RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13058
(238 letters)
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 861
Score = 41.0 bits (94), Expect = 8e-05
Identities = 29/227 (12%), Positives = 79/227 (34%), Gaps = 32/227 (14%)
Query: 6 SLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLH 65
S ++ L+P++ + + L +L + +A + +L
Sbjct: 2 STAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQ----------FAGLSSQ--VLI 49
Query: 66 QNELGLEAVYFSAQTMRQKV------------QNAFFELPSESHVSLRDSLIEHLCRTND 113
LE +A T++ ++ Q ++ E+ ++ + + L + +
Sbjct: 50 DENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTAL-VSIE 108
Query: 114 TSGKNIITQLALALADLALQMSAWEKPVVYIIEKLSHKGSILALLEVLTVLPEEVNVLKL 173
N QL A+AD+ L AW + + +++ + L L +
Sbjct: 109 PRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLAL------GYM 162
Query: 174 GKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSW 220
++ + + + ++ I+I ++ Q+ + +++ L
Sbjct: 163 CESADPQSQALVSSSNNILIAIVQGAQSTE-TSKAVRLAALNALADS 208
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 888
Score = 40.1 bits (92), Expect = 2e-04
Identities = 24/208 (11%), Positives = 62/208 (29%), Gaps = 27/208 (12%)
Query: 2 ESQPSLDTVYAVVHTL--YLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIA 59
E +P + ++ L +P+ T + Q L QL + +L +
Sbjct: 2 EWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKL------ 55
Query: 60 DEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNI 119
S ++ V+ F P+ ++ + ++ ++ I
Sbjct: 56 -------KSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSS----PLI 104
Query: 120 ITQLALALADLA--LQMSAWEKPVVYIIEKLSHK--GSILALLEVLTVLPEEVNVLKLGK 175
+ + + +A ++ W + + L + + L + E+ +
Sbjct: 105 RATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI---- 160
Query: 176 NRREEFEEELKAAGPIVIEFLKTCQANC 203
+ + L P ++F K
Sbjct: 161 LDSDVLDRPLNIMIPKFLQFFKHSSPKI 188
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 876
Score = 30.5 bits (67), Expect = 0.22
Identities = 19/189 (10%), Positives = 76/189 (40%), Gaps = 17/189 (8%)
Query: 19 LNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLE-AVYFS 77
++P++ E E A ++L + + L + A ++ L ++ ++
Sbjct: 11 VSPDRLELEAAQKFLERAAVENLPTFL--VELSRVLANPGNSQVARVAAGLQIKNSLTSK 68
Query: 78 AQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAW 137
++ + Q + + + + +++ ++ L +T + +Q +A + ++ W
Sbjct: 69 DPDIKAQYQQRWLAIDANARREVKNYVLHTL--GTETYRPSSASQCVAGIACAEIPVNQW 126
Query: 138 EKPVVYIIEKLSHKGSILAL----LEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVI 193
+ + ++ +++ S + LE + + +++ E+ +++ +I
Sbjct: 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI--------DPEQLQDKSNEILTAII 178
Query: 194 EFLKTCQAN 202
+ ++ + +
Sbjct: 179 QGMRKEEPS 187
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 28.3 bits (62), Expect = 0.84
Identities = 21/181 (11%), Positives = 46/181 (25%), Gaps = 6/181 (3%)
Query: 46 ADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLI 105
++ + E L A+ A + + + L D L
Sbjct: 283 FFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLE 342
Query: 106 EHLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYIIEKLSHKGSILA--LLEVLTV 163
E G L + + + + + + LL
Sbjct: 343 EIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPK 402
Query: 164 LPEEV----NVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTS 219
+++ +L+L R + + + G + + KVL+ FT+
Sbjct: 403 TGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAANIKGLTFTYEPKVLRHFTA 462
Query: 220 W 220
Sbjct: 463 K 463
>d2pk8a1 d.274.1.1 (A:2-95) Hypothetical protein PF0899 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 94
Score = 26.0 bits (57), Expect = 1.6
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 157 LLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLK 197
L+ +L + E++N LK+ + F ++ G FL
Sbjct: 6 LIRILGEIEEKMNELKM-----DGFNPDIILFGREAYNFLS 41
>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo
sapiens) [TaxId: 9606]}
Length = 120
Score = 25.2 bits (54), Expect = 4.2
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 166 EEVNVLKLGKNRREEFEEELKAAGPIVIEF 195
EE +VL L K F E L A +++EF
Sbjct: 5 EEDHVLVLRK---SNFAEALAAHKYLLVEF 31
>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 119
Score = 24.5 bits (52), Expect = 8.9
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 163 VLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSW 220
V PE+ V+KL + F E +++ ++ EF +C + K +
Sbjct: 5 VAPEDSAVVKLAT---DSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK 59
>d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 211
Score = 24.9 bits (54), Expect = 9.8
Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 6/55 (10%)
Query: 6 SLDTVYAVV------HTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIY 54
D+V+ + +T NP E + L+ L +Y
Sbjct: 146 DADSVFILSYSIIMLNTDLHNPQVKEHMSFEDYSGNLKGCCNHKDFPFWYLDRVY 200
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.130 0.379
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 849,965
Number of extensions: 37596
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 12
Length of query: 238
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 155
Effective length of database: 1,268,006
Effective search space: 196540930
Effective search space used: 196540930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.1 bits)