BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1306
(109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKE 79
L P PW P+IGH+ LG+ P+ A +S+ +G + ++++G P +V++GL+ I++
Sbjct: 10 LKNPPGPWGWPLIGHMLTLGKN--PHLALSRMSQQYGDVLQIRIGSTPVVVLSGLDTIRQ 67
Query: 80 VLFVKATDFDGRPNISRYNDLFSGN 104
L + DF GRP++ + + +G
Sbjct: 68 ALVRQGDDFKGRPDLYTFTLISNGQ 92
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In
Complex With Alpha-Naphthoflavone
Length = 495
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKE 79
L P PW P++GH+ LG+ P+ A +S+ +G + ++++G P +V++ L+ I++
Sbjct: 15 LKSPPEPWGWPLLGHVLTLGKN--PHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQ 72
Query: 80 VLFVKATDFDGRPNI 94
L + DF GRP++
Sbjct: 73 ALVRQGDDFKGRPDL 87
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 13 LASVISFLPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVN 72
+A S K P P+A P+IG+ +GQ + +F +++ +G +F+++LG P +V+N
Sbjct: 1 MAKKTSSKGKPPGPFAWPLIGNAAAVGQ--AAHLSFARLARRYGDVFQIRLGSCPIVVLN 58
Query: 73 GLENIKEVLFVKATDFDGRPNISRYNDLFSGNRE 106
G I + L + + F RP+ + + + SG R
Sbjct: 59 GERAIHQALVQQGSAFADRPSFASFR-VVSGGRS 91
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 28 ALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATD 87
+LP++G L L ++ + F + K +G I+ +++G ++V + KEVL K D
Sbjct: 15 SLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKD 74
Query: 88 FDGRPNISRYNDLFSGNRE 106
F GRP ++ D+ S NR+
Sbjct: 75 FSGRPQMATL-DIASNNRK 92
>pdb|1PQ2|A Chain A, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|1PQ2|B Chain B, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|2NNH|A Chain A, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic
Acid
pdb|2NNH|B Chain B, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic
Acid
pdb|2NNI|A Chain A, Cyp2c8dh Complexed With Montelukast
pdb|2NNJ|A Chain A, Cyp2c8dh Complexed With Felodipine
pdb|2VN0|A Chain A, Cyp2c8dh Complexed With Troglitazone
Length = 476
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKE 79
LP P P LPIIG++ + ++ ++F SK +G +F + G+ P +V +G E +KE
Sbjct: 11 LPPGPTP--LPIIGNMLQIDVKDI-CKSFTNFSKVYGPVFTVYFGMNPIVVFHGYEAVKE 67
Query: 80 VLFVKATDFDGRPN 93
L +F GR N
Sbjct: 68 ALIDNGEEFSGRGN 81
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 13 LASVISFLPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVN 72
+A S + P P LP+IG++ +G ++ ++ +SK +G +F L G+ P +V++
Sbjct: 1 MAKKTSSKGRPPGPTPLPVIGNILQIGIKDIS-KSLTNLSKVYGPVFTLYFGLKPIVVLH 59
Query: 73 GLENIKEVLFVKATDFDGR 91
G E +KE L +F GR
Sbjct: 60 GYEAVKEALIDLGEEFSGR 78
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 12 KLASVISFLPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVV 71
K +S LP P P LP+IG++ +G ++ ++ +SK +G +F L G+ P +V+
Sbjct: 4 KTSSGRGKLPPGPTP--LPVIGNILQIGIKDIS-KSLTNLSKVYGPVFTLYFGLKPIVVL 60
Query: 72 NGLENIKEVLFVKATDFDGR 91
+G E +KE L +F GR
Sbjct: 61 HGYEAVKEALIDLGEEFSGR 80
>pdb|3QZ1|A Chain A, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|B Chain B, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|C Chain C, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|D Chain D, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
Length = 496
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 25 MPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVK 84
+P +P G LHLL Q +P + K G ++RL+LG+ +V+N I+E + K
Sbjct: 30 LPPLVP--GFLHLL-QPNLPIHLLSLTQKL-GPVYRLRLGLQEVVVLNSKRTIEEAMIRK 85
Query: 85 ATDFDGRPNISRY 97
DF GRP I Y
Sbjct: 86 WVDFAGRPQIPSY 98
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKE 79
LP P P LP IG+ +L E Y + IS+ +G +F + LG +V+ G + +KE
Sbjct: 11 LPPGPTP--LPFIGN-YLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVKE 67
Query: 80 VLFVKATDFDGRPNISRYNDLFSG 103
L +A +F GR + ++ LF G
Sbjct: 68 ALVDQAEEFSGRGEQATFDWLFKG 91
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex With
Anti- Platelet Drug Clopidogrel
Length = 479
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKE 79
LP P P LP++G+L + + + ++F + + +G +F + LG P +V+ G + I+E
Sbjct: 11 LPPGPSP--LPVLGNLLQMDRKGL-LRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIRE 67
Query: 80 VLFVKATDFDGRPNISRYNDLFSG 103
L +A F GR I+ + +F G
Sbjct: 68 ALVDQAEAFSGRGKIAVVDPIFQG 91
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKE 79
LP P P LP++G+L + + + ++F + + +G +F + LG P +V+ G + I+E
Sbjct: 11 LPPGPSP--LPVLGNLLQMDRKGL-LRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIRE 67
Query: 80 VLFVKATDFDGRPNISRYNDLFSG 103
L +A F GR I+ + +F G
Sbjct: 68 ALVDQAEAFSGRGKIAVVDPIFQG 91
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKE 79
LP P P LP++G+L + + + ++F + + +G +F + LG P +V+ G + I+E
Sbjct: 11 LPPGPSP--LPVLGNLLQMDRKGL-LRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIRE 67
Query: 80 VLFVKATDFDGRPNISRYNDLFSG 103
L +A F GR I+ + +F G
Sbjct: 68 ALVDQAEAFSGRGKIAVVDPIFQG 91
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKE 79
LP P P LP++G+L + + + ++F + + +G +F + LG P +V+ G + I+E
Sbjct: 11 LPPGPSP--LPVLGNLLQMDRKGL-LRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIRE 67
Query: 80 VLFVKATDFDGRPNISRYNDLFSG 103
L +A F GR I+ + +F G
Sbjct: 68 ALVDQAEAFSGRGKIAVVDPIFQG 91
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKE 79
LP P P LP++G+L + + + ++F + + +G +F + LG P +V+ G + I+E
Sbjct: 11 LPPGPSP--LPVLGNLLQMDRKGL-LRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIRE 67
Query: 80 VLFVKATDFDGRPNISRYNDLFSG 103
L +A F GR I+ + +F G
Sbjct: 68 ALVDQAEAFSGRGKIAVVDPIFQG 91
>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
Length = 476
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKE 79
LP P P LP IG+ +L E Y + IS+ +G +F + LG +V+ G + ++E
Sbjct: 11 LPPGPTP--LPFIGN-YLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVRE 67
Query: 80 VLFVKATDFDGRPNISRYNDLFSG 103
L +A +F GR + ++ +F G
Sbjct: 68 ALVDQAEEFSGRGEQATFDWVFKG 91
>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
Length = 476
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKE 79
LP P P LP IG+ +L E Y + IS+ +G +F + LG +V+ G + ++E
Sbjct: 11 LPPGPTP--LPFIGN-YLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVRE 67
Query: 80 VLFVKATDFDGRPNISRYNDLFSG 103
L +A +F GR + ++ +F G
Sbjct: 68 ALVDQAEEFSGRGEQATFDWVFKG 91
>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
Length = 476
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKE 79
LP P P LP IG+ +L E Y + IS+ +G +F + LG +V+ G + ++E
Sbjct: 11 LPPGPTP--LPFIGN-YLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVRE 67
Query: 80 VLFVKATDFDGRPNISRYNDLFSG 103
L +A +F GR + ++ +F G
Sbjct: 68 ALVDQAEEFSGRGEQATFDWVFKG 91
>pdb|2PG7|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
Length = 476
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKE 79
LP P P LP IG+ +L E Y + IS+ +G +F + LG +V+ G + ++E
Sbjct: 11 LPPGPTP--LPFIGN-YLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVRE 67
Query: 80 VLFVKATDFDGRPNISRYNDLFSG 103
L +A +F GR + ++ +F G
Sbjct: 68 ALVDQAEEFSGRGEQATFDWVFKG 91
>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
Length = 476
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKE 79
LP P P LP IG+ +L E Y + IS+ +G +F + LG +V+ G + ++E
Sbjct: 11 LPPGPTP--LPFIGN-YLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVRE 67
Query: 80 VLFVKATDFDGRPNISRYNDLFSG 103
L +A +F GR + ++ +F G
Sbjct: 68 ALVDQAEEFSGRGEQATFDWVFKG 91
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKE 79
LP P P+ PIIG++ + ++ ++ S+ +G +F + LG+ P +V++G E +KE
Sbjct: 11 LPPGPTPF--PIIGNILQIDAKDIS-KSLTKFSECYGPVFTVYLGMKPTVVLHGYEAVKE 67
Query: 80 VLFVKATDFDGRPNI 94
L +F GR ++
Sbjct: 68 ALVDLGEEFAGRGSV 82
>pdb|3E4E|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
4- Methylpyrazole
pdb|3E4E|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
4- Methylpyrazole
pdb|3E6I|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3E6I|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3GPH|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3GPH|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3KOH|A Chain A, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3KOH|B Chain B, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3LC4|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3LC4|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3T3Z|A Chain A, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|B Chain B, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|C Chain C, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|D Chain D, Human Cytochrome P450 2e1 In Complex With Pilocarpine
Length = 476
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 24 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 83
P P+ LPIIG+L L +P ++F +++ G +F L +G +V++G + +KE L
Sbjct: 13 PGPFPLPIIGNLFQLELKNIP-KSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLD 71
Query: 84 KATDFDGRPNISRYN 98
+F GR ++ ++
Sbjct: 72 YKDEFSGRGDLPAFH 86
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 12 KLASVISFLPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVV 71
K +S LP P P LP+IG++ + +V ++ +SK +G +F L G+ +V+
Sbjct: 4 KTSSGRGKLPPGPTP--LPVIGNILQIDIKDVS-KSLTNLSKIYGPVFTLYFGLERMVVL 60
Query: 72 NGLENIKEVLFVKATDFDGR 91
+G E +KE L +F GR
Sbjct: 61 HGYEVVKEALIDLGEEFSGR 80
>pdb|3IBD|A Chain A, Crystal Structure Of A Cytochrome P450 2b6 Genetic Variant
In Complex With The Inhibitor
4-(4-Chlorophenyl)imidazole
pdb|3QOA|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-Benzylpyridine.
pdb|3QU8|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|B Chain B, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|C Chain C, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|D Chain D, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|E Chain E, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|F Chain F, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3UA5|A Chain A, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
pdb|3UA5|B Chain B, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
Length = 476
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 46 QAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNISRYNDLFSG 103
++F + +G +F + LG P +++ G+E I+E L KA F GR I+ + F G
Sbjct: 34 KSFLRFREKYGDVFTVHLGPRPVVMLCGVEAIREALVDKAEAFSGRGKIAMVDPFFRG 91
>pdb|3C6G|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3C6G|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3DL9|A Chain A, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
pdb|3DL9|B Chain B, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
Length = 479
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 37 LLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRP 92
L E+P+ + S+ +G IF L LG + +V+NG + +KE L ++ F RP
Sbjct: 29 LAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRP 84
>pdb|3CZH|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
pdb|3CZH|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
Length = 481
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 37 LLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRP 92
L E+P+ + S+ +G IF L LG + +V+NG + +KE L ++ F RP
Sbjct: 29 LAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRP 84
>pdb|2F9Q|A Chain A, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|B Chain B, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|C Chain C, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|D Chain D, Crystal Structure Of Human Cytochrome P450 2d6
Length = 479
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 44 PYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNI 94
PY F + + G +F L+L P +V+NGL ++E L D RP +
Sbjct: 33 PY-CFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPV 82
>pdb|3QM4|A Chain A, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3QM4|B Chain B, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3TBG|A Chain A, Human Cytochrome P450 2d6 With Two Thioridazines Bound
In Active Site
pdb|3TBG|B Chain B, Human Cytochrome P450 2d6 With Two Thioridazines Bound
In Active Site
pdb|3TBG|C Chain C, Human Cytochrome P450 2d6 With Two Thioridazines Bound
In Active Site
pdb|3TBG|D Chain D, Human Cytochrome P450 2d6 With Two Thioridazines Bound
In Active Site
pdb|3TDA|A Chain A, Competitive Replacement Of Thioridazine By Prinomastat
In Crystals Of Cytochrome P450 2d6
pdb|3TDA|B Chain B, Competitive Replacement Of Thioridazine By Prinomastat
In Crystals Of Cytochrome P450 2d6
pdb|3TDA|C Chain C, Competitive Replacement Of Thioridazine By Prinomastat
In Crystals Of Cytochrome P450 2d6
pdb|3TDA|D Chain D, Competitive Replacement Of Thioridazine By Prinomastat
In Crystals Of Cytochrome P450 2d6
Length = 479
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 44 PYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNI 94
PY F + + G +F L+L P +V+NGL ++E L D RP +
Sbjct: 33 PY-CFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPV 82
>pdb|2XCI|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCU|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
Length = 374
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 9/58 (15%)
Query: 31 IIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDF 88
+ G +H G+ E+ +AFK I KT+ S LKL +VP + N ++ KA DF
Sbjct: 200 VAGSIHT-GEVEIILKAFKEIKKTYSS---LKLILVPRHIENA-----KIFEKKARDF 248
>pdb|4DIM|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Synthetase
From Anaerococcus Prevotii
Length = 403
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 72 NGLENIKEVLFVKATDFDGRPNI 94
N LEN+K + VKATD G I
Sbjct: 138 NALENLKLPVIVKATDLQGSKGI 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,261,948
Number of Sequences: 62578
Number of extensions: 119259
Number of successful extensions: 280
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 246
Number of HSP's gapped (non-prelim): 31
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)