Query psy13058
Match_columns 238
No_of_seqs 123 out of 717
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 18:23:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13058.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13058hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hat_C Exportin-1; heat repeat 100.0 8.6E-33 3E-37 274.7 22.5 217 5-238 13-263 (1023)
2 3gjx_A Exportin-1; transport, 100.0 8.1E-33 2.8E-37 274.8 19.8 217 5-238 25-275 (1073)
3 2x19_B Importin-13; nuclear tr 100.0 1.2E-30 4.3E-35 256.7 20.7 217 5-237 21-267 (963)
4 3ibv_A Exportin-T; karyopherin 100.0 1E-29 3.5E-34 252.0 22.6 215 5-238 3-260 (980)
5 2x1g_F Cadmus; transport prote 100.0 9.8E-30 3.3E-34 251.1 15.0 218 1-237 1-272 (971)
6 3m1i_C Exportin-1; heat repeat 100.0 8.7E-27 3E-31 232.3 23.0 217 4-237 12-262 (1049)
7 3a6p_A Exportin-5; exportin-5, 99.9 5.2E-26 1.8E-30 229.7 21.7 220 5-238 8-276 (1204)
8 1wa5_C Importin alpha RE-expor 99.7 2.9E-15 1E-19 148.0 22.0 172 7-199 4-185 (960)
9 4fdd_A Transportin-1; heat rep 99.6 1.2E-14 4.2E-19 141.4 17.9 145 6-168 11-159 (852)
10 2bpt_A Importin beta-1 subunit 99.6 6.3E-14 2.1E-18 135.2 18.2 185 7-220 3-208 (861)
11 1ibr_B P95, importin beta-1 su 99.5 3E-13 1E-17 121.2 16.4 180 10-221 3-202 (462)
12 1qgr_A Protein (importin beta 99.4 1.2E-11 4.1E-16 119.5 17.5 181 9-221 2-202 (876)
13 1u6g_C TIP120 protein, CAND1; 96.9 0.021 7.2E-07 57.4 15.4 140 8-169 6-166 (1230)
14 2vgl_B AP-2 complex subunit be 94.0 3.5 0.00012 38.0 17.6 127 17-166 57-189 (591)
15 1b3u_A Protein (protein phosph 90.9 5 0.00017 35.9 13.9 110 5-135 7-119 (588)
16 1u6g_C TIP120 protein, CAND1; 89.5 15 0.00052 36.6 17.1 96 68-167 17-116 (1230)
17 2qk1_A Protein STU2; STU2P, XM 88.4 9 0.00031 31.1 18.4 170 19-219 26-217 (249)
18 4hxt_A De novo protein OR329; 87.0 9.3 0.00032 29.8 18.3 134 10-165 4-156 (252)
19 4fdd_A Transportin-1; heat rep 85.9 6.3 0.00021 37.7 11.5 133 7-151 88-227 (852)
20 1b3u_A Protein (protein phosph 85.6 19 0.00065 32.0 17.0 121 11-151 89-215 (588)
21 3ul1_B Importin subunit alpha- 85.2 21 0.0007 32.0 16.3 104 10-134 59-174 (510)
22 4b8j_A Importin subunit alpha- 83.7 23 0.00079 31.4 16.7 120 8-148 74-211 (528)
23 1w63_A Adapter-related protein 81.2 34 0.0012 31.5 16.0 168 20-221 81-262 (618)
24 4db8_A Armadillo-repeat protei 80.7 19 0.00063 28.3 13.6 92 39-151 10-108 (252)
25 4db6_A Armadillo repeat protei 80.1 17 0.0006 27.6 16.8 173 12-219 15-206 (210)
26 1xqr_A HSPBP1 protein; armadil 80.1 25 0.00086 29.4 13.9 108 6-134 26-156 (296)
27 1oyz_A Hypothetical protein YI 77.2 26 0.00091 28.0 21.5 180 12-220 27-219 (280)
28 4db6_A Armadillo repeat protei 76.8 22 0.00076 27.0 13.0 92 39-151 10-108 (210)
29 2vgl_A Adaptor protein complex 76.8 47 0.0016 30.7 20.0 113 17-150 82-198 (621)
30 3ltm_A Alpha-REP4; protein eng 76.3 23 0.0008 27.0 17.3 169 10-218 21-199 (211)
31 2vgl_B AP-2 complex subunit be 70.8 62 0.0021 29.4 13.5 127 18-164 95-229 (591)
32 4ffb_C Protein STU2; tubulin f 70.3 40 0.0014 27.3 10.3 30 209-238 180-212 (278)
33 1wa5_B Importin alpha subunit; 68.0 65 0.0022 28.5 14.4 116 10-150 89-226 (530)
34 3ltj_A Alpharep-4; protein eng 65.1 42 0.0014 25.3 18.0 171 7-217 13-193 (201)
35 2jdq_A Importin alpha-1 subuni 64.1 67 0.0023 27.3 15.2 115 17-150 115-245 (450)
36 4db8_A Armadillo-repeat protei 61.1 56 0.0019 25.4 14.7 97 16-133 61-168 (252)
37 2bpt_A Importin beta-1 subunit 57.9 1.2E+02 0.0041 28.2 16.4 110 7-131 93-209 (861)
38 4hxt_A De novo protein OR329; 53.6 73 0.0025 24.4 18.9 168 17-219 52-238 (252)
39 2z6h_A Catenin beta-1, beta-ca 50.8 1.5E+02 0.005 27.1 17.8 120 10-150 58-193 (644)
40 1wa5_B Importin alpha subunit; 50.1 1.3E+02 0.0046 26.4 19.3 124 21-165 143-285 (530)
41 3tpo_A Importin subunit alpha- 49.5 1.4E+02 0.0048 26.5 17.6 104 10-134 78-193 (529)
42 2vgl_A Adaptor protein complex 49.3 1.6E+02 0.0055 27.1 14.5 116 11-149 331-451 (621)
43 3grl_A General vesicular trans 47.5 1.8E+02 0.006 27.4 11.1 125 4-148 73-217 (651)
44 2jdq_A Importin alpha-1 subuni 47.2 1.3E+02 0.0044 25.4 18.9 118 13-151 69-204 (450)
45 2of3_A ZYG-9; multifunctional 47.0 1.2E+02 0.0041 25.0 16.1 77 69-151 58-144 (266)
46 1te4_A Conserved protein MTH18 46.3 73 0.0025 22.3 6.9 51 16-83 49-99 (131)
47 2qk2_A LP04448P; mini spindles 41.4 1.2E+02 0.0042 23.5 17.8 168 17-219 23-202 (242)
48 1te4_A Conserved protein MTH18 39.6 45 0.0015 23.5 4.8 47 19-82 83-129 (131)
49 2z6g_A B-catenin; FULL-length, 39.0 2.5E+02 0.0087 26.4 21.2 111 20-151 161-288 (780)
50 1w63_A Adapter-related protein 36.8 2.5E+02 0.0084 25.6 11.3 71 68-149 361-432 (618)
51 1oyz_A Hypothetical protein YI 36.7 1.5E+02 0.0053 23.3 16.7 60 14-84 59-118 (280)
52 3ltj_A Alpharep-4; protein eng 36.4 1.3E+02 0.0045 22.3 17.7 96 19-151 55-150 (201)
53 2qk2_A LP04448P; mini spindles 33.4 1.7E+02 0.0057 22.7 17.5 157 7-187 54-233 (242)
54 1ibr_B P95, importin beta-1 su 32.7 2.2E+02 0.0075 23.9 19.4 93 70-166 187-288 (462)
55 2efe_A Similarity to vacuolar 31.9 1.4E+02 0.0047 24.4 7.2 84 1-108 3-88 (267)
56 2z6g_A B-catenin; FULL-length, 30.1 3.5E+02 0.012 25.4 18.0 120 10-150 194-329 (780)
57 3jxy_A Alkylpurine DNA glycosy 29.1 2.1E+02 0.007 22.6 7.6 62 21-102 39-102 (232)
58 4b8j_A Importin subunit alpha- 27.8 3E+02 0.01 23.9 19.2 109 22-151 131-256 (528)
59 1qgr_A Protein (importin beta 27.1 3.8E+02 0.013 24.8 18.0 64 70-135 463-540 (876)
60 3ajm_A Programmed cell death p 26.8 89 0.003 24.9 4.8 17 154-170 100-116 (213)
61 3ul1_B Importin subunit alpha- 24.8 3.5E+02 0.012 23.7 12.7 79 68-151 285-370 (510)
62 3l9t_A Putative uncharacterize 22.5 3.1E+02 0.011 22.2 11.4 66 6-86 68-133 (240)
63 3opb_A SWI5-dependent HO expre 20.5 5.7E+02 0.019 24.5 18.3 82 155-236 234-321 (778)
64 3ltm_A Alpha-REP4; protein eng 20.4 2.7E+02 0.0091 20.6 15.4 98 17-151 58-155 (211)
65 3tpo_A Importin subunit alpha- 20.3 4.4E+02 0.015 23.1 16.7 79 68-151 304-389 (529)
No 1
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=8.6e-33 Score=274.66 Aligned_cols=217 Identities=16% Similarity=0.268 Sum_probs=193.0
Q ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHH
Q psy13058 5 PSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQK 84 (238)
Q Consensus 5 ~~l~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~k 84 (238)
.+++++++++.++|+|+++ .|++|++||++||++|++|..|..+|.. +.++++||||+++|+++
T Consensus 13 ~dv~~Le~av~~ly~p~~~-~r~~A~~~L~~~q~sp~aw~~~~~iL~~---------------s~~~~vR~faa~~Lk~~ 76 (1023)
T 4hat_C 13 LDIALLDQVVSTFYQGSGV-QQKQAQEILTKFQDNPDAWQKADQILQF---------------STNPQSKFIALSILDKL 76 (1023)
T ss_dssp CCHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHCTTGGGGHHHHHHH---------------CCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHcCccHHHHHHHHhcC---------------CCCHHHHHHHHHHHHHH
Confidence 5899999999999988765 9999999999999999999999999987 57899999999999999
Q ss_pred hhcccCCCChhhHHHHHHHHHHHHHHhccCC-----chhHHHHHHHHHHHHHhcc-C-CCchHHHHHHHHhCcc-cchHH
Q psy13058 85 VQNAFFELPSESHVSLRDSLIEHLCRTNDTS-----GKNIITQLALALADLALQM-S-AWEKPVVYIIEKLSHK-GSILA 156 (238)
Q Consensus 85 i~~~~~~l~~~~~~~lr~~Ll~~l~~~~~~~-----~~~v~~kL~~~la~l~~~~-~-~W~~~i~~l~~~~~~~-~~~~~ 156 (238)
|+++|..++++++..||+.|++++..+..++ ++++++|+|.+++.++.+. | .||+++.+++..++++ .++.+
T Consensus 77 I~~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~~~~~~~ 156 (1023)
T 4hat_C 77 ITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCEN 156 (1023)
T ss_dssp HHHHGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTCHHHHHH
T ss_pred HHhhhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCCHHHHHH
Confidence 9999999999999999999999998765432 3699999999999999986 3 6999999999999876 56889
Q ss_pred HHHHHhhhHhhhhc---ccCChhhHHHHHHHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHhhhcc------------
Q psy13058 157 LLEVLTVLPEEVNV---LKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWS------------ 221 (238)
Q Consensus 157 ~L~iL~~l~eEv~~---~~l~~~rr~~l~~~l~~~~~~vl~~L~~~l~~~~~~~~~~~~~l~c~~sWi------------ 221 (238)
+|.+|+.|+||+.+ ..++..||..+++.|+.+.|.|++++..+++.. .+.++...+|+|+.+|+
T Consensus 157 ~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~-~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ 235 (1023)
T 4hat_C 157 NMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQG-ASSSLIVATLESLLRYLHWIPYRYIYETN 235 (1023)
T ss_dssp HHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTTSCTHHHHSSS
T ss_pred HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhCCHHHhcchh
Confidence 99999999999977 345678899999999999999999999999875 34566777777777655
Q ss_pred -----------CchhHHHHHHHHHhhcC
Q psy13058 222 -----------SGSLHDAATDCVSALHR 238 (238)
Q Consensus 222 -----------~~~l~~~a~~~l~e~~~ 238 (238)
.+++|++|+|||++|++
T Consensus 236 ll~~l~~~~L~~~~~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 236 ILELLSTKFMTSPDTRAITLKCLTEVSN 263 (1023)
T ss_dssp HHHHHHTHHHHSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHc
Confidence 68899999999999974
No 2
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=8.1e-33 Score=274.83 Aligned_cols=217 Identities=16% Similarity=0.293 Sum_probs=189.3
Q ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHH
Q psy13058 5 PSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQK 84 (238)
Q Consensus 5 ~~l~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~k 84 (238)
.+++.+++++.++|+| ++++|++|++||++||++|++|..|..+|.. +.++++||||+++|+++
T Consensus 25 ~Dv~~Le~lv~~ly~p-~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~---------------s~~~~vR~fAa~~L~~~ 88 (1073)
T 3gjx_A 25 LDINLLDNVVNCLYHG-EGAQQRMAQEVLTHLKEHPDAWTRVDTILEF---------------SQNMNTKYYGLQILENV 88 (1073)
T ss_dssp CSHHHHHHHHHTTTCS-SHHHHHHHHHHHHTSSCCSCHHHHHTCC------------------CCSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCchHHHHHHHHhcC---------------CCCHHHHHHHHHHHHHH
Confidence 5899999999999987 6789999999999999999999999999987 67899999999999999
Q ss_pred hhcccCCCChhhHHHHHHHHHHHHHHhccCC-----chhHHHHHHHHHHHHHhcc-C-CCchHHHHHHHHhCcc-cchHH
Q psy13058 85 VQNAFFELPSESHVSLRDSLIEHLCRTNDTS-----GKNIITQLALALADLALQM-S-AWEKPVVYIIEKLSHK-GSILA 156 (238)
Q Consensus 85 i~~~~~~l~~~~~~~lr~~Ll~~l~~~~~~~-----~~~v~~kL~~~la~l~~~~-~-~W~~~i~~l~~~~~~~-~~~~~ 156 (238)
|+++|..++++++..||++|++++..+..++ ++.+++|+|.+++.++.+. | .||+++.+++..++++ .++..
T Consensus 89 I~~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~~~~~~~~ 168 (1073)
T 3gjx_A 89 IKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQN 168 (1073)
T ss_dssp HHHTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHCHHHHHH
T ss_pred HHhhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999998765432 3578899999999999985 4 5999999999998755 56789
Q ss_pred HHHHHhhhHhhhhc---ccCChhhHHHHHHHHHHhhhHHHHHHHHHHhccCCCHHH---HHHHHHHhhhcc---------
Q psy13058 157 LLEVLTVLPEEVNV---LKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSL---QTKVLKCFTSWS--------- 221 (238)
Q Consensus 157 ~L~iL~~l~eEv~~---~~l~~~rr~~l~~~l~~~~~~vl~~L~~~l~~~~~~~~~---~~~~l~c~~sWi--------- 221 (238)
+|++|+.|+||+.+ .+++..||..+++.|++++|.++.++..+++..+ +.++ ...+++||.+||
T Consensus 169 ~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~-~~~lv~~~L~~L~~~~sWI~i~~i~~~~ 247 (1073)
T 3gjx_A 169 NMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQ-NAPLVHATLETLLRFLNWIPLGYIFETK 247 (1073)
T ss_dssp HHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTTSCTHHHHSSS
T ss_pred HHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHHhcCHHHhccch
Confidence 99999999999876 2356788999999999999999999999998753 3443 447888888998
Q ss_pred -----------CchhHHHHHHHHHhhcC
Q psy13058 222 -----------SGSLHDAATDCVSALHR 238 (238)
Q Consensus 222 -----------~~~l~~~a~~~l~e~~~ 238 (238)
.+++|++|+|||+||++
T Consensus 248 ll~~L~~~~L~~~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 248 LISTLIYKFLNVPMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence 68999999999999973
No 3
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.97 E-value=1.2e-30 Score=256.74 Aligned_cols=217 Identities=31% Similarity=0.501 Sum_probs=187.9
Q ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHH
Q psy13058 5 PSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQK 84 (238)
Q Consensus 5 ~~l~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~k 84 (238)
.++++|+++++++|+++|++.|++|++||++||++|++|..|..||.. +.++++|||||++|+++
T Consensus 21 ~~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~---------------~~~~~vr~~aa~~L~~~ 85 (963)
T 2x19_B 21 FTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQP---------------DKVPEIQYFGASALHIK 85 (963)
T ss_dssp CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTST---------------TSCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcC---------------CCchHHHHHHHHHHHHH
Confidence 689999999999998889999999999999999999999999999987 67899999999999999
Q ss_pred hhcccCCCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccC--CCchHHHHHHHHhCc------c-cchH
Q psy13058 85 VQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMS--AWEKPVVYIIEKLSH------K-GSIL 155 (238)
Q Consensus 85 i~~~~~~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~--~W~~~i~~l~~~~~~------~-~~~~ 155 (238)
|+++|..++++++..+|++|++++..+..+ +++|++|+|.+++.++.+.. .||+++.+++..+++ + ....
T Consensus 86 i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~-~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~ 164 (963)
T 2x19_B 86 ISRYWSDIPTDQYESLKAQLFTQITRFASG-SKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCL 164 (963)
T ss_dssp HHHCGGGSCGGGHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHH
T ss_pred HHhCHHhCCHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHH
Confidence 999999999999999999999999886534 47999999999999999754 699999999999875 3 3678
Q ss_pred HHHHHHhhhHhhhhcccCChhhHHHHHHHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHhhhcc--------------
Q psy13058 156 ALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWS-------------- 221 (238)
Q Consensus 156 ~~L~iL~~l~eEv~~~~l~~~rr~~l~~~l~~~~~~vl~~L~~~l~~~~~~~~~~~~~l~c~~sWi-------------- 221 (238)
.++.+|+.++||+.+...+..||..+++.+..+.+.|+.++.++++...++..+...+++|+.+|+
T Consensus 165 ~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~ 244 (963)
T 2x19_B 165 ALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQ 244 (963)
T ss_dssp HHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHH
T ss_pred HHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHH
Confidence 999999999999977555667888899999999999999999999776444468999999999997
Q ss_pred -------CchhHHHHHHHHHhhc
Q psy13058 222 -------SGSLHDAATDCVSALH 237 (238)
Q Consensus 222 -------~~~l~~~a~~~l~e~~ 237 (238)
.++++++|++|+.+++
T Consensus 245 ~l~~~l~~~~~~~~a~~~l~~i~ 267 (963)
T 2x19_B 245 AAFAALQDSELFDSSVEAIVNAI 267 (963)
T ss_dssp HHHHHTTSTTTHHHHHHHHHHHH
T ss_pred HHHHHhCCchHHHHHHHHHHHHH
Confidence 3778999999999986
No 4
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.97 E-value=1e-29 Score=251.96 Aligned_cols=215 Identities=18% Similarity=0.220 Sum_probs=178.1
Q ss_pred CCHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHH
Q psy13058 5 PSLDTVYAVVHTLYLN-PNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQ 83 (238)
Q Consensus 5 ~~l~~v~~ai~~ly~~-~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ 83 (238)
-++++|++|++..|+| +|++.|++|++||++||++|++|..|..+|.+. +..++++||||+++|++
T Consensus 3 m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~-------------~~~~~~vr~fa~~~L~~ 69 (980)
T 3ibv_A 3 MSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEK-------------TKYKPSTRLICLQTLSE 69 (980)
T ss_dssp CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCT-------------TTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCC-------------CCCCHHHHHHHHHHHHH
Confidence 4689999999755554 699999999999999999999999999999870 12389999999999999
Q ss_pred HhhcccCCCChh----hHHHHHHHHHHHHHHhcc-CCchhHHHHHHHHHHHHHhcc-C-CCchHHHHHHHHhCcc-c--c
Q psy13058 84 KVQNAFFELPSE----SHVSLRDSLIEHLCRTND-TSGKNIITQLALALADLALQM-S-AWEKPVVYIIEKLSHK-G--S 153 (238)
Q Consensus 84 ki~~~~~~l~~~----~~~~lr~~Ll~~l~~~~~-~~~~~v~~kL~~~la~l~~~~-~-~W~~~i~~l~~~~~~~-~--~ 153 (238)
||+ .++++ ++..||++|++++..... +.|++|+||+|.+++.++.+. | .||+++.+++..++++ . .
T Consensus 70 ~I~----~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~ 145 (980)
T 3ibv_A 70 KVR----EWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEF 145 (980)
T ss_dssp HHH----HCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHH
T ss_pred HHH----hCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHH
Confidence 999 78999 999999999999987542 335799999999999999986 4 6999999999999764 2 3
Q ss_pred hHHHHHHHhhhHhhhhcccC--C---hhhHHHHHHHHHHh-----hhHHHHHHHHHHhccCCCHHHHHHHHHHhhhcc--
Q psy13058 154 ILALLEVLTVLPEEVNVLKL--G---KNRREEFEEELKAA-----GPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWS-- 221 (238)
Q Consensus 154 ~~~~L~iL~~l~eEv~~~~l--~---~~rr~~l~~~l~~~-----~~~vl~~L~~~l~~~~~~~~~~~~~l~c~~sWi-- 221 (238)
...+|.+|..|+||+.+..+ + ..|++.+++.|+++ .+.++.+|.++.+. .+.++...+|+|+.+|+
T Consensus 146 ~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~--~~~~l~~~~L~~l~s~i~w 223 (980)
T 3ibv_A 146 SNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNA--KNYGTVGLCLQVYAQWVSW 223 (980)
T ss_dssp HHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHhh
Confidence 45667777777799988433 2 24667889999987 67777777776553 35678899999999888
Q ss_pred --------------------CchhHHHHHHHHHhhcC
Q psy13058 222 --------------------SGSLHDAATDCVSALHR 238 (238)
Q Consensus 222 --------------------~~~l~~~a~~~l~e~~~ 238 (238)
.+++|++|+|||++|++
T Consensus 224 i~~~~i~~~~ll~~l~~~L~~~~~r~~A~ecL~ei~~ 260 (980)
T 3ibv_A 224 ININLIVNEPCMNLLYSFLQIEELRCAACETMTEIVN 260 (980)
T ss_dssp SCHHHHHCHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred cCHHhhhcchHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 68999999999999873
No 5
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.96 E-value=9.8e-30 Score=251.07 Aligned_cols=218 Identities=21% Similarity=0.399 Sum_probs=173.8
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHH
Q psy13058 1 MESQPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQT 80 (238)
Q Consensus 1 m~~~~~l~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqt 80 (238)
|++ .++++|+++++++|+ +|++.|++|++||++||++|++|..|..||.. +.++++|||||++
T Consensus 1 m~~-~d~~~l~~~l~~~~~-~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~---------------~~~~~vr~~aa~~ 63 (971)
T 2x1g_F 1 MEP-IDIARLEEAVVSFYR-SNSQNQAITHEWLTDAEASPQAWQFSWQLMQL---------------GKSQEVQFFGAIT 63 (971)
T ss_dssp -----------CTHHHHHT-STTTC----CHHHHHTTTSTHHHHHHHHHTCT---------------TSCHHHHHHHHHH
T ss_pred CCh-hhHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhc---------------CCcHHHHHHHHHH
Confidence 443 789999999999886 57889999999999999999999999999987 5789999999999
Q ss_pred HHHHhhcccCCCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccC-CCchHHHHHHHHhCc-------c-
Q psy13058 81 MRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMS-AWEKPVVYIIEKLSH-------K- 151 (238)
Q Consensus 81 L~~ki~~~~~~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~-~W~~~i~~l~~~~~~-------~- 151 (238)
|++||+++|..++++++..+|++|++++.....+ +++|++|+|.+++.++.+.. .||+++.+++..+++ +
T Consensus 64 L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~-~~~vr~kl~~~la~i~~~~~p~Wp~~l~~l~~~~~~~~~~~~~~~ 142 (971)
T 2x1g_F 64 LHSKLMKHWHEVPPENREELKQKILESIVRFAGG-PKIVLNRLCISLGAYIVHMLGEWPGAIEEVINTFQNQRMPNVSAD 142 (971)
T ss_dssp HHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHTTCC------HHHHHHHHTC----CHH
T ss_pred HHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHhccccccCCCH
Confidence 9999999999999999999999999999877644 47999999999999999877 899999999999875 2
Q ss_pred cchHHHHHHHhhhHhhhhcccCChhhHHHHHHHHHHhhhHHHHHHHHHHhccCCC------HHHHHHHHHHhhhccC---
Q psy13058 152 GSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDN------VSLQTKVLKCFTSWSS--- 222 (238)
Q Consensus 152 ~~~~~~L~iL~~l~eEv~~~~l~~~rr~~l~~~l~~~~~~vl~~L~~~l~~~~~~------~~~~~~~l~c~~sWi~--- 222 (238)
.....++++|+.++||+...+ +..||..+++.+..+.+.|++++.++++....+ .++...+++|+.+|+.
T Consensus 143 ~~~~~~l~iL~~l~EEi~~~~-~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ 221 (971)
T 2x1g_F 143 VQLWIMLEVLTAIPEEAQVIH-TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIG 221 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhHHHHhccC-cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCC
Confidence 467899999999999987644 557888999999999999999999998764322 2789999999998652
Q ss_pred ------------------------------------chhHHHHHHHHHhhc
Q psy13058 223 ------------------------------------GSLHDAATDCVSALH 237 (238)
Q Consensus 223 ------------------------------------~~l~~~a~~~l~e~~ 237 (238)
+++|++|++|+++++
T Consensus 222 ip~~~~~~ll~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~ 272 (971)
T 2x1g_F 222 YTIEGCVTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNII 272 (971)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCccccccHHHHHHhhhhhhccccccccccccCcCCcHHHHHHHHHHHHHH
Confidence 456889999999986
No 6
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.95 E-value=8.7e-27 Score=232.32 Aligned_cols=217 Identities=16% Similarity=0.278 Sum_probs=190.0
Q ss_pred CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHH
Q psy13058 4 QPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQ 83 (238)
Q Consensus 4 ~~~l~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ 83 (238)
+.++++++++++.+|+| +++.|++|++||++|+++|++|..|..+|.+ +.++++||||+++|++
T Consensus 12 ~~~~~~l~~~l~~~~~p-~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~---------------s~~~~vr~~aa~~Lk~ 75 (1049)
T 3m1i_C 12 DLDIALLDQVVSTFYQG-SGVQQKQAQEILTKFQDNPDAWQKADQILQF---------------STNPQSKFIALSILDK 75 (1049)
T ss_dssp CCCHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSTTGGGGHHHHHHH---------------CSCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHhCchHHHHHHHHHhh---------------CCCHHHHHHHHHHHHH
Confidence 46899999999999976 4568999999999999999999999999987 5799999999999999
Q ss_pred HhhcccCCCChhhHHHHHHHHHHHHHHhccCC-----chhHHHHHHHHHHHHHhcc-C-CCchHHHHHHHHhCcc-cchH
Q psy13058 84 KVQNAFFELPSESHVSLRDSLIEHLCRTNDTS-----GKNIITQLALALADLALQM-S-AWEKPVVYIIEKLSHK-GSIL 155 (238)
Q Consensus 84 ki~~~~~~l~~~~~~~lr~~Ll~~l~~~~~~~-----~~~v~~kL~~~la~l~~~~-~-~W~~~i~~l~~~~~~~-~~~~ 155 (238)
+|+++|..++++++..||+.|++++.....++ +++|++|+|.+++.++.+. + .||+++.+++..++++ ....
T Consensus 76 ~i~~~W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~~~~~~~ 155 (1049)
T 3m1i_C 76 LITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCE 155 (1049)
T ss_dssp HHHHTGGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTTCHHHHH
T ss_pred HHHhhCccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHccChHHHH
Confidence 99999999999999999999999997765333 2699999999999999984 5 5999999999999754 3568
Q ss_pred HHHHHHhhhHhhhhcc---cCChhhHHHHHHHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHhhhcc-----------
Q psy13058 156 ALLEVLTVLPEEVNVL---KLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWS----------- 221 (238)
Q Consensus 156 ~~L~iL~~l~eEv~~~---~l~~~rr~~l~~~l~~~~~~vl~~L~~~l~~~~~~~~~~~~~l~c~~sWi----------- 221 (238)
..+.+|+.++||+.+. ..+..||..+++.++...+.++.++.++++..+ +.++...+|+|+.+|+
T Consensus 156 ~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~-~~~~~~~aL~~l~~~l~wi~~~~~~~~ 234 (1049)
T 3m1i_C 156 NNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGS-SSSLIVATLESLLRYLHWIPYRYIYET 234 (1049)
T ss_dssp HHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTTSCTHHHHSS
T ss_pred HHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhhCCHHHHhhh
Confidence 8999999999999873 345677888999999999999999999998753 5678899999998755
Q ss_pred ------------CchhHHHHHHHHHhhc
Q psy13058 222 ------------SGSLHDAATDCVSALH 237 (238)
Q Consensus 222 ------------~~~l~~~a~~~l~e~~ 237 (238)
.++++++|++|+++++
T Consensus 235 ~ll~~l~~~~l~~~~~~~~a~~~L~~i~ 262 (1049)
T 3m1i_C 235 NILELLSTKFMTSPDTRAITLKCLTEVS 262 (1049)
T ss_dssp SHHHHHHTHHHHSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCCHhHHHHHHHHHHHHH
Confidence 2678899999999986
No 7
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.94 E-value=5.2e-26 Score=229.65 Aligned_cols=220 Identities=13% Similarity=0.162 Sum_probs=186.8
Q ss_pred CCHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHH
Q psy13058 5 PSLDTVYAVVHTLYLN-PNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQ 83 (238)
Q Consensus 5 ~~l~~v~~ai~~ly~~-~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ 83 (238)
..+++|+++++.+|+| +|++.|++|+++|++|+++|++|..+..+|.. .+.++++||||+++|++
T Consensus 8 ~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~--------------~s~~~~vR~~A~~~Lk~ 73 (1204)
T 3a6p_A 8 ALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAE--------------KTQVAIVRHFGLQILEH 73 (1204)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTS--------------TTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHc--------------cCCCHHHHHHHHHHHHH
Confidence 3578899999999987 68889999999999999999999999998873 26789999999999999
Q ss_pred HhhcccCCCChhhHHHHHHHHHHHHHHhccC---CchhHHHHHHHHHHHHHhcc-C-CCchHHHHHHHHhCcc-cchHHH
Q psy13058 84 KVQNAFFELPSESHVSLRDSLIEHLCRTNDT---SGKNIITQLALALADLALQM-S-AWEKPVVYIIEKLSHK-GSILAL 157 (238)
Q Consensus 84 ki~~~~~~l~~~~~~~lr~~Ll~~l~~~~~~---~~~~v~~kL~~~la~l~~~~-~-~W~~~i~~l~~~~~~~-~~~~~~ 157 (238)
+|+++|..++++++..||+.+++++.....+ .+++|++|+|.+++.++.+. + .||+++.++++.++++ .+...+
T Consensus 74 ~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~~~~~~e~~ 153 (1204)
T 3a6p_A 74 VVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQGETQTELV 153 (1204)
T ss_dssp HHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999999999999999999765321 35799999999999999975 4 6999999999988765 457899
Q ss_pred HHHHhhhHhhhhcc-cCChhhHHHHHHHHHHhhhHHHHHHHHHHhcc-----------C------CCHHHHHHHHHHhhh
Q psy13058 158 LEVLTVLPEEVNVL-KLGKNRREEFEEELKAAGPIVIEFLKTCQANC-----------G------DNVSLQTKVLKCFTS 219 (238)
Q Consensus 158 L~iL~~l~eEv~~~-~l~~~rr~~l~~~l~~~~~~vl~~L~~~l~~~-----------~------~~~~~~~~~l~c~~s 219 (238)
|.+|..|+||+.+. .....||+.+++.|+++++.++.++..+++.. + .+..+...+|+|+.+
T Consensus 154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence 99999999998773 33457888899999999999999988887641 0 123577889999886
Q ss_pred cc------------------------CchhHHHHHHHHHhhcC
Q psy13058 220 WS------------------------SGSLHDAATDCVSALHR 238 (238)
Q Consensus 220 Wi------------------------~~~l~~~a~~~l~e~~~ 238 (238)
|+ .++++++|++||++|+.
T Consensus 234 ~l~Wi~~~~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s 276 (1204)
T 3a6p_A 234 YIDWVSMSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVS 276 (1204)
T ss_dssp TTTTSCHHHHHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHT
T ss_pred HHhccCHHHHHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 65 36789999999999873
No 8
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.68 E-value=2.9e-15 Score=147.98 Aligned_cols=172 Identities=15% Similarity=0.151 Sum_probs=140.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhh
Q psy13058 7 LDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQ 86 (238)
Q Consensus 7 l~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~ 86 (238)
+++|.+++.... ++|++.| |+++|++++++|+.|..+..++.+ .+.+.++|+||+.+|+++|+
T Consensus 4 ~~~l~~~L~~~~-spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~--------------~~~~~~vR~~A~i~lkn~i~ 66 (960)
T 1wa5_C 4 LETVAKFLAESV-IASTAKT--SERNLRQLETQDGFGLTLLHVIAS--------------TNLPLSTRLAGALFFKNFIK 66 (960)
T ss_dssp HHHHHHHHHHTT-SGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHC--------------TTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCCHHHH--HHHHHHHhhcCCCHHHHHHHHHhc--------------CCCCHHHHHHHHHHHHHHHH
Confidence 788888888755 4466666 999999999999999999999976 25678999999999999999
Q ss_pred cccC------CCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhc-cC-CCchHHHHHHHHhCcc--cchHH
Q psy13058 87 NAFF------ELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQ-MS-AWEKPVVYIIEKLSHK--GSILA 156 (238)
Q Consensus 87 ~~~~------~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~-~~-~W~~~i~~l~~~~~~~--~~~~~ 156 (238)
++|. .++++++..||+.|++.+.. .+ +.|++++|.+++.++.+ ++ .||+.++++++.++++ .....
T Consensus 67 ~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~---~~-~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~ 142 (960)
T 1wa5_C 67 RKWVDENGNHLLPANNVELIKKEIVPLMIS---LP-NNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKG 142 (960)
T ss_dssp HHSBCSSSCBSSCHHHHHHHHHHHHHHHHH---SC-HHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHH
T ss_pred hcCCCcccCCCCCHHHHHHHHHHHHHHHHh---CC-HHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHH
Confidence 9998 79999999999999999965 33 69999999999999986 45 5999999999999765 45677
Q ss_pred HHHHHhhhHhhhhcccCChhhHHHHHHHHHHhhhHHHHHHHHH
Q psy13058 157 LLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTC 199 (238)
Q Consensus 157 ~L~iL~~l~eEv~~~~l~~~rr~~l~~~l~~~~~~vl~~L~~~ 199 (238)
.|.+|..+.++....--+++.+..++..+....+.+++++...
T Consensus 143 aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~ 185 (960)
T 1wa5_C 143 VLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTV 185 (960)
T ss_dssp HHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877653311133345567777888888888887665
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.62 E-value=1.2e-14 Score=141.40 Aligned_cols=145 Identities=14% Similarity=0.170 Sum_probs=121.6
Q ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHh
Q psy13058 6 SLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKV 85 (238)
Q Consensus 6 ~l~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki 85 (238)
.++++.+++...++ +|++.|++|+++|.+++++|+.|..+..++.. ..+.++++|++|+..|++.|
T Consensus 11 ~~~~l~~~l~~~~s-~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~-------------~~~~~~~vR~~a~~~Lkn~i 76 (852)
T 4fdd_A 11 GLQQILQLLKESQS-PDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTK-------------LKSEDEPTRSLSGLILKNNV 76 (852)
T ss_dssp HHHHHHHHHHHHTC-SCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHT-------------CTTSCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhC-cCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhc-------------cCCCChHHHHHHHHHHHHHH
Confidence 57777788877665 49999999999999999999999999999984 12578999999999999999
Q ss_pred hcccCCCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccC--CCchHHHHHHHHhCcc--cchHHHHHHH
Q psy13058 86 QNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMS--AWEKPVVYIIEKLSHK--GSILALLEVL 161 (238)
Q Consensus 86 ~~~~~~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~--~W~~~i~~l~~~~~~~--~~~~~~L~iL 161 (238)
+++|..++++.+..+|+.+++.+. ..+ +.|+++++.+++.++...+ .||+.+..++..++++ ......+..|
T Consensus 77 ~~~w~~~~~~~~~~ik~~ll~~l~---~~~-~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L 152 (852)
T 4fdd_A 77 KAHFQNFPNGVTDFIKSECLNNIG---DSS-PLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGAL 152 (852)
T ss_dssp TTSGGGCCHHHHHHHHHHHHTTTT---CSS-HHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred HHccCCCCHHHHHHHHHHHHHHHc---CCC-HHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999999999999999864 233 5899999999999998654 5999999999999875 3445666666
Q ss_pred hhhHhhh
Q psy13058 162 TVLPEEV 168 (238)
Q Consensus 162 ~~l~eEv 168 (238)
..+.++.
T Consensus 153 ~~i~~~~ 159 (852)
T 4fdd_A 153 QKICEDS 159 (852)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666554
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.57 E-value=6.3e-14 Score=135.21 Aligned_cols=185 Identities=12% Similarity=0.178 Sum_probs=143.3
Q ss_pred HHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHH
Q psy13058 7 LDTVYAVVHTL-YLNPNKTEKEKASQWLHQLQKS--IYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQ 83 (238)
Q Consensus 7 l~~v~~ai~~l-y~~~d~~~~~qA~~~L~~fq~s--~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ 83 (238)
..++.+++..+ + ++|++.|++|+++|++++++ |+.|..+..++.+ .+.++++|+||+.+|++
T Consensus 3 ~~~l~~~L~~~~~-s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~--------------~~~~~~vR~~A~~~lk~ 67 (861)
T 2bpt_A 3 TAEFAQLLENSIL-SPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLID--------------ENTKLEGRILAALTLKN 67 (861)
T ss_dssp HHHHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTC--------------TTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccc-CcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhC--------------CCCChHHHHHHHHHHHh
Confidence 36888888887 6 45999999999999999987 9999999999986 24689999999999999
Q ss_pred Hhhcc-----------cCC-CChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhcc-C--CCchHHHHHHHHh
Q psy13058 84 KVQNA-----------FFE-LPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQM-S--AWEKPVVYIIEKL 148 (238)
Q Consensus 84 ki~~~-----------~~~-l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~-~--~W~~~i~~l~~~~ 148 (238)
+|+++ |.. ++++++..+|+.|++.+.. .+ ..++++++.+++.++... + .||+.+..++..+
T Consensus 68 ~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~---~~-~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l 143 (861)
T 2bpt_A 68 ELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVS---IE-PRIANAAAQLIAAIADIELPHGAWPELMKIMVDNT 143 (861)
T ss_dssp TTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTC---SS-HHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHT
T ss_pred hccCcChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHCC---Cc-hHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHH
Confidence 99876 465 9999999999999998743 33 478999999999999864 4 6999999999999
Q ss_pred Ccc---cchHHHHHHHhhhHhhhhcccCChhhHHHHHHHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHhhhc
Q psy13058 149 SHK---GSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSW 220 (238)
Q Consensus 149 ~~~---~~~~~~L~iL~~l~eEv~~~~l~~~rr~~l~~~l~~~~~~vl~~L~~~l~~~~~~~~~~~~~l~c~~sW 220 (238)
+++ ......+.+|..+.+++..- . | .+....+.++..+...+.....+.++...+++|+.+|
T Consensus 144 ~~~~~~~~r~~al~~l~~l~~~~~~~-~----~-----~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~ 208 (861)
T 2bpt_A 144 GAEQPENVKRASLLALGYMCESADPQ-S----Q-----ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADS 208 (861)
T ss_dssp STTSCHHHHHHHHHHHHHHHHTSSTT-S----S-----TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHcCChh-h----h-----HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Confidence 764 34577788999998876431 0 0 1223445666666666655322456777777777664
No 11
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.52 E-value=3e-13 Score=121.23 Aligned_cols=180 Identities=8% Similarity=0.133 Sum_probs=134.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhc--ChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhc
Q psy13058 10 VYAVVHTLYLNPNKTEKEKASQWLHQLQK--SIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQN 87 (238)
Q Consensus 10 v~~ai~~ly~~~d~~~~~qA~~~L~~fq~--s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~ 87 (238)
+.+++..++ ++|++.|++|+++|.++++ .|+.|.....++.+ .+.++++|.+|+.+|++++++
T Consensus 3 l~~~L~~~~-s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~--------------~~~~~~vR~~a~~~Lk~~i~~ 67 (462)
T 1ibr_B 3 LITILEKTV-SPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN--------------PGNSQVARVAAGLQIKNSLTS 67 (462)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHc--------------CCCChHHHHHHHHHHHHhccc
Confidence 566777766 4589999999999999998 59999999999987 246899999999999999987
Q ss_pred c-----------cCCCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhcc-C--CCchHHHHHHHHhCcc--
Q psy13058 88 A-----------FFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQM-S--AWEKPVVYIIEKLSHK-- 151 (238)
Q Consensus 88 ~-----------~~~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~-~--~W~~~i~~l~~~~~~~-- 151 (238)
+ |..++++.+..+|+.|++.+.. .++ .+ +++|.+++.++... + .|++.+..++..++++
T Consensus 68 ~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~---~~~-~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~ 142 (462)
T 1ibr_B 68 KDPDIKAQYQQRWLAIDANARREVKNYVLQTLGT---ETY-RP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNS 142 (462)
T ss_dssp SSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTC---CCS-SS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTC
T ss_pred cchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCC---CCc-hh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCC
Confidence 6 5789999999999999988743 333 56 99999999999864 4 5999999999998653
Q ss_pred --cchHHHHHHHhhhHhhhhcccCChhhHHHHHHHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHhhhcc
Q psy13058 152 --GSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWS 221 (238)
Q Consensus 152 --~~~~~~L~iL~~l~eEv~~~~l~~~rr~~l~~~l~~~~~~vl~~L~~~l~~~~~~~~~~~~~l~c~~sWi 221 (238)
......+.+|..++++...- .+....+.++..+...+.....+..+...+++|+.+|+
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~~------------~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~ 202 (462)
T 1ibr_B 143 TEHMKESTLEAIGYICQDIDPE------------QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSL 202 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHSCGG------------GTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhCCch------------hhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 34578899999998876220 01223344555555555543113455566666665543
No 12
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.38 E-value=1.2e-11 Score=119.47 Aligned_cols=181 Identities=8% Similarity=0.145 Sum_probs=135.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhh
Q psy13058 9 TVYAVVHTLYLNPNKTEKEKASQWLHQLQKS--IYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQ 86 (238)
Q Consensus 9 ~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s--~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~ 86 (238)
++.+++..++ ++|++.|++|.++|.+++.+ |+.|..+..++.+ .+.++.+|.+|+.+|++++.
T Consensus 2 ~l~~~L~~~~-s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~--------------~~~~~~vR~~a~~~Lk~~i~ 66 (876)
T 1qgr_A 2 ELITILEKTV-SPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN--------------PGNSQVARVAAGLQIKNSLT 66 (876)
T ss_dssp CHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------TTSCHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhC--------------CCCCHHHHHHHHHHHHHhcc
Confidence 3567777666 45899999999999999988 9999999999987 23578999999999999984
Q ss_pred -----------cccCCCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhcc-C--CCchHHHHHHHHhCcc-
Q psy13058 87 -----------NAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQM-S--AWEKPVVYIIEKLSHK- 151 (238)
Q Consensus 87 -----------~~~~~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~-~--~W~~~i~~l~~~~~~~- 151 (238)
+.|..++++.+..+|+.+++.+.. .++ .+ ++++.+++.++... + .||+.+..++..++++
T Consensus 67 ~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~---~~~-~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~ 141 (876)
T 1qgr_A 67 SKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGT---ETY-RP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPN 141 (876)
T ss_dssp CSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTT---CCS-SS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTT
T ss_pred ccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCC---CcH-HH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCC
Confidence 568999999999999999998743 333 56 99999999998764 3 5999999999988654
Q ss_pred ---cchHHHHHHHhhhHhhhhcccCChhhHHHHHHHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHhhhcc
Q psy13058 152 ---GSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWS 221 (238)
Q Consensus 152 ---~~~~~~L~iL~~l~eEv~~~~l~~~rr~~l~~~l~~~~~~vl~~L~~~l~~~~~~~~~~~~~l~c~~sWi 221 (238)
......+..|..+.+++.. +.+....+.++..+.+.+.....+..+...+++|+..|+
T Consensus 142 ~~~~~r~~al~~l~~l~~~~~~------------~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~ 202 (876)
T 1qgr_A 142 STEHMKESTLEAIGYICQDIDP------------EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSL 202 (876)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCH------------HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHHHhcCH------------hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 2356778888888876521 113344555666665555543113455566666666544
No 13
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.87 E-value=0.021 Score=57.38 Aligned_cols=140 Identities=10% Similarity=0.101 Sum_probs=91.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCh------hhH-HHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHH
Q psy13058 8 DTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSI------YAW-KIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQT 80 (238)
Q Consensus 8 ~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~------~aW-~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqt 80 (238)
.++.+.+..+- ++|++.|.+|...|.+.-+.+ ... .+...++.. -.+.+..+|..|+..
T Consensus 6 ~~l~~lL~~l~-s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~-------------L~d~~~~vR~~A~~~ 71 (1230)
T 1u6g_C 6 YHISNLLEKMT-SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKL-------------LEDKNGEVQNLAVKC 71 (1230)
T ss_dssp HHHHHHHHHTT-CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHH-------------TTCSSHHHHHHHHHH
T ss_pred hHHHHHHHhcC-CCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHH-------------hcCCCHHHHHHHHHH
Confidence 34455555544 579999999988887765433 222 233334443 125788999999999
Q ss_pred HHHHhhcccCCCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccC-C----------CchHHHHHHHHhC
Q psy13058 81 MRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMS-A----------WEKPVVYIIEKLS 149 (238)
Q Consensus 81 L~~ki~~~~~~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~-~----------W~~~i~~l~~~~~ 149 (238)
|...+. .++++....+.+.|++.+. ...+ .+|...+.+|+.++-..+ . |+..+..++..+.
T Consensus 72 L~~l~~----~~~~~~~~~i~~~Ll~~l~---d~~~-~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~ 143 (1230)
T 1u6g_C 72 LGPLVS----KVKEYQVETIVDTLCTNML---SDKE-QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIA 143 (1230)
T ss_dssp HHHHHT----TSCHHHHHHHHHHHHHHTT---CSSS-HHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHS
T ss_pred HHHHHH----hCCHHHHHHHHHHHHHHhc---CCcH-HHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHc
Confidence 987765 3566666666666666542 2333 778889999998886544 2 8889999998887
Q ss_pred c-c--cchHHHHHHHhhhHhhhh
Q psy13058 150 H-K--GSILALLEVLTVLPEEVN 169 (238)
Q Consensus 150 ~-~--~~~~~~L~iL~~l~eEv~ 169 (238)
. . ......+++|..+.+..+
T Consensus 144 ~~~~~~~~~~al~~l~~~~~~~~ 166 (1230)
T 1u6g_C 144 KQEDVSVQLEALDIMADMLSRQG 166 (1230)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCchHHHHHHHHHHHHHHHHhH
Confidence 3 3 344566777776665443
No 14
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=94.02 E-value=3.5 Score=37.96 Aligned_cols=127 Identities=13% Similarity=0.023 Sum_probs=76.0
Q ss_pred hcCCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccCCCChh
Q psy13058 17 LYLNPNKTEKEKASQWLHQLQK-SIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSE 95 (238)
Q Consensus 17 ly~~~d~~~~~qA~~~L~~fq~-s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~~l~~~ 95 (238)
+.+++|...|+-+.-++..+-+ .++--..+..-+.+ + -.+.++.+|-.|..+|..-. +++
T Consensus 57 l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~k----d--------L~~~n~~ir~~AL~~L~~i~-------~~~ 117 (591)
T 2vgl_B 57 CMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVK----D--------CEDPNPLIRALAVRTMGCIR-------VDK 117 (591)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGG----G--------SSSSSHHHHHHHHHHHHTCC-------SGG
T ss_pred HhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHH----H--------cCCCCHHHHHHHHHHHHcCC-------hHH
Confidence 5556678888888888888766 35432322232322 0 12567888888887775322 344
Q ss_pred hHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCC-Cc--hHHHHHHHHhCccc--chHHHHHHHhhhHh
Q psy13058 96 SHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSA-WE--KPVVYIIEKLSHKG--SILALLEVLTVLPE 166 (238)
Q Consensus 96 ~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~-W~--~~i~~l~~~~~~~~--~~~~~L~iL~~l~e 166 (238)
-...+-..+...+ ..+..+||.+.+.++..++-..++ ++ .+++.+...+...+ .....+..|..+.+
T Consensus 118 ~~~~l~~~l~~~L----~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 118 ITEYLCEPLRKCL----KDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISE 189 (591)
T ss_dssp GHHHHHHHHHHHS----SCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc----CCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 4444444444333 222359999999999999987774 55 46777777776541 22334444444444
No 15
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=90.94 E-value=5 Score=35.90 Aligned_cols=110 Identities=11% Similarity=-0.001 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc---ChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHH
Q psy13058 5 PSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQK---SIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTM 81 (238)
Q Consensus 5 ~~l~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~---s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL 81 (238)
.++..+...+..+- ++|+..|..|-+-|..+-. ....|......|... .+.+.+++..++..|
T Consensus 7 ~~~~~i~~l~~~l~-s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~-------------~d~~~~vr~~~~~~L 72 (588)
T 1b3u_A 7 DSLYPIAVLIDELR-NEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT-------------IYDEDEVLLALAEQL 72 (588)
T ss_dssp TSSHHHHHHHHHTT-CSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHT-------------CCCCHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHhh-cccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHh-------------cCCcHHHHHHHHHHH
Confidence 45677777777765 4588899898888876543 235566666666541 245678998888888
Q ss_pred HHHhhcccCCCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccC
Q psy13058 82 RQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMS 135 (238)
Q Consensus 82 ~~ki~~~~~~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~ 135 (238)
...... +.... ....++..|......+...||...+.+|..++-..+
T Consensus 73 ~~~~~~----~~~~~---~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~ 119 (588)
T 1b3u_A 73 GTFTTL----VGGPE---YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHS 119 (588)
T ss_dssp TTCSGG----GTSGG---GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHhc----cCcHH---HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCC
Confidence 632221 11111 122344444333322234788888889888887654
No 16
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=89.45 E-value=15 Score=36.57 Aligned_cols=96 Identities=11% Similarity=0.073 Sum_probs=65.2
Q ss_pred CCchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccC--CCchHHHHHH
Q psy13058 68 ELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMS--AWEKPVVYII 145 (238)
Q Consensus 68 ~~~~~~~ffaaqtL~~ki~~~~~~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~--~W~~~i~~l~ 145 (238)
+.+..+|+-|..-|.+.++++...+++.....+...|++.+. ..+ ..+|+.-+.+|+.++-..+ .++..+..++
T Consensus 17 s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~---d~~-~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll 92 (1230)
T 1u6g_C 17 SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE---DKN-GEVQNLAVKCLGPLVSKVKEYQVETIVDTLC 92 (1230)
T ss_dssp CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT---CSS-HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc---CCC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 578899999999999988887777766666666666766663 233 4788888888888876554 3666777777
Q ss_pred HHhCcc-c-chHHHHHHHhhhHhh
Q psy13058 146 EKLSHK-G-SILALLEVLTVLPEE 167 (238)
Q Consensus 146 ~~~~~~-~-~~~~~L~iL~~l~eE 167 (238)
..+... . ........|..+.+.
T Consensus 93 ~~l~d~~~~vR~~a~~~L~~i~~~ 116 (1230)
T 1u6g_C 93 TNMLSDKEQLRDISSIGLKTVIGE 116 (1230)
T ss_dssp HHTTCSSSHHHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHh
Confidence 777553 1 123344444444443
No 17
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=88.41 E-value=9 Score=31.14 Aligned_cols=170 Identities=13% Similarity=0.116 Sum_probs=99.6
Q ss_pred CCCCHHHHHHHHHHHHH-H-hcCh----------hhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhh
Q psy13058 19 LNPNKTEKEKASQWLHQ-L-QKSI----------YAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQ 86 (238)
Q Consensus 19 ~~~d~~~~~qA~~~L~~-f-q~s~----------~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~ 86 (238)
.+++..+|++|-.-|.. + ...+ +-+......+.+ +.+..++.-|++.|..-..
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~---------------D~n~~v~~~A~~al~~la~ 90 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQK---------------DANIQAVALAAQSVELICD 90 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHH---------------CSCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhcc---------------CCCHHHHHHHHHHHHHHHH
Confidence 46788899999888888 6 3322 223333333322 5678888888888876553
Q ss_pred ccc-CCCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCC------CchHHHHHHHHhCcc--cchHHH
Q psy13058 87 NAF-FELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSA------WEKPVVYIIEKLSHK--GSILAL 157 (238)
Q Consensus 87 ~~~-~~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~------W~~~i~~l~~~~~~~--~~~~~~ 157 (238)
.-- ..+.. ......+-..+..+.... ..|++....++-.++-.... -+..+++++..+++. ......
T Consensus 91 ~l~~~~f~~---~y~~~llp~ll~~l~dkk-~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~a 166 (249)
T 2qk1_A 91 KLKTPGFSK---DYVSLVFTPLLDRTKEKK-PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMEC 166 (249)
T ss_dssp HHCTTTSCH---HHHHHHHHHHHHGGGCCC-HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHH
T ss_pred hcccccccH---HHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHH
Confidence 211 12221 233333333344443332 47889999998888876631 336778888888764 334566
Q ss_pred HHHHhhhHhhhhcccCChhhHHHHHHHHHHhh-hHHHHHHHHHHhccCCCHHHHHHHHHHhhh
Q psy13058 158 LEVLTVLPEEVNVLKLGKNRREEFEEELKAAG-PIVIEFLKTCQANCGDNVSLQTKVLKCFTS 219 (238)
Q Consensus 158 L~iL~~l~eEv~~~~l~~~rr~~l~~~l~~~~-~~vl~~L~~~l~~~~~~~~~~~~~l~c~~s 219 (238)
+.++..+.+..... -+.+.... +.++..|...+.. .+.++...+.+|++.
T Consensus 167 l~~l~~~~~~~~~~----------~~~l~~~l~~~iip~l~~~l~D--~~~~VR~aA~~~l~~ 217 (249)
T 2qk1_A 167 TQLFNASMKEEKDG----------YSTLQRYLKDEVVPIVIQIVND--TQPAIRTIGFESFAI 217 (249)
T ss_dssp HHHHHHHHHHCCSC----------SHHHHHHHTTTHHHHHHHHHTC--SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCc----------chhHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHH
Confidence 67776666643321 01233345 6667777777765 245666666666654
No 18
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=87.03 E-value=9.3 Score=29.80 Aligned_cols=134 Identities=15% Similarity=0.141 Sum_probs=79.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcChh----------hHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHH
Q psy13058 10 VYAVVHTLYLNPNKTEKEKASQWLHQLQKSIY----------AWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQ 79 (238)
Q Consensus 10 v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~~----------aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaq 79 (238)
|...+..|. .++++.+..|-..|..+-.... +.+....+|.+ .+..++..|+.
T Consensus 4 i~~L~~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----------------~~~~v~~~a~~ 66 (252)
T 4hxt_A 4 VEKLVKLLT-STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS----------------TDSEVQKEAAR 66 (252)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----------------SCHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC----------------CCHHHHHHHHH
Confidence 444455444 4568889999999998866543 33444444443 56899999999
Q ss_pred HHHHHhhcccCCCChhhHHHH-HHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCC------CchHHHHHHHHhCcc-
Q psy13058 80 TMRQKVQNAFFELPSESHVSL-RDSLIEHLCRTNDTSGKNIITQLALALADLALQMSA------WEKPVVYIIEKLSHK- 151 (238)
Q Consensus 80 tL~~ki~~~~~~l~~~~~~~l-r~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~------W~~~i~~l~~~~~~~- 151 (238)
.|.+-... +++.+..+ ....+..+...-..+...++...+.+|..+....++ -.+.+..++..+.++
T Consensus 67 ~L~~l~~~-----~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~ 141 (252)
T 4hxt_A 67 ALANIASG-----PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD 141 (252)
T ss_dssp HHHHHTTS-----CHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC
T ss_pred HHHHHHcC-----ChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC
Confidence 99876543 23333333 223455554433333357888999999988754321 124566777777654
Q ss_pred -cchHHHHHHHhhhH
Q psy13058 152 -GSILALLEVLTVLP 165 (238)
Q Consensus 152 -~~~~~~L~iL~~l~ 165 (238)
......+..|..|.
T Consensus 142 ~~~~~~a~~~L~~l~ 156 (252)
T 4hxt_A 142 SEVQKEAARALANIA 156 (252)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 22344444444443
No 19
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=85.91 E-value=6.3 Score=37.69 Aligned_cols=133 Identities=6% Similarity=0.020 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc--ChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHH
Q psy13058 7 LDTVYAVVHTLYLNPNKTEKEKASQWLHQLQK--SIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQK 84 (238)
Q Consensus 7 l~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~--s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~k 84 (238)
.+.|...+-.....+++..|+++-.-+..+-+ .++.|+-....|... -.+.+..++.-|+.+|..-
T Consensus 88 ~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~------------l~~~~~~~r~~al~~L~~i 155 (852)
T 4fdd_A 88 TDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSL------------LDSEDYNTCEGAFGALQKI 155 (852)
T ss_dssp HHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHH------------HSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHH------------HcCCCHHHHHHHHHHHHHH
Confidence 44555555444455677788888887777755 356776555555441 1235677888888777655
Q ss_pred hhcccCCCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccC-----CCchHHHHHHHHhCcc
Q psy13058 85 VQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMS-----AWEKPVVYIIEKLSHK 151 (238)
Q Consensus 85 i~~~~~~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~-----~W~~~i~~l~~~~~~~ 151 (238)
+...-..+..+.....-+.++..+...-..+..-||...+.++..++...+ ..+.++..++..++.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~ 227 (852)
T 4fdd_A 156 CEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDE 227 (852)
T ss_dssp HHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCC
T ss_pred HHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCC
Confidence 543211111001000112333333222222224677777777765543322 1345566666655543
No 20
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=85.56 E-value=19 Score=31.98 Aligned_cols=121 Identities=8% Similarity=-0.003 Sum_probs=70.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCh---hhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhc
Q psy13058 11 YAVVHTLYLNPNKTEKEKASQWLHQLQKSI---YAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQN 87 (238)
Q Consensus 11 ~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~---~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~ 87 (238)
...+..+....++..|..|-+-|..+-..- .-+.....++... ..+.+..+|..|+.++..-..
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l------------~~~~~~~~R~~a~~~l~~~~~- 155 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRL------------AGGDWFTSRTSACGLFSVCYP- 155 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHH------------HTCSSHHHHHHHGGGHHHHTT-
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------------hcCCCcHHHHHHHHHHHHHHH-
Confidence 334444445567788888888888876532 2233333344320 013467788888887765443
Q ss_pred ccCCCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCC---CchHHHHHHHHhCcc
Q psy13058 88 AFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSA---WEKPVVYIIEKLSHK 151 (238)
Q Consensus 88 ~~~~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~---W~~~i~~l~~~~~~~ 151 (238)
.+++.. ++.++..+......+...||...+.+|..++-..+. ++..+..+...++..
T Consensus 156 ---~~~~~~----~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~ 215 (588)
T 1b3u_A 156 ---RVSSAV----KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDE 215 (588)
T ss_dssp ---TSCHHH----HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCS
T ss_pred ---hcCHHH----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCC
Confidence 244433 444555554333333358999999999988866542 355566666666543
No 21
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=85.20 E-value=21 Score=32.02 Aligned_cols=104 Identities=17% Similarity=0.059 Sum_probs=67.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcC---h--------hhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHH
Q psy13058 10 VYAVVHTLYLNPNKTEKEKASQWLHQLQKS---I--------YAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSA 78 (238)
Q Consensus 10 v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s---~--------~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaa 78 (238)
|+..|..++ +.|++.+.+|-.-++++-.. | .+-+....+|.. +.++.+|+-||
T Consensus 59 i~~~v~~l~-s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~---------------~~~~~lq~~Aa 122 (510)
T 3ul1_B 59 VEDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK---------------TDCSPIQFESA 122 (510)
T ss_dssp HHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTC---------------TTCHHHHHHHH
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCC---------------CCCHHHHHHHH
Confidence 455566665 56888888888888876432 2 245555666655 56789999999
Q ss_pred HHHHHHhhcccCCCChhhHHHHHHH-HHHHHHHhccCCchhHHHHHHHHHHHHHhcc
Q psy13058 79 QTMRQKVQNAFFELPSESHVSLRDS-LIEHLCRTNDTSGKNIITQLALALADLALQM 134 (238)
Q Consensus 79 qtL~~ki~~~~~~l~~~~~~~lr~~-Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~ 134 (238)
..|.+-... +++....+.+. .+..|...-..+..-++.+.+.+|..++...
T Consensus 123 ~aL~nias~-----~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~ 174 (510)
T 3ul1_B 123 WALTNIASG-----TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG 174 (510)
T ss_dssp HHHHHHHTS-----CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcC-----CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 999875542 45555544442 4444443333333578889999999887643
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=83.72 E-value=23 Score=31.42 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=73.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCh-----------hhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHH
Q psy13058 8 DTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSI-----------YAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYF 76 (238)
Q Consensus 8 ~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~-----------~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ff 76 (238)
+.+...+..|. +.|+..+..|-..|..+-... .+.+....+|.+ +.++.+++.
T Consensus 74 ~~l~~lv~~L~-s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~---------------~~~~~v~~~ 137 (528)
T 4b8j_A 74 ESLPAMIGGVY-SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTR---------------EDFPQLQFE 137 (528)
T ss_dssp -CHHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTC---------------TTCHHHHHH
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCC---------------CCCHHHHHH
Confidence 34666677665 458889999999998883322 356666666665 345899999
Q ss_pred HHHHHHHHhhcccCCCChhhHHHHHH-HHHHHHHHhccCCchhHHHHHHHHHHHHHhccCCC------chHHHHHHHHh
Q psy13058 77 SAQTMRQKVQNAFFELPSESHVSLRD-SLIEHLCRTNDTSGKNIITQLALALADLALQMSAW------EKPVVYIIEKL 148 (238)
Q Consensus 77 aaqtL~~ki~~~~~~l~~~~~~~lr~-~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~W------~~~i~~l~~~~ 148 (238)
|+..|.+-... +++....+.+ ..+..|...-..+..-++...+.+|..++...+.. .+.+.-++..+
T Consensus 138 A~~~L~~l~~~-----~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL 211 (528)
T 4b8j_A 138 AAWALTNIASG-----TSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQL 211 (528)
T ss_dssp HHHHHHHHHTS-----CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTC
T ss_pred HHHHHHHHhCC-----CHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHH
Confidence 99999876642 2344433332 34444443333333478888888888887543211 12455566666
No 23
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=81.20 E-value=34 Score=31.55 Aligned_cols=168 Identities=14% Similarity=0.058 Sum_probs=88.1
Q ss_pred CCCHHHHHHHHHHHHHHhcC-hhh-HHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccCCCChhhH
Q psy13058 20 NPNKTEKEKASQWLHQLQKS-IYA-WKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESH 97 (238)
Q Consensus 20 ~~d~~~~~qA~~~L~~fq~s-~~a-W~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~~l~~~~~ 97 (238)
++|.+.|+-..-|+..+-+. ++- -.++-.+..+ -.+.++.++-.|+.+|..-. +++-.
T Consensus 81 s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kD-------------L~~~n~~vr~lAL~~L~~i~-------~~~~~ 140 (618)
T 1w63_A 81 SQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKND-------------LNHSTQFVQGLALCTLGCMG-------SSEMC 140 (618)
T ss_dssp SSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-------------HSCSSSHHHHHHHHHHHHHC-------CHHHH
T ss_pred CCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-------------cCCCCHhHHHHHHHHHHhcC-------CHHHH
Confidence 45677788888888877663 442 2223333332 13578888989988886533 22333
Q ss_pred HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCC-CchHHHHHHHHhCccc--chHHHHHHHhhhHhhhhcccCC
Q psy13058 98 VSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSA-WEKPVVYIIEKLSHKG--SILALLEVLTVLPEEVNVLKLG 174 (238)
Q Consensus 98 ~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~-W~~~i~~l~~~~~~~~--~~~~~L~iL~~l~eEv~~~~l~ 174 (238)
..+-..+...+.. .+ .+||++.+.++..++...++ -+.+++.+...+...+ .....+..|..+.+.-
T Consensus 141 ~~l~~~l~~~L~~---~~-~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~------ 210 (618)
T 1w63_A 141 RDLAGEVEKLLKT---SN-SYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERS------ 210 (618)
T ss_dssp HHHHHHHHHHHHS---CC-HHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSH------
T ss_pred HHHHHHHHHHHcC---CC-HHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhC------
Confidence 3333344333322 33 59999999999999987653 2334444444444331 1233344444333210
Q ss_pred hhhHHHHHHHHHHhhhHHHHHHHHHHhcc---------CCCHHHHHHHHHHhhhcc
Q psy13058 175 KNRREEFEEELKAAGPIVIEFLKTCQANC---------GDNVSLQTKVLKCFTSWS 221 (238)
Q Consensus 175 ~~rr~~l~~~l~~~~~~vl~~L~~~l~~~---------~~~~~~~~~~l~c~~sWi 221 (238)
....+.+....|.++.+|....... ..++-....+++++....
T Consensus 211 ----~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~ 262 (618)
T 1w63_A 211 ----PDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILG 262 (618)
T ss_dssp ----HHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHT
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhC
Confidence 1113344455566666666554321 013444555666655544
No 24
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=80.74 E-value=19 Score=28.27 Aligned_cols=92 Identities=11% Similarity=0.091 Sum_probs=56.7
Q ss_pred ChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccCCCChhhHH-HHHHHHHHHHHHhccCCch
Q psy13058 39 SIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHV-SLRDSLIEHLCRTNDTSGK 117 (238)
Q Consensus 39 s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~~l~~~~~~-~lr~~Ll~~l~~~~~~~~~ 117 (238)
.+..|..-..+|.+ .+++++..|+..|+..+.. +++.+. .+....+..|...-..+..
T Consensus 10 ~~~~~~~~~~~L~s----------------~~~~~~~~a~~~L~~~l~~-----~~~~~~~~~~~g~i~~L~~lL~~~~~ 68 (252)
T 4db8_A 10 HGSELPQMTQQLNS----------------DDMQEQLSATRKFSQILSD-----GNEQIQAVIDAGALPALVQLLSSPNE 68 (252)
T ss_dssp TTCSHHHHHHHHHS----------------SCSSHHHHHHHHHHHHHHH-----HHHHHHHHHHTTHHHHHHHGGGCSCH
T ss_pred ccchHHHHHHHHcC----------------CCHHHHHHHHHHHHHHHcC-----CCchHHHHHHcCcHHHHHHHHcCCCH
Confidence 34556677777775 7789999999999877764 222232 3333455555444333334
Q ss_pred hHHHHHHHHHHHHHhccCC------CchHHHHHHHHhCcc
Q psy13058 118 NIITQLALALADLALQMSA------WEKPVVYIIEKLSHK 151 (238)
Q Consensus 118 ~v~~kL~~~la~l~~~~~~------W~~~i~~l~~~~~~~ 151 (238)
-++...+.+|..+....++ -...++-++..+.++
T Consensus 69 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~ 108 (252)
T 4db8_A 69 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP 108 (252)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC
Confidence 7888888888888764331 223566666666554
No 25
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=80.11 E-value=17 Score=27.58 Aligned_cols=173 Identities=14% Similarity=0.143 Sum_probs=97.1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhc-Chhh---------HHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHH
Q psy13058 12 AVVHTLYLNPNKTEKEKASQWLHQLQK-SIYA---------WKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTM 81 (238)
Q Consensus 12 ~ai~~ly~~~d~~~~~qA~~~L~~fq~-s~~a---------W~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL 81 (238)
..+..|..+.|+..+..|-..|..+-. +++. .+....+|.+ .++.++..|+.+|
T Consensus 15 ~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~----------------~~~~v~~~a~~~L 78 (210)
T 4db6_A 15 PQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS----------------PNEQILQEALWAL 78 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----------------SCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC----------------CCHHHHHHHHHHH
Confidence 345556667788999999999999884 4433 3334444443 5789999999999
Q ss_pred HHHhhcccCCCChhhHHHHH-HHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCC------CchHHHHHHHHhCcc--c
Q psy13058 82 RQKVQNAFFELPSESHVSLR-DSLIEHLCRTNDTSGKNIITQLALALADLALQMSA------WEKPVVYIIEKLSHK--G 152 (238)
Q Consensus 82 ~~ki~~~~~~l~~~~~~~lr-~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~------W~~~i~~l~~~~~~~--~ 152 (238)
.+-... +++.+..+. ...+..|...-..+...++...+.+|..+....++ -.+.+..++..+.++ .
T Consensus 79 ~~l~~~-----~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 153 (210)
T 4db6_A 79 SNIASG-----GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 153 (210)
T ss_dssp HHHTTS-----CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHH
T ss_pred HHHhcC-----CcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHH
Confidence 876542 333333333 22344443333332347888999999888764321 123556666666543 2
Q ss_pred chHHHHHHHhhhHhhhhcccCChhhHHHHHHHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHhhh
Q psy13058 153 SILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTS 219 (238)
Q Consensus 153 ~~~~~L~iL~~l~eEv~~~~l~~~rr~~l~~~l~~~~~~vl~~L~~~l~~~~~~~~~~~~~l~c~~s 219 (238)
.....+..|..+... .+.. +..+.+. .++..|...+.. .+..+...++.++..
T Consensus 154 v~~~a~~aL~~l~~~------~~~~----~~~~~~~--g~i~~L~~ll~~--~~~~v~~~a~~aL~~ 206 (210)
T 4db6_A 154 ILQEALWALSNIASG------GNEQ----KQAVKEA--GALEKLEQLQSH--ENEKIQKEAQEALEK 206 (210)
T ss_dssp HHHHHHHHHHHHHTS------CHHH----HHHHHHT--THHHHHHHGGGC--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC------CcHH----HHHHHHC--CCHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 223334444444321 1111 1222222 355566666654 356677777776653
No 26
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=80.11 E-value=25 Score=29.39 Aligned_cols=108 Identities=16% Similarity=0.145 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHhcCC-----------CCHHHHHHHHHHHHHHhcChh---------hHHHHHH-HHHHHhhhhhhhHhhh
Q psy13058 6 SLDTVYAVVHTLYLN-----------PNKTEKEKASQWLHQLQKSIY---------AWKIADE-MLRHIYAWKIADEMLL 64 (238)
Q Consensus 6 ~l~~v~~ai~~ly~~-----------~d~~~~~qA~~~L~~fq~s~~---------aW~~~~~-lL~~~~~~~~~~~~~~ 64 (238)
..+.+.+++..|-++ .+.+.|..|-.-|..+-...+ +++.... +|.
T Consensus 26 ~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~------------- 92 (296)
T 1xqr_A 26 EVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLE------------- 92 (296)
T ss_dssp HHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTT-------------
T ss_pred HHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHc-------------
Confidence 466777888888764 123577778888887776543 3444444 443
Q ss_pred hccCCchHHHHHHHHHHHHHhhcccCCCChhhHHH-HHHHHHHHHHHhcc-CCchhHHHHHHHHHHHHHhcc
Q psy13058 65 HQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVS-LRDSLIEHLCRTND-TSGKNIITQLALALADLALQM 134 (238)
Q Consensus 65 ~~~~~~~~~~ffaaqtL~~ki~~~~~~l~~~~~~~-lr~~Ll~~l~~~~~-~~~~~v~~kL~~~la~l~~~~ 134 (238)
+.++.++-.|+.+|.+-... +++.+.. +....+..|...-. .+...++.+.+-+|+.+....
T Consensus 93 ---s~~~~vr~~Aa~~Lg~ia~~-----n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~ 156 (296)
T 1xqr_A 93 ---AGAAGLRWRAAQLIGTCSQN-----VAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQ 156 (296)
T ss_dssp ---CSSHHHHHHHHHHHHHHHTT-----CHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTC
T ss_pred ---CCCHHHHHHHHHHHHHHHhC-----CHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCC
Confidence 36789999999999876653 3333332 22223333322211 323478999999999887643
No 27
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=77.20 E-value=26 Score=28.04 Aligned_cols=180 Identities=12% Similarity=-0.004 Sum_probs=95.0
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccCC
Q psy13058 12 AVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFE 91 (238)
Q Consensus 12 ~ai~~ly~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~~ 91 (238)
..+..| ..+|+..|..|-..|.++. ++++......+|.+ .++.++..|+..|... ..
T Consensus 27 ~L~~~L-~~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~d----------------~~~~vR~~A~~aL~~l-~~---- 83 (280)
T 1oyz_A 27 ELFRLL-DDHNSLKRISSARVLQLRG-GQDAVRLAIEFCSD----------------KNYIRRDIGAFILGQI-KI---- 83 (280)
T ss_dssp HHHHHT-TCSSHHHHHHHHHHHHHHC-CHHHHHHHHHHHTC----------------SSHHHHHHHHHHHHHS-CC----
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHccC-CchHHHHHHHHHcC----------------CCHHHHHHHHHHHHHh-cc----
Confidence 334444 4568889999999999987 68888888887775 6788999999988532 21
Q ss_pred CChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCC-CchHHHHHHHHhCcc--cchHHHHHHHhhhHhh-
Q psy13058 92 LPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSA-WEKPVVYIIEKLSHK--GSILALLEVLTVLPEE- 167 (238)
Q Consensus 92 l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~-W~~~i~~l~~~~~~~--~~~~~~L~iL~~l~eE- 167 (238)
+++....+-..|.+.+. .... ..|+...+.+|+.+....+. .+..+..++..+.+. .........|..+..+
T Consensus 84 -~~~~~~~l~~~L~~~~~--~d~~-~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~ 159 (280)
T 1oyz_A 84 -CKKCEDNVFNILNNMAL--NDKS-ACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKA 159 (280)
T ss_dssp -CTTTHHHHHHHHHHHHH--HCSC-HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---C
T ss_pred -ccccchHHHHHHHHHHh--cCCC-HHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH
Confidence 12222222222222221 1232 47888888888887644332 334556666666543 1122233333333321
Q ss_pred hhc-----cc-CChhhHHHHHHHHHHh---hhHHHHHHHHHHhccCCCHHHHHHHHHHhhhc
Q psy13058 168 VNV-----LK-LGKNRREEFEEELKAA---GPIVIEFLKTCQANCGDNVSLQTKVLKCFTSW 220 (238)
Q Consensus 168 v~~-----~~-l~~~rr~~l~~~l~~~---~~~vl~~L~~~l~~~~~~~~~~~~~l~c~~sW 220 (238)
... +. -...-|...-..+... .+.++..|...+.. .+..+...++.++...
T Consensus 160 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d--~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 160 TIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQD--KNEEVRIEAIIGLSYR 219 (280)
T ss_dssp CHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTC--SCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcC--CCHHHHHHHHHHHHHh
Confidence 111 00 0111232222333322 45666666666654 2355556666665543
No 28
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=76.85 E-value=22 Score=26.96 Aligned_cols=92 Identities=11% Similarity=0.059 Sum_probs=54.5
Q ss_pred ChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccCCCChhhHHHHH-HHHHHHHHHhccCCch
Q psy13058 39 SIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLR-DSLIEHLCRTNDTSGK 117 (238)
Q Consensus 39 s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~~l~~~~~~~lr-~~Ll~~l~~~~~~~~~ 117 (238)
.+..++....+|.+ .++.++.-|+..|.+-... +++.+..+. ...+..|...-..+..
T Consensus 10 ~~~~~~~l~~LL~s----------------~~~~v~~~a~~~L~~l~~~-----~~~~~~~i~~~g~i~~L~~lL~~~~~ 68 (210)
T 4db6_A 10 HGSELPQMVQQLNS----------------PDQQELQSALRKLSQIASG-----GNEQIQAVIDAGALPALVQLLSSPNE 68 (210)
T ss_dssp ---CHHHHHHHTTC----------------SCHHHHHHHHHHHHHHHTS-----CHHHHHHHHHTTHHHHHHHHTTCSCH
T ss_pred ccchhHHHHHHhcC----------------CCHHHHHHHHHHHHHHHcC-----CHHHHHHHHHcCCHHHHHHHHcCCCH
Confidence 34556666677765 6789999999999876643 334433333 2344545433332234
Q ss_pred hHHHHHHHHHHHHHhccCC------CchHHHHHHHHhCcc
Q psy13058 118 NIITQLALALADLALQMSA------WEKPVVYIIEKLSHK 151 (238)
Q Consensus 118 ~v~~kL~~~la~l~~~~~~------W~~~i~~l~~~~~~~ 151 (238)
.++...+.+|..+.....+ ..+.++-++..+.++
T Consensus 69 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~ 108 (210)
T 4db6_A 69 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP 108 (210)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCC
Confidence 7888888888888754321 233556667766654
No 29
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=76.82 E-value=47 Score=30.72 Aligned_cols=113 Identities=12% Similarity=0.087 Sum_probs=70.5
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccCCCChh
Q psy13058 17 LYLNPNKTEKEKASQWLHQLQKS-IYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSE 95 (238)
Q Consensus 17 ly~~~d~~~~~qA~~~L~~fq~s-~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~~l~~~ 95 (238)
+.+++|.+.|+-+.-|+..+-+. ++--..+...+.+ +- .+.++.++-.|..+|..-. +++
T Consensus 82 l~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~k----Dl--------~~~n~~ir~lALr~L~~i~-------~~e 142 (621)
T 2vgl_A 82 LLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKN----DL--------ASRNPTFMGLALHCIANVG-------SRE 142 (621)
T ss_dssp GGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHH----HH--------HSCCHHHHHHHHHHHHHHC-------CHH
T ss_pred HhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHH----hc--------CCCCHHHHHHHHHHhhccC-------CHH
Confidence 44567888999999999988775 5534444444433 11 2577888999999987542 233
Q ss_pred hHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCC-Cc--hHHHHHHHHhCc
Q psy13058 96 SHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSA-WE--KPVVYIIEKLSH 150 (238)
Q Consensus 96 ~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~-W~--~~i~~l~~~~~~ 150 (238)
-.+.+-..+.+.+.. ..+..+||++.+.++..++-..++ -+ ++++.+...+..
T Consensus 143 ~~~~l~~~v~~~l~~--~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d 198 (621)
T 2vgl_A 143 MAEAFAGEIPKILVA--GDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLND 198 (621)
T ss_dssp HHHHHTTHHHHHHHC--SSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCC
Confidence 333343344333321 222359999999999999986652 22 455555556654
No 30
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=76.31 E-value=23 Score=26.99 Aligned_cols=169 Identities=17% Similarity=0.076 Sum_probs=93.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhccc
Q psy13058 10 VYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAF 89 (238)
Q Consensus 10 v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~ 89 (238)
+...+..| ..+|+..|..|-..|.++.. +++......+|.+ .++.++..|+..|...-
T Consensus 21 ~~~L~~~L-~~~~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~~----------------~~~~vr~~a~~aL~~~~---- 78 (211)
T 3ltm_A 21 VEMYIKNL-QDDSYYVRRAAAYALGKIGD-ERAVEPLIKALKD----------------EDAWVRRAAADALGQIG---- 78 (211)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTC----------------SCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHcC----------------CCHHHHHHHHHHHHhhC----
Confidence 34444444 46789999999999999875 6777777777765 57899999999887532
Q ss_pred CCCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCCCchHHHHHHHHhCcc--cchHHHHHHHhhhHhh
Q psy13058 90 FELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYIIEKLSHK--GSILALLEVLTVLPEE 167 (238)
Q Consensus 90 ~~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~W~~~i~~l~~~~~~~--~~~~~~L~iL~~l~eE 167 (238)
+++... .|+..+ .... ..|+...+.+|+.+. -+..+..++..+.+. ......+..|..+.++
T Consensus 79 ---~~~~~~----~L~~~l---~~~~-~~vr~~a~~aL~~~~-----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 142 (211)
T 3ltm_A 79 ---DERAVE----PLIKAL---KDED-GWVRQSAAVALGQIG-----DERAVEPLIKALKDEDWFVRIAAAFALGEIGDE 142 (211)
T ss_dssp ---CGGGHH----HHHHHT---TCSS-HHHHHHHHHHHHHHC-----CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG
T ss_pred ---CHHHHH----HHHHHH---cCCC-HHHHHHHHHHHHHhC-----cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH
Confidence 122222 222332 2232 478877777777652 244566666666543 1223334444443321
Q ss_pred -hhc-----ccC-ChhhHHHHHHHHHH-hhhHHHHHHHHHHhccCCCHHHHHHHHHHhh
Q psy13058 168 -VNV-----LKL-GKNRREEFEEELKA-AGPIVIEFLKTCQANCGDNVSLQTKVLKCFT 218 (238)
Q Consensus 168 -v~~-----~~l-~~~rr~~l~~~l~~-~~~~vl~~L~~~l~~~~~~~~~~~~~l~c~~ 218 (238)
... +.- ...-|...-..|.. ..+.+...|...++.. +..+...+..++.
T Consensus 143 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~--~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 143 RAVEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETG--TGFARKVAVNYLE 199 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCC--CHHHHHHHHHHHH
Confidence 111 110 11223333333333 3456777777777652 4556666666554
No 31
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=70.82 E-value=62 Score=29.43 Aligned_cols=127 Identities=11% Similarity=0.047 Sum_probs=72.5
Q ss_pred cCCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccCCCChhhH
Q psy13058 18 YLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESH 97 (238)
Q Consensus 18 y~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~~l~~~~~ 97 (238)
.+++|+..|.-|-..|..+. +++.++....-+... -.+.+++||.-|+..+..-.+.+...+
T Consensus 95 L~~~n~~ir~~AL~~L~~i~-~~~~~~~l~~~l~~~------------L~d~~~~VRk~A~~al~~i~~~~p~~~----- 156 (591)
T 2vgl_B 95 CEDPNPLIRALAVRTMGCIR-VDKITEYLCEPLRKC------------LKDEDPYVRKTAAVCVAKLHDINAQMV----- 156 (591)
T ss_dssp SSSSSHHHHHHHHHHHHTCC-SGGGHHHHHHHHHHH------------SSCSCHHHHHHHHHHHHHHHHSSCCCH-----
T ss_pred cCCCCHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHH------------cCCCChHHHHHHHHHHHHHHhhChhhc-----
Confidence 44578888888988888885 677666533333220 125789999999999987776443222
Q ss_pred HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCC--C----chHHHHHHHHhCcc--cchHHHHHHHhhh
Q psy13058 98 VSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSA--W----EKPVVYIIEKLSHK--GSILALLEVLTVL 164 (238)
Q Consensus 98 ~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~--W----~~~i~~l~~~~~~~--~~~~~~L~iL~~l 164 (238)
.. ..++..+...-..+...|+.....+|..+.-..++ + +..+..++..+... .....++++|..+
T Consensus 157 ~~--~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l 229 (591)
T 2vgl_B 157 ED--QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY 229 (591)
T ss_dssp HH--HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS
T ss_pred cc--ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh
Confidence 11 12334443333232247777777777777655442 2 23455566555322 2223445555444
No 32
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=70.27 E-value=40 Score=27.28 Aligned_cols=30 Identities=7% Similarity=0.217 Sum_probs=21.4
Q ss_pred HHHHHHHHhhhcc---CchhHHHHHHHHHhhcC
Q psy13058 209 LQTKVLKCFTSWS---SGSLHDAATDCVSALHR 238 (238)
Q Consensus 209 ~~~~~l~c~~sWi---~~~l~~~a~~~l~e~~~ 238 (238)
....+++.+...+ .+++|++|.++++++.|
T Consensus 180 ~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 180 FLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 3344555555444 78999999999999875
No 33
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=68.00 E-value=65 Score=28.52 Aligned_cols=116 Identities=14% Similarity=0.062 Sum_probs=67.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcC---h--------hhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHH
Q psy13058 10 VYAVVHTLYLNPNKTEKEKASQWLHQLQKS---I--------YAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSA 78 (238)
Q Consensus 10 v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s---~--------~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaa 78 (238)
+...+..|. +.|+..+..|-..|.++-.. + .+.+....+|.+ +.++.+++-|+
T Consensus 89 i~~lv~~L~-s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~---------------~~~~~v~~~A~ 152 (530)
T 1wa5_B 89 LPQMTQQLN-SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE---------------NQPEMLQLEAA 152 (530)
T ss_dssp HHHHHHHHS-CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTST---------------TSCHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCC---------------CCCHHHHHHHH
Confidence 444555554 45788899999999988432 1 233333444433 23789999999
Q ss_pred HHHHHHhhcccCCCChhhHHHH-----HHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCCC------chHHHHHHHH
Q psy13058 79 QTMRQKVQNAFFELPSESHVSL-----RDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAW------EKPVVYIIEK 147 (238)
Q Consensus 79 qtL~~ki~~~~~~l~~~~~~~l-----r~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~W------~~~i~~l~~~ 147 (238)
..|.+-... +++....+ -..|+..+.. ++ .-++...+.+|..++...+.. ...+..++..
T Consensus 153 ~~L~~l~~~-----~~~~~~~~~~~g~i~~Lv~lL~~---~~-~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~l 223 (530)
T 1wa5_B 153 WALTNIASG-----TSAQTKVVVDADAVPLFIQLLYT---GS-VEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 223 (530)
T ss_dssp HHHHHHTTS-----CHHHHHHHHHTTCHHHHHHHHHH---CC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHG
T ss_pred HHHHHHhCC-----CHHHHHHHHHCCCHHHHHHHHcC---CC-HHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHH
Confidence 999876653 23333322 2234444432 33 478888888888887542211 1334555555
Q ss_pred hCc
Q psy13058 148 LSH 150 (238)
Q Consensus 148 ~~~ 150 (238)
+..
T Consensus 224 l~~ 226 (530)
T 1wa5_B 224 FNS 226 (530)
T ss_dssp GGS
T ss_pred hcc
Confidence 544
No 34
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=65.07 E-value=42 Score=25.25 Aligned_cols=171 Identities=16% Similarity=0.075 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhh
Q psy13058 7 LDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQ 86 (238)
Q Consensus 7 l~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~ 86 (238)
.......+..| .++|+..|..|-..|.++.. +++......+|.+ .++.++..|+..|...-
T Consensus 13 ~~~~~~~i~~L-~~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~~----------------~~~~vr~~a~~~L~~~~- 73 (201)
T 3ltj_A 13 PEKVEMYIKNL-QDDSYYVRRAAAYALGKIGD-ERAVEPLIKALKD----------------EDAWVRRAAADALGQIG- 73 (201)
T ss_dssp HHHHHHHHHHT-TCSCHHHHHHHHHHHHHHCC-GGGHHHHHHHTTC----------------SSHHHHHHHHHHHHHHC-
T ss_pred CcchHHHHHHh-cCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHcC----------------CCHHHHHHHHHHHHhhC-
Confidence 44455556555 45789999999999999875 5666666666654 67889999999886432
Q ss_pred cccCCCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCCCchHHHHHHHHhCcc--cchHHHHHHHhhh
Q psy13058 87 NAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYIIEKLSHK--GSILALLEVLTVL 164 (238)
Q Consensus 87 ~~~~~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~W~~~i~~l~~~~~~~--~~~~~~L~iL~~l 164 (238)
+++... .|...+ ... ...|+...+.+|..+. -+..+..++..+.+. ......+..|..+
T Consensus 74 ------~~~~~~----~L~~~l---~d~-~~~vr~~a~~aL~~~~-----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 74 ------DERAVE----PLIKAL---KDE-DGWVRQSAAVALGQIG-----DERAVEPLIKALKDEDWFVRIAAAFALGEI 134 (201)
T ss_dssp ------CGGGHH----HHHHHT---TCS-SHHHHHHHHHHHHHHC-----CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ------CHHHHH----HHHHHH---cCC-CHHHHHHHHHHHHHhC-----cHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 122222 222222 222 2478887777777652 234566666666543 1223334444443
Q ss_pred Hhh-hhc-----ccC-ChhhHHHHHHHHHH-hhhHHHHHHHHHHhccCCCHHHHHHHHHHh
Q psy13058 165 PEE-VNV-----LKL-GKNRREEFEEELKA-AGPIVIEFLKTCQANCGDNVSLQTKVLKCF 217 (238)
Q Consensus 165 ~eE-v~~-----~~l-~~~rr~~l~~~l~~-~~~~vl~~L~~~l~~~~~~~~~~~~~l~c~ 217 (238)
..+ ... +.- ...-|...-..|.. ..+.++..|...+... +..+...+.+.+
T Consensus 135 ~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d~--~~~vr~~A~~aL 193 (201)
T 3ltj_A 135 GDERAVEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETG--TGFARKVAVNYL 193 (201)
T ss_dssp TCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHC--CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCC--CHHHHHHHHHHH
Confidence 321 111 110 11223333333332 3356666666666552 344444444443
No 35
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=64.12 E-value=67 Score=27.26 Aligned_cols=115 Identities=11% Similarity=-0.017 Sum_probs=62.0
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCh----------hhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhh
Q psy13058 17 LYLNPNKTEKEKASQWLHQLQKSI----------YAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQ 86 (238)
Q Consensus 17 ly~~~d~~~~~qA~~~L~~fq~s~----------~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~ 86 (238)
+...+++..|.+|-.-|..+-... ++.+....+|.+ +.+..++.-|+.+|.+-..
T Consensus 115 lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~---------------~~~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 115 LLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK---------------QNRLTMTRNAVWALSNLCR 179 (450)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS---------------CCCHHHHHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC---------------CCCHHHHHHHHHHHHHHhC
Confidence 344567788888888887776643 222333333332 3578899999999987775
Q ss_pred cccCCCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCC------CchHHHHHHHHhCc
Q psy13058 87 NAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSA------WEKPVVYIIEKLSH 150 (238)
Q Consensus 87 ~~~~~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~------W~~~i~~l~~~~~~ 150 (238)
..-..........+-..|++.+. .+. ..++...+.+|..+....++ -...+..++..+.+
T Consensus 180 ~~~~~~~~~~~~~~l~~L~~~l~---~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 245 (450)
T 2jdq_A 180 GKSPPPEFAKVSPCLNVLSWLLF---VSD-TDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH 245 (450)
T ss_dssp CSSSCCCGGGTGGGHHHHHHHTT---CCC-HHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHc---cCC-HHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCC
Confidence 43111111111222223333332 233 46777788888777643211 12345566666654
No 36
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=61.13 E-value=56 Score=25.36 Aligned_cols=97 Identities=13% Similarity=0.125 Sum_probs=60.2
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhc-Chh---------hHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHh
Q psy13058 16 TLYLNPNKTEKEKASQWLHQLQK-SIY---------AWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKV 85 (238)
Q Consensus 16 ~ly~~~d~~~~~qA~~~L~~fq~-s~~---------aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki 85 (238)
.+...+++..+..|-..|..+-. +++ +.+....+|. +.++.++..|+.+|.+-.
T Consensus 61 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~----------------~~~~~v~~~a~~~L~~l~ 124 (252)
T 4db8_A 61 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS----------------SPNEQILQEALWALSNIA 124 (252)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG----------------CSCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc----------------CCCHHHHHHHHHHHHHhh
Confidence 34445568888888888888886 444 3333333333 357889999999998765
Q ss_pred hcccCCCChhh-HHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhc
Q psy13058 86 QNAFFELPSES-HVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQ 133 (238)
Q Consensus 86 ~~~~~~l~~~~-~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~ 133 (238)
.. ++.. ...+....+..|...-..+...++...+.+|..+...
T Consensus 125 ~~-----~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 125 SG-----GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp TS-----CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred cC-----CchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 42 2222 2233333566665444333347888888888888754
No 37
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=57.94 E-value=1.2e+02 Score=28.22 Aligned_cols=110 Identities=11% Similarity=-0.001 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC--h-hhHHHHHHHHHHHhhhhhhhHhhhhccCC-chHHHHHHHHHHH
Q psy13058 7 LDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKS--I-YAWKIADEMLRHIYAWKIADEMLLHQNEL-GLEAVYFSAQTMR 82 (238)
Q Consensus 7 l~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s--~-~aW~~~~~lL~~~~~~~~~~~~~~~~~~~-~~~~~ffaaqtL~ 82 (238)
.+.|...+-......++..|+++-.-|..+-+. | ..|+-....|... -.+. ++.++..|+.++.
T Consensus 93 ~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~------------l~~~~~~~~r~~al~~l~ 160 (861)
T 2bpt_A 93 KNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDN------------TGAEQPENVKRASLLALG 160 (861)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHH------------TSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHH------------HhcCCCHHHHHHHHHHHH
Confidence 344444444334455677788888888877654 3 3787666666551 1123 6788888888887
Q ss_pred HHhhcccC-CC--ChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHH
Q psy13058 83 QKVQNAFF-EL--PSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLA 131 (238)
Q Consensus 83 ~ki~~~~~-~l--~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~ 131 (238)
.-... +. .. -......+-..++..+.. ..+...|+.....++..+.
T Consensus 161 ~l~~~-~~~~~~~~~~~~~~ll~~l~~~l~~--~~~~~~vr~~al~~l~~~~ 209 (861)
T 2bpt_A 161 YMCES-ADPQSQALVSSSNNILIAIVQGAQS--TETSKAVRLAALNALADSL 209 (861)
T ss_dssp HHHHT-SSTTSSTTGGGHHHHHHHHHHHHST--TCCCHHHHHHHHHHHHHHG
T ss_pred HHHHc-CChhhhHHHHHHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHHHH
Confidence 66553 32 11 112333444444333321 1112468888888877764
No 38
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=53.56 E-value=73 Score=24.38 Aligned_cols=168 Identities=13% Similarity=0.124 Sum_probs=93.0
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcC-hh---------hHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhh
Q psy13058 17 LYLNPNKTEKEKASQWLHQLQKS-IY---------AWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQ 86 (238)
Q Consensus 17 ly~~~d~~~~~qA~~~L~~fq~s-~~---------aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~ 86 (238)
+...++++.+..|-.-|..+-.. ++ +.+....+|. +.++.++..|+.+|.+-..
T Consensus 52 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~----------------~~~~~v~~~a~~~L~~l~~ 115 (252)
T 4hxt_A 52 LLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT----------------STDSEVQKEAARALANIAS 115 (252)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT----------------CSSHHHHHHHHHHHHHHTT
T ss_pred HHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHc----------------CCCHHHHHHHHHHHHHHHc
Confidence 34455677888888888888775 33 2333333333 3678899999999987664
Q ss_pred cccCCCChhhHHHHH-HHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCCC------chHHHHHHHHhCcc--cchHHH
Q psy13058 87 NAFFELPSESHVSLR-DSLIEHLCRTNDTSGKNIITQLALALADLALQMSAW------EKPVVYIIEKLSHK--GSILAL 157 (238)
Q Consensus 87 ~~~~~l~~~~~~~lr-~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~W------~~~i~~l~~~~~~~--~~~~~~ 157 (238)
. +++.+..+. ...+..|...-..+...++...+.+|..+....+.. ...+..++..+.++ ......
T Consensus 116 ~-----~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 190 (252)
T 4hxt_A 116 G-----PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEA 190 (252)
T ss_dssp S-----CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred C-----CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHH
Confidence 2 333333333 235555544433333478888898998887643211 23556666666543 222333
Q ss_pred HHHHhhhHhhhhcccCChhhHHHHHHHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHhhh
Q psy13058 158 LEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTS 219 (238)
Q Consensus 158 L~iL~~l~eEv~~~~l~~~rr~~l~~~l~~~~~~vl~~L~~~l~~~~~~~~~~~~~l~c~~s 219 (238)
+..|..+... .+.. ++.+.+ ..++..|...+.. .+..+...++.++..
T Consensus 191 ~~~L~~l~~~------~~~~----~~~l~~--~~~i~~L~~ll~~--~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 191 ARALANIASG------PTSA----IKAIVD--AGGVEVLQKLLTS--TDSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHTTS------BHHH----HHHHHH--TTHHHHHHHGGGC--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC------CHHH----HHHHHH--CCCHHHHHHHHCC--CcHHHHHHHHHHHHH
Confidence 4444444321 1111 122222 2455666666664 345677777777654
No 39
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=50.76 E-value=1.5e+02 Score=27.06 Aligned_cols=120 Identities=11% Similarity=0.083 Sum_probs=68.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcChhh---------HHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHH
Q psy13058 10 VYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYA---------WKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQT 80 (238)
Q Consensus 10 v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~~a---------W~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqt 80 (238)
+...+..|.++.+++.+..|-..|..+-..++. .+....+|. +.++.+++.|+.+
T Consensus 58 i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~----------------~~~~~v~~~A~~a 121 (644)
T 2z6h_A 58 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG----------------SPVDSVLFYAITT 121 (644)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTT----------------CSSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHh----------------CCCHHHHHHHHHH
Confidence 445555666556888888888888888776552 222223332 3568999999999
Q ss_pred HHHHhhcccCCCChhhHHHH-HHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCC------CchHHHHHHHHhCc
Q psy13058 81 MRQKVQNAFFELPSESHVSL-RDSLIEHLCRTNDTSGKNIITQLALALADLALQMSA------WEKPVVYIIEKLSH 150 (238)
Q Consensus 81 L~~ki~~~~~~l~~~~~~~l-r~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~------W~~~i~~l~~~~~~ 150 (238)
|.+-...+ ++.+..+ ....+..|...-..+..-++...+.+|..++....+ =...+.-++..+.+
T Consensus 122 L~nL~~~~-----~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~ 193 (644)
T 2z6h_A 122 LHNLLLHQ-----EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 193 (644)
T ss_dssp HHHHHHHS-----TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTT
T ss_pred HHHHHhCc-----chhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHc
Confidence 99877642 2333333 344555554443322224555556677766653211 11345555555554
No 40
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=50.14 E-value=1.3e+02 Score=26.40 Aligned_cols=124 Identities=8% Similarity=0.042 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHHHHHhcC----------hhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccC
Q psy13058 21 PNKTEKEKASQWLHQLQKS----------IYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFF 90 (238)
Q Consensus 21 ~d~~~~~qA~~~L~~fq~s----------~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~ 90 (238)
.++..+..|-..|..+-.. ..+.+....+|.+ .++.++..|+.+|.+-...
T Consensus 143 ~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~----------------~~~~vr~~A~~aL~~l~~~--- 203 (530)
T 1wa5_B 143 QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT----------------GSVEVKEQAIWALGNVAGD--- 203 (530)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH----------------CCHHHHHHHHHHHHHHHTT---
T ss_pred CCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcC----------------CCHHHHHHHHHHHHHHhCC---
Confidence 3677888888888877663 2344455555554 5788999999999876642
Q ss_pred CCChhhHHHH-HHHHHHHHHHhccCCchhHHHHHHHHHHHHHhcc-CC-----CchHHHHHHHHhCcc--cchHHHHHHH
Q psy13058 91 ELPSESHVSL-RDSLIEHLCRTNDTSGKNIITQLALALADLALQM-SA-----WEKPVVYIIEKLSHK--GSILALLEVL 161 (238)
Q Consensus 91 ~l~~~~~~~l-r~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~-~~-----W~~~i~~l~~~~~~~--~~~~~~L~iL 161 (238)
+++.+..+ ...++..|......+...++...+.+|+.+.... +. -...+.-++..+.++ ......+..|
T Consensus 204 --~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L 281 (530)
T 1wa5_B 204 --STDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAI 281 (530)
T ss_dssp --CHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred --CccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 22333222 2234444433322233478888889998888654 21 124566677777654 1223334444
Q ss_pred hhhH
Q psy13058 162 TVLP 165 (238)
Q Consensus 162 ~~l~ 165 (238)
..|.
T Consensus 282 ~~L~ 285 (530)
T 1wa5_B 282 SYLS 285 (530)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4444
No 41
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=49.46 E-value=1.4e+02 Score=26.47 Aligned_cols=104 Identities=16% Similarity=0.046 Sum_probs=64.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCh-----------hhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHH
Q psy13058 10 VYAVVHTLYLNPNKTEKEKASQWLHQLQKSI-----------YAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSA 78 (238)
Q Consensus 10 v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~-----------~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaa 78 (238)
+...+..++ +.|++.+.+|-..+.++-... .+-+....+|.. +.++.+++-|+
T Consensus 78 l~~lv~~l~-s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~---------------~~~~~~q~~Aa 141 (529)
T 3tpo_A 78 VEDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK---------------TDCSPIQFESA 141 (529)
T ss_dssp HHHHHHHHT-SSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTC---------------TTCHHHHHHHH
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcC---------------CCCHHHHHHHH
Confidence 455566665 468888888888888764322 223344455554 56789999999
Q ss_pred HHHHHHhhcccCCCChhhHHHH-HHHHHHHHHHhccCCchhHHHHHHHHHHHHHhcc
Q psy13058 79 QTMRQKVQNAFFELPSESHVSL-RDSLIEHLCRTNDTSGKNIITQLALALADLALQM 134 (238)
Q Consensus 79 qtL~~ki~~~~~~l~~~~~~~l-r~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~ 134 (238)
.+|.+-... +++....+ ..-.+..|......+..-++.+.+.+|..++...
T Consensus 142 ~aL~nia~~-----~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~ 193 (529)
T 3tpo_A 142 WALTNIASG-----TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAG 193 (529)
T ss_dssp HHHHHHHTS-----CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcC-----CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 999876543 34443333 3334455544333333478888888888887643
No 42
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=49.27 E-value=1.6e+02 Score=27.06 Aligned_cols=116 Identities=13% Similarity=0.050 Sum_probs=68.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCh---hhHHHHHHHHHHHhhhhhhhHhhhhcc-CCchHHHHHHHHHHHHHhh
Q psy13058 11 YAVVHTLYLNPNKTEKEKASQWLHQLQKSI---YAWKIADEMLRHIYAWKIADEMLLHQN-ELGLEAVYFSAQTMRQKVQ 86 (238)
Q Consensus 11 ~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~---~aW~~~~~lL~~~~~~~~~~~~~~~~~-~~~~~~~ffaaqtL~~ki~ 86 (238)
...+..|..++|++.|-.|-..|..+-... ++-......+-. .-. +.+..++.-+..+|..-+
T Consensus 331 ~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~------------~L~~d~d~~Ir~~aL~lL~~l~- 397 (621)
T 2vgl_A 331 CNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVIN------------ALKTERDVSVRQRAVDLLYAMC- 397 (621)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHH------------HHTTCCCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHH------------HhccCCCHhHHHHHHHHHHHHc-
Confidence 333444444566666767777777765542 222222111110 001 466778888888887654
Q ss_pred cccCCCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCC-CchHHHHHHHHhC
Q psy13058 87 NAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSA-WEKPVVYIIEKLS 149 (238)
Q Consensus 87 ~~~~~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~-W~~~i~~l~~~~~ 149 (238)
+++....+-..|++++.. .. .-++..+..+++.++.+++. ...+++.++..+.
T Consensus 398 ------~~~Nv~~Iv~eL~~yl~~---~d-~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~ 451 (621)
T 2vgl_A 398 ------DRSNAQQIVAEMLSYLET---AD-YSIREEIVLKVAILAEKYAVDYTWYVDTILNLIR 451 (621)
T ss_dssp ------CHHHHHHHHHHHHHHHHH---CC-HHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred ------ChhhHHHHHHHHHHHHHh---cC-HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 345666777777777754 22 46888888899999988774 4445565555554
No 43
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=47.51 E-value=1.8e+02 Score=27.40 Aligned_cols=125 Identities=14% Similarity=0.123 Sum_probs=70.6
Q ss_pred CCCHHHHHHHHHHhc---CCCCH-H-------HH-HHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCch
Q psy13058 4 QPSLDTVYAVVHTLY---LNPNK-T-------EK-EKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGL 71 (238)
Q Consensus 4 ~~~l~~v~~ai~~ly---~~~d~-~-------~~-~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~ 71 (238)
..+.+.|..++++|+ .+.+. + .. .-+..+-..|-+.++.-.....+|+. .+.
T Consensus 73 ~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~----------------~df 136 (651)
T 3grl_A 73 RSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE----------------FDF 136 (651)
T ss_dssp TTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTC----------------CCH
T ss_pred cccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC----------------ccH
Confidence 356777777777774 33211 1 01 11233445666778999999999875 899
Q ss_pred HHHHHHHHHHHHHhhcccCCCChhhHHHHHHH--HHHHHHHhccCCchhHHHHHHHHHHHHHhccC------CCchHHHH
Q psy13058 72 EAVYFSAQTMRQKVQNAFFELPSESHVSLRDS--LIEHLCRTNDTSGKNIITQLALALADLALQMS------AWEKPVVY 143 (238)
Q Consensus 72 ~~~ffaaqtL~~ki~~~~~~l~~~~~~~lr~~--Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~------~W~~~i~~ 143 (238)
++|+++.|.|..-+.++.. +.+..+... =+..|...-..+...|||.-...|..+.-... ...+.|+-
T Consensus 137 ~vR~~alqlL~~L~~~r~~----~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~ 212 (651)
T 3grl_A 137 HVRWPGVKLLTSLLKQLGP----QVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFER 212 (651)
T ss_dssp HHHHHHHHHHHHHHHHSHH----HHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHhcCcH----HHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHH
Confidence 9999999999988875421 112222211 11222222222224788887777777775443 14444554
Q ss_pred HHHHh
Q psy13058 144 IIEKL 148 (238)
Q Consensus 144 l~~~~ 148 (238)
++.-+
T Consensus 213 Lf~Ii 217 (651)
T 3grl_A 213 LLDII 217 (651)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 44
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=47.16 E-value=1.3e+02 Score=25.38 Aligned_cols=118 Identities=12% Similarity=-0.032 Sum_probs=69.2
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcC-h---------hhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHH
Q psy13058 13 VVHTLYLNPNKTEKEKASQWLHQLQKS-I---------YAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMR 82 (238)
Q Consensus 13 ai~~ly~~~d~~~~~qA~~~L~~fq~s-~---------~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~ 82 (238)
.+..|-++.++..|..|-..|..+-.. + ++.+....+|. +.++.++..|+.+|.
T Consensus 69 L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~----------------~~~~~vr~~a~~~L~ 132 (450)
T 2jdq_A 69 FVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLS----------------SEFEDVQEQAVWALG 132 (450)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTT----------------CSCHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHc----------------CCCHHHHHHHHHHHH
Confidence 344444334777788888888777652 2 23333333333 357899999999998
Q ss_pred HHhhcccCCCChhhHHHH-HHHHHHHHHHhcc-CCchhHHHHHHHHHHHHHhcc-CC-----CchHHHHHHHHhCcc
Q psy13058 83 QKVQNAFFELPSESHVSL-RDSLIEHLCRTND-TSGKNIITQLALALADLALQM-SA-----WEKPVVYIIEKLSHK 151 (238)
Q Consensus 83 ~ki~~~~~~l~~~~~~~l-r~~Ll~~l~~~~~-~~~~~v~~kL~~~la~l~~~~-~~-----W~~~i~~l~~~~~~~ 151 (238)
+-... +++.+..+ ...++..+...-. .+...++...+.+|..+.... +. -...++-++..+.++
T Consensus 133 ~l~~~-----~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~ 204 (450)
T 2jdq_A 133 NIAGD-----STMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204 (450)
T ss_dssp HHHTT-----CHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCC
T ss_pred HHccC-----CHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccC
Confidence 66543 22333322 2234444443332 223578888899999888543 21 345677777777654
No 45
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=47.04 E-value=1.2e+02 Score=24.98 Aligned_cols=77 Identities=12% Similarity=0.092 Sum_probs=46.9
Q ss_pred CchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHH-HhccCCchhHHHHHHHHHHHHHhcc----CC-----Cc
Q psy13058 69 LGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLC-RTNDTSGKNIITQLALALADLALQM----SA-----WE 138 (238)
Q Consensus 69 ~~~~~~ffaaqtL~~ki~~~~~~l~~~~~~~lr~~Ll~~l~-~~~~~~~~~v~~kL~~~la~l~~~~----~~-----W~ 138 (238)
.+..-+.=|...|...+.. .++.....-+.++.|+. .+...+ ..|..+....|..++-+. +. -.
T Consensus 58 ~d~k~~~~ale~L~~~l~~-----~~~~~~~~lDll~kw~~lr~~d~N-~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~ 131 (266)
T 2of3_A 58 KDFKQHLAALDSLVRLADT-----SPRSLLSNSDLLLKWCTLRFFETN-PAALIKVLELCKVIVELIRDTETPMSQEEVS 131 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHH-----CHHHHHHTHHHHHHHHHHHTTSCC-HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhh-----ChHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 4555666677777776653 33444444455788875 344343 367778777777776432 11 23
Q ss_pred hHHHHHHHHhCcc
Q psy13058 139 KPVVYIIEKLSHK 151 (238)
Q Consensus 139 ~~i~~l~~~~~~~ 151 (238)
.+++.++..++.+
T Consensus 132 ~~lP~LveKlGd~ 144 (266)
T 2of3_A 132 AFVPYLLLKTGEA 144 (266)
T ss_dssp HHHHHHHHGGGCS
T ss_pred HHHHHHHHHhCCC
Confidence 5678888888765
No 46
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=46.35 E-value=73 Score=22.28 Aligned_cols=51 Identities=14% Similarity=-0.051 Sum_probs=40.9
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHH
Q psy13058 16 TLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQ 83 (238)
Q Consensus 16 ~ly~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ 83 (238)
.+...+|+..|..|-..|.++.. +++......+|.+ .++.||..|+..|..
T Consensus 49 ~~L~d~~~~vR~~A~~aL~~~~~-~~a~~~L~~~L~d----------------~~~~VR~~A~~aL~~ 99 (131)
T 1te4_A 49 ESLSNEDWRIRGAAAWIIGNFQD-ERAVEPLIKLLED----------------DSGFVRSGAARSLEQ 99 (131)
T ss_dssp HGGGCSCHHHHHHHHHHHGGGCS-HHHHHHHHHHHHH----------------CCTHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHcC----------------CCHHHHHHHHHHHHH
Confidence 34456789999999999988874 6777777777766 678999999999874
No 47
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=41.43 E-value=1.2e+02 Score=23.49 Aligned_cols=168 Identities=11% Similarity=0.059 Sum_probs=87.1
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcC-h--------hhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhc
Q psy13058 17 LYLNPNKTEKEKASQWLHQLQKS-I--------YAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQN 87 (238)
Q Consensus 17 ly~~~d~~~~~qA~~~L~~fq~s-~--------~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~ 87 (238)
..++.+...|+.|-.-|..+-.. + +-......++.+ +.+..++--|+.++..-.+.
T Consensus 23 ~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~k---------------d~~~~V~~~a~~~l~~la~~ 87 (242)
T 2qk2_A 23 KLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITK---------------DSNVVLVAMAGKCLALLAKG 87 (242)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHH---------------CSCHHHHHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhcc---------------CCCHHHHHHHHHHHHHHHHH
Confidence 34467888888888777777543 2 112222233322 46778888888888766642
Q ss_pred ccCCCChhhHHHHHHHHHHHH-HHhccCCchhHHHHHHHHHHHHHhccCCCchHHHHHHHHhCcc--cchHHHHHHHhhh
Q psy13058 88 AFFELPSESHVSLRDSLIEHL-CRTNDTSGKNIITQLALALADLALQMSAWEKPVVYIIEKLSHK--GSILALLEVLTVL 164 (238)
Q Consensus 88 ~~~~l~~~~~~~lr~~Ll~~l-~~~~~~~~~~v~~kL~~~la~l~~~~~~W~~~i~~l~~~~~~~--~~~~~~L~iL~~l 164 (238)
+.+.-...+. .++..+ ..+.... ..|+...+.+|..++-..+ -+..++.++..+.+. ......+.++..+
T Consensus 88 ----l~~~~~~~~~-~ilp~ll~~l~d~~-~~vr~~a~~aL~~~~~~~~-~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 88 ----LAKRFSNYAS-ACVPSLLEKFKEKK-PNVVTALREAIDAIYASTS-LEAQQESIVESLSNKNPSVKSETALFIARA 160 (242)
T ss_dssp ----HGGGGHHHHH-HHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ----HhhhHHHHHH-HHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 2222222222 233333 3333333 4899999999998876432 234566666666543 2234445555554
Q ss_pred HhhhhcccCChhhHHHHHHHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHhhh
Q psy13058 165 PEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTS 219 (238)
Q Consensus 165 ~eEv~~~~l~~~rr~~l~~~l~~~~~~vl~~L~~~l~~~~~~~~~~~~~l~c~~s 219 (238)
.+....-. ......+.++..|...++.. +.++...+.+|+..
T Consensus 161 l~~~~~~~-----------~~~~~l~~l~p~l~~~l~D~--~~~VR~~A~~~l~~ 202 (242)
T 2qk2_A 161 LTRTQPTA-----------LNKKLLKLLTTSLVKTLNEP--DPTVRDSSAEALGT 202 (242)
T ss_dssp HTTCCGGG-----------CCHHHHHHHHHHHHHHHTSS--CHHHHHHHHHHHHH
T ss_pred HHHcCCCC-----------ccHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHH
Confidence 33221100 01122345555555565442 34555555555543
No 48
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=39.55 E-value=45 Score=23.46 Aligned_cols=47 Identities=9% Similarity=-0.049 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHH
Q psy13058 19 LNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMR 82 (238)
Q Consensus 19 ~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~ 82 (238)
..+|+..|..|-..|.++. .+++......+|.+ .++.++..|+..|.
T Consensus 83 ~d~~~~VR~~A~~aL~~~~-~~~a~~~L~~~l~d----------------~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 83 EDDSGFVRSGAARSLEQIG-GERVRAAMEKLAET----------------GTGFARKVAVNYLE 129 (131)
T ss_dssp HHCCTHHHHHHHHHHHHHC-SHHHHHHHHHHTTS----------------CCTHHHHHHHHHGG
T ss_pred cCCCHHHHHHHHHHHHHhC-cHHHHHHHHHHHhC----------------CCHHHHHHHHHHHH
Confidence 3567888888888888886 46666666666643 67888888887764
No 49
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=39.01 E-value=2.5e+02 Score=26.42 Aligned_cols=111 Identities=14% Similarity=0.185 Sum_probs=72.0
Q ss_pred CCCHHHHHHHHHHHHHHhc----------ChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhccc
Q psy13058 20 NPNKTEKEKASQWLHQLQK----------SIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAF 89 (238)
Q Consensus 20 ~~d~~~~~qA~~~L~~fq~----------s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~ 89 (238)
..|+..|..|-.-|..+-. .+++......+|.. +.+++++..|+.+|.+ +..+
T Consensus 161 ~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~---------------~~d~~vr~~Aa~aL~~-Ls~~- 223 (780)
T 2z6g_A 161 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN---------------TNDVETARCTSGTLHN-LSHH- 223 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHH---------------CCCHHHHHHHHHHHHH-HHTS-
T ss_pred CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcC---------------CCCHHHHHHHHHHHHH-HhCC-
Confidence 5688888888888888876 34555666666665 4589999999999997 4432
Q ss_pred CCCChhhHHHH-HHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCC------CchHHHHHHHHhCcc
Q psy13058 90 FELPSESHVSL-RDSLIEHLCRTNDTSGKNIITQLALALADLALQMSA------WEKPVVYIIEKLSHK 151 (238)
Q Consensus 90 ~~l~~~~~~~l-r~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~------W~~~i~~l~~~~~~~ 151 (238)
++.+..+ +...+..|..+...+...++...+.+|..+.....+ =...+.-++..+.++
T Consensus 224 ----~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~ 288 (780)
T 2z6g_A 224 ----REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 288 (780)
T ss_dssp ----HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC
T ss_pred ----chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC
Confidence 2223222 223455554443333347888888888888875443 134566777777654
No 50
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=36.76 E-value=2.5e+02 Score=25.62 Aligned_cols=71 Identities=11% Similarity=0.019 Sum_probs=43.6
Q ss_pred CCchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccC-CCchHHHHHHH
Q psy13058 68 ELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMS-AWEKPVVYIIE 146 (238)
Q Consensus 68 ~~~~~~~ffaaqtL~~ki~~~~~~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~-~W~~~i~~l~~ 146 (238)
+.+..++--|..+|..-... +....+-..|++++.. .+ .-++..+..+|+.++.+++ .-..+++.++.
T Consensus 361 d~d~~Ir~~alelL~~l~~~-------~nv~~iv~eL~~~l~~---~d-~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~ 429 (618)
T 1w63_A 361 DLDVSIKRRAMELSFALVNG-------NNIRGMMKELLYFLDS---CE-PEFKADCASGIFLAAEKYAPSKRWHIDTIMR 429 (618)
T ss_dssp SSCHHHHHHHHHHHHHHCCS-------SSTHHHHHHHHHHHHH---CC-HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHccc-------ccHHHHHHHHHHHHHh---CC-HHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 45677777777777655442 2233444555555543 22 4788999999999999875 33334555555
Q ss_pred HhC
Q psy13058 147 KLS 149 (238)
Q Consensus 147 ~~~ 149 (238)
.+.
T Consensus 430 lL~ 432 (618)
T 1w63_A 430 VLT 432 (618)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 51
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=36.70 E-value=1.5e+02 Score=23.27 Aligned_cols=60 Identities=10% Similarity=0.023 Sum_probs=37.6
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHH
Q psy13058 14 VHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQK 84 (238)
Q Consensus 14 i~~ly~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~k 84 (238)
+..+...+++..|..|-.-|.++...+.+......+|.+... .+.++.++..++..|...
T Consensus 59 L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~-----------~d~~~~vr~~a~~aL~~l 118 (280)
T 1oyz_A 59 AIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMAL-----------NDKSACVRATAIESTAQR 118 (280)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHH-----------HCSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHh-----------cCCCHHHHHHHHHHHHHH
Confidence 334445667888888888888888766655544444421000 046777888888877654
No 52
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=36.36 E-value=1.3e+02 Score=22.32 Aligned_cols=96 Identities=18% Similarity=0.090 Sum_probs=63.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccCCCChhhHH
Q psy13058 19 LNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHV 98 (238)
Q Consensus 19 ~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~~l~~~~~~ 98 (238)
..+++..|..|-..|..+. .+++......+|.+ .++.++..|+..|...- +++..
T Consensus 55 ~~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l~d----------------~~~~vr~~a~~aL~~~~-------~~~~~- 109 (201)
T 3ltj_A 55 KDEDAWVRRAAADALGQIG-DERAVEPLIKALKD----------------EDGWVRQSAAVALGQIG-------DERAV- 109 (201)
T ss_dssp TCSSHHHHHHHHHHHHHHC-CGGGHHHHHHHTTC----------------SSHHHHHHHHHHHHHHC-------CGGGH-
T ss_pred cCCCHHHHHHHHHHHHhhC-CHHHHHHHHHHHcC----------------CCHHHHHHHHHHHHHhC-------cHHHH-
Confidence 4568889999999999886 46777777777765 68899999999997532 12222
Q ss_pred HHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCCCchHHHHHHHHhCcc
Q psy13058 99 SLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYIIEKLSHK 151 (238)
Q Consensus 99 ~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~W~~~i~~l~~~~~~~ 151 (238)
..|...+ ..+...|+...+.+|+.+. -+..+..++..+...
T Consensus 110 ---~~L~~~l----~d~~~~vr~~a~~aL~~~~-----~~~~~~~L~~~l~d~ 150 (201)
T 3ltj_A 110 ---EPLIKAL----KDEDWFVRIAAAFALGEIG-----DERAVEPLIKALKDE 150 (201)
T ss_dssp ---HHHHHHT----TCSSHHHHHHHHHHHHHHT-----CGGGHHHHHHHTTCS
T ss_pred ---HHHHHHH----cCCCHHHHHHHHHHHHHhC-----CHHHHHHHHHHHcCC
Confidence 2233333 2223478888888888763 245566667766553
No 53
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=33.36 E-value=1.7e+02 Score=22.67 Aligned_cols=157 Identities=14% Similarity=0.151 Sum_probs=91.7
Q ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhcC------hhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHH
Q psy13058 7 LDTVYAVVHTLYL-NPNKTEKEKASQWLHQLQKS------IYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQ 79 (238)
Q Consensus 7 l~~v~~ai~~ly~-~~d~~~~~qA~~~L~~fq~s------~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaq 79 (238)
..++..++..+.. .+++..+..|-.-|..+-+. +..=.+...|+.. -.+....+|--|..
T Consensus 54 ~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~-------------l~d~~~~vr~~a~~ 120 (242)
T 2qk2_A 54 YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEK-------------FKEKKPNVVTALRE 120 (242)
T ss_dssp CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHG-------------GGCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-------------HcCCCHHHHHHHHH
Confidence 4455556665553 56777777777666666542 2222234444443 12567889988988
Q ss_pred HHHHHhhcccCCCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccC-------CCchHHHHHHHHhCcc-
Q psy13058 80 TMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMS-------AWEKPVVYIIEKLSHK- 151 (238)
Q Consensus 80 tL~~ki~~~~~~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~-------~W~~~i~~l~~~~~~~- 151 (238)
+|..-+.. .+ ...+-..++..+. ..+ ..++...+..|..++..+. .++..+..++..+...
T Consensus 121 aL~~~~~~----~~---~~~ll~~l~~~l~---~~~-~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~ 189 (242)
T 2qk2_A 121 AIDAIYAS----TS---LEAQQESIVESLS---NKN-PSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPD 189 (242)
T ss_dssp HHHHHHTT----SC---HHHHHHHHHHHTT---CSC-HHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHc----CC---HHHHHHHHHHHHc---CCC-hHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCC
Confidence 88877653 22 2233333333332 233 4888888888988775532 2556667777777543
Q ss_pred -----cchHHHHHHHhhhHhh-hhc--ccCChhhHHHHHHHHHH
Q psy13058 152 -----GSILALLEVLTVLPEE-VNV--LKLGKNRREEFEEELKA 187 (238)
Q Consensus 152 -----~~~~~~L~iL~~l~eE-v~~--~~l~~~rr~~l~~~l~~ 187 (238)
....++-.+...+.++ +.. -.+.+.++..+++.+..
T Consensus 190 ~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~ 233 (242)
T 2qk2_A 190 PTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEK 233 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3355566666667666 333 23456677777776654
No 54
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=32.74 E-value=2.2e+02 Score=23.87 Aligned_cols=93 Identities=9% Similarity=0.096 Sum_probs=51.5
Q ss_pred chHHHHHHHHHHHHHhhcccCCCChh-hHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCC-----Cc-hHHH
Q psy13058 70 GLEAVYFSAQTMRQKVQNAFFELPSE-SHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSA-----WE-KPVV 142 (238)
Q Consensus 70 ~~~~~ffaaqtL~~ki~~~~~~l~~~-~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~-----W~-~~i~ 142 (238)
++.+|.-|+.++..-+.. +.+. .....+++++..+......+..-++...+.+|..++-.++. -+ ..+.
T Consensus 187 ~~~vr~~a~~~l~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~ 262 (462)
T 1ibr_B 187 SNNVKLAATNALLNSLEF----TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFA 262 (462)
T ss_dssp CHHHHHHHHHHHHHHTTT----THHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHH
T ss_pred CHHHHHHHHHHHHHHHHH----HHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999988775421 1100 01124555666665444333347888999999998876542 23 4444
Q ss_pred HHHHHhCcc--cchHHHHHHHhhhHh
Q psy13058 143 YIIEKLSHK--GSILALLEVLTVLPE 166 (238)
Q Consensus 143 ~l~~~~~~~--~~~~~~L~iL~~l~e 166 (238)
-++..+... ......++++..+.+
T Consensus 263 ~~~~~~~~~~~~v~~~a~~~l~~~~~ 288 (462)
T 1ibr_B 263 ITIEAMKSDIDEVALQGIEFWSNVCD 288 (462)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 444444332 222344444444443
No 55
>2efe_A Similarity to vacuolar protein sorting-associated VPS9; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_A 2efc_A* 2efh_A*
Probab=31.88 E-value=1.4e+02 Score=24.41 Aligned_cols=84 Identities=11% Similarity=0.031 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHH
Q psy13058 1 MESQPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQT 80 (238)
Q Consensus 1 m~~~~~l~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqt 80 (238)
|++....-+...-++.|-+|......+....|+.+|+..+..-..-..+ ++=|- +-
T Consensus 3 ~~~~~~~~~f~~Fl~~l~~~~a~~~~~~i~~Fi~~f~~~~~~~~e~~~~-----------------------v~~f~-~~ 58 (267)
T 2efe_A 3 MENTDVFLGLHDFLERMRKPSAGDFVKSIKSFIVSFSNNAPDPEKDCAM-----------------------VQEFF-SK 58 (267)
T ss_dssp ----------------CCSGGGHHHHHHHHHHHHTTTTSCCCHHHHHHH-----------------------HHHHH-HH
T ss_pred cccCcchhHHHHHHHHHcccchhHHHHHHHHHHHHHhcCCCChHHHHHH-----------------------HHHHH-HH
Confidence 4333344455555666655555567888889999988764211111111 22232 35
Q ss_pred HHHHhhcc--cCCCChhhHHHHHHHHHHHH
Q psy13058 81 MRQKVQNA--FFELPSESHVSLRDSLIEHL 108 (238)
Q Consensus 81 L~~ki~~~--~~~l~~~~~~~lr~~Ll~~l 108 (238)
+..++..+ |..+++++...+++.+=.++
T Consensus 59 ~~~~l~~~~~~~~~~~~~~~~~~e~iEk~v 88 (267)
T 2efe_A 59 MEAAFRAHPLWSGCSEEELDSAGDGLEKYV 88 (267)
T ss_dssp HHHHHHSCGGGTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcccccCCHHHHHHHHHHHHHHH
Confidence 56666644 88888888766666544444
No 56
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=30.07 E-value=3.5e+02 Score=25.41 Aligned_cols=120 Identities=13% Similarity=0.090 Sum_probs=68.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcChhh---------HHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHH
Q psy13058 10 VYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYA---------WKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQT 80 (238)
Q Consensus 10 v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~~a---------W~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqt 80 (238)
|...+..|.++.|++.|..|-..|..+-..++. .+....+|. +.++.+++.|+.+
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~----------------~~~~~v~~~A~~a 257 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLG----------------SPVDSVLFHAITT 257 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTT----------------CSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHc----------------CCCHHHHHHHHHH
Confidence 334444554455888888888888887666542 233333333 3578999999999
Q ss_pred HHHHhhcccCCCChhhHHHHH-HHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCC------CchHHHHHHHHhCc
Q psy13058 81 MRQKVQNAFFELPSESHVSLR-DSLIEHLCRTNDTSGKNIITQLALALADLALQMSA------WEKPVVYIIEKLSH 150 (238)
Q Consensus 81 L~~ki~~~~~~l~~~~~~~lr-~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~------W~~~i~~l~~~~~~ 150 (238)
|.+-.... ++.+..++ ...+..|...-..+..-++...+.+|..+.....+ =...+..++..+..
T Consensus 258 L~nLa~~~-----~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~ 329 (780)
T 2z6g_A 258 LHNLLLHQ-----EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 329 (780)
T ss_dssp HHHHHHHS-----TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTT
T ss_pred HHHHhCCC-----hhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhc
Confidence 98776542 23344443 33445444333222235666666777766542210 12345666666654
No 57
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=29.13 E-value=2.1e+02 Score=22.62 Aligned_cols=62 Identities=8% Similarity=0.003 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHHHhcC-hhhH-HHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccCCCChhhHH
Q psy13058 21 PNKTEKEKASQWLHQLQKS-IYAW-KIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHV 98 (238)
Q Consensus 21 ~d~~~~~qA~~~L~~fq~s-~~aW-~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~~l~~~~~~ 98 (238)
..|..|+-|-++....... ...| ..+..|... ...+.+++|.-.+..+-+ .++++...
T Consensus 39 r~P~lR~laK~~~k~~~~~~~~~~~~~~~~L~~~----------------~~~E~r~~ai~~l~~~~k----~~~~~~l~ 98 (232)
T 3jxy_A 39 QTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDL----------------PEREFQAAALDIMQKYKK----HINETHIP 98 (232)
T ss_dssp CHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHTS----------------SBHHHHHHHHHHHHHTGG----GCCGGGHH
T ss_pred ChHHHHHHHHHHHHhccccchhhHHHHHHHHhcC----------------cHHHHHHHHHHHHHHHHH----hCCHHHHH
Confidence 3577777788887776554 3468 588888876 457799999998874322 35566665
Q ss_pred HHHH
Q psy13058 99 SLRD 102 (238)
Q Consensus 99 ~lr~ 102 (238)
.+..
T Consensus 99 ~~~~ 102 (232)
T 3jxy_A 99 FLEE 102 (232)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 58
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=27.84 E-value=3e+02 Score=23.92 Aligned_cols=109 Identities=6% Similarity=-0.020 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHHHhcC-hh---------hHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccCC
Q psy13058 22 NKTEKEKASQWLHQLQKS-IY---------AWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFE 91 (238)
Q Consensus 22 d~~~~~qA~~~L~~fq~s-~~---------aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~~ 91 (238)
++..+..|-..|..+-.. ++ +-+....+|. +.++.++..|+.+|.+-...
T Consensus 131 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~----------------~~~~~v~~~a~~aL~~l~~~---- 190 (528)
T 4b8j_A 131 FPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLG----------------SSSDDVREQAVWALGNVAGD---- 190 (528)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT----------------CSCHHHHHHHHHHHHHHHHT----
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhc----------------CCCHHHHHHHHHHHHHHhCC----
Confidence 377777777777777764 33 2222222232 35788999999999866542
Q ss_pred CChhhHHHHHH-HHHHHHHHhc-cCCchhHHHHHHHHHHHHHhccCC-----CchHHHHHHHHhCcc
Q psy13058 92 LPSESHVSLRD-SLIEHLCRTN-DTSGKNIITQLALALADLALQMSA-----WEKPVVYIIEKLSHK 151 (238)
Q Consensus 92 l~~~~~~~lr~-~Ll~~l~~~~-~~~~~~v~~kL~~~la~l~~~~~~-----W~~~i~~l~~~~~~~ 151 (238)
+++.+..+.+ ..+..|.... ..+...++...+.+|+.+....+. -...+.-++..+.++
T Consensus 191 -~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~ 256 (528)
T 4b8j_A 191 -SPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSN 256 (528)
T ss_dssp -CHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC
T ss_pred -ChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCC
Confidence 2333333322 2333333322 233357888899999988865431 244667777777654
No 59
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=27.14 E-value=3.8e+02 Score=24.80 Aligned_cols=64 Identities=14% Similarity=0.138 Sum_probs=33.1
Q ss_pred chHHHHHHHHHHHHHhhccc--------------CCCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccC
Q psy13058 70 GLEAVYFSAQTMRQKVQNAF--------------FELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMS 135 (238)
Q Consensus 70 ~~~~~ffaaqtL~~ki~~~~--------------~~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~ 135 (238)
++.++--++..|..-+..-- ..+.+ -...+-..|+..+.... ...+.++..+..++..++...+
T Consensus 463 ~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~il~~L~~~l~~~~-~~~~~~r~~~~~~l~~l~~~~~ 540 (876)
T 1qgr_A 463 EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSS-SFELIVQKLLETTDRPD-GHQNNLRSSAYESLMEIVKNSA 540 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTT-THHHHHHHHHHHTTSCS-SCSTTHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhH-hHHHHHHHHHHHHhCcC-cchhhHHHHHHHHHHHHHHHCc
Confidence 36677777777765554311 12322 22334444444333221 1124677778888888876654
No 60
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=26.80 E-value=89 Score=24.93 Aligned_cols=17 Identities=35% Similarity=0.600 Sum_probs=13.6
Q ss_pred hHHHHHHHhhhHhhhhc
Q psy13058 154 ILALLEVLTVLPEEVNV 170 (238)
Q Consensus 154 ~~~~L~iL~~l~eEv~~ 170 (238)
...+=.+|..||+|+.+
T Consensus 100 A~~LK~iLSrIPdEI~d 116 (213)
T 3ajm_A 100 ARALKQILSKIPDEIND 116 (213)
T ss_dssp HHHHHHHHHTHHHHTTC
T ss_pred HHHHHHHHHhCchhhcc
Confidence 45677888889999877
No 61
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=24.78 E-value=3.5e+02 Score=23.68 Aligned_cols=79 Identities=11% Similarity=0.102 Sum_probs=42.1
Q ss_pred CCchHHHHHHHHHHHHHhhcccCCCChhhHHHHH-HHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCCC------chH
Q psy13058 68 ELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLR-DSLIEHLCRTNDTSGKNIITQLALALADLALQMSAW------EKP 140 (238)
Q Consensus 68 ~~~~~~~ffaaqtL~~ki~~~~~~l~~~~~~~lr-~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~W------~~~ 140 (238)
+.+..++.-++.+|.+-... +++....+. ...+..|...-..+...++...|.+|+.++....+. .+.
T Consensus 285 ~~~~~v~~~al~aL~nl~~~-----~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~ 359 (510)
T 3ul1_B 285 ATELPIVTPALRAIGNIVTG-----TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359 (510)
T ss_dssp CSCHHHHHHHHHHHHHHTTS-----CHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred CCChhhhhHHHHHHHHhhcC-----CHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCC
Confidence 36678888888888865542 333332222 222233322222233478888888888887643221 134
Q ss_pred HHHHHHHhCcc
Q psy13058 141 VVYIIEKLSHK 151 (238)
Q Consensus 141 i~~l~~~~~~~ 151 (238)
+.-++..+.++
T Consensus 360 i~~Lv~lL~~~ 370 (510)
T 3ul1_B 360 VPFLVGVLSKA 370 (510)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHcCC
Confidence 45555555443
No 62
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=22.51 E-value=3.1e+02 Score=22.21 Aligned_cols=66 Identities=8% Similarity=-0.026 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHh
Q psy13058 6 SLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKV 85 (238)
Q Consensus 6 ~l~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki 85 (238)
+++++......|+....-+.|--|-.-|.++...++.|......+.. +.+-.|+..++..+...+
T Consensus 68 ~~~~~~~la~~L~~~~~deVR~~Av~lLg~~~~~~~~L~~ir~~va~---------------D~~WrVre~lA~a~~~~~ 132 (240)
T 3l9t_A 68 DGEYIKKLAFLAYQSDVYQVRMYAVFLFGYLSKDKEILIFMRDEVSK---------------DNNWRVQEVLAKAFDEFC 132 (240)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTSHHHHHHHHHTGGG---------------CSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCcchHHHHHHHHHHHhccCcHHHHHHHHHHhCC---------------CCCccHHHHHHHHHHHHH
Confidence 35556666666665543345555555555553333444444332222 355566666666666555
Q ss_pred h
Q psy13058 86 Q 86 (238)
Q Consensus 86 ~ 86 (238)
.
T Consensus 133 ~ 133 (240)
T 3l9t_A 133 K 133 (240)
T ss_dssp H
T ss_pred H
Confidence 4
No 63
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=20.48 E-value=5.7e+02 Score=24.48 Aligned_cols=82 Identities=10% Similarity=0.022 Sum_probs=43.4
Q ss_pred HHHHHHHhhhHhhhhcccCChhhHHHHHHHHHHh-hhHHHHHHHHHHhccCCCHHHHHHHHHHhhhcc-----CchhHHH
Q psy13058 155 LALLEVLTVLPEEVNVLKLGKNRREEFEEELKAA-GPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWS-----SGSLHDA 228 (238)
Q Consensus 155 ~~~L~iL~~l~eEv~~~~l~~~rr~~l~~~l~~~-~~~vl~~L~~~l~~~~~~~~~~~~~l~c~~sWi-----~~~l~~~ 228 (238)
.++-.++-++|+-+..+.+++.-...+++.+.+. ...+..-+-..++..-.+......+.+.+..|+ .++.+..
T Consensus 234 ~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~~~ir~l 313 (778)
T 3opb_A 234 KTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNVEDVQIY 313 (778)
T ss_dssp HHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTSGGGHHH
T ss_pred HHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhccHHHHHH
Confidence 3344445556665555555543344444444322 122222222233322245666777788888888 5677777
Q ss_pred HHHHHHhh
Q psy13058 229 ATDCVSAL 236 (238)
Q Consensus 229 a~~~l~e~ 236 (238)
|.-+||.+
T Consensus 314 AavvL~KL 321 (778)
T 3opb_A 314 SALVLVKT 321 (778)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777653
No 64
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=20.40 E-value=2.7e+02 Score=20.65 Aligned_cols=98 Identities=17% Similarity=0.092 Sum_probs=65.2
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccCCCChhh
Q psy13058 17 LYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSES 96 (238)
Q Consensus 17 ly~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~~l~~~~ 96 (238)
+...+|+..|..|-..|.++.. +++......+|.+ .++.++..|+..|..- . .++.
T Consensus 58 ~l~~~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~~----------------~~~~vr~~a~~aL~~~-~------~~~~ 113 (211)
T 3ltm_A 58 ALKDEDAWVRRAAADALGQIGD-ERAVEPLIKALKD----------------EDGWVRQSAAVALGQI-G------DERA 113 (211)
T ss_dssp HTTCSCHHHHHHHHHHHHHHCC-GGGHHHHHHHTTC----------------SSHHHHHHHHHHHHHH-C------CGGG
T ss_pred HHcCCCHHHHHHHHHHHHhhCC-HHHHHHHHHHHcC----------------CCHHHHHHHHHHHHHh-C------cHHH
Confidence 3345688899999999999874 6777777777765 6789999999999743 1 1222
Q ss_pred HHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCCCchHHHHHHHHhCcc
Q psy13058 97 HVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYIIEKLSHK 151 (238)
Q Consensus 97 ~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~W~~~i~~l~~~~~~~ 151 (238)
. ..|...+ ..+...|+...+.+|+.+. -+..+..++..+...
T Consensus 114 ~----~~L~~~l----~d~~~~vr~~a~~aL~~~~-----~~~~~~~L~~~l~d~ 155 (211)
T 3ltm_A 114 V----EPLIKAL----KDEDWFVRIAAAFALGEIG-----DERAVEPLIKALKDE 155 (211)
T ss_dssp H----HHHHHHT----TCSSHHHHHHHHHHHHHHC-----CGGGHHHHHHHTTCS
T ss_pred H----HHHHHHH----hCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHcCC
Confidence 2 2333333 2223478888888887762 345566677777543
No 65
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=20.33 E-value=4.4e+02 Score=23.12 Aligned_cols=79 Identities=11% Similarity=0.102 Sum_probs=44.6
Q ss_pred CCchHHHHHHHHHHHHHhhcccCCCChhhHHHHH-HHHHHHHHHhccCCchhHHHHHHHHHHHHHhccCCC------chH
Q psy13058 68 ELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLR-DSLIEHLCRTNDTSGKNIITQLALALADLALQMSAW------EKP 140 (238)
Q Consensus 68 ~~~~~~~ffaaqtL~~ki~~~~~~l~~~~~~~lr-~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~~~~W------~~~ 140 (238)
+.+..++.-++.+|.+-... +++....+. ...+..|...-..+...++...|.+|+.++...... .+.
T Consensus 304 ~~~~~v~~~a~~aL~nl~~~-----~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~ 378 (529)
T 3tpo_A 304 ATELPIVTPALRAIGNIVTG-----TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 378 (529)
T ss_dssp CSCHHHHHHHHHHHHHHTTS-----CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH
T ss_pred CCChhHHHHHHHHHHHHHcc-----chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCc
Confidence 36778888888888876542 334333332 223344433333333578889999999887643311 134
Q ss_pred HHHHHHHhCcc
Q psy13058 141 VVYIIEKLSHK 151 (238)
Q Consensus 141 i~~l~~~~~~~ 151 (238)
+.-++..+.++
T Consensus 379 i~~Lv~lL~~~ 389 (529)
T 3tpo_A 379 VPFLVGVLSKA 389 (529)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHhcCC
Confidence 45555555443
Done!