcc
Q psy13058 155 LALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCG--DNV----SLQTKVLKCFTSWS 221 (238)
Q Consensus 155 ~~~L~iL~~l~eEv~~~~l~~~rr~~l~~~l~~~~~~vl~~L~~~l~~~~--~~~----~~~~~~l~c~~sWi 221 (238)
.++|+.|+.+|+|.....++-.||..++.++......+..++..++..+. ... .....+++|+++|+
T Consensus 148 ~~~Le~Ls~~p~e~q~~~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi 220 (982)
T KOG2022|consen 148 EILLEVLSFMPAEFQHVTLPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWI 220 (982)
T ss_pred HHHHHHhccCcHhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999998889999999999999999999999999998764 112 46788999999999
No 3
>KOG2021|consensus
Probab=99.95 E-value=7.3e-27 Score=216.79 Aligned_cols=216 Identities=18% Similarity=0.242 Sum_probs=182.2
Q ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHh
Q psy13058 7 LDTVYAVVHTLYLN-PNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKV 85 (238)
Q Consensus 7 l~~v~~ai~~ly~~-~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki 85 (238)
.+++|+|+.+++.| .|++.|+||-+|+++++.||.||++|.+++.. ..+++.++|||.|||.+++
T Consensus 2 mddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~--------------~ts~d~vkf~clqtL~e~v 67 (980)
T KOG2021|consen 2 MDDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLIN--------------ETSNDLVKFYCLQTLIELV 67 (980)
T ss_pred chHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHh--------------hcccchhhhhhHHHHHHHH
Confidence 46899999999988 79999999999999999999999999999998 2488999999999999999
Q ss_pred hcccCCCChhhHHHHHHHHHHHHHHhc--c----CCchhHHHHHHHHHHHHHhccC-C-CchHHHHHHHHhCcc---cch
Q psy13058 86 QNAFFELPSESHVSLRDSLIEHLCRTN--D----TSGKNIITQLALALADLALQMS-A-WEKPVVYIIEKLSHK---GSI 154 (238)
Q Consensus 86 ~~~~~~l~~~~~~~lr~~Ll~~l~~~~--~----~~~~~v~~kL~~~la~l~~~~~-~-W~~~i~~l~~~~~~~---~~~ 154 (238)
+..+++.+..+.+.+|.++..|++... + +| .||+||+++.|+.+++..| . |++++.|++..++.+ .+.
T Consensus 68 rekyne~nl~elqlvR~sv~swlk~qvl~ne~~~~p-~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~~~~~ 146 (980)
T KOG2021|consen 68 REKYNEANLNELQLVRFSVTSWLKFQVLGNEQTKLP-DFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSAISGL 146 (980)
T ss_pred HHhhccCCHHHHHHHHHHHHHHHHHHHhCcccCCCC-hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhH
Confidence 999999999999999999999996432 1 33 5999999999999999766 3 999999999998755 458
Q ss_pred HHHHHHHhhhHhhhhcc---cCCh--hhHHHHHHHHHH-hhhHHHHHHHHHHhccC-C-CHHHHHHHHHHhhhc---c--
Q psy13058 155 LALLEVLTVLPEEVNVL---KLGK--NRREEFEEELKA-AGPIVIEFLKTCQANCG-D-NVSLQTKVLKCFTSW---S-- 221 (238)
Q Consensus 155 ~~~L~iL~~l~eEv~~~---~l~~--~rr~~l~~~l~~-~~~~vl~~L~~~l~~~~-~-~~~~~~~~l~c~~sW---i-- 221 (238)
.+++.+|..|..|+.+. +.++ .+.+.+||.||+ +.|.+....-+++.... . +..+...+|+|+++| |
T Consensus 147 dfflkvllaIdsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdI 226 (980)
T KOG2021|consen 147 DFFLKVLLAIDSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDI 226 (980)
T ss_pred HHHHHHHHHhhhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhh
Confidence 99999999999999883 3343 345789999997 56776666666665421 2 456777888888755 4
Q ss_pred -----------------CchhHHHHHHHHHhhc
Q psy13058 222 -----------------SGSLHDAATDCVSALH 237 (238)
Q Consensus 222 -----------------~~~l~~~a~~~l~e~~ 237 (238)
.+++|++||+|+.++|
T Consensus 227 nLIaNd~f~nLLy~fl~ieelR~aac~cilaiV 259 (980)
T KOG2021|consen 227 NLIANDYFLNLLYKFLNIEELRIAACNCILAIV 259 (980)
T ss_pred hhhhchhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 6999999999999987
No 4
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.87 E-value=1.1e-20 Score=173.47 Aligned_cols=217 Identities=18% Similarity=0.280 Sum_probs=185.5
Q ss_pred CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHH
Q psy13058 4 QPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQ 83 (238)
Q Consensus 4 ~~~l~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ 83 (238)
..+++-+.+.+..+|.| +...++||++.|.+||..|+||+.+.++|+. +..++.+|.|.++|..
T Consensus 10 dLdiallDkVVttfyqg-~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~---------------S~~pqskyiALs~Ldk 73 (1053)
T COG5101 10 DLDIALLDKVVTTFYQG-DGRKQEQAQRILTKFQELPDAWTKADYILNN---------------SKLPQSKYIALSLLDK 73 (1053)
T ss_pred ccCHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHhCchHHHHHHHHHhc---------------ccCcchhhhHHHHHHH
Confidence 35788889999999986 5668889999999999999999999999998 7899999999999999
Q ss_pred HhhcccCCCChhhHHHHHHHHHHHHHHhccC-----CchhHHHHHHHHHHHHHhc-cC-CCchHHHHHHHHhCcc-cchH
Q psy13058 84 KVQNAFFELPSESHVSLRDSLIEHLCRTNDT-----SGKNIITQLALALADLALQ-MS-AWEKPVVYIIEKLSHK-GSIL 155 (238)
Q Consensus 84 ki~~~~~~l~~~~~~~lr~~Ll~~l~~~~~~-----~~~~v~~kL~~~la~l~~~-~~-~W~~~i~~l~~~~~~~-~~~~ 155 (238)
-|++.|.-+|++.+..+|+++.+.+.+-+.. ..+++.||+-.+|+-++.+ +| .||+||.+++..-+.+ ..+.
T Consensus 74 lIttkWkllp~~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~s~~vCe 153 (1053)
T COG5101 74 LITTKWKLLPEGMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQISMEVCE 153 (1053)
T ss_pred HHHhhhhhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhccchHHHHh
Confidence 9999999999999999999999988654421 2379999999999999985 56 6999999999876655 4567
Q ss_pred HHHHHHhhhHhhhhccc---CChhhHHHHHHHHHHhhhHHHHHHHHHHhccCCCHHHHHH---HHHHhhhcc--------
Q psy13058 156 ALLEVLTVLPEEVNVLK---LGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTK---VLKCFTSWS-------- 221 (238)
Q Consensus 156 ~~L~iL~~l~eEv~~~~---l~~~rr~~l~~~l~~~~~~vl~~L~~~l~~~~~~~~~~~~---~l~c~~sWi-------- 221 (238)
.-+.+|+.|.||+.+.. ++..|..-+++.|...+|.++.++.++|+... ++++.++ .|-||-.||
T Consensus 154 NnmivLklLsEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~-~~SLi~ATLesllrfl~wiPl~yIfeT 232 (1053)
T COG5101 154 NNMIVLKLLSEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSR-DESLIEATLESLLRFLEWIPLDYIFET 232 (1053)
T ss_pred ccHHHHHHhHHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHhhCchhHHHHH
Confidence 77889999999998832 35566777899999999999999999998764 4555554 556777898
Q ss_pred ------------CchhHHHHHHHHHhhc
Q psy13058 222 ------------SGSLHDAATDCVSALH 237 (238)
Q Consensus 222 ------------~~~l~~~a~~~l~e~~ 237 (238)
.+.+|.++..|+.||+
T Consensus 233 nIieLv~~~f~s~pd~r~~tl~CLtEi~ 260 (1053)
T COG5101 233 NIIELVLEHFNSMPDTRVATLSCLTEIV 260 (1053)
T ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 6889999999999985
No 5
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=99.75 E-value=1.3e-17 Score=130.56 Aligned_cols=118 Identities=28% Similarity=0.512 Sum_probs=104.6
Q ss_pred chhHHHHHHHHHHHHHhcc-C-CCchHHHHHHHHhCcc-cchHHHHHHHhhhHhhhhc---ccCChhhHHHHHHHHHHhh
Q psy13058 116 GKNIITQLALALADLALQM-S-AWEKPVVYIIEKLSHK-GSILALLEVLTVLPEEVNV---LKLGKNRREEFEEELKAAG 189 (238)
Q Consensus 116 ~~~v~~kL~~~la~l~~~~-~-~W~~~i~~l~~~~~~~-~~~~~~L~iL~~l~eEv~~---~~l~~~rr~~l~~~l~~~~ 189 (238)
|++|++|+|.+++.++.+. | .||++++++++.++++ .+..++|++|+.++||+.+ ..+...||..+++.|+++.
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~ 80 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNS 80 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHH
Confidence 4699999999999999987 4 6999999999999876 6678999999999999986 3456788999999999999
Q ss_pred hHHHHHHHHHHhccCCC--HHHHHHHHHHhhhcc----------------------CchhHHHHHHHH
Q psy13058 190 PIVIEFLKTCQANCGDN--VSLQTKVLKCFTSWS----------------------SGSLHDAATDCV 233 (238)
Q Consensus 190 ~~vl~~L~~~l~~~~~~--~~~~~~~l~c~~sWi----------------------~~~l~~~a~~~l 233 (238)
+.|++++.++++...+. .++...+|+|+.+|+ .++++++|+|||
T Consensus 81 ~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 81 PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 99999999999886422 789999999999998 799999999997
No 6
>KOG2020|consensus
Probab=99.66 E-value=5.7e-15 Score=145.28 Aligned_cols=216 Identities=16% Similarity=0.249 Sum_probs=173.1
Q ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHh
Q psy13058 7 LDTVYAVVHTLYLN-PNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKV 85 (238)
Q Consensus 7 l~~v~~ai~~ly~~-~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki 85 (238)
-.++..|+..-+.+ ++.++|.+|+++|.+||..+++|..|..+|.. +..++++|||.|.|.+-|
T Consensus 9 ~~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~---------------s~~~~~k~f~Lqlle~vi 73 (1041)
T KOG2020|consen 9 DSELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKL---------------STNPILKYFALQLLENVI 73 (1041)
T ss_pred HHHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhc---------------cCCchhheeeHHHHHHHH
Confidence 34555666655555 88999999999999999999999999999998 689999999999999999
Q ss_pred hcccCCCChhhHHHHHHHHHHHHHHhccCC-----chhHHHHHHHHHHHHHhcc-C-CCchHHHHHHHHhCcc-cchHHH
Q psy13058 86 QNAFFELPSESHVSLRDSLIEHLCRTNDTS-----GKNIITQLALALADLALQM-S-AWEKPVVYIIEKLSHK-GSILAL 157 (238)
Q Consensus 86 ~~~~~~l~~~~~~~lr~~Ll~~l~~~~~~~-----~~~v~~kL~~~la~l~~~~-~-~W~~~i~~l~~~~~~~-~~~~~~ 157 (238)
+..|+.+|.+++..+|+++++......... .+++++||+..++-++.+- | .||+++.|+......+ ......
T Consensus 74 k~~W~~~~~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~s~~~~el~ 153 (1041)
T KOG2020|consen 74 KFRWNSLPVEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKTSETVCELS 153 (1041)
T ss_pred HHhcccCCccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhcCcccchHH
Confidence 999999999999999999999986554321 3789999999999999974 5 5999999999988765 678899
Q ss_pred HHHHhhhHhhhhcccCCh--hhH-HHHHHHHHHhhhHHHHHHHHHHhccCCC-HHHHHHHHHHhhhcc------------
Q psy13058 158 LEVLTVLPEEVNVLKLGK--NRR-EEFEEELKAAGPIVIEFLKTCQANCGDN-VSLQTKVLKCFTSWS------------ 221 (238)
Q Consensus 158 L~iL~~l~eEv~~~~l~~--~rr-~~l~~~l~~~~~~vl~~L~~~l~~~~~~-~~~~~~~l~c~~sWi------------ 221 (238)
+.+|..|.||+.+....+ .+| .-++..+...+..+..++..+....+.. ...-...|.+|.+||
T Consensus 154 m~Il~lLsEdvf~~ss~~~~q~~~~il~~~~~~~f~~i~~l~~~~~~~a~~~~~~atl~tl~~fl~wip~~~I~~tn~l~ 233 (1041)
T KOG2020|consen 154 MIILLLLSEEVFDFSSSELTQQKIIILKNLLENEFQQIFTLCSYIKEKANSELLSATLETLLRFLEWIPLGYIFETNILE 233 (1041)
T ss_pred HHHHHHHHHHHhcccchHHHhhhHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcccHHHHHHhhhHH
Confidence 999999999998844332 233 3345555556667777777766654321 233455777888999
Q ss_pred --------CchhHHHHHHHHHhhc
Q psy13058 222 --------SGSLHDAATDCVSALH 237 (238)
Q Consensus 222 --------~~~l~~~a~~~l~e~~ 237 (238)
.++.+..|..|+.+++
T Consensus 234 ~~l~~~ln~~~~r~~al~CL~ei~ 257 (1041)
T KOG2020|consen 234 LLLNKFLNAPELRNNALSCLTELL 257 (1041)
T ss_pred HHHHhccchHHHHHHHHHHHHHHH
Confidence 4899999999999874
No 7
>KOG1410|consensus
Probab=99.54 E-value=2.9e-12 Score=119.31 Aligned_cols=156 Identities=19% Similarity=0.231 Sum_probs=133.4
Q ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHh
Q psy13058 6 SLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKV 85 (238)
Q Consensus 6 ~l~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki 85 (238)
++.+++..+..||.+.|+.+|++|+.-|.+|-.+|+.-+.|..||.+ +..++.++.|+.+|.+.+
T Consensus 3 sLaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~---------------gs~pYs~mlAst~L~Klv 67 (1082)
T KOG1410|consen 3 SLAQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLER---------------GSYPYSQMLASTCLMKLV 67 (1082)
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHc---------------CCCchHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999998 788999999999998777
Q ss_pred hcccCCCChhhHHHHHHHHHHHHHHhcc-CCchhHHHHHHHHHHHHHhcc--C------CCchHHHHHHHHhCcc--cch
Q psy13058 86 QNAFFELPSESHVSLRDSLIEHLCRTND-TSGKNIITQLALALADLALQM--S------AWEKPVVYIIEKLSHK--GSI 154 (238)
Q Consensus 86 ~~~~~~l~~~~~~~lr~~Ll~~l~~~~~-~~~~~v~~kL~~~la~l~~~~--~------~W~~~i~~l~~~~~~~--~~~ 154 (238)
.+. ..+|.+++.+||+++++++..-.+ -+ +||...||+.+|.+...- . .+.++|.++.+.++.+ ++.
T Consensus 68 s~~-t~lpl~qrldir~Yilnylat~~Pk~~-~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~ 145 (1082)
T KOG1410|consen 68 SRK-TPLPLEQRLDIRNYILNYLATGAPKLA-PFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHC 145 (1082)
T ss_pred cCC-CCCcHHHHHHHHHHHHHHHhcCCCCcc-cHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHH
Confidence 654 489999999999999999976322 22 499999999999998641 1 2567889999988765 789
Q ss_pred HHHHHHHhhhHhhhhcc----cCChhhH
Q psy13058 155 LALLEVLTVLPEEVNVL----KLGKNRR 178 (238)
Q Consensus 155 ~~~L~iL~~l~eEv~~~----~l~~~rr 178 (238)
.+++.||..|..|+... +++++||
T Consensus 146 ~igv~iLsqLvqemN~~~~~~p~tkHRk 173 (1082)
T KOG1410|consen 146 IIGVQILSQLVQEMNQADGMDPSTKHRK 173 (1082)
T ss_pred HHHHHHHHHHHHHhhCCCCCCcchHHHH
Confidence 99999999999999873 2345555
No 8
>KOG2171|consensus
Probab=99.39 E-value=4.3e-11 Score=117.00 Aligned_cols=145 Identities=17% Similarity=0.248 Sum_probs=120.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhh
Q psy13058 7 LDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQ 86 (238)
Q Consensus 7 l~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~ 86 (238)
...+++.+..|.+ +|++.|++|++-|+..-+++..-.....++.. +.++++|-+||-.+|..+.
T Consensus 3 ~~~l~qLl~~l~s-pDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~---------------~~~p~~Rq~aaVl~Rkl~~ 66 (1075)
T KOG2171|consen 3 SAPLEQLLQQLLS-PDNEVRRQAEEALETLAKTEPLLPALAHILAT---------------SADPQVRQLAAVLLRKLLT 66 (1075)
T ss_pred hhHHHHHHHHhcC-CCchHHHHHHHHHHHhhcccchHHHHHHHHhc---------------CCChHHHHHHHHHHHHHHH
Confidence 3566777777764 57788999999999666666655555555555 7899999999999999999
Q ss_pred cccCCCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccC-C-CchHHHHHHHHhCcc--cchHHHHHHHh
Q psy13058 87 NAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMS-A-WEKPVVYIIEKLSHK--GSILALLEVLT 162 (238)
Q Consensus 87 ~~~~~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~-~-W~~~i~~l~~~~~~~--~~~~~~L~iL~ 162 (238)
+.|..|+.+.+..||..||..+.+-. ...||+|+|.++|.++-.-. + ||+.+..+++...+. ......+.+|.
T Consensus 67 ~~w~~l~~e~~~siks~lL~~~~~E~---~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~ 143 (1075)
T KOG2171|consen 67 KHWSRLSAEVQQSIKSSLLEIIQSET---EPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILS 143 (1075)
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 99999999999999999999997632 35899999999999998654 4 999999999988765 56789999999
Q ss_pred hhHhhhhc
Q psy13058 163 VLPEEVNV 170 (238)
Q Consensus 163 ~l~eEv~~ 170 (238)
.+|+-++.
T Consensus 144 s~~~~~~~ 151 (1075)
T KOG2171|consen 144 SLPETFGN 151 (1075)
T ss_pred hhhhhhcc
Confidence 99997766
No 9
>KOG1991|consensus
Probab=99.21 E-value=4.2e-09 Score=101.94 Aligned_cols=193 Identities=18% Similarity=0.271 Sum_probs=152.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhh
Q psy13058 7 LDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQ 86 (238)
Q Consensus 7 l~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~ 86 (238)
++.+.+++.+-- .+||..|+.|++-|.++++.|.--..++.+..+ .+.+..||.-||.-+++||.
T Consensus 3 ~~~l~~~~~~T~-d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~--------------d~~~l~vrqaaaIYlKN~I~ 67 (1010)
T KOG1991|consen 3 LQSLLQIFRATI-DSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMD--------------DGVPLPVRQAAAIYLKNKIT 67 (1010)
T ss_pred hHHHHHHHHHhc-CCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHc--------------cCCchhHHHHHHHHHHHHHH
Confidence 344555555333 356899999999999999999999999999887 36788899999999999999
Q ss_pred cccCC---------CChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhc-cC-CCchHHHHHHHHhCcc--cc
Q psy13058 87 NAFFE---------LPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQ-MS-AWEKPVVYIIEKLSHK--GS 153 (238)
Q Consensus 87 ~~~~~---------l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~-~~-~W~~~i~~l~~~~~~~--~~ 153 (238)
+.|.. ++++++.-+|+.++..+.+ +| ..+|.++..++-.++.. +| .||+.++.+-..++++ .+
T Consensus 68 ~~W~~~~~~g~~~~I~e~dk~~irenIl~~iv~---~p-~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~ 143 (1010)
T KOG1991|consen 68 KSWSSHEAPGRPFGIPEEDKAVIRENILETIVQ---VP-ELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANH 143 (1010)
T ss_pred hcCCccCCCCCcCCCChHHHHHHHHHHHHHHHh---Cc-hHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhh
Confidence 99974 5788999999999999976 44 59999999999888875 45 4999999999999886 34
Q ss_pred hHHHHHHHhhhHhhhhcccC-ChhhHHHHHHHHHHhhhHHHHHHHHHHhccC-CCHHHHHHHHHHhhhcc
Q psy13058 154 ILALLEVLTVLPEEVNVLKL-GKNRREEFEEELKAAGPIVIEFLKTCQANCG-DNVSLQTKVLKCFTSWS 221 (238)
Q Consensus 154 ~~~~L~iL~~l~eEv~~~~l-~~~rr~~l~~~l~~~~~~vl~~L~~~l~~~~-~~~~~~~~~l~c~~sWi 221 (238)
...+|..|..|..- .+. ...+|.-+...+..-+|.++++...++...+ ...++.+.++|.|.+-+
T Consensus 144 vy~aLl~l~qL~k~---ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~ 210 (1010)
T KOG1991|consen 144 VYGALLCLYQLFKT---YEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLI 210 (1010)
T ss_pred HHHHHHHHHHHHHH---HhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHH
Confidence 55666666555442 121 2346777888999999999999999998753 23578888999887766
No 10
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=99.16 E-value=1.3e-10 Score=81.23 Aligned_cols=67 Identities=24% Similarity=0.353 Sum_probs=63.0
Q ss_pred HHHHHHHHhcC-hhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccC--------CCChhhHHH
Q psy13058 29 ASQWLHQLQKS-IYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFF--------ELPSESHVS 99 (238)
Q Consensus 29 A~~~L~~fq~s-~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~--------~l~~~~~~~ 99 (238)
|+++|.+|+++ |+.|..+..++.+ .+.+.++|+||+.+|+++|+++|. .+|++++..
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~--------------~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~ 66 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSS--------------NSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQ 66 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHC--------------TTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHc--------------cCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHH
Confidence 78999999999 8999999999976 367999999999999999999999 999999999
Q ss_pred HHHHHHHHHH
Q psy13058 100 LRDSLIEHLC 109 (238)
Q Consensus 100 lr~~Ll~~l~ 109 (238)
||+.|++.+.
T Consensus 67 Ik~~ll~~l~ 76 (77)
T PF03810_consen 67 IKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999999874
No 11
>KOG1241|consensus
Probab=98.82 E-value=2.9e-07 Score=87.42 Aligned_cols=188 Identities=14% Similarity=0.247 Sum_probs=135.3
Q ss_pred CCCHHHHHHHHHHHHHHhcChh--hHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhh-----------
Q psy13058 20 NPNKTEKEKASQWLHQLQKSIY--AWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQ----------- 86 (238)
Q Consensus 20 ~~d~~~~~qA~~~L~~fq~s~~--aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~----------- 86 (238)
++|+..+.+|+++|.+++.++= --....+.|.+ ..++.++|.-|..+|++-+.
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n--------------~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~ 77 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLAN--------------DNSSDVARMAAGLQLKNSLTAKDPERKQQYQ 77 (859)
T ss_pred CCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------------cCCcHHHHHHHhHHHhhhhccCCHHHHHHHH
Confidence 5789999999999999998652 22222233333 36889999999999988765
Q ss_pred cccCCCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHh-ccC--CCchHHHHHHHHhCccc---chHHHHHH
Q psy13058 87 NAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLAL-QMS--AWEKPVVYIIEKLSHKG---SILALLEV 160 (238)
Q Consensus 87 ~~~~~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~-~~~--~W~~~i~~l~~~~~~~~---~~~~~L~i 160 (238)
.+|.+++.|.++++|+.++..|.. +.....+--++++|.++. ..| .||.+|..+++...... .....|+-
T Consensus 78 qRWl~l~~e~reqVK~~il~tL~~----~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slea 153 (859)
T KOG1241|consen 78 QRWLQLPAEIREQVKNNILRTLGS----PEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEA 153 (859)
T ss_pred HHHHcCCHHHHHHHHHHHHHHcCC----CCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHH
Confidence 569999999999999999988843 223566778888888886 455 49999999999987652 34788999
Q ss_pred HhhhHhhhhcccCChhhHHHHHHHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHhhhcc-------------------
Q psy13058 161 LTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWS------------------- 221 (238)
Q Consensus 161 L~~l~eEv~~~~l~~~rr~~l~~~l~~~~~~vl~~L~~~l~~~~~~~~~~~~~l~c~~sWi------------------- 221 (238)
+..+.|++..- .+.+.++.++.-+-+.+...+++..+...+++|+..=+
T Consensus 154 lGyice~i~pe------------vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqv 221 (859)
T KOG1241|consen 154 LGYICEDIDPE------------VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQV 221 (859)
T ss_pred HHHHHccCCHH------------HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeee
Confidence 99999987551 34445555555555555444444556666666665333
Q ss_pred --------CchhHHHHHHHHHhhc
Q psy13058 222 --------SGSLHDAATDCVSALH 237 (238)
Q Consensus 222 --------~~~l~~~a~~~l~e~~ 237 (238)
..++.-+|..|++.|.
T Consensus 222 vcEatq~~d~~i~~aa~~ClvkIm 245 (859)
T KOG1241|consen 222 VCEATQSPDEEIQVAAFQCLVKIM 245 (859)
T ss_pred eeecccCCcHHHHHHHHHHHHHHH
Confidence 5677778888887763
No 12
>KOG1993|consensus
Probab=98.46 E-value=3.3e-06 Score=80.75 Aligned_cols=161 Identities=14% Similarity=0.188 Sum_probs=119.9
Q ss_pred CCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccC-----CCCh
Q psy13058 20 NPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFF-----ELPS 94 (238)
Q Consensus 20 ~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~-----~l~~ 94 (238)
++|+..++-|++-|.+..+.|.-......+..+ .+.+..+|..|+.-+++-|.+.|. .+|+
T Consensus 11 s~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~--------------~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~ 76 (978)
T KOG1993|consen 11 SQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLS--------------KTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPP 76 (978)
T ss_pred CCCcccchhHHHHHHhhccCCcHHHHHHHHHhc--------------cccceeeeeehhhhHhcchhHHhhcCCcccCCH
Confidence 568888999999999999999988888888766 367799999999999999999996 6999
Q ss_pred hhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHh-ccC-CCchHHHHHHHHhCcc---cchHHHHHHHhhhHhhhh
Q psy13058 95 ESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLAL-QMS-AWEKPVVYIIEKLSHK---GSILALLEVLTVLPEEVN 169 (238)
Q Consensus 95 ~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~-~~~-~W~~~i~~l~~~~~~~---~~~~~~L~iL~~l~eEv~ 169 (238)
|++..||..++.++.+ .. .-+..+.++.++.++- -+| +||+.+.+++.++++. .......++|..+.-=+.
T Consensus 77 EEK~~iR~~Ll~~~~E---~~-nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK 152 (978)
T KOG1993|consen 77 EEKDFIRCNLLLHSDE---EN-NQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILK 152 (978)
T ss_pred HHHHHHHHHHHHhccc---ch-hHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 9999999999888754 22 3788899999999986 456 7999999999998764 233444444444443221
Q ss_pred cccCChhhHHHHHHHHHHhhhHHHHHHHHHH
Q psy13058 170 VLKLGKNRREEFEEELKAAGPIVIEFLKTCQ 200 (238)
Q Consensus 170 ~~~l~~~rr~~l~~~l~~~~~~vl~~L~~~l 200 (238)
. ++..|-.+-+..+.+-+|.+++++.-++
T Consensus 153 ~--Lat~RL~a~rk~F~el~~~I~~~l~~~l 181 (978)
T KOG1993|consen 153 A--LATKRLLADRKAFYELAPEILTILAPIL 181 (978)
T ss_pred H--HHHhHHhhhhHHHHHHhHHHHHHHHHHH
Confidence 1 1112224445566667777777665444
No 13
>KOG1992|consensus
Probab=98.28 E-value=5.1e-05 Score=73.08 Aligned_cols=128 Identities=13% Similarity=0.211 Sum_probs=102.6
Q ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHH
Q psy13058 5 PSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQK 84 (238)
Q Consensus 5 ~~l~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~k 84 (238)
.+++++.+.+..-. .+||+.|+-|++.|.+.+..+.---..+.|+.+ +..+++.|.-||..+++.
T Consensus 2 ~~le~l~~~l~qTl-~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~--------------~~~d~~~r~aaav~fKN~ 66 (960)
T KOG1992|consen 2 ANLETLANYLLQTL-SPDPSVRKPAERALRSLEGQQNYPLLLLNLVAN--------------GQQDPQIRVAAAVYFKNY 66 (960)
T ss_pred ccHHHHHHHHHhcC-CCCCccCchHHHHHHHhccCCCchHHHHHHHhc--------------cCcChhHHHHHHHHHHHH
Confidence 35778877776433 358999999999999999986644455666666 356899999999999999
Q ss_pred hhcccC-------CCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhc-cC-CCchHHHHHHHHhCcc
Q psy13058 85 VQNAFF-------ELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQ-MS-AWEKPVVYIIEKLSHK 151 (238)
Q Consensus 85 i~~~~~-------~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~-~~-~W~~~i~~l~~~~~~~ 151 (238)
|+++|. .+.+++++.+|.-++...-+ .+ ..+..+|..+|..++-+ +| .||+.++|+++.++++
T Consensus 67 iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~---s~-~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~ 138 (960)
T KOG1992|consen 67 IKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLS---SP-FNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSG 138 (960)
T ss_pred HHhccCcCCCCccccchhHHHHHHHHHHHHHhc---Cc-HHHHHHHHHHHHHHhccccchhhHHHHHHHHhhcccc
Confidence 999996 35567888888888776644 33 48999999999999975 46 4999999999999976
No 14
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=0.00014 Score=69.54 Aligned_cols=183 Identities=15% Similarity=0.124 Sum_probs=122.9
Q ss_pred CCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccCC-----CCh
Q psy13058 20 NPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFE-----LPS 94 (238)
Q Consensus 20 ~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~~-----l~~ 94 (238)
.+|+..|..|+.-|.+++|.|.--..|..++.+ ...++.++.-||..+++||.+.|+. .++
T Consensus 14 dada~~rt~AE~~Lk~leKqPgFv~all~i~s~--------------de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~ 79 (970)
T COG5656 14 DADAGKRTIAEAMLKDLEKQPGFVMALLHICSK--------------DEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKA 79 (970)
T ss_pred ccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhh--------------ccCCchhhHHHHHHHhhhhhhhhhhcccCCCCC
Confidence 468889999999999999999999999999987 2578999999999999999999985 445
Q ss_pred hhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhc-cC-C-CchHHHHHHHHhCcc--cchHHHHHHHhhhHhhhh
Q psy13058 95 ESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQ-MS-A-WEKPVVYIIEKLSHK--GSILALLEVLTVLPEEVN 169 (238)
Q Consensus 95 ~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~-~~-~-W~~~i~~l~~~~~~~--~~~~~~L~iL~~l~eEv~ 169 (238)
+.+.+.|..|.+-+..-...+|...|+-+-..+..++-. ++ + |+ ..+-..+.+.++ .++..+|..|. |+.
T Consensus 80 Dek~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~----elf 154 (970)
T COG5656 80 DEKSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLE----ELF 154 (970)
T ss_pred cccHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHH----HHH
Confidence 677788888877665433334456666776666666553 23 2 77 666666667665 34445555443 333
Q ss_pred c-ccCCh-hhHHHHHHHHHHhhhHHHHHHHHHHhccC-CCHHHHHHHHHHhhhcc
Q psy13058 170 V-LKLGK-NRREEFEEELKAAGPIVIEFLKTCQANCG-DNVSLQTKVLKCFTSWS 221 (238)
Q Consensus 170 ~-~~l~~-~rr~~l~~~l~~~~~~vl~~L~~~l~~~~-~~~~~~~~~l~c~~sWi 221 (238)
+ .+..- .+|.-+..-+.+-+|.+..+=+.+.+..+ ...++...+||.|++-+
T Consensus 155 kayRwk~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvc 209 (970)
T COG5656 155 KAYRWKYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVC 209 (970)
T ss_pred HHHhhhccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHH
Confidence 3 22221 23334444444556666666555555322 13577778888666544
No 15
>KOG2023|consensus
Probab=98.15 E-value=1.7e-05 Score=74.84 Aligned_cols=205 Identities=14% Similarity=0.177 Sum_probs=143.0
Q ss_pred CCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHH
Q psy13058 4 QPSLDTVYAVVHTLYL--NPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTM 81 (238)
Q Consensus 4 ~~~l~~v~~ai~~ly~--~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL 81 (238)
+|+-+.+.+.++.|-+ ++|++.|+.+..-|.+|+.-|+-=.-...+|.+ ..+.+...|-.|-.+|
T Consensus 6 ~p~e~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~-------------~~~~d~~~Rs~aGLlL 72 (885)
T KOG2023|consen 6 QPDEQGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIR-------------AKSEDVPTRSLAGLLL 72 (885)
T ss_pred cccHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEec-------------ccccchhHHHHhhhhH
Confidence 3555555555544433 468899999999999999999965555566665 1356677888999999
Q ss_pred HHHhhcccCCCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccC--CCchHHHHHHHHhCcc--cchHHH
Q psy13058 82 RQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMS--AWEKPVVYIIEKLSHK--GSILAL 157 (238)
Q Consensus 82 ~~ki~~~~~~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~--~W~~~i~~l~~~~~~~--~~~~~~ 157 (238)
++.++.+|..++++....+|..++.-+.. .+ +.||+-....+..++-..+ .||+.++.+.+.+.+. .+....
T Consensus 73 KNnvr~~~~~~~~~~~~yiKs~~l~~lgd---~~-~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA 148 (885)
T KOG2023|consen 73 KNNVRGHYNSIPSEVLDYIKSECLHGLGD---AS-PLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGA 148 (885)
T ss_pred hccccccccCCChHHHHHHHHHHHhhccC---ch-HHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchh
Confidence 99999999999999999999998777632 33 3888888888888877665 6999999999998765 455666
Q ss_pred HHHHhhhHhhhhc-ccCChhhHHHHHHHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHhhhcc--CchhHHHHHHHHH
Q psy13058 158 LEVLTVLPEEVNV-LKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWS--SGSLHDAATDCVS 234 (238)
Q Consensus 158 L~iL~~l~eEv~~-~~l~~~rr~~l~~~l~~~~~~vl~~L~~~l~~~~~~~~~~~~~l~c~~sWi--~~~l~~~a~~~l~ 234 (238)
+.-|..+.|+... .+.. ....-|.-..|..+++..+- +..+...+++|+...| ...-+...+|...
T Consensus 149 ~~AL~KIcEDsa~~lds~-----~~~rpl~~mipkfl~f~~h~------spkiRs~A~~cvNq~i~~~~qal~~~iD~Fl 217 (885)
T KOG2023|consen 149 FGALQKICEDSAQFLDSD-----VLTRPLNIMIPKFLQFFKHP------SPKIRSHAVGCVNQFIIIQTQALYVHIDKFL 217 (885)
T ss_pred HHHHHHHHhhhHHHHhhh-----cccCchHHhHHHHHHHHhCC------ChhHHHHHHhhhhheeecCcHHHHHHHHHHH
Confidence 7777777776544 1110 00112333344444444332 4678899999999988 4555555555555
Q ss_pred hh
Q psy13058 235 AL 236 (238)
Q Consensus 235 e~ 236 (238)
|+
T Consensus 218 e~ 219 (885)
T KOG2023|consen 218 EI 219 (885)
T ss_pred HH
Confidence 43
No 16
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=97.96 E-value=0.00039 Score=67.77 Aligned_cols=114 Identities=20% Similarity=0.258 Sum_probs=88.9
Q ss_pred CCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccCC-----CCh
Q psy13058 20 NPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFE-----LPS 94 (238)
Q Consensus 20 ~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~~-----l~~ 94 (238)
+.||..++.|++-|++..+.++ .+..|++- +.. ...+...|.-|+.-+++-|.++|.+ +.+
T Consensus 15 s~~p~s~k~AE~~Lrqwe~q~g---F~~kL~~I-~~~----------~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p 80 (947)
T COG5657 15 SPDPPSVKCAEERLRQWEKQHG---FALKLLSI-NLS----------AFNSMSLRWAALIQFKNYIDKHWREENGNSILP 80 (947)
T ss_pred CCCCchHhhHHHHHHhhhcccc---HHHHHHHH-Hhc----------cccchhHHHHHHHHHHhhHHHHhhhhcccCCCC
Confidence 5788889999999999999998 33333332 111 2478899999999999999999974 566
Q ss_pred hhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHh-ccC-CCchHHHHHHHHhCcc
Q psy13058 95 ESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLAL-QMS-AWEKPVVYIIEKLSHK 151 (238)
Q Consensus 95 ~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~-~~~-~W~~~i~~l~~~~~~~ 151 (238)
++...+|..++..+.+- ++ .+.-|.+.+++.++- -+| +||+.++|+++.++..
T Consensus 81 ~e~v~IR~~l~~lii~s---~n-~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~ 135 (947)
T COG5657 81 DENVLIRDELFSLIISS---SN-QLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSEK 135 (947)
T ss_pred ccchHHHHHHHHHHHcc---cc-hHHHHHHHHHHHHHhccCcccchhHHHHHHhhhccc
Confidence 66669999999998652 22 455588888888886 455 6999999999999884
No 17
>KOG2274|consensus
Probab=97.94 E-value=0.0008 Score=65.66 Aligned_cols=132 Identities=20% Similarity=0.315 Sum_probs=99.9
Q ss_pred CCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccCCC-------
Q psy13058 20 NPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFEL------- 92 (238)
Q Consensus 20 ~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~~l------- 92 (238)
++|+..|.+|+.-|.++-.+++ ...++.=... ....+...|-+|+-.|+..|.++|...
T Consensus 15 s~d~~vr~~AE~~l~qle~~~~-f~~aL~~va~-------------~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~ 80 (1005)
T KOG2274|consen 15 SADQNVRSQAETQLKQLELTEG-FGVALAEVAA-------------NKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYP 80 (1005)
T ss_pred CCChhHHHHHHHHHhccccchH-HHHHHHHHHh-------------CcccCchHHHHHHHHHHHHHHHhCCChHhhccCC
Confidence 5789999999999999999888 3333222221 135788899999999999999999753
Q ss_pred ---ChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHh-ccC-CCchHHHHHHHHhCcc--cchHHHHHHHhhhH
Q psy13058 93 ---PSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLAL-QMS-AWEKPVVYIIEKLSHK--GSILALLEVLTVLP 165 (238)
Q Consensus 93 ---~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~-~~~-~W~~~i~~l~~~~~~~--~~~~~~L~iL~~l~ 165 (238)
+.+.+..||+.|++.+. .+.+.+++-.+.+++.++- -+| +||..+.-+++.++++ .++...+++|..+.
T Consensus 81 ~~~~e~~K~~IRe~Ll~~l~----~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~ 156 (1005)
T KOG2274|consen 81 LIVSEEVKALIREQLLNLLD----DSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELS 156 (1005)
T ss_pred CcccHHHHHHHHHHHHhhhh----ccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 33457788888888775 2236899999999999886 456 5999999999888744 56677777777777
Q ss_pred hhhh
Q psy13058 166 EEVN 169 (238)
Q Consensus 166 eEv~ 169 (238)
.|+.
T Consensus 157 ~ev~ 160 (1005)
T KOG2274|consen 157 DEVD 160 (1005)
T ss_pred HHHH
Confidence 6663
No 18
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.0019 Score=60.51 Aligned_cols=129 Identities=13% Similarity=0.182 Sum_probs=91.8
Q ss_pred CCCHHHHHHHHHHHHHHhcChhh--HHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhh-----------
Q psy13058 20 NPNKTEKEKASQWLHQLQKSIYA--WKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQ----------- 86 (238)
Q Consensus 20 ~~d~~~~~qA~~~L~~fq~s~~a--W~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~----------- 86 (238)
++||..|..|+.-|.++++.+=. -....+.|-+ .+..++.|..|..+|++-+.
T Consensus 16 spD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d--------------~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~ 81 (858)
T COG5215 16 SPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCD--------------LNSNDQLRMVAGLILKNSLHANDPELQKGCS 81 (858)
T ss_pred CCCCCccccHHHHHHHhccccHHHHHHHHHHHHhc--------------cCCcHHHHHHHHHHHhhhhhcCCHHHHHHHH
Confidence 47888999999999999987621 1222222322 26789999999999998776
Q ss_pred cccCCCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHh-ccC--CCchHHHHHHHHhCcc---cchHHHHHH
Q psy13058 87 NAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLAL-QMS--AWEKPVVYIIEKLSHK---GSILALLEV 160 (238)
Q Consensus 87 ~~~~~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~-~~~--~W~~~i~~l~~~~~~~---~~~~~~L~i 160 (238)
..|-.+++|.++++|...+..|.. .-| -.-+--++.+++++- ..| .||+++..++...+.+ ....-.|.+
T Consensus 82 qrW~~~~~E~k~qvK~~al~aL~s---~ep-r~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~ 157 (858)
T COG5215 82 QRWLGMRHESKEQVKGMALRALKS---PEP-RFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGI 157 (858)
T ss_pred HhhccCCHHHHHHHHHHHHHHhcC---Ccc-HHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHH
Confidence 458899999999999999888854 223 556666677777664 334 4999999999988764 334444555
Q ss_pred HhhhHh
Q psy13058 161 LTVLPE 166 (238)
Q Consensus 161 L~~l~e 166 (238)
+....|
T Consensus 158 ~gy~ce 163 (858)
T COG5215 158 CGYHCE 163 (858)
T ss_pred HHHHhh
Confidence 555444
No 19
>KOG1824|consensus
Probab=92.98 E-value=9.2 Score=38.76 Aligned_cols=93 Identities=16% Similarity=0.267 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHHHhccCC--CchHHHHHHHHhCcc---cchHHHHHHHhhhHhhhhcccCChhhHHHHHHHHHHhhhH
Q psy13058 117 KNIITQLALALADLALQMSA--WEKPVVYIIEKLSHK---GSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPI 191 (238)
Q Consensus 117 ~~v~~kL~~~la~l~~~~~~--W~~~i~~l~~~~~~~---~~~~~~L~iL~~l~eEv~~~~l~~~rr~~l~~~l~~~~~~ 191 (238)
..||.|-|.+|+.++...+. ....+++++..+++. .........|..+.-..+. ++...+..-.|-
T Consensus 188 ~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~---------r~~~h~~~ivp~ 258 (1233)
T KOG1824|consen 188 LAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGH---------RFGSHLDKIVPL 258 (1233)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcc---------hhhcccchhhHH
Confidence 37899999999999988773 777888888888765 2334444444444443333 122222223444
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHhhhcc
Q psy13058 192 VIEFLKTCQANCGDNVSLQTKVLKCFTSWS 221 (238)
Q Consensus 192 vl~~L~~~l~~~~~~~~~~~~~l~c~~sWi 221 (238)
|.++++.. ..+++++.+.+++.+++.+
T Consensus 259 v~~y~~~~---e~~dDELrE~~lQale~fl 285 (1233)
T KOG1824|consen 259 VADYCNKI---EEDDDELREYCLQALESFL 285 (1233)
T ss_pred HHHHhccc---ccCcHHHHHHHHHHHHHHH
Confidence 44444444 2257889999999999887
No 20
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=88.52 E-value=3.7 Score=28.20 Aligned_cols=87 Identities=18% Similarity=0.142 Sum_probs=56.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccC
Q psy13058 11 YAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFF 90 (238)
Q Consensus 11 ~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~ 90 (238)
+..++.|-+.+++..|..|=..|.++. ++++-+....++. +.++.+|..|+..|.. +
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l~----------------d~~~~vr~~a~~aL~~-i----- 58 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG-DPEAIPALIELLK----------------DEDPMVRRAAARALGR-I----- 58 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT-HHHHHHHHHHHHT----------------SSSHHHHHHHHHHHHC-C-----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHc----------------CCCHHHHHHHHHHHHH-h-----
Confidence 445566656789999999999999774 5677777777674 4789999999999982 2
Q ss_pred CCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHH
Q psy13058 91 ELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALA 128 (238)
Q Consensus 91 ~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la 128 (238)
.. ....+.|.+.+.. .+...|+.....+|+
T Consensus 59 --~~---~~~~~~L~~~l~~---~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 59 --GD---PEAIPALIKLLQD---DDDEVVREAAAEALG 88 (88)
T ss_dssp --HH---HHTHHHHHHHHTC----SSHHHHHHHHHHHH
T ss_pred --CC---HHHHHHHHHHHcC---CCcHHHHHHHHhhcC
Confidence 11 2233333333322 233466777776664
No 21
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=87.20 E-value=1.8 Score=29.86 Aligned_cols=57 Identities=11% Similarity=0.043 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHH
Q psy13058 9 TVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTM 81 (238)
Q Consensus 9 ~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL 81 (238)
++...+..+...+|+..|.+|-..|.++. ++++++....++.+ +.+..++.-|+..|
T Consensus 31 ~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-~~~~~~~L~~~l~~---------------~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 31 EAIPALIELLKDEDPMVRRAAARALGRIG-DPEAIPALIKLLQD---------------DDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHCCH-HHHTHHHHHHHHTC----------------SSHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHcC---------------CCcHHHHHHHHhhc
Confidence 44445555556789999999999999996 58899999998887 56677788887765
No 22
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=85.72 E-value=16 Score=29.00 Aligned_cols=74 Identities=11% Similarity=0.042 Sum_probs=54.6
Q ss_pred CCchHHHHHHHHHHHHHhhcc-cCCCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCCCchHHHHHH
Q psy13058 68 ELGLEAVYFSAQTMRQKVQNA-FFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYII 145 (238)
Q Consensus 68 ~~~~~~~ffaaqtL~~ki~~~-~~~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~W~~~i~~l~ 145 (238)
+++++.|+.|...++.-+.+. |.-+-.. ...+-..++..|.+ ..+..++.-.+.+++.++.+..++|+...++.
T Consensus 36 s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~-~~~W~~~Ll~~L~~---~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~ 110 (165)
T PF08167_consen 36 SKSAYSRWAGLCLLKVTVEQCSWEILLSH-GSQWLRALLSILEK---PDPPSVLEAAIITLTRLFDLIRGKPTLTREIA 110 (165)
T ss_pred CCChhhHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHhcCCCchHHHHh
Confidence 477999999999999999876 6544332 23444446666655 33458888999999999998888999877764
No 23
>PTZ00429 beta-adaptin; Provisional
Probab=78.43 E-value=76 Score=31.72 Aligned_cols=110 Identities=14% Similarity=0.052 Sum_probs=71.3
Q ss_pred hcCCCCHHHHHHHHHHHHHHhc-Chh-hHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccCCCCh
Q psy13058 17 LYLNPNKTEKEKASQWLHQLQK-SIY-AWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPS 94 (238)
Q Consensus 17 ly~~~d~~~~~qA~~~L~~fq~-s~~-aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~~l~~ 94 (238)
+..++|.+.|+-..-||..+-+ .|+ +--++-.+..+ -.+.++.+|-.|..+|..-- .
T Consensus 76 ~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KD-------------l~d~Np~IRaLALRtLs~Ir--------~ 134 (746)
T PTZ00429 76 LAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQD-------------TTNSSPVVRALAVRTMMCIR--------V 134 (746)
T ss_pred HhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHH-------------cCCCCHHHHHHHHHHHHcCC--------c
Confidence 4556788999999999999887 555 55555555554 23678899999999887321 1
Q ss_pred hhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCC---CchHHHHHHHHhCc
Q psy13058 95 ESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSA---WEKPVVYIIEKLSH 150 (238)
Q Consensus 95 ~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~---W~~~i~~l~~~~~~ 150 (238)
..+-+.++..+.+....+..+||++-+.++..++-..++ =.++++.+...+..
T Consensus 135 ---~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D 190 (746)
T PTZ00429 135 ---SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLND 190 (746)
T ss_pred ---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcC
Confidence 233444444444332232349999999999999876553 12355555555544
No 24
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=75.85 E-value=68 Score=29.80 Aligned_cols=196 Identities=17% Similarity=0.092 Sum_probs=113.5
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcChhh-HHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccCCCChh
Q psy13058 17 LYLNPNKTEKEKASQWLHQLQKSIYA-WKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSE 95 (238)
Q Consensus 17 ly~~~d~~~~~qA~~~L~~fq~s~~a-W~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~~l~~~ 95 (238)
+..+.|...|+-+.=|+..+...+.. .-.+..-+.+ | -.+.++.++-.|..++..-. +++
T Consensus 50 l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~k-------d-----l~~~n~~~~~lAL~~l~~i~-------~~~ 110 (526)
T PF01602_consen 50 LISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQK-------D-----LNSPNPYIRGLALRTLSNIR-------TPE 110 (526)
T ss_dssp TCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-------H-----HCSSSHHHHHHHHHHHHHH--------SHH
T ss_pred HhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-------h-----hcCCCHHHHHHHHhhhhhhc-------ccc
Confidence 34467899999999999998886554 5555555544 1 13678899999999998633 455
Q ss_pred hHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCC-Cch-HHHHHHHHhCcc--cchHHHHHHHhhh---Hhhh
Q psy13058 96 SHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSA-WEK-PVVYIIEKLSHK--GSILALLEVLTVL---PEEV 168 (238)
Q Consensus 96 ~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~-W~~-~i~~l~~~~~~~--~~~~~~L~iL~~l---~eEv 168 (238)
-.+.+-..+.+.+.. ..| +||++.+.++..++-..++ -+. +++.+...+... ......+.++..+ ++..
T Consensus 111 ~~~~l~~~v~~ll~~---~~~-~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~ 186 (526)
T PF01602_consen 111 MAEPLIPDVIKLLSD---PSP-YVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSY 186 (526)
T ss_dssp HHHHHHHHHHHHHHS---SSH-HHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHH
T ss_pred hhhHHHHHHHHHhcC---Cch-HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHccCcchh
Confidence 555555555555532 444 9999999999999987764 333 577777777543 2234445555555 2210
Q ss_pred hc--------c----cCChhh-HHHHHHHHHHh-------h--hHHHHHHHHHHhccCCCHHHHHHHHHHhhhcc-Cchh
Q psy13058 169 NV--------L----KLGKNR-REEFEEELKAA-------G--PIVIEFLKTCQANCGDNVSLQTKVLKCFTSWS-SGSL 225 (238)
Q Consensus 169 ~~--------~----~l~~~r-r~~l~~~l~~~-------~--~~vl~~L~~~l~~~~~~~~~~~~~l~c~~sWi-~~~l 225 (238)
.+ + ....+. +..+-+.+... . ..+++.+...+++ .+..+...+.+++..+. .+++
T Consensus 187 ~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s--~~~~V~~e~~~~i~~l~~~~~~ 264 (526)
T PF01602_consen 187 KSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQS--SSPSVVYEAIRLIIKLSPSPEL 264 (526)
T ss_dssp TTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHSSSHHH
T ss_pred hhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhc--cccHHHHHHHHHHHHhhcchHH
Confidence 11 0 111111 11222222211 0 1234444444442 23456666666666666 4456
Q ss_pred HHHHHHHHHhhc
Q psy13058 226 HDAATDCVSALH 237 (238)
Q Consensus 226 ~~~a~~~l~e~~ 237 (238)
...+++.++.++
T Consensus 265 ~~~~~~~L~~lL 276 (526)
T PF01602_consen 265 LQKAINPLIKLL 276 (526)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHhhHHHHHHHh
Confidence 777888777665
No 25
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=73.99 E-value=33 Score=25.35 Aligned_cols=62 Identities=15% Similarity=0.307 Sum_probs=37.6
Q ss_pred HHHHHHhhhHhhhhccc--CC-hhhHHH---HH-------HHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHhhhcc
Q psy13058 156 ALLEVLTVLPEEVNVLK--LG-KNRREE---FE-------EELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWS 221 (238)
Q Consensus 156 ~~L~iL~~l~eEv~~~~--l~-~~rr~~---l~-------~~l~~~~~~vl~~L~~~l~~~~~~~~~~~~~l~c~~sWi 221 (238)
-+|.+++.+.+.+.+.. -+ .+|++. +. ..+....|+++..|++.++. +++...+++|+..-+
T Consensus 8 ~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~----~eL~~~al~~W~~~i 82 (107)
T smart00802 8 HFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI----PELRSLALRCWHVLI 82 (107)
T ss_pred HHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----hhHHHHHHHHHHHHH
Confidence 45667777777776633 11 233332 22 33334456777777776653 568888888888777
No 26
>KOG1240|consensus
Probab=67.17 E-value=93 Score=32.78 Aligned_cols=41 Identities=10% Similarity=0.064 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccC
Q psy13058 95 ESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMS 135 (238)
Q Consensus 95 ~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~ 135 (238)
.+.+.|.+.+-++...+..+++.+|++-|...|+.|.+.+.
T Consensus 570 ~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG 610 (1431)
T KOG1240|consen 570 TELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFG 610 (1431)
T ss_pred hHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh
Confidence 35667777777777766666656899999988777766543
No 27
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=66.02 E-value=50 Score=24.21 Aligned_cols=62 Identities=18% Similarity=0.389 Sum_probs=37.0
Q ss_pred HHHHHHhhhHhhhhccc---CChhhHHHH----------HHHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHhhhcc
Q psy13058 156 ALLEVLTVLPEEVNVLK---LGKNRREEF----------EEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWS 221 (238)
Q Consensus 156 ~~L~iL~~l~eEv~~~~---l~~~rr~~l----------~~~l~~~~~~vl~~L~~~l~~~~~~~~~~~~~l~c~~sWi 221 (238)
-+|.+++.+.+.+.+.. ....|+..+ +..+....|+++..|+..+.. .++...+++|+..-+
T Consensus 8 ~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~----~~l~~~al~~W~~fi 82 (107)
T PF08064_consen 8 HILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI----PELREEALSCWNCFI 82 (107)
T ss_pred HHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC----hhhHHHHHHHHHHHH
Confidence 34556666666665511 112333322 234444567777778777764 478888888888777
No 28
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=63.27 E-value=69 Score=25.34 Aligned_cols=28 Identities=36% Similarity=0.165 Sum_probs=15.9
Q ss_pred HHHHHHHhCcc--cchHHHHHHHhhhHhhh
Q psy13058 141 VVYIIEKLSHK--GSILALLEVLTVLPEEV 168 (238)
Q Consensus 141 i~~l~~~~~~~--~~~~~~L~iL~~l~eEv 168 (238)
+..+.+.++++ ...+.++.++.++.++.
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~ 56 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQC 56 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHh
Confidence 33444444442 45667777777766664
No 29
>PRK09687 putative lyase; Provisional
Probab=62.64 E-value=1e+02 Score=26.68 Aligned_cols=102 Identities=10% Similarity=-0.045 Sum_probs=61.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccCCCChhhHH
Q psy13058 19 LNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHV 98 (238)
Q Consensus 19 ~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~~l~~~~~~ 98 (238)
...|...|..|-..|.++. +++++..+..++.+ .++.+|.+|+.+|..--.. .....
T Consensus 33 ~d~d~~vR~~A~~aL~~~~-~~~~~~~l~~ll~~----------------~d~~vR~~A~~aLg~lg~~------~~~~~ 89 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRG-GQDVFRLAIELCSS----------------KNPIERDIGADILSQLGMA------KRCQD 89 (280)
T ss_pred hCCCHHHHHHHHHHHHhcC-cchHHHHHHHHHhC----------------CCHHHHHHHHHHHHhcCCC------ccchH
Confidence 3568888989999987665 68899999998775 6899999999999853211 10011
Q ss_pred HHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCCC-chHHHHHHH
Q psy13058 99 SLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAW-EKPVVYIIE 146 (238)
Q Consensus 99 ~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~W-~~~i~~l~~ 146 (238)
..-..|...+ ...+...|+...+.+|..+......| +..+..+..
T Consensus 90 ~a~~~L~~l~---~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~ 135 (280)
T PRK09687 90 NVFNILNNLA---LEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQI 135 (280)
T ss_pred HHHHHHHHHH---hcCCCHHHHHHHHHHHhcccccccccchHHHHHHHH
Confidence 1112222221 12222467777777777764333334 333444333
No 30
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=56.77 E-value=1.4e+02 Score=26.21 Aligned_cols=121 Identities=13% Similarity=0.203 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCh---hhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHH
Q psy13058 7 LDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSI---YAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQ 83 (238)
Q Consensus 7 l~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~---~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ 83 (238)
.+.|..+++-+-.-.........+.+|...-++- ..|.....|+.... ...--.||- ..-..
T Consensus 2 ~~~~~~~l~~f~~~k~~~l~~~L~~il~~ia~tg~~~~~W~~lk~l~~~kl--------------~~v~~e~~~-~~p~~ 66 (288)
T PF09184_consen 2 IEELLDALENFMKIKSKELPPELEDILEHIAKTGETWYPWSLLKSLFRHKL--------------EKVIDEFFE-SAPEE 66 (288)
T ss_pred hHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHH--------------HHHHHHHHh-cCccc
Confidence 4566677776665444556677888888887763 46888888887621 101112220 00001
Q ss_pred HhhcccCCCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCCCchHHHHHH
Q psy13058 84 KVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYII 145 (238)
Q Consensus 84 ki~~~~~~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~W~~~i~~l~ 145 (238)
.+. .........+..++..++.++..|.. +| |.+.+||-.|..=..+|..-..++..+-
T Consensus 67 ~~~-~~~~~~~~~~~~~~~~~~~~~~~f~~-~P-fTiqRlcEl~~~P~~~y~~~~k~~~ale 125 (288)
T PF09184_consen 67 SGP-QNPNVEPEDYEEMKERILELLDSFDE-PP-FTIQRLCELLLDPRKHYKTLDKFLRALE 125 (288)
T ss_pred cCC-CCCCcchhhHHHHHHHHHHHHHhcCC-CC-hhHHHHHHHHhChhhccccHHHHHHHHh
Confidence 111 11233445678999999999999875 55 9999999877665444333444444433
No 31
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=55.46 E-value=68 Score=26.46 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=48.8
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccCCCCh
Q psy13058 17 LYLNPNKTEKEKASQWLHQLQKS--IYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPS 94 (238)
Q Consensus 17 ly~~~d~~~~~qA~~~L~~fq~s--~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~~l~~ 94 (238)
++|-+.|..|+-|..|+...... ++-|.++..|+++ .--+.+++|.-.|..+.+ .+++
T Consensus 20 f~Gv~~P~~R~lak~~~~~~~~~~~~~~~~l~~~Lw~~----------------~~~E~r~~al~~l~~~~~----~~~~ 79 (208)
T cd07064 20 FYGIKTPERRALSKPFLKESKLPDKEELWELVLELWQQ----------------PEREYQYVAIDLLRKYKK----FLTP 79 (208)
T ss_pred cCCCChHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcc----------------hHHHHHHHHHHHHHHHHh----cCCH
Confidence 56667899999999999988775 6788889999987 447899999988876544 3555
Q ss_pred hhHHHH
Q psy13058 95 ESHVSL 100 (238)
Q Consensus 95 ~~~~~l 100 (238)
++...+
T Consensus 80 ~~~~~~ 85 (208)
T cd07064 80 EDLPLL 85 (208)
T ss_pred HHHHHH
Confidence 554433
No 32
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=52.09 E-value=1.3e+02 Score=24.54 Aligned_cols=165 Identities=18% Similarity=0.188 Sum_probs=0.0
Q ss_pred cCCchHHHHHHHHHHHHHhhcc-cCCCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCC-----CchH
Q psy13058 67 NELGLEAVYFSAQTMRQKVQNA-FFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSA-----WEKP 140 (238)
Q Consensus 67 ~~~~~~~~ffaaqtL~~ki~~~-~~~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~-----W~~~ 140 (238)
++.+=..+.=|.+.|+.-++.+ .....+.-...+++.+............ .|....|.++..++.+... -+.+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs-~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRS-KVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q ss_pred HHHHHHHhCcc------cchHHHHHHHhhhH--hhh-hc--ccCChhhHHHHHHHHHHhhhHHHHHHH---HHHhccCCC
Q psy13058 141 VVYIIEKLSHK------GSILALLEVLTVLP--EEV-NV--LKLGKNRREEFEEELKAAGPIVIEFLK---TCQANCGDN 206 (238)
Q Consensus 141 i~~l~~~~~~~------~~~~~~L~iL~~l~--eEv-~~--~~l~~~rr~~l~~~l~~~~~~vl~~L~---~~l~~~~~~ 206 (238)
+.-++..++.+ ....++..+....+ ..+ .. .....++...+|...-.....++.-.. ..++.
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~---- 171 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK---- 171 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG------
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc----
Q ss_pred HHHHHHHHHHhhhcc---CchhHHHHHHHHHhh
Q psy13058 207 VSLQTKVLKCFTSWS---SGSLHDAATDCVSAL 236 (238)
Q Consensus 207 ~~~~~~~l~c~~sWi---~~~l~~~a~~~l~e~ 236 (238)
......+.+++..=+ .+++|++|-.|+..+
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWAL 204 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
No 33
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=50.90 E-value=26 Score=27.29 Aligned_cols=30 Identities=17% Similarity=0.380 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHhccCCCHHHHHHHHHHhhhcc
Q psy13058 190 PIVIEFLKTCQANCGDNVSLQTKVLKCFTSWS 221 (238)
Q Consensus 190 ~~vl~~L~~~l~~~~~~~~~~~~~l~c~~sWi 221 (238)
+.+.+++..+|.+ .+.++...+|+|+-+|=
T Consensus 16 ~~l~~~~~~LL~~--~d~~vQklAL~cll~~k 45 (141)
T PF07539_consen 16 DELYDALLRLLSS--RDPEVQKLALDCLLTWK 45 (141)
T ss_pred HHHHHHHHHHHcC--CCHHHHHHHHHHHHHhC
Confidence 4566666677776 46899999999999995
No 34
>KOG1059|consensus
Probab=50.89 E-value=2.7e+02 Score=27.88 Aligned_cols=56 Identities=16% Similarity=0.183 Sum_probs=42.4
Q ss_pred CChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCC-CchHHHHHHHHhCcc
Q psy13058 92 LPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSA-WEKPVVYIIEKLSHK 151 (238)
Q Consensus 92 l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~-W~~~i~~l~~~~~~~ 151 (238)
.+++-...|..-++.+|.. .-| |||.|-...+-.+|.+||+ -...|.-+.+.+...
T Consensus 137 vTpdLARDLa~Dv~tLL~s---skp-YvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDp 193 (877)
T KOG1059|consen 137 VTPDLARDLADDVFTLLNS---SKP-YVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDP 193 (877)
T ss_pred cCchhhHHHHHHHHHHHhc---Cch-HHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCC
Confidence 3455667788888888754 334 9999999999999999985 666778888877543
No 35
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=49.44 E-value=35 Score=22.35 Aligned_cols=38 Identities=13% Similarity=0.297 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Q psy13058 2 ESQPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKS 39 (238)
Q Consensus 2 ~~~~~l~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s 39 (238)
+.+.+++++.+.+..=|+-+....++...+||.++.+.
T Consensus 27 ~g~~t~~ei~~~l~~~y~~~~~~~~~dv~~fl~~L~~~ 64 (68)
T PF05402_consen 27 DGPRTVEEIVDALAEEYDVDPEEAEEDVEEFLEQLREK 64 (68)
T ss_dssp -SSS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC
Confidence 44578999999999888543344688899999998763
No 36
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=47.61 E-value=72 Score=20.36 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHH
Q psy13058 95 ESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADL 130 (238)
Q Consensus 95 ~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l 130 (238)
++....-+.|.+.|..+..+-+.-+|.++|.+|..+
T Consensus 11 ~~~~~Fp~~L~~lL~~~~~~L~p~lR~~lv~aLiLL 46 (52)
T PF08158_consen 11 KETKDFPQELIDLLRNHHTVLDPDLRMKLVKALILL 46 (52)
T ss_pred HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHH
Confidence 344455566666666554432346788888777665
No 37
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=46.85 E-value=2.6e+02 Score=26.44 Aligned_cols=146 Identities=9% Similarity=0.045 Sum_probs=76.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHH-hcChhhHHHHHH--HHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhc
Q psy13058 11 YAVVHTLYLNPNKTEKEKASQWLHQL-QKSIYAWKIADE--MLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQN 87 (238)
Q Consensus 11 ~~ai~~ly~~~d~~~~~qA~~~L~~f-q~s~~aW~~~~~--lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~ 87 (238)
...+..+...++...|-++.+.+.++ +.|+++...|.. ++...... -.+.+.-++.=++.+|..-...
T Consensus 162 ~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~e---------L~~dDiLvqlnalell~~La~~ 232 (503)
T PF10508_consen 162 LSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKE---------LDSDDILVQLNALELLSELAET 232 (503)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHH---------hcCccHHHHHHHHHHHHHHHcC
Confidence 34445555454667788888888887 468999999886 66652111 1256677888888888766653
Q ss_pred ccCCCChhhHHHHHHHHHHHHHHhccCC--chhHHHHHHHHHHHHHhccC-----CCchHHHHHHHHhCcc--cchHHHH
Q psy13058 88 AFFELPSESHVSLRDSLIEHLCRTNDTS--GKNIITQLALALADLALQMS-----AWEKPVVYIIEKLSHK--GSILALL 158 (238)
Q Consensus 88 ~~~~l~~~~~~~lr~~Ll~~l~~~~~~~--~~~v~~kL~~~la~l~~~~~-----~W~~~i~~l~~~~~~~--~~~~~~L 158 (238)
... +.==....+-+.|.+.+......+ +.+..--.......++...+ .+|.++..+...+.++ ....+.+
T Consensus 233 ~~g-~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~ 311 (503)
T PF10508_consen 233 PHG-LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAF 311 (503)
T ss_pred hhH-HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 221 000011123333444443222222 11222222223333333222 2566776777666554 3346666
Q ss_pred HHHhhhHh
Q psy13058 159 EVLTVLPE 166 (238)
Q Consensus 159 ~iL~~l~e 166 (238)
+.+..|..
T Consensus 312 dtlg~igs 319 (503)
T PF10508_consen 312 DTLGQIGS 319 (503)
T ss_pred HHHHHHhC
Confidence 66666653
No 38
>KOG2160|consensus
Probab=42.52 E-value=2.6e+02 Score=25.23 Aligned_cols=94 Identities=17% Similarity=0.109 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHHHhc---------ChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccCC
Q psy13058 21 PNKTEKEKASQWLHQLQK---------SIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFE 91 (238)
Q Consensus 21 ~d~~~~~qA~~~L~~fq~---------s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~~ 91 (238)
.+++.|..|.+-|+.+-. +-.+|......+.+ .+.++|-.||.++..-+.++.
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~----------------~~~~lR~~Aa~Vigt~~qNNP-- 156 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLEN----------------SDAELRELAARVIGTAVQNNP-- 156 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcC----------------CcHHHHHHHHHHHHHHHhcCH--
Confidence 577788888777777765 55778888886665 889999999999999998753
Q ss_pred CChhhHHHHHHHHHHHH-HHhccCCchhHHHHHHHHHHHHHhcc
Q psy13058 92 LPSESHVSLRDSLIEHL-CRTNDTSGKNIITQLALALADLALQM 134 (238)
Q Consensus 92 l~~~~~~~lr~~Ll~~l-~~~~~~~~~~v~~kL~~~la~l~~~~ 134 (238)
..+...+-..-+..| ..+...++--+++|.--+++.++-..
T Consensus 157 --~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~ 198 (342)
T KOG2160|consen 157 --KSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNN 198 (342)
T ss_pred --HHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcC
Confidence 223222222222322 23333334478899998998887653
No 39
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=42.02 E-value=3.8e+02 Score=26.99 Aligned_cols=124 Identities=16% Similarity=0.135 Sum_probs=75.8
Q ss_pred CCCHHHHHHHHHHHHHHhcChh--hHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccCCCChhhH
Q psy13058 20 NPNKTEKEKASQWLHQLQKSIY--AWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESH 97 (238)
Q Consensus 20 ~~d~~~~~qA~~~L~~fq~s~~--aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~~l~~~~~ 97 (238)
+.|.+.|+--+-||..+-+... +--.|-.+..+ -.+.++++|-||.+++. .+..
T Consensus 66 trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kD-------------l~d~N~~iR~~AlR~ls--------~l~~--- 121 (757)
T COG5096 66 TRDVELKRLLYLYLERYAKLKPELALLAVNTIQKD-------------LQDPNEEIRGFALRTLS--------LLRV--- 121 (757)
T ss_pred hcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh-------------ccCCCHHHHHHHHHHHH--------hcCh---
Confidence 5689999999999999987543 11222222222 13688999999999996 1221
Q ss_pred HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCC-CchH-HHHHHHH-hCcc--cchHHHHHHHhhhHhh
Q psy13058 98 VSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSA-WEKP-VVYIIEK-LSHK--GSILALLEVLTVLPEE 167 (238)
Q Consensus 98 ~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~-W~~~-i~~l~~~-~~~~--~~~~~~L~iL~~l~eE 167 (238)
.+|-..++.-+.+.-..+..+||+..+.+++.++-...+ .++. ..++... ...+ .-+...+.-|..+.+|
T Consensus 122 ~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 122 KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 234444455554433333359999999999999954332 3333 3333333 3332 3456667777777777
No 40
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=40.41 E-value=1.3e+02 Score=21.09 Aligned_cols=34 Identities=15% Similarity=0.323 Sum_probs=25.4
Q ss_pred HHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHhh
Q psy13058 183 EELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFT 218 (238)
Q Consensus 183 ~~l~~~~~~vl~~L~~~l~~~~~~~~~~~~~l~c~~ 218 (238)
+.|+...+.|++++...... +++++...+++|+.
T Consensus 51 ~~i~SGW~~if~il~~aa~~--~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 51 ENIKSGWKVIFSILRAAAKD--NDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHhccHHHHHHHHHHHhC--CCccHHHHHHHHHh
Confidence 35566678889998888775 35678888888874
No 41
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=39.89 E-value=1.8e+02 Score=22.59 Aligned_cols=70 Identities=20% Similarity=0.304 Sum_probs=40.9
Q ss_pred HHHHHHHHhCcc--cchHHHHHHHhhhHhhhhcccCChhhHHHHHHHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHh
Q psy13058 140 PVVYIIEKLSHK--GSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCF 217 (238)
Q Consensus 140 ~i~~l~~~~~~~--~~~~~~L~iL~~l~eEv~~~~l~~~rr~~l~~~l~~~~~~vl~~L~~~l~~~~~~~~~~~~~l~c~ 217 (238)
.+..+...+++. ......|.+|..+...++. .++.++.. ...++-|..++... .+..+..+++..+
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~---------~fh~evas--k~Fl~eL~kl~~~~-~~~~Vk~kil~li 105 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGK---------RFHQEVAS--RDFTQELKKLINDR-VHPTVKEKLREVV 105 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH---------HHHHHHhh--HHHHHHHHHHhccc-CCHHHHHHHHHHH
Confidence 445555555543 2335567777777777665 22222221 24444444455443 4678889999999
Q ss_pred hhcc
Q psy13058 218 TSWS 221 (238)
Q Consensus 218 ~sWi 221 (238)
..|-
T Consensus 106 ~~W~ 109 (144)
T cd03568 106 KQWA 109 (144)
T ss_pred HHHH
Confidence 9997
No 42
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=39.84 E-value=1.7e+02 Score=22.25 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=39.8
Q ss_pred HHHHHHHHhCcc--cchHHHHHHHhhhHhhhhcccCChhhHHHHHHHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHh
Q psy13058 140 PVVYIIEKLSHK--GSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCF 217 (238)
Q Consensus 140 ~i~~l~~~~~~~--~~~~~~L~iL~~l~eEv~~~~l~~~rr~~l~~~l~~~~~~vl~~L~~~l~~~~~~~~~~~~~l~c~ 217 (238)
.+..+...++++ ......|.+|..+...++. .++.++. ....++-|..++....+...+..+++..+
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~---------~f~~ev~--s~~fl~~L~~l~~~~~~~~~Vk~kil~li 106 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGS---------KFHLEVA--SKEFLNELVKLIKPKYPLPLVKKRILELI 106 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH---------HHHHHHH--hHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 344444555443 2345557777777666554 2222322 12444555556655433344889999999
Q ss_pred hhcc
Q psy13058 218 TSWS 221 (238)
Q Consensus 218 ~sWi 221 (238)
.+|-
T Consensus 107 ~~W~ 110 (133)
T smart00288 107 QEWA 110 (133)
T ss_pred HHHH
Confidence 9997
No 43
>KOG2171|consensus
Probab=39.38 E-value=4.7e+02 Score=27.38 Aligned_cols=77 Identities=12% Similarity=0.046 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHH-HHhccCCchh
Q psy13058 40 IYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHL-CRTNDTSGKN 118 (238)
Q Consensus 40 ~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~~l~~~~~~~lr~~Ll~~l-~~~~~~~~~~ 118 (238)
|+.|+-...+|.+ +..+.++..|--|..+|..-... ++......+++. ...+ +....++ ..
T Consensus 113 ~e~WPell~~L~q------------~~~S~~~~~rE~al~il~s~~~~----~~~~~~~~~~~l-~~lf~q~~~d~s-~~ 174 (1075)
T KOG2171|consen 113 PEKWPELLQFLFQ------------STKSPNPSLRESALLILSSLPET----FGNTLQPHLDDL-LRLFSQTMTDPS-SP 174 (1075)
T ss_pred ccchHHHHHHHHH------------HhcCCCcchhHHHHHHHHhhhhh----hccccchhHHHH-HHHHHHhccCCc-ch
Confidence 4579999999988 23456677777777777755442 222222222222 2222 2222233 34
Q ss_pred HHHHHHHHHHHHHhcc
Q psy13058 119 IITQLALALADLALQM 134 (238)
Q Consensus 119 v~~kL~~~la~l~~~~ 134 (238)
||..-..++.+++...
T Consensus 175 vr~~a~rA~~a~~~~~ 190 (1075)
T KOG2171|consen 175 VRVAAVRALGAFAEYL 190 (1075)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888888888888765
No 44
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=37.03 E-value=3.4e+02 Score=25.07 Aligned_cols=125 Identities=17% Similarity=0.126 Sum_probs=68.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhccc
Q psy13058 10 VYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAF 89 (238)
Q Consensus 10 v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~ 89 (238)
+...+..+..+.++...-+|-..+..+..++..++.+...|... -.+.+++++|.|..+|..-+..+.
T Consensus 232 ~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~l------------L~s~~~nvr~~~L~~L~~l~~~~~ 299 (526)
T PF01602_consen 232 IIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKL------------LSSSDPNVRYIALDSLSQLAQSNP 299 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHH------------HTSSSHHHHHHHHHHHHHHCCHCH
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHH------------hhcccchhehhHHHHHHHhhcccc
Confidence 44444444445566666777777777777777666666666551 124667777777777766655441
Q ss_pred CCC------------------------------ChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCC-Cc
Q psy13058 90 FEL------------------------------PSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSA-WE 138 (238)
Q Consensus 90 ~~l------------------------------~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~-W~ 138 (238)
..+ +++....+-+.|++++.. .+..-++..+..++..++.+++. ..
T Consensus 300 ~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~---~~d~~~~~~~i~~I~~la~~~~~~~~ 376 (526)
T PF01602_consen 300 PAVFNQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSE---LSDPDFRRELIKAIGDLAEKFPPDAE 376 (526)
T ss_dssp HHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH---C--HHHHHHHHHHHHHHHHHHGSSHH
T ss_pred hhhhhhhhhhheecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHh---ccchhhhhhHHHHHHHHHhccCchHH
Confidence 111 112222333333333311 21224777788888888877764 34
Q ss_pred hHHHHHHHHhC
Q psy13058 139 KPVVYIIEKLS 149 (238)
Q Consensus 139 ~~i~~l~~~~~ 149 (238)
.+++.++..+.
T Consensus 377 ~~v~~l~~ll~ 387 (526)
T PF01602_consen 377 WYVDTLLKLLE 387 (526)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 45555555554
No 45
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=35.30 E-value=1.8e+02 Score=23.26 Aligned_cols=46 Identities=11% Similarity=0.070 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHH
Q psy13058 21 PNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMR 82 (238)
Q Consensus 21 ~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~ 82 (238)
.++.+.++|.+.|.+.. +-.-..|++||+. ...+..||-||-+.|+
T Consensus 58 ~~~~e~~e~~~lL~~W~--~i~~~~aLeLL~~--------------~f~~~~VR~yAV~~L~ 103 (166)
T cd00870 58 SDEQEVKQALELMPKWA--KIDIEDALELLSP--------------YFTNPVVRKYAVSRLK 103 (166)
T ss_pred CCHHHHHHHHHHHhcCC--CCCHHHHHHHcCc--------------cCCCHHHHHHHHHHHH
Confidence 45666777777776653 3345577777776 3456778888888777
No 46
>PF12758 DUF3813: Protein of unknown function (DUF3813); InterPro: IPR024217 This entry represents a family of Bacillus proteins. Their function is unknown.
Probab=34.67 E-value=93 Score=20.76 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy13058 7 LDTVYAVVHTLYLNPNKTEKEKASQWLHQLQ 37 (238)
Q Consensus 7 l~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq 37 (238)
+..-..|+.+.|.++.+++|.|-.++=.++.
T Consensus 30 i~rAKnAlsSAyanss~aE~~QL~q~Q~qL~ 60 (63)
T PF12758_consen 30 IQRAKNALSSAYANSSDAEREQLRQFQDQLD 60 (63)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4445788999999988988887666544443
No 47
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=33.91 E-value=96 Score=24.61 Aligned_cols=42 Identities=24% Similarity=0.414 Sum_probs=27.7
Q ss_pred hHHHHHHHhhhHhhhhcccCChhhHHHHHHHHHHhhh---HHHHHHHHHHhc
Q psy13058 154 ILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGP---IVIEFLKTCQAN 202 (238)
Q Consensus 154 ~~~~L~iL~~l~eEv~~~~l~~~rr~~l~~~l~~~~~---~vl~~L~~~l~~ 202 (238)
...+=.+|..||+|+.+ |..+-+.|++.+. .+++-++.+...
T Consensus 98 A~~LK~iLSrIPdei~d-------R~~FL~tIK~IAsaIK~lLdAvn~v~~~ 142 (154)
T PF06840_consen 98 ATALKRILSRIPDEISD-------RRTFLETIKEIASAIKKLLDAVNEVFKN 142 (154)
T ss_dssp HHHHHHHHHTHHHHTTS-------HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCcHhhcc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778899999999988 4555555555444 445555555543
No 48
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=32.04 E-value=3.3e+02 Score=23.32 Aligned_cols=96 Identities=14% Similarity=0.155 Sum_probs=53.1
Q ss_pred CCchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccC---C--CchHHH
Q psy13058 68 ELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMS---A--WEKPVV 142 (238)
Q Consensus 68 ~~~~~~~ffaaqtL~~ki~~~~~~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~---~--W~~~i~ 142 (238)
..+.++|.-|...|.+-- ++.+.+..+..++-..+.-...|+. .++.+...+|..+...-. + =.....
T Consensus 106 ~lns~~Q~agLrlL~nLt------v~~~~~~~l~~~i~~ll~LL~~G~~-~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~ 178 (254)
T PF04826_consen 106 PLNSEVQLAGLRLLTNLT------VTNDYHHMLANYIPDLLSLLSSGSE-KTKVQVLKVLVNLSENPDMTRELLSAQVLS 178 (254)
T ss_pred CCCCHHHHHHHHHHHccC------CCcchhhhHHhhHHHHHHHHHcCCh-HHHHHHHHHHHHhccCHHHHHHHHhccchh
Confidence 467788888888888653 3344455566666555544445664 677776666666654311 0 112334
Q ss_pred HHHHHhCcccc---hHHHHHHHhhhHhhhhc
Q psy13058 143 YIIEKLSHKGS---ILALLEVLTVLPEEVNV 170 (238)
Q Consensus 143 ~l~~~~~~~~~---~~~~L~iL~~l~eEv~~ 170 (238)
.++..|..+.. ..-.|.++..|-+-+.+
T Consensus 179 ~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 179 SFLSLFNSSESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred HHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence 55556655433 34445555555554443
No 49
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=31.65 E-value=1.9e+02 Score=21.08 Aligned_cols=30 Identities=17% Similarity=0.400 Sum_probs=20.5
Q ss_pred HHHHHHHHhhhcc-CchhHHHHHHHHHhhcC
Q psy13058 209 LQTKVLKCFTSWS-SGSLHDAATDCVSALHR 238 (238)
Q Consensus 209 ~~~~~l~c~~sWi-~~~l~~~a~~~l~e~~~ 238 (238)
...++..|+.+=+ .+++++.|++|-..+||
T Consensus 53 ~~pQI~a~L~sal~~~~l~~~al~~W~~fi~ 83 (107)
T PF08064_consen 53 ARPQIMACLQSALEIPELREEALSCWNCFIK 83 (107)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 3445555555555 67899999999776654
No 50
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=31.36 E-value=4.1e+02 Score=24.33 Aligned_cols=26 Identities=19% Similarity=0.480 Sum_probs=19.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy13058 10 VYAVVHTLYLNPNKTEKEKASQWLHQL 36 (238)
Q Consensus 10 v~~ai~~ly~~~d~~~~~qA~~~L~~f 36 (238)
+.+.+ .++.+.|+.+|.....+|..+
T Consensus 135 i~~Ll-~l~~S~D~rER~~lk~~l~~i 160 (409)
T PF01603_consen 135 IKKLL-ELFDSPDPRERDYLKTILHRI 160 (409)
T ss_dssp HHHHH-HTTTSSTHHHHHHHHHHHHHH
T ss_pred HHHHH-HHcCCCCHHHHHHHHHHHHHH
Confidence 34433 567778999999988888884
No 51
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=31.14 E-value=95 Score=16.89 Aligned_cols=19 Identities=11% Similarity=0.041 Sum_probs=15.0
Q ss_pred CCchHHHHHHHHHHHHHhh
Q psy13058 68 ELGLEAVYFSAQTMRQKVQ 86 (238)
Q Consensus 68 ~~~~~~~ffaaqtL~~ki~ 86 (238)
+.+++||..|+..|..-.+
T Consensus 11 D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 11 DPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp -SSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 4789999999999876543
No 52
>COG5502 Uncharacterized conserved protein [Function unknown]
Probab=31.13 E-value=2.5e+02 Score=21.73 Aligned_cols=76 Identities=22% Similarity=0.214 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhc------ChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHH---HHHHhhcccCCCChhhH
Q psy13058 27 EKASQWLHQLQK------SIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQT---MRQKVQNAFFELPSESH 97 (238)
Q Consensus 27 ~qA~~~L~~fq~------s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqt---L~~ki~~~~~~l~~~~~ 97 (238)
.+.++|+.++|. .++||.+....|.-. -+. =...+..-||||. |+.-...+|..-++...
T Consensus 7 ~~~~~fi~ev~~~a~l~s~~~A~~~~~avL~tl-Rdr----------L~~eea~~~aaqLP~~ir~~~~~~p~~~~~~~~ 75 (135)
T COG5502 7 QQFDEFIGEVQAEAGLQSRNDAYRITRAVLRTL-RDR----------LPGEEAADFAAQLPMEIRDILVDGPDLGPPKLP 75 (135)
T ss_pred HHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HHH----------cChhHHHHHHHhCCHHHHHHHhcCCcCCCCCCc
Confidence 357888888765 567888887777652 111 2345666777763 45555555666666666
Q ss_pred HHHHHHHHHHHHHhcc
Q psy13058 98 VSLRDSLIEHLCRTND 113 (238)
Q Consensus 98 ~~lr~~Ll~~l~~~~~ 113 (238)
-.+++++......+..
T Consensus 76 ~s~~dFl~Rv~~~~g~ 91 (135)
T COG5502 76 FSLDDFLTRVANKFGL 91 (135)
T ss_pred ccHHHHHHHHHHccCC
Confidence 6677777666655543
No 53
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=30.72 E-value=2.1e+02 Score=22.94 Aligned_cols=62 Identities=16% Similarity=0.150 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccCCCChhhHHHH
Q psy13058 21 PNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSL 100 (238)
Q Consensus 21 ~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~~l~~~~~~~l 100 (238)
.|+++..+|...|.+.. +-.-..|.+||+. ...++.||-||-+.|+ .+++++ |
T Consensus 51 ~~~~~v~e~~~lL~~W~--~i~~~~aLeLL~~--------------~f~d~~VR~yAV~~L~--------~~sd~e---L 103 (171)
T cd00872 51 NKRDDVAQMYQLLKRWP--KLKPEQALELLDC--------------NFPDEHVREFAVRCLE--------KLSDDE---L 103 (171)
T ss_pred CCHHHHHHHHHHHHCCC--CCCHHHHHHHCCC--------------cCCCHHHHHHHHHHHH--------hCCHHH---H
Confidence 46677777777777663 3344577777776 3456788888887776 344443 4
Q ss_pred HHHHHHHHH
Q psy13058 101 RDSLIEHLC 109 (238)
Q Consensus 101 r~~Ll~~l~ 109 (238)
..+|++.++
T Consensus 104 ~~yL~QLVQ 112 (171)
T cd00872 104 LQYLLQLVQ 112 (171)
T ss_pred HHHHHHHHH
Confidence 455555554
No 54
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=30.51 E-value=1.9e+02 Score=20.15 Aligned_cols=90 Identities=17% Similarity=0.175 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHHHHhcC----------hhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhccc
Q psy13058 20 NPNKTEKEKASQWLHQLQKS----------IYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAF 89 (238)
Q Consensus 20 ~~d~~~~~qA~~~L~~fq~s----------~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~ 89 (238)
.+++..|..|=.-|..+-.. .++++....+|.+ .++.++..++.+|.+-....
T Consensus 18 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~----------------~~~~v~~~a~~~L~~l~~~~- 80 (120)
T cd00020 18 SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS----------------EDEEVVKAALWALRNLAAGP- 80 (120)
T ss_pred cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC----------------CCHHHHHHHHHHHHHHccCc-
Confidence 34566666666666665543 2666666667665 57899999999998776532
Q ss_pred CCCChhhHH-HHHHHHHHHHHHhccCCchhHHHHHHHHHHHH
Q psy13058 90 FELPSESHV-SLRDSLIEHLCRTNDTSGKNIITQLALALADL 130 (238)
Q Consensus 90 ~~l~~~~~~-~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l 130 (238)
++... ..+..++..+...-..+..-++...+.+|..+
T Consensus 81 ----~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 81 ----EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred ----HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 22222 22233445444333222236777777666654
No 55
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=30.42 E-value=2e+02 Score=20.45 Aligned_cols=72 Identities=11% Similarity=0.085 Sum_probs=44.0
Q ss_pred CchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCCCchHHHHHHHHh
Q psy13058 69 LGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYIIEKL 148 (238)
Q Consensus 69 ~~~~~~ffaaqtL~~ki~~~~~~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~W~~~i~~l~~~~ 148 (238)
..+.+|-.|..+|+.-|++.- .+......+-+.+++.| ..+..||-=-...+|+.++-..++ ..+..++..+
T Consensus 15 p~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L----~d~DsyVYL~aI~~L~~La~~~p~--~vl~~L~~~y 86 (92)
T PF10363_consen 15 PLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQL----KDEDSYVYLNAIKGLAALADRHPD--EVLPILLDEY 86 (92)
T ss_pred CCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHc----CCCCchHHHHHHHHHHHHHHHChH--HHHHHHHHHH
Confidence 567799999999999999754 34444444444444443 222347777677777777665332 2444444443
No 56
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=30.09 E-value=2.6e+02 Score=21.56 Aligned_cols=70 Identities=19% Similarity=0.292 Sum_probs=37.7
Q ss_pred HHHHHHHHhCcc--cchHHHHHHHhhhHhhhhcccCChhhHHHHHHHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHh
Q psy13058 140 PVVYIIEKLSHK--GSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCF 217 (238)
Q Consensus 140 ~i~~l~~~~~~~--~~~~~~L~iL~~l~eEv~~~~l~~~rr~~l~~~l~~~~~~vl~~L~~~l~~~~~~~~~~~~~l~c~ 217 (238)
.+..+...++++ ......|.+|..+...++. .++.++.. ...++-|..++.. ..+..+..+++..+
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~---------~fh~evas--~~fl~~l~~l~~~-~~~~~Vk~kil~li 109 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGT---------HFHDEVAS--REFMDELKDLIKT-TKNEEVRQKILELI 109 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCH---------HHHHHHhh--HHHHHHHHHHHcc-cCCHHHHHHHHHHH
Confidence 444555555443 2345557777777666544 12222221 1333333344432 24578888999999
Q ss_pred hhcc
Q psy13058 218 TSWS 221 (238)
Q Consensus 218 ~sWi 221 (238)
.+|-
T Consensus 110 ~~W~ 113 (142)
T cd03569 110 QAWA 113 (142)
T ss_pred HHHH
Confidence 9997
No 57
>PF14576 SEO_N: Sieve element occlusion N-terminus
Probab=29.91 E-value=2e+02 Score=25.23 Aligned_cols=66 Identities=20% Similarity=0.332 Sum_probs=43.3
Q ss_pred ChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCC-CchHHHHHHHHhCcccchHHHHHHHhhhHhhhhc
Q psy13058 93 PSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSA-WEKPVVYIIEKLSHKGSILALLEVLTVLPEEVNV 170 (238)
Q Consensus 93 ~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~-W~~~i~~l~~~~~~~~~~~~~L~iL~~l~eEv~~ 170 (238)
.+++...-.-.+++.|..|. =-.|+..+||++++.|++ | ++.++.+++...-.+-+|+-+|+=+..
T Consensus 90 g~~~aH~TTm~Il~~Ls~Ys------WDAK~VLtLAAFAl~YGeFw------lLaq~~~~n~LakSlA~LkqlP~i~~~ 156 (286)
T PF14576_consen 90 GEEDAHQTTMSILNMLSSYS------WDAKAVLTLAAFALEYGEFW------LLAQIYPTNPLAKSLAILKQLPDILEH 156 (286)
T ss_pred CCchHhHHHHHHHHHhhcCC------cHHHHHHHHHHHHHHhhhHH------HHhhhcccCHHHHHHHHHhcchhhhhh
Confidence 34555666666777776553 224677899999998876 5 244444445566778888888876655
No 58
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=29.76 E-value=2.7e+02 Score=22.61 Aligned_cols=46 Identities=13% Similarity=0.024 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHH
Q psy13058 21 PNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMR 82 (238)
Q Consensus 21 ~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~ 82 (238)
.++.+..++.+.|.... |-.-..|.+||+. ...++.|+-||.+.|+
T Consensus 56 ~~~~e~~e~~~ll~~W~--~~~~~~aL~LL~~--------------~~~~~~Vr~yAV~~L~ 101 (184)
T smart00145 56 SDADEVAQALSLLKKWA--PLDPEDALELLSP--------------KFPDPFVRAYAVERLE 101 (184)
T ss_pred CCHHHHHHHHHHHHcCC--CCCHHHHHHHhCc--------------cCCCHHHHHHHHHHHH
Confidence 35555666666666542 3444566666665 2345667777766665
No 59
>COG1869 RbsD ABC-type ribose transport system, auxiliary component [Carbohydrate transport and metabolism]
Probab=29.62 E-value=2.1e+02 Score=22.13 Aligned_cols=45 Identities=31% Similarity=0.397 Sum_probs=36.0
Q ss_pred cchHHHHHHHhhhHhhhhcccCChhhHHHHHHHHHHhhhHHHHHHHHHHhc
Q psy13058 152 GSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQAN 202 (238)
Q Consensus 152 ~~~~~~L~iL~~l~eEv~~~~l~~~rr~~l~~~l~~~~~~vl~~L~~~l~~ 202 (238)
.+++-+++++.++-+|+.- .+.-+-++++++.|...+.|.+.++.
T Consensus 46 ~GvPsF~qvl~vv~~em~V------E~~ilAeEike~np~~~~~L~~~~~~ 90 (135)
T COG1869 46 AGVPSFLQVLAVVLEEMQV------EAVILAEEIKEHNPQLHEALLTLLTQ 90 (135)
T ss_pred cCCCcHHHHHHHHHHHHHH------HHHHHHHHHHHhCHHHHHHHHHHHHh
Confidence 4578899999999998754 34566778999999999988887764
No 60
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=29.00 E-value=76 Score=21.10 Aligned_cols=31 Identities=23% Similarity=0.514 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhccC--C---CHHHHHHHHHHhh----hcc
Q psy13058 191 IVIEFLKTCQANCG--D---NVSLQTKVLKCFT----SWS 221 (238)
Q Consensus 191 ~vl~~L~~~l~~~~--~---~~~~~~~~l~c~~----sWi 221 (238)
.+++++++.+.... + .-+++..+++|++ ||+
T Consensus 12 SLM~LlSs~l~p~~~~d~~kaldiCaeIL~cLE~R~isWl 51 (64)
T PF03511_consen 12 SLMGLLSSYLAPKEGADSLKALDICAEILGCLEKRKISWL 51 (64)
T ss_pred HHHHHHHHhcCcccccccHHHHHHHHHHHHHHHhCCCcHH
Confidence 67788888776542 1 1468899999997 786
No 61
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=28.95 E-value=2.5e+02 Score=24.45 Aligned_cols=142 Identities=18% Similarity=0.154 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHH-H-
Q psy13058 7 LDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQ-K- 84 (238)
Q Consensus 7 l~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~-k- 84 (238)
+.+....+..|-+-+-.+.+++++.||.+|.-...--....+| +. +..+-+||.++. +|+ .
T Consensus 89 v~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~L-SK---------------GnqQKIQfisav-iHePeL 151 (300)
T COG4152 89 VEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKEL-SK---------------GNQQKIQFISAV-IHEPEL 151 (300)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHh-hh---------------hhhHHHHHHHHH-hcCCCE
Confidence 3333444556666667788999999999987655433333333 33 355666766643 332 1
Q ss_pred --hhcccCCCChhhHHHHHHHHHHHHHHhcc---CCchh-HHHHHHHHHHHHHhccCCCchHHHHHHHHhCcc---cchH
Q psy13058 85 --VQNAFFELPSESHVSLRDSLIEHLCRTND---TSGKN-IITQLALALADLALQMSAWEKPVVYIIEKLSHK---GSIL 155 (238)
Q Consensus 85 --i~~~~~~l~~~~~~~lr~~Ll~~l~~~~~---~~~~~-v~~kL~~~la~l~~~~~~W~~~i~~l~~~~~~~---~~~~ 155 (238)
+..-|+.|+|-+.+.||+.++++=..-.. .+.+. =..+||.-+..+---..--...+.++-..++.. ..-.
T Consensus 152 lILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gkk~~~ies~ 231 (300)
T COG4152 152 LILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRLVIESD 231 (300)
T ss_pred EEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcCCceEEEecc
Confidence 22447899999999999999877643211 11111 244788766555432223555677777766654 2223
Q ss_pred HHHHHHhhhH
Q psy13058 156 ALLEVLTVLP 165 (238)
Q Consensus 156 ~~L~iL~~l~ 165 (238)
..++.|..+|
T Consensus 232 ~s~eeL~~ip 241 (300)
T COG4152 232 LSLEELANIP 241 (300)
T ss_pred CchHHHhcCC
Confidence 4455555554
No 62
>PHA02513 V1 structural protein V1; Reviewed
Probab=27.49 E-value=96 Score=23.19 Aligned_cols=37 Identities=5% Similarity=0.040 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChh
Q psy13058 5 PSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIY 41 (238)
Q Consensus 5 ~~l~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~~ 41 (238)
.+-+|+++|+..+|+.=|....+.|.+|..--++.|.
T Consensus 22 ft~eqi~ea~kif~qtwdgnii~sa~~fveva~~npk 58 (135)
T PHA02513 22 FTKEQIAEATKIFYQTWDGNIISSARRFVEVAKANPK 58 (135)
T ss_pred cCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCc
Confidence 4679999999999998888888899999887777664
No 63
>PF09058 L27_1: L27_1; InterPro: IPR015143 The L27 domain is a protein interaction module that exists in a large family of scaffold proteins, functioning as an organisation centre of large protein assemblies required for the establishment and maintenance of cell polarity. L27 domains form specific heterotetrameric complexes, in which each domain contains three alpha-helices []. ; PDB: 3LRA_A 1RSO_A.
Probab=27.04 E-value=96 Score=20.78 Aligned_cols=33 Identities=6% Similarity=0.112 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q psy13058 6 SLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQK 38 (238)
Q Consensus 6 ~l~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~ 38 (238)
.++.++.....|-.+.|...|..++..+.-||.
T Consensus 11 ALelLe~y~~~L~~~~D~~lr~~ierli~ifkS 43 (64)
T PF09058_consen 11 ALELLEEYHNKLSRPEDEELRTAIERLINIFKS 43 (64)
T ss_dssp HHHHHHHHHHTTSSSS-CCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH
Confidence 466777777777778888899999999999987
No 64
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=25.68 E-value=1.7e+02 Score=17.93 Aligned_cols=33 Identities=12% Similarity=0.029 Sum_probs=22.6
Q ss_pred HHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHhh
Q psy13058 184 ELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFT 218 (238)
Q Consensus 184 ~l~~~~~~vl~~L~~~l~~~~~~~~~~~~~l~c~~ 218 (238)
.+....+.++..|...|++. +..+...+..+++
T Consensus 21 ~~~~~~~~~~~~L~~~L~d~--~~~VR~~A~~aLg 53 (55)
T PF13513_consen 21 LLQPYLPELLPALIPLLQDD--DDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHTTSS--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHh
Confidence 44556778888888888653 4567777777665
No 65
>KOG4646|consensus
Probab=25.08 E-value=1.8e+02 Score=22.95 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChhhHHHHHHH
Q psy13058 7 LDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEM 49 (238)
Q Consensus 7 l~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~l 49 (238)
++=+...+..+|..+|-+.|.|.-+-|..|--.|.-|....++
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql 57 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQL 57 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHh
Confidence 5566788889999899999999999999999999999976654
No 66
>KOG1060|consensus
Probab=24.69 E-value=7.6e+02 Score=25.20 Aligned_cols=86 Identities=14% Similarity=0.158 Sum_probs=46.6
Q ss_pred CCchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCCCchHHHHHHHH
Q psy13058 68 ELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYIIEK 147 (238)
Q Consensus 68 ~~~~~~~ffaaqtL~~ki~~~~~~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~W~~~i~~l~~~ 147 (238)
+.++.|.+-+||.++.- =|.++...+-..|+..|.... -++.-+-+.++.+....++ .+.--++.
T Consensus 298 S~n~sVVmA~aql~y~l-------AP~~~~~~i~kaLvrLLrs~~-----~vqyvvL~nIa~~s~~~~~---lF~P~lKs 362 (968)
T KOG1060|consen 298 SRNPSVVMAVAQLFYHL-------APKNQVTKIAKALVRLLRSNR-----EVQYVVLQNIATISIKRPT---LFEPHLKS 362 (968)
T ss_pred cCCcHHHHHHHhHHHhh-------CCHHHHHHHHHHHHHHHhcCC-----cchhhhHHHHHHHHhcchh---hhhhhhhc
Confidence 46677777777776522 244566677777777665422 3333344455555554332 11111222
Q ss_pred -h-Ccc---cchHHHHHHHhhhHhhh
Q psy13058 148 -L-SHK---GSILALLEVLTVLPEEV 168 (238)
Q Consensus 148 -~-~~~---~~~~~~L~iL~~l~eEv 168 (238)
+ .+. .....-|++|+.|..|-
T Consensus 363 Ffv~ssDp~~vk~lKleiLs~La~es 388 (968)
T KOG1060|consen 363 FFVRSSDPTQVKILKLEILSNLANES 388 (968)
T ss_pred eEeecCCHHHHHHHHHHHHHHHhhhc
Confidence 1 111 23456688998888874
No 67
>PF05536 Neurochondrin: Neurochondrin
Probab=23.87 E-value=6.5e+02 Score=24.13 Aligned_cols=60 Identities=12% Similarity=0.249 Sum_probs=43.1
Q ss_pred CChhhHHHHHHHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHhhhcc---CchhHHHHHHH
Q psy13058 173 LGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWS---SGSLHDAATDC 232 (238)
Q Consensus 173 l~~~rr~~l~~~l~~~~~~vl~~L~~~l~~~~~~~~~~~~~l~c~~sWi---~~~l~~~a~~~ 232 (238)
+.++...+++..|.+.+..|+++|...-.....+......+++++++|+ ...+++.+...
T Consensus 339 ~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v~~L 401 (543)
T PF05536_consen 339 LDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEVYGL 401 (543)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 3455567888889999999999998876643223338888999999999 33356666543
No 68
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=23.84 E-value=2.6e+02 Score=19.59 Aligned_cols=86 Identities=14% Similarity=0.133 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccCCCChhhHHH
Q psy13058 20 NPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVS 99 (238)
Q Consensus 20 ~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~~l~~~~~~~ 99 (238)
.-+++++..+..++.++..++..=..+..++... ....... ..+...++..+ .++++.+..
T Consensus 15 ~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~-----~~~~~~l~~~~-~~~~~~r~~ 75 (106)
T cd07316 15 RVSEAEIQAARALMDQMGLDAEARREAIRLFNEG-------------KESDFGL-----EEYARQFRRAC-GGRPELLLQ 75 (106)
T ss_pred CcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-------------CcCCCCH-----HHHHHHHHHHH-CCCHHHHHH
Confidence 3578899999999999887766666777777651 0111111 22222233322 367777777
Q ss_pred HHHHHHHHHHHhccCC----chhHHHHHHHH
Q psy13058 100 LRDSLIEHLCRTNDTS----GKNIITQLALA 126 (238)
Q Consensus 100 lr~~Ll~~l~~~~~~~----~~~v~~kL~~~ 126 (238)
+-..++.... +.|. +..+.++++..
T Consensus 76 ~l~~l~~vA~--ADG~~~~~E~~~l~~ia~~ 104 (106)
T cd07316 76 LLEFLFQIAY--ADGELSEAERELLRRIARL 104 (106)
T ss_pred HHHHHHHHHH--HcCCCCHHHHHHHHHHHHH
Confidence 7777766653 3332 24556666544
No 69
>PF14846 DUF4485: Domain of unknown function (DUF4485)
Probab=23.77 E-value=2.3e+02 Score=19.83 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccCCCChh
Q psy13058 21 PNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSE 95 (238)
Q Consensus 21 ~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~~l~~~ 95 (238)
++..+|..|..||.++..-+. - .... ...+.+.....-++-+..+..=|.+.|++
T Consensus 21 ~~~~~k~~a~~Wl~KL~~~~~---~---~~~~--------------~~RN~Y~~~Ll~~l~~~~L~~PF~~~Pp~ 75 (85)
T PF14846_consen 21 PDKSEKQRAALWLKKLCEPPH---N---VEEK--------------KNRNEYASLLLHCLQQGRLEGPFTKPPPD 75 (85)
T ss_pred CCHHHHHHHHHHHHHHcCCCC---C---HHHH--------------HHHHHHHHHHHHHHhcCccCCCCCCCCCC
Confidence 457799999999999998541 0 1111 13566777777777777777667777665
No 70
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=22.58 E-value=1.6e+02 Score=27.68 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHhccC--CC---------HHHHHHHHHHhhhccCchhHHHHHHHHHhhcC
Q psy13058 189 GPIVIEFLKTCQANCG--DN---------VSLQTKVLKCFTSWSSGSLHDAATDCVSALHR 238 (238)
Q Consensus 189 ~~~vl~~L~~~l~~~~--~~---------~~~~~~~l~c~~sWi~~~l~~~a~~~l~e~~~ 238 (238)
.|.++++|.++.+... .. ..+..+.++.+..=-+++.+.+|+++|++|||
T Consensus 32 ~~~ImDlLLklIs~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~ 92 (475)
T PF04499_consen 32 TPAIMDLLLKLISTDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIR 92 (475)
T ss_pred CcHHHHHHHHHHccCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 5788888888776431 11 13445555555433378899999999999986
No 71
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=22.00 E-value=3.9e+02 Score=20.85 Aligned_cols=46 Identities=13% Similarity=0.029 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHH
Q psy13058 21 PNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMR 82 (238)
Q Consensus 21 ~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~ 82 (238)
.++++..++.+.|... .+-.-..|.++|.. ...++.++-||.+.|+
T Consensus 51 ~~~~~~~e~~~lL~~W--~~~~~~~aL~LL~~--------------~~~~~~vr~yAv~~L~ 96 (152)
T cd00864 51 NDDEEVSELYQLLKWW--APLSPEDALELLSP--------------KYPDPVVRQYAVRVLE 96 (152)
T ss_pred CCHHHHHHHHHHHhcC--CCCCHHHHHHHcCC--------------cCCCHHHHHHHHHHHH
Confidence 5677777777777665 33334577888876 3456888888888776
No 72
>PF10188 Oscp1: Organic solute transport protein 1; InterPro: IPR019332 Organic solute carrier protein 1, or Oscp1, is a family of proteins conserved from plants to humans. It is called organic solute transport protein or oxido-red-nitro domain-containing protein 1, however no reference could be find to confirm the function of the protein.
Probab=20.32 E-value=83 Score=25.45 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhc
Q psy13058 71 LEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTN 112 (238)
Q Consensus 71 ~~~~ffaaqtL~~ki~~~~~~l~~~~~~~lr~~Ll~~l~~~~ 112 (238)
++++... .-...++..-|..+++++...+|+.|+.+++.+.
T Consensus 113 ~~~~~~v-~~~~~~~~~~y~~ls~~~~~~iR~~ll~flqd~~ 153 (173)
T PF10188_consen 113 PEVQALV-DEVFNRLIEFYGKLSPGEFQLIRQTLLNFLQDYH 153 (173)
T ss_pred HHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhCcCc
Confidence 4444333 2334455667889999999999999999997554
No 73
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=20.21 E-value=4.2e+02 Score=27.07 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=12.7
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcC
Q psy13058 16 TLYLNPNKTEKEKASQWLHQLQKS 39 (238)
Q Consensus 16 ~ly~~~d~~~~~qA~~~L~~fq~s 39 (238)
.+.+..|+..|..|-.-|.++...
T Consensus 782 ~ll~D~d~~VR~aA~~aLg~~g~~ 805 (897)
T PRK13800 782 ALTGDPDPLVRAAALAALAELGCP 805 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHhcCCc
Confidence 344445555555555555555443
Done!