Query psy1306
Match_columns 109
No_of_seqs 123 out of 1481
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 18:25:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1306.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1306hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0156|consensus 99.7 3.5E-17 7.5E-22 116.0 9.1 81 20-101 25-106 (489)
2 PLN02655 ent-kaurene oxidase 99.5 7.4E-14 1.6E-18 98.6 7.9 78 23-101 1-78 (466)
3 PLN00110 flavonoid 3',5'-hydro 99.5 4.4E-13 9.6E-18 95.6 9.7 77 17-95 27-103 (504)
4 PLN03112 cytochrome P450 famil 99.5 3.3E-13 7.1E-18 96.3 8.1 85 8-95 20-104 (514)
5 PLN02183 ferulate 5-hydroxylas 99.4 8.5E-13 1.8E-17 94.3 7.4 75 19-95 34-108 (516)
6 PLN02687 flavonoid 3'-monooxyg 99.4 9.9E-13 2.2E-17 94.0 7.7 76 19-96 32-107 (517)
7 PLN02971 tryptophan N-hydroxyl 99.4 1.7E-12 3.7E-17 93.3 8.4 77 19-95 55-132 (543)
8 PLN03234 cytochrome P450 83B1; 99.4 4E-12 8.7E-17 90.4 9.1 78 16-94 23-100 (499)
9 PLN00168 Cytochrome P450; Prov 99.4 3.7E-12 8E-17 91.1 8.6 76 20-95 34-110 (519)
10 PLN03141 3-epi-6-deoxocathaste 99.4 2.2E-12 4.7E-17 90.9 6.9 73 19-91 5-80 (452)
11 PTZ00404 cytochrome P450; Prov 99.4 5E-12 1.1E-16 89.6 8.6 74 20-95 28-101 (482)
12 PLN02394 trans-cinnamate 4-mon 99.3 2.5E-11 5.3E-16 86.5 10.1 78 16-94 25-102 (503)
13 PLN02966 cytochrome P450 83A1 99.3 1.5E-11 3.3E-16 87.6 8.6 72 20-92 28-99 (502)
14 PF00067 p450: Cytochrome P450 99.3 2.6E-12 5.6E-17 88.8 4.6 70 23-93 1-71 (463)
15 PLN02774 brassinosteroid-6-oxi 99.3 1.5E-11 3.2E-16 86.9 6.8 69 21-91 31-99 (463)
16 PLN02290 cytokinin trans-hydro 99.3 1.5E-11 3.3E-16 87.8 6.8 78 15-93 36-130 (516)
17 PLN02196 abscisic acid 8'-hydr 99.3 2.1E-11 4.6E-16 86.2 7.2 69 19-88 33-101 (463)
18 PLN02987 Cytochrome P450, fami 99.2 2.1E-11 4.6E-16 86.5 6.5 83 20-104 29-115 (472)
19 PLN02500 cytochrome P450 90B1 99.2 2E-11 4.3E-16 86.8 5.2 72 20-91 37-111 (490)
20 PLN03018 homomethionine N-hydr 99.2 8.9E-11 1.9E-15 84.5 6.7 78 20-98 39-118 (534)
21 KOG0157|consensus 99.2 1.9E-10 4.1E-15 82.2 8.4 89 19-107 33-123 (497)
22 PLN02302 ent-kaurenoic acid ox 99.1 1.4E-09 3.1E-14 77.1 8.7 72 19-91 40-116 (490)
23 PLN02169 fatty acid (omega-1)- 99.0 9.4E-10 2E-14 78.6 7.7 85 15-99 25-113 (500)
24 PLN03195 fatty acid omega-hydr 98.9 2.6E-09 5.6E-14 76.5 6.0 71 19-92 28-101 (516)
25 KOG0158|consensus 98.9 6.9E-09 1.5E-13 74.0 7.6 75 17-91 27-101 (499)
26 PLN02936 epsilon-ring hydroxyl 98.9 8.7E-09 1.9E-13 73.5 6.7 73 21-93 12-87 (489)
27 PLN02648 allene oxide synthase 98.8 5.5E-09 1.2E-13 74.5 2.9 65 19-83 15-90 (480)
28 PLN02738 carotene beta-ring hy 98.6 3.1E-07 6.7E-12 67.7 7.5 61 32-93 142-202 (633)
29 KOG0684|consensus 98.5 5.1E-07 1.1E-11 63.4 5.9 70 21-92 31-101 (486)
30 KOG0159|consensus 98.3 1.2E-06 2.6E-11 62.5 5.1 71 21-92 50-123 (519)
31 PLN02426 cytochrome P450, fami 97.0 0.0068 1.5E-07 43.9 8.2 61 28-92 48-109 (502)
32 PF13625 Helicase_C_3: Helicas 70.3 17 0.00036 21.5 4.6 40 43-84 75-114 (129)
33 PF08675 RNA_bind: RNA binding 61.3 20 0.00043 20.0 3.4 38 47-84 24-62 (87)
34 COG2124 CypX Cytochrome P450 [ 49.0 28 0.00061 24.8 3.5 39 46-84 26-66 (411)
35 KOG0107|consensus 45.8 54 0.0012 21.1 3.9 47 31-81 14-64 (195)
36 PF13893 RRM_5: RNA recognitio 43.9 40 0.00086 16.3 4.2 34 49-82 2-39 (56)
37 KOG1148|consensus 41.3 91 0.002 24.1 5.0 67 20-91 251-344 (764)
38 TIGR01642 U2AF_lg U2 snRNP aux 32.0 1.3E+02 0.0028 21.9 4.7 49 45-93 433-494 (509)
39 PRK13781 paaB phenylacetate-Co 29.2 65 0.0014 18.3 2.2 53 31-84 23-75 (95)
40 KOG0114|consensus 28.0 1.3E+02 0.0029 17.6 4.8 58 22-83 13-76 (124)
41 TIGR01661 ELAV_HUD_SF ELAV/HuD 25.8 2.2E+02 0.0049 19.5 5.6 58 31-92 273-340 (352)
42 PF05984 Cytomega_UL20A: Cytom 24.6 51 0.0011 18.3 1.2 13 1-13 1-13 (100)
43 TIGR01622 SF-CC1 splicing fact 24.2 2.7E+02 0.0059 20.0 5.2 48 45-92 386-439 (457)
44 PLN03134 glycine-rich RNA-bind 22.2 1.9E+02 0.0042 17.4 4.6 39 45-83 48-95 (144)
45 PLN03120 nucleic acid binding 21.9 2.7E+02 0.0059 19.0 5.7 58 31-92 8-71 (260)
46 PF08503 DapH_N: Tetrahydrodip 21.3 1.6E+02 0.0036 16.3 3.1 28 60-87 36-63 (83)
No 1
>KOG0156|consensus
Probab=99.72 E-value=3.5e-17 Score=115.97 Aligned_cols=81 Identities=40% Similarity=0.670 Sum_probs=73.1
Q ss_pred CCCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCC-hhhhh
Q psy1306 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPN-ISRYN 98 (109)
Q Consensus 20 ~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~-~~~~~ 98 (109)
.+.||||+++|++||++++... .++..+.++.++||+++.+|+|..|+|+++|+++++|+|.+++..|++||. .....
T Consensus 25 ~~lPPGP~~lPiIGnl~~l~~~-~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d~~fa~Rp~~~~~~~ 103 (489)
T KOG0156|consen 25 RNLPPGPPPLPIIGNLHQLGSL-PPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQDLEFADRPDPTATLK 103 (489)
T ss_pred CCCCcCCCCCCccccHHHcCCC-chhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCCccccCCCCchhhHH
Confidence 6789999999999999999884 599999999999999999999999999999999999999999999999997 23444
Q ss_pred hhh
Q psy1306 99 DLF 101 (109)
Q Consensus 99 ~~~ 101 (109)
.+.
T Consensus 104 ~~~ 106 (489)
T KOG0156|consen 104 YLS 106 (489)
T ss_pred Hhc
Confidence 444
No 2
>PLN02655 ent-kaurene oxidase
Probab=99.51 E-value=7.4e-14 Score=98.59 Aligned_cols=78 Identities=27% Similarity=0.384 Sum_probs=67.6
Q ss_pred CCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCChhhhhhhh
Q psy1306 23 APMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNISRYNDLF 101 (109)
Q Consensus 23 ~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~~~~~ 101 (109)
||||+++|++||++++... +++..+.+|.++||++|++++++.++++++||+++++||.++...|++++.......+.
T Consensus 1 ppgp~~lP~iG~l~~~~~~-~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~~~~f~~r~~~~~~~~~~ 78 (466)
T PLN02655 1 VPAVPGLPVIGNLLQLKEK-KPHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTKFSSISTRKLSKALTVLT 78 (466)
T ss_pred CcCCCCCCccccHHHcCCC-chhHHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhcCchhcCCChhhHHHHHh
Confidence 6899999999999888654 68889999999999999999999999999999999999999888998887654444343
No 3
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.47 E-value=4.4e-13 Score=95.59 Aligned_cols=77 Identities=27% Similarity=0.433 Sum_probs=66.9
Q ss_pred hhcCCCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCChh
Q psy1306 17 ISFLPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNIS 95 (109)
Q Consensus 17 ~~~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~ 95 (109)
....+.||||+++|++||+..+.. +++.++.++.++||+++++++|+.+.|+++||++++++|.++...|+.++...
T Consensus 27 ~~~~~~pPgp~~~Pl~G~l~~~~~--~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~vl~~~~~~f~~r~~~~ 103 (504)
T PLN00110 27 KPSRKLPPGPRGWPLLGALPLLGN--MPHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARAFLKTLDINFSNRPPNA 103 (504)
T ss_pred cccCCCcccCCCCCeeechhhcCC--chHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcchhhcCCCCcc
Confidence 334567899999999999887764 57889999999999999999999999999999999999998877898887543
No 4
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.46 E-value=3.3e-13 Score=96.26 Aligned_cols=85 Identities=29% Similarity=0.446 Sum_probs=70.6
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCC
Q psy1306 8 KQNFKLASVISFLPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATD 87 (109)
Q Consensus 8 ~~~~~~~~~~~~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~ 87 (109)
|.+++++ .....+.+|||.++|++||+..+.. ++...+.++.++||+++++++++.+.++++||+++++|+.++.+.
T Consensus 20 ~~~~~~~-~~~~~~~ppgp~~~pl~G~~~~~~~--~~~~~~~~~~~kyG~v~~~~~g~~~~v~v~dpe~~~~vl~~~~~~ 96 (514)
T PLN03112 20 WRWLNAS-MRKSLRLPPGPPRWPIVGNLLQLGP--LPHRDLASLCKKYGPLVYLRLGSVDAITTDDPELIREILLRQDDV 96 (514)
T ss_pred HHHcccc-ccCCCCCccCCCCCCeeeeHHhcCC--chHHHHHHHHHHhCCeEEEEecCccEEEECCHHHHHHHHHhCCcc
Confidence 4444433 3335567899999999999988765 678889999999999999999999999999999999999888888
Q ss_pred CCCCCChh
Q psy1306 88 FDGRPNIS 95 (109)
Q Consensus 88 ~~~r~~~~ 95 (109)
|++++...
T Consensus 97 f~~~~~~~ 104 (514)
T PLN03112 97 FASRPRTL 104 (514)
T ss_pred cccCCCcc
Confidence 98887643
No 5
>PLN02183 ferulate 5-hydroxylase
Probab=99.41 E-value=8.5e-13 Score=94.29 Aligned_cols=75 Identities=29% Similarity=0.548 Sum_probs=64.7
Q ss_pred cCCCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCChh
Q psy1306 19 FLPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNIS 95 (109)
Q Consensus 19 ~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~ 95 (109)
..+.||||+++|++||+..+.. ....++.+|.++||++|++++++.++|+++||+++++||.++...|+.++...
T Consensus 34 ~~~~ppgp~~~Pl~G~l~~~~~--~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~ 108 (516)
T PLN02183 34 RLPYPPGPKGLPIIGNMLMMDQ--LTHRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQDSVFSNRPANI 108 (516)
T ss_pred CCCCCcCCCCCCeeccHHhcCC--cchHHHHHHHHHhCCeeEEEeCCcceEEeCCHHHHHHHHHhhhhhhcCCCccc
Confidence 4467999999999999987754 45668899999999999999999999999999999999998877888877543
No 6
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.41 E-value=9.9e-13 Score=93.98 Aligned_cols=76 Identities=30% Similarity=0.539 Sum_probs=66.7
Q ss_pred cCCCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCChhh
Q psy1306 19 FLPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNISR 96 (109)
Q Consensus 19 ~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~ 96 (109)
..+.||||.++|++||+..+.. ++...+.+|.++||+++++++|+.++++++||++++++|.++...|++++....
T Consensus 32 ~~~~pPgp~~~P~iG~~~~~~~--~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~p~~~~~il~~~~~~f~~r~~~~~ 107 (517)
T PLN02687 32 KRPLPPGPRGWPVLGNLPQLGP--KPHHTMAALAKTYGPLFRLRFGFVDVVVAASASVAAQFLRTHDANFSNRPPNSG 107 (517)
T ss_pred CCCCCccCCCCCccccHHhcCC--chhHHHHHHHHHhCCeeEEecCCceEEEeCCHHHHHHHHHhcchhhhcCCCccc
Confidence 3456889999999999988765 688899999999999999999999999999999999999988788988875443
No 7
>PLN02971 tryptophan N-hydroxylase
Probab=99.40 E-value=1.7e-12 Score=93.33 Aligned_cols=77 Identities=21% Similarity=0.301 Sum_probs=65.3
Q ss_pred cCCCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcC-CeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCChh
Q psy1306 19 FLPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHG-SIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNIS 95 (109)
Q Consensus 19 ~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g-~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~ 95 (109)
+.+.||||+++|++||++++..+...+..+.++.++|| +++.+++|+.++|+++||+++++||.++...|++|+...
T Consensus 55 ~~~lPPGP~~lPiiGnl~~l~~~~~~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~~~~f~~rp~~~ 132 (543)
T PLN02971 55 LHPLPPGPTGFPIVGMIPAMLKNRPVFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQDALFASRPLTY 132 (543)
T ss_pred CCCCCcCCCCCCcccchHHhccCCcHhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhcchhhcCCCccc
Confidence 34678999999999999887542134677889999999 799999999999999999999999999888899988644
No 8
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.37 E-value=4e-12 Score=90.39 Aligned_cols=78 Identities=33% Similarity=0.497 Sum_probs=66.8
Q ss_pred HhhcCCCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCCh
Q psy1306 16 VISFLPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNI 94 (109)
Q Consensus 16 ~~~~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~ 94 (109)
.++..+.+|||.++|++||+..+... ++..++.++.++||+++++++|+.++|+++|||++++|+.++...|..++..
T Consensus 23 ~~~~~~~pPgp~~~P~iG~~~~~~~~-~~~~~~~~~~~~yG~~~~~~lg~~~~vvv~dpe~~~~il~~~~~~f~~r~~~ 100 (499)
T PLN03234 23 TKKSLRLPPGPKGLPIIGNLHQMEKF-NPQHFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQDLNFTARPLL 100 (499)
T ss_pred cCCCCCCCcCCCCCCeeccHHhcCCC-CccHHHHHHHHHcCCeEEEEecCcCEEEECCHHHHHHHHHhCCccccCCCCc
Confidence 33455779999999999999887543 4667889999999999999999999999999999999999888788888753
No 9
>PLN00168 Cytochrome P450; Provisional
Probab=99.37 E-value=3.7e-12 Score=91.11 Aligned_cols=76 Identities=18% Similarity=0.294 Sum_probs=64.9
Q ss_pred CCCCCCCCCCceeecccccCCC-CcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCChh
Q psy1306 20 LPKAPMPWALPIIGHLHLLGQY-EVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNIS 95 (109)
Q Consensus 20 ~~~~pgp~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~ 95 (109)
.+.||||+++|++||+..+... .+++..+.+|+++||++|++++|+.+.++++||++++++|.++...|++|+...
T Consensus 34 ~~lpPgp~~~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~il~~~~~~f~~rp~~~ 110 (519)
T PLN00168 34 RRLPPGPPAVPLLGSLVWLTNSSADVEPLLRRLIARYGPVVSLRVGSRLSVFVADRRLAHAALVERGAALADRPAVA 110 (519)
T ss_pred CCCCcCCCCCcccccHHhhccccccHHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcCCccccCCccc
Confidence 3568899999999998765421 157788999999999999999999999999999999999998888898887643
No 10
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.36 E-value=2.2e-12 Score=90.87 Aligned_cols=73 Identities=19% Similarity=0.121 Sum_probs=62.4
Q ss_pred cCCCCCCCCCCceeecccccCC---CCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCC
Q psy1306 19 FLPKAPMPWALPIIGHLHLLGQ---YEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGR 91 (109)
Q Consensus 19 ~~~~~pgp~~~~~~G~~~~~~~---~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r 91 (109)
+.+.||||.++|++||+..+.. ..++..++.++.++||++|++++++.+.++++||++++++|.++...|+.+
T Consensus 5 ~~~~Ppg~~~~P~iG~~~~l~~~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~~~~~~~ 80 (452)
T PLN03141 5 KSRLPKGSLGWPVIGETLDFISCAYSSRPESFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDGNAFVPA 80 (452)
T ss_pred CCCCCCCCCCCCchhhHHHHHhhcccCChHHHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCCCeeecc
Confidence 3457889999999999987732 115778899999999999999999999999999999999999887777755
No 11
>PTZ00404 cytochrome P450; Provisional
Probab=99.36 E-value=5e-12 Score=89.57 Aligned_cols=74 Identities=30% Similarity=0.530 Sum_probs=64.7
Q ss_pred CCCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCChh
Q psy1306 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNIS 95 (109)
Q Consensus 20 ~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~ 95 (109)
...+|||.++|++||+..+.. +++..+.++.++||+++++++++.+.|+++||+++++|+.++...|..++...
T Consensus 28 ~~~~pgp~~~p~~G~~~~~~~--~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~ 101 (482)
T PTZ00404 28 KNELKGPIPIPILGNLHQLGN--LPHRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREMFVDNFDNFSDRPKIP 101 (482)
T ss_pred CCCCCCCCCCCeeccHhhhcc--cHHHHHHHHHHHhCCeeEEEecCCCEEEECCHHHHHHHHHhcchhhcCCCCcc
Confidence 456899999999999988765 68889999999999999999999999999999999999988766787776543
No 12
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.31 E-value=2.5e-11 Score=86.47 Aligned_cols=78 Identities=28% Similarity=0.403 Sum_probs=65.9
Q ss_pred HhhcCCCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCCh
Q psy1306 16 VISFLPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNI 94 (109)
Q Consensus 16 ~~~~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~ 94 (109)
..++...+|||++.|++|++..+... .....+.+|.++||+++++++++.+.|+++||+++++|+.++...|.+++..
T Consensus 25 ~~~~~~~pPgp~~~p~~g~l~~~~~~-~~~~~~~~~~~~yG~v~~i~~g~~~~v~v~dpe~i~~il~~~~~~~~~r~~~ 102 (503)
T PLN02394 25 RGKKLKLPPGPAAVPIFGNWLQVGDD-LNHRNLAEMAKKYGDVFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRN 102 (503)
T ss_pred hcCcCCCCcCCCCCCeeeeHHhcCCC-chhHHHHHHHHHhCCeEEEEcCCeeEEEeCCHHHHHHHHHhCCccccCCCCc
Confidence 33456789999999999999877653 3567889999999999999999999999999999999998877778776543
No 13
>PLN02966 cytochrome P450 83A1
Probab=99.30 E-value=1.5e-11 Score=87.64 Aligned_cols=72 Identities=31% Similarity=0.496 Sum_probs=63.0
Q ss_pred CCCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 20 ~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
.+.||||+++|++||+..+... ++...+.+|.++||+++.+++++.+.++++||+++++|+.++...|.+++
T Consensus 28 ~~~ppgp~~~p~~G~l~~l~~~-~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~~i~~vl~~~~~~~~~~~ 99 (502)
T PLN02966 28 YKLPPGPSPLPVIGNLLQLQKL-NPQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELLKTQDVNFADRP 99 (502)
T ss_pred CCCCcCCCCCCeeccHHhcCCC-ChhHHHHHHHHHhCCeEEEecCCCcEEEECCHHHHHHHHHhCcccccCCC
Confidence 3568999999999999887543 57889999999999999999999999999999999999998777777665
No 14
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.30 E-value=2.6e-12 Score=88.78 Aligned_cols=70 Identities=37% Similarity=0.543 Sum_probs=62.7
Q ss_pred CCCCCCCceeecccccCC-CCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCC
Q psy1306 23 APMPWALPIIGHLHLLGQ-YEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPN 93 (109)
Q Consensus 23 ~pgp~~~~~~G~~~~~~~-~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~ 93 (109)
||||+++|++||+..+.. . ++...+.++.++||+++++++++.++++++||+++++|+.++...++.++.
T Consensus 1 Ppgp~~~p~~G~~~~~~~~~-~~~~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~~~~~~~~~ 71 (463)
T PF00067_consen 1 PPGPPPLPILGNLLQFRRKG-NPHEFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRSKYFSFRPR 71 (463)
T ss_dssp SSCSSSBTTTBTHHHHHTTH-HHHHHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTTTTEEEEHC
T ss_pred CcCCCCcCceeEHHHhcCCC-cHHHHHHHHHHHhCCEEEEeEecccccccccchhhcccccccccccccccc
Confidence 789999999999998873 3 688999999999999999999999999999999999999988777776644
No 15
>PLN02774 brassinosteroid-6-oxidase
Probab=99.27 E-value=1.5e-11 Score=86.90 Aligned_cols=69 Identities=17% Similarity=0.133 Sum_probs=59.2
Q ss_pred CCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCC
Q psy1306 21 PKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGR 91 (109)
Q Consensus 21 ~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r 91 (109)
..||||+++|++||+..+.. +...++.++.++||+++++++++.++++++||+++++|+.++...|..+
T Consensus 31 ~~ppgp~~~P~~G~~~~~~~--~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~ 99 (463)
T PLN02774 31 GLPPGTMGWPLFGETTEFLK--QGPDFMKNQRLRYGSFFKSHILGCPTIVSMDPELNRYILMNEGKGLVPG 99 (463)
T ss_pred CCCCCCCCCCchhhHHHHHH--hhHHHHHHHHHHhccCccceecCCCeEEEeCHHHHHHHHcCCCCeEEec
Confidence 45788999999999887755 4667889999999999999999999999999999999998777666443
No 16
>PLN02290 cytokinin trans-hydroxylase
Probab=99.26 E-value=1.5e-11 Score=87.82 Aligned_cols=78 Identities=21% Similarity=0.181 Sum_probs=61.2
Q ss_pred HHhhcCCCCCCCCCCceeecccccCCC-----------------CcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHH
Q psy1306 15 SVISFLPKAPMPWALPIIGHLHLLGQY-----------------EVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENI 77 (109)
Q Consensus 15 ~~~~~~~~~pgp~~~~~~G~~~~~~~~-----------------~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~ 77 (109)
+..+..+.+|||+++|++||++++... ......+.+|.++||+++.+|+|+.+.++++||+++
T Consensus 36 ~~~~~~~~~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~v 115 (516)
T PLN02290 36 KKIMERQGVRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGKRFIYWNGTEPRLCLTETELI 115 (516)
T ss_pred HHHHHHcCCCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHhCCeEEEccCCccEEEECCHHHH
Confidence 344455789999999999999876420 022235678999999999999999999999999999
Q ss_pred HHHHhhCCCCCCCCCC
Q psy1306 78 KEVLFVKATDFDGRPN 93 (109)
Q Consensus 78 ~~il~~~~~~~~~r~~ 93 (109)
++||.++ ..+..++.
T Consensus 116 ~~il~~~-~~~~~r~~ 130 (516)
T PLN02290 116 KELLTKY-NTVTGKSW 130 (516)
T ss_pred HHHHhcC-CCCCCCcc
Confidence 9999876 45666664
No 17
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.26 E-value=2.1e-11 Score=86.17 Aligned_cols=69 Identities=28% Similarity=0.350 Sum_probs=59.9
Q ss_pred cCCCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCC
Q psy1306 19 FLPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDF 88 (109)
Q Consensus 19 ~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~ 88 (109)
..+.||||+++|++||+.++... ++..++.++.++||+++++++++.+.++++||+++++|+.++.+.|
T Consensus 33 ~~~~Ppgp~~~P~iG~~~~~~~~-~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~ 101 (463)
T PLN02196 33 KLPLPPGTMGWPYVGETFQLYSQ-DPNVFFASKQKRYGSVFKTHVLGCPCVMISSPEAAKFVLVTKSHLF 101 (463)
T ss_pred CCCCCCCCCCCCccchHHHHHhc-CHHHHHHHHHHHhhhhheeeecCCceEEEcCHHHHHHHHhCCCCcc
Confidence 44567888889999998876443 6888999999999999999999999999999999999998876666
No 18
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.24 E-value=2.1e-11 Score=86.50 Aligned_cols=83 Identities=18% Similarity=0.183 Sum_probs=66.0
Q ss_pred CCCCCCCCCCceeecccccC----CCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCChh
Q psy1306 20 LPKAPMPWALPIIGHLHLLG----QYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNIS 95 (109)
Q Consensus 20 ~~~~pgp~~~~~~G~~~~~~----~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~ 95 (109)
.+.||||.++|++||++++. .. ++..++.+++++||+++++++++.+.++++||+++++++.++.+.|+.+.. .
T Consensus 29 ~~lppgp~~~P~iG~~~~~~~~~~~~-~~~~~~~~~~~~yG~v~~~~l~~~~~vvv~~pe~~~~il~~~~~~f~~~~~-~ 106 (472)
T PLN02987 29 MRLPPGSLGLPLVGETLQLISAYKTE-NPEPFIDERVARYGSLFMTHLFGEPTVFSADPETNRFILQNEGKLFECSYP-G 106 (472)
T ss_pred CCCcCCCcCCCchhhHHHHHhhcccC-ChHHHHHHHHHHhchhhhhhhcCCCeEEEeCHHHHHHHHhCCCceEEecCc-H
Confidence 34678999999999998763 12 578888999999999999999999999999999999999988777866532 2
Q ss_pred hhhhhhCCC
Q psy1306 96 RYNDLFSGN 104 (109)
Q Consensus 96 ~~~~~~~g~ 104 (109)
....++++.
T Consensus 107 ~~~~~lg~~ 115 (472)
T PLN02987 107 SISNLLGKH 115 (472)
T ss_pred HHHHHhCcc
Confidence 333445543
No 19
>PLN02500 cytochrome P450 90B1
Probab=99.21 E-value=2e-11 Score=86.80 Aligned_cols=72 Identities=17% Similarity=0.083 Sum_probs=59.7
Q ss_pred CCCCCCCCCCceeecccccC-C-C-CcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCC
Q psy1306 20 LPKAPMPWALPIIGHLHLLG-Q-Y-EVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGR 91 (109)
Q Consensus 20 ~~~~pgp~~~~~~G~~~~~~-~-~-~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r 91 (109)
.+.||||+++|++||+..+. . . ..+..++.+++++||+++.+++|+.++|+++||+++++||.++...|+.+
T Consensus 37 ~~~PPgp~~~PiiGn~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~vl~~~~~~f~~~ 111 (490)
T PLN02500 37 FNLPPGNMGWPFLGETIGYLKPYSATSIGEFMEQHISRYGKIYRSNLFGEPTIVSADAGLNRFILQNEGRLFECS 111 (490)
T ss_pred CCCCCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhcccccccccCCCeEEecCHHHHHHHHhCCCCeEEee
Confidence 45688999999999976432 1 1 14677889999999999999999999999999999999999887677544
No 20
>PLN03018 homomethionine N-hydroxylase
Probab=99.17 E-value=8.9e-11 Score=84.48 Aligned_cols=78 Identities=24% Similarity=0.298 Sum_probs=61.0
Q ss_pred CCCCCCCCCCceeecccccCCCCcH-HHHHHHHHHHc-CCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCChhhh
Q psy1306 20 LPKAPMPWALPIIGHLHLLGQYEVP-YQAFKVISKTH-GSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNISRY 97 (109)
Q Consensus 20 ~~~~pgp~~~~~~G~~~~~~~~~~~-~~~~~~~~~~~-g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~ 97 (109)
...||||+++|++||++++... .+ ..++..+.++| |+++++++|+.++|+++|||+++++|.++...|++|+.....
T Consensus 39 ~~~PPgp~~~P~iGnl~~l~~~-~~~~~~~~~~~~~~~g~i~~~~lg~~~~vvvsdpe~ikevl~~~~~~f~~rp~~~~~ 117 (534)
T PLN03018 39 RQLPPGPPGWPILGNLPELIMT-RPRSKYFHLAMKELKTDIACFNFAGTHTITINSDEIAREAFRERDADLADRPQLSIM 117 (534)
T ss_pred CCCCcCCCCCCeeccHHHhccC-CCcchhHHHHHHHhCCCeEEEEeCCccEEEECCHHHHHHHHHhCcHhhcCCCCchhh
Confidence 3468999999999999887432 12 23455555555 799999999999999999999999999887789988765444
Q ss_pred h
Q psy1306 98 N 98 (109)
Q Consensus 98 ~ 98 (109)
.
T Consensus 118 ~ 118 (534)
T PLN03018 118 E 118 (534)
T ss_pred h
Confidence 3
No 21
>KOG0157|consensus
Probab=99.17 E-value=1.9e-10 Score=82.20 Aligned_cols=89 Identities=21% Similarity=0.245 Sum_probs=71.9
Q ss_pred cCCCCCCCCCCceeecccccCCC-CcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCChh-h
Q psy1306 19 FLPKAPMPWALPIIGHLHLLGQY-EVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNIS-R 96 (109)
Q Consensus 19 ~~~~~pgp~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~-~ 96 (109)
....+|||+++|++|++..+... ++...++.++..+||++|+.|+|+.+.++++||+.+++||.++.+.+...+... .
T Consensus 33 ~~~~~~gp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~~~~~~~~k~~~~~~~ 112 (497)
T KOG0157|consen 33 KKKLPPGPPGWPLIGNLLEFLKPLEEILDFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILKSSNENYPKGPDYPES 112 (497)
T ss_pred HhccCCCCCCCCcccchHHhhcchhHHHHHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHhcCcccCCCchhHHHH
Confidence 44679999999999999887542 257778899999999999999999999999999999999977666666665545 6
Q ss_pred hhhhhCCCCcC
Q psy1306 97 YNDLFSGNREN 107 (109)
Q Consensus 97 ~~~~~~g~~~~ 107 (109)
+..++|++..+
T Consensus 113 ~~~~lG~gll~ 123 (497)
T KOG0157|consen 113 LKPWLGDGLLF 123 (497)
T ss_pred HHHHhcCcccc
Confidence 66777764433
No 22
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.05 E-value=1.4e-09 Score=77.09 Aligned_cols=72 Identities=21% Similarity=0.259 Sum_probs=58.9
Q ss_pred cCCCCCCCCCCceeecccccCC---CCcHHHHHHHHHHHcCC--eeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCC
Q psy1306 19 FLPKAPMPWALPIIGHLHLLGQ---YEVPYQAFKVISKTHGS--IFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGR 91 (109)
Q Consensus 19 ~~~~~pgp~~~~~~G~~~~~~~---~~~~~~~~~~~~~~~g~--i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r 91 (109)
..+.||||.++|++|++..+.. ..++..++.++.++||+ ++++++++.+.++++||+++++|+.++ +.|..+
T Consensus 40 ~~~lpPgp~~~PilG~l~~~~~~~~~~~~~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~-~~f~~~ 116 (490)
T PLN02302 40 QPPLPPGDLGWPVIGNMWSFLRAFKSSNPDSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDD-DAFEPG 116 (490)
T ss_pred CCCCcCCCCCCCccccHHHHHHhcccCCcHHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCC-CccccC
Confidence 4467899999999999887631 12577889999999997 789999999999999999999999765 456544
No 23
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.05 E-value=9.4e-10 Score=78.63 Aligned_cols=85 Identities=14% Similarity=0.116 Sum_probs=61.8
Q ss_pred HHhhcCCCCCCCCCCceeecccccCCC-CcHHHHHHHHHHHcCCeeE---EecCCccEEEEeCHHHHHHHHhhCCCCCCC
Q psy1306 15 SVISFLPKAPMPWALPIIGHLHLLGQY-EVPYQAFKVISKTHGSIFR---LKLGVVPAIVVNGLENIKEVLFVKATDFDG 90 (109)
Q Consensus 15 ~~~~~~~~~pgp~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~g~i~~---~~~~~~~~v~i~~p~~~~~il~~~~~~~~~ 90 (109)
...++.+.+|+|+++|++||+..+..+ ....++..+...+||..+. .|+|+.++++++||+++++||.++...|.+
T Consensus 25 ~~~~~~~~~p~p~~~pl~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~vvv~dpe~i~~il~~~~~~~~k 104 (500)
T PLN02169 25 FIHKKPHGQPILKNWPFLGMLPGMLHQIPRIYDWTVEVLEASNLTFYFKGPWLSGTDMLFTADPKNIHHILSSNFGNYPK 104 (500)
T ss_pred HHHhccCCCCCCCCCCcccchHHHHHccCcHHHHHHHHHHhCCCcEEEEeeccCCCCeEEEcCHHHHHHHHhhCcccCCC
Confidence 344566789999999999999766432 1344555555556886655 577899999999999999999988777877
Q ss_pred CCChhhhhh
Q psy1306 91 RPNISRYND 99 (109)
Q Consensus 91 r~~~~~~~~ 99 (109)
++....+..
T Consensus 105 ~~~~~~~~~ 113 (500)
T PLN02169 105 GPEFKKIFD 113 (500)
T ss_pred cHHHHHHHH
Confidence 654333333
No 24
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=98.92 E-value=2.6e-09 Score=76.51 Aligned_cols=71 Identities=14% Similarity=0.086 Sum_probs=54.8
Q ss_pred cCCCCCCCCCCceeecccccCCCCcHHHHHHHHHHHc---CCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 19 FLPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTH---GSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 19 ~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~---g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
..+.+|||+++|++||+..+.. + ...+.+|.++| |+++.+++++.+.++++||+++++|+.++...|..+.
T Consensus 28 ~~~~~pgp~~~p~~G~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~ 101 (516)
T PLN03195 28 SQRNRKGPKSWPIIGAALEQLK--N-YDRMHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVEHVLKTNFANYPKGE 101 (516)
T ss_pred hccccCCCCCCCeecchHHHHh--c-cchHHHHHHHHhccCCcEEEeeCCCCceEecCHHHHHHHHhhCccccCCcH
Confidence 3457899999999999865543 2 22345666666 7999999999999999999999999987655676554
No 25
>KOG0158|consensus
Probab=98.91 E-value=6.9e-09 Score=74.02 Aligned_cols=75 Identities=27% Similarity=0.290 Sum_probs=60.6
Q ss_pred hhcCCCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCC
Q psy1306 17 ISFLPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGR 91 (109)
Q Consensus 17 ~~~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r 91 (109)
.|.++.+|+|+++|++||+..+...+.......+.+.++|+++.++.+.+|.+++.|||.+++|++.+.++|++|
T Consensus 27 yw~rrGi~~~~p~p~~Gn~~~~~~~~~~~~~~~~~~~~~~~~~G~y~~~~p~l~v~D~elik~I~ik~F~~F~~r 101 (499)
T KOG0158|consen 27 YWRRRGIPGPKPLPFLGNLPGMLKRERPGDLLLDIYTKYRPVVGIYEGRQPALLVSDPELIKEILIKDFDNFYNR 101 (499)
T ss_pred hhccCCCCCCCCCCcEecHHHHHhccCcHHHHHHHHhcCCCEEEEEecCCcceEecCHHHHHHHHHHhCccCcCC
Confidence 556679999999999999998754312233444444444999999999999999999999999999999999994
No 26
>PLN02936 epsilon-ring hydroxylase
Probab=98.86 E-value=8.7e-09 Score=73.47 Aligned_cols=73 Identities=14% Similarity=0.023 Sum_probs=61.0
Q ss_pred CCCCCCCCCceeecccccCCC---CcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCC
Q psy1306 21 PKAPMPWALPIIGHLHLLGQY---EVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPN 93 (109)
Q Consensus 21 ~~~pgp~~~~~~G~~~~~~~~---~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~ 93 (109)
+.-.|..++|++|+....... ..+...+.+|+++||+++++++|+.+.++++|||++++|+.+....|.+++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~~~~f~~~~~ 87 (489)
T PLN02936 12 RLWGDDSGIPVADAKLEDVTDLLGGALFLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNYGSKYAKGLV 87 (489)
T ss_pred ccCCCCCCCccHHhHHhhHHHHhccHHHHHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhccccccCcch
Confidence 456778899999987754221 2578899999999999999999999999999999999999887678877653
No 27
>PLN02648 allene oxide synthase
Probab=98.75 E-value=5.5e-09 Score=74.52 Aligned_cols=65 Identities=20% Similarity=0.284 Sum_probs=54.3
Q ss_pred cCCCCCCCCCCceeecccccCCC---CcHHHHHHHHHHHcCC-eeEEecCCccE-------EEEeCHHHHHHHHhh
Q psy1306 19 FLPKAPMPWALPIIGHLHLLGQY---EVPYQAFKVISKTHGS-IFRLKLGVVPA-------IVVNGLENIKEVLFV 83 (109)
Q Consensus 19 ~~~~~pgp~~~~~~G~~~~~~~~---~~~~~~~~~~~~~~g~-i~~~~~~~~~~-------v~i~~p~~~~~il~~ 83 (109)
+.+.|||+.++|++|++.++... .++..++.+..++||+ +|+..+++.|. |++++||+++.||.+
T Consensus 15 ~~~~PPg~~g~P~iG~~~~~~~~~~~~~~~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~~~~v~~~ 90 (480)
T PLN02648 15 PLREIPGSYGLPFLGAIKDRLDYFYFQGEDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKSFPVLFDV 90 (480)
T ss_pred CCCCCCCCCCCcCcchhhhhhhHHHhcChHHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCceeeeecc
Confidence 45668999999999999865431 2567899999999998 99999988665 999999999999975
No 28
>PLN02738 carotene beta-ring hydroxylase
Probab=98.57 E-value=3.1e-07 Score=67.65 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=50.8
Q ss_pred eecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCC
Q psy1306 32 IGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPN 93 (109)
Q Consensus 32 ~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~ 93 (109)
.||+..+... .++..+.++.++||+|+++++|+.+.++++||+++++|+.++...|..++.
T Consensus 142 ~G~l~~i~~g-~~~~~l~~lh~kYGpI~ri~lGp~~~vvIsDpe~i~eIl~~~~~~f~k~~~ 202 (633)
T PLN02738 142 KGSISAVRGE-AFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGIL 202 (633)
T ss_pred cCcHHHhcCc-hHHHHHHHHHHHhCCEEEEEeCCCCEEEECCHHHHHHHHhhCcccCCCcch
Confidence 4666656543 688899999999999999999999999999999999999877667776643
No 29
>KOG0684|consensus
Probab=98.46 E-value=5.1e-07 Score=63.44 Aligned_cols=70 Identities=21% Similarity=0.277 Sum_probs=59.5
Q ss_pred CCCCCCCC-CceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 21 PKAPMPWA-LPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 21 ~~~pgp~~-~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
..||--.+ +|++|+...+.. ++.+++++++++||+||++.++++-+.++.+|+....++.+...+++.+.
T Consensus 31 ~~PPli~gwiP~lG~a~~fgk--~P~eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~~~~ld~~~ 101 (486)
T KOG0684|consen 31 KEPPLIKGWIPWLGSALAFGK--DPLEFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAKLADLDFEE 101 (486)
T ss_pred CCCcccccCcchhhHHHHhcc--CHHHHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCcccccCHHH
Confidence 35665555 799999999998 79999999999999999999999999999999999999977644554433
No 30
>KOG0159|consensus
Probab=98.32 E-value=1.2e-06 Score=62.49 Aligned_cols=71 Identities=25% Similarity=0.369 Sum_probs=59.3
Q ss_pred CCCCCCCCCceeecccccCCC--CcHHHHHHHHHHHcCCeeEEe-cCCccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 21 PKAPMPWALPIIGHLHLLGQY--EVPYQAFKVISKTHGSIFRLK-LGVVPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 21 ~~~pgp~~~~~~G~~~~~~~~--~~~~~~~~~~~~~~g~i~~~~-~~~~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
..+|+|..++++|.+..+... .+.++......++||+||+.. +|....|.+.||++++.++.+.+ .+..||
T Consensus 50 ~~IP~p~~~~~l~~l~~~~~~~~~~lh~~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r~EG-~~P~Rp 123 (519)
T KOG0159|consen 50 EEIPGPKGLPFLGLLWIWRAGGATKLHQHIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFRNEG-KYPFRP 123 (519)
T ss_pred hhcCCCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHhcCC-CCCCcc
Confidence 457899999999988854322 368888899999999999999 77789999999999999998775 567775
No 31
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=97.01 E-value=0.0068 Score=43.86 Aligned_cols=61 Identities=5% Similarity=-0.032 Sum_probs=43.5
Q ss_pred CCceeecccccCCCCcHHHHHHHHHHHcC-CeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 28 ALPIIGHLHLLGQYEVPYQAFKVISKTHG-SIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 28 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~g-~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
..++.|+...... +...+...+.++++ ..++++..+. ++++|||++++|+.++.+.|.+..
T Consensus 48 ~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--iv~~dpe~i~~vl~~~~~~~~k~~ 109 (502)
T PLN02426 48 RAYLTASWAKDFD--NLCDWYAHLLRRSPTGTIHVHVLGN--TITANPENVEYMLKTRFDNYPKGK 109 (502)
T ss_pred CCCccHHHHHhcc--cHHHHHHHHHHhCCCcEEEEecCCc--EEecCHHHHHHHHhhChhcCCCcH
Confidence 3567788766444 45556656777776 5677765443 899999999999988777787654
No 32
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=70.30 E-value=17 Score=21.47 Aligned_cols=40 Identities=15% Similarity=0.037 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhC
Q psy1306 43 VPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVK 84 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~ 84 (109)
+....+.+|.++||.+.-.. +...+.+.|++.+++++.+.
T Consensus 75 ~v~~~i~~w~~~~g~v~l~~--~~~~l~~~d~~~l~~l~~~~ 114 (129)
T PF13625_consen 75 NVEQSIEDWARRYGRVRLYK--GAYLLECDDPELLDELLADP 114 (129)
T ss_pred HHHHHHHHHHHhcCCEEEec--CeEEEEECCHHHHHHHHhCh
Confidence 56678899999999865522 34566789999999998653
No 33
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=61.34 E-value=20 Score=20.01 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCeeEEecCCccE-EEEeCHHHHHHHHhhC
Q psy1306 47 AFKVISKTHGSIFRLKLGVVPA-IVVNGLENIKEVLFVK 84 (109)
Q Consensus 47 ~~~~~~~~~g~i~~~~~~~~~~-v~i~~p~~~~~il~~~ 84 (109)
-+.++..-||.|...|+..... |.+.+.+.++.++..-
T Consensus 24 DI~qlFspfG~I~VsWi~dTSAfV~l~~r~~~~~v~~~~ 62 (87)
T PF08675_consen 24 DIYQLFSPFGQIYVSWINDTSAFVALHNRDQAKVVMNTL 62 (87)
T ss_dssp HHHHHCCCCCCEEEEEECTTEEEEEECCCHHHHHHHHHH
T ss_pred hHHHHhccCCcEEEEEEcCCcEEEEeecHHHHHHHHHHh
Confidence 3445555679999999988764 5589999998876543
No 34
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=48.99 E-value=28 Score=24.77 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCeeEEecCCc--cEEEEeCHHHHHHHHhhC
Q psy1306 46 QAFKVISKTHGSIFRLKLGVV--PAIVVNGLENIKEVLFVK 84 (109)
Q Consensus 46 ~~~~~~~~~~g~i~~~~~~~~--~~v~i~~p~~~~~il~~~ 84 (109)
.....+.+.|+.++.+...+. ..+++++++++++++.++
T Consensus 26 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~~v~~v~~~~ 66 (411)
T COG2124 26 FFLERAEDPYGDYFTLRLPGPGDGFWVVSRPADVREVLRDP 66 (411)
T ss_pred hhHHHHhCCCchhhhhhccCccceEEEEcCHHHHHHHHcCc
Confidence 344556677888888876443 378999999999999876
No 35
>KOG0107|consensus
Probab=45.78 E-value=54 Score=21.05 Aligned_cols=47 Identities=6% Similarity=0.082 Sum_probs=29.3
Q ss_pred eeecccccCCCCcHHHHHHHHHHHcCCeeEEec----CCccEEEEeCHHHHHHHH
Q psy1306 31 IIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKL----GVVPAIVVNGLENIKEVL 81 (109)
Q Consensus 31 ~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~----~~~~~v~i~~p~~~~~il 81 (109)
.+||+..-.. -.-++.....||++..+|+ ++.-.|-.-||..+++..
T Consensus 14 YVGnL~~~a~----k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAv 64 (195)
T KOG0107|consen 14 YVGNLGSRAT----KRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAV 64 (195)
T ss_pred EeccCCCCcc----hHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHH
Confidence 4677654322 2345667777999999986 334456567776666553
No 36
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=43.87 E-value=40 Score=16.27 Aligned_cols=34 Identities=9% Similarity=0.136 Sum_probs=23.2
Q ss_pred HHHHHHcCCeeEEecCCc----cEEEEeCHHHHHHHHh
Q psy1306 49 KVISKTHGSIFRLKLGVV----PAIVVNGLENIKEVLF 82 (109)
Q Consensus 49 ~~~~~~~g~i~~~~~~~~----~~v~i~~p~~~~~il~ 82 (109)
.+...+||.|-.+.+... -.|-..++++++.++.
T Consensus 2 ~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~ 39 (56)
T PF13893_consen 2 YKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIE 39 (56)
T ss_dssp HHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHH
T ss_pred hHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 456778999988876442 2344679999888875
No 37
>KOG1148|consensus
Probab=41.35 E-value=91 Score=24.12 Aligned_cols=67 Identities=19% Similarity=0.229 Sum_probs=39.5
Q ss_pred CCCCCCCCCCceeecccccCCC-----------------Cc----HHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHH
Q psy1306 20 LPKAPMPWALPIIGHLHLLGQY-----------------EV----PYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIK 78 (109)
Q Consensus 20 ~~~~pgp~~~~~~G~~~~~~~~-----------------~~----~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~ 78 (109)
.+.||-|.+.--+||...+..+ .+ -..+|....+ ..-|+|..|.=+.++.+..+
T Consensus 251 TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkEee~yf~sI~e-----~V~WLG~~P~kvTysSDyFd 325 (764)
T KOG1148|consen 251 TRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEEEEYFESIKE-----MVAWLGFEPYKVTYSSDYFD 325 (764)
T ss_pred EeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchhhHHHHHHHHH-----HHHHhCCCceeeecchhHHH
Confidence 4678999998889998765431 00 1122222222 23477888888888877766
Q ss_pred HH------HhhCCCCCCCC
Q psy1306 79 EV------LFVKATDFDGR 91 (109)
Q Consensus 79 ~i------l~~~~~~~~~r 91 (109)
++ |..++..|-.+
T Consensus 326 qLy~~av~LIrkG~AYVcH 344 (764)
T KOG1148|consen 326 QLYELAVELIRKGKAYVCH 344 (764)
T ss_pred HHHHHHHHHHhcCceeEEe
Confidence 54 44444444433
No 38
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=31.98 E-value=1.3e+02 Score=21.92 Aligned_cols=49 Identities=10% Similarity=0.144 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCCeeEEecC------------CccEEEEeCHHHHHHHHhh-CCCCCCCCCC
Q psy1306 45 YQAFKVISKTHGSIFRLKLG------------VVPAIVVNGLENIKEVLFV-KATDFDGRPN 93 (109)
Q Consensus 45 ~~~~~~~~~~~g~i~~~~~~------------~~~~v~i~~p~~~~~il~~-~~~~~~~r~~ 93 (109)
.+-+.+.+.+||.|..+.+. +.-.|...+.+.++..+.. +...|.++..
T Consensus 433 ~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v 494 (509)
T TIGR01642 433 YEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVV 494 (509)
T ss_pred HHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 34567788899998887753 1225668899999888754 3456666543
No 39
>PRK13781 paaB phenylacetate-CoA oxygenase subunit PaaB; Provisional
Probab=29.25 E-value=65 Score=18.33 Aligned_cols=53 Identities=9% Similarity=0.046 Sum_probs=32.5
Q ss_pred eeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhC
Q psy1306 31 IIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVK 84 (109)
Q Consensus 31 ~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~ 84 (109)
..|+++.-... .....-++.+.+.+....+|.-+...+..++|+.-...+...
T Consensus 23 HvGSvhApd~e-~Al~~Ar~~y~RR~e~vsiWVVp~~~I~as~p~ek~~~f~p~ 75 (95)
T PRK13781 23 HVGSLHAADAE-MALRNARDVYTRRNEGVSIWVVPSSAITASDPDEKGPFFEPA 75 (95)
T ss_pred eEeeeeCCCHH-HHHHHHHHHhccccCCcEEEEeeHHHccccChhhhhhccCcc
Confidence 35666543321 233344444444467889998888888899999665665443
No 40
>KOG0114|consensus
Probab=27.97 E-value=1.3e+02 Score=17.62 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=36.5
Q ss_pred CCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCc------cEEEEeCHHHHHHHHhh
Q psy1306 22 KAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVV------PAIVVNGLENIKEVLFV 83 (109)
Q Consensus 22 ~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~------~~v~i~~p~~~~~il~~ 83 (109)
.+|-...+-++-|+..- --.+-+-++..+||.|..+.+|.. -.||-.|-..++.....
T Consensus 13 lppevnriLyirNLp~~----ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dh 76 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFK----ITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDH 76 (124)
T ss_pred CChhhheeEEEecCCcc----ccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHH
Confidence 34444444455554421 233566778889999999998754 35666677777777643
No 41
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=25.81 E-value=2.2e+02 Score=19.45 Aligned_cols=58 Identities=7% Similarity=0.049 Sum_probs=36.0
Q ss_pred eeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCc---------cEEEEeCHHHHHHHHhh-CCCCCCCCC
Q psy1306 31 IIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVV---------PAIVVNGLENIKEVLFV-KATDFDGRP 92 (109)
Q Consensus 31 ~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~---------~~v~i~~p~~~~~il~~-~~~~~~~r~ 92 (109)
++||+..- .-...+.++..+||+|..+.+... -.|...+++.+..++.+ +...+.+|.
T Consensus 273 fV~NL~~~----~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~ 340 (352)
T TIGR01661 273 FVYNLSPD----TDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRV 340 (352)
T ss_pred EEeCCCCC----CCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 44666532 233456677788999887765322 25667788888777754 444555544
No 42
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=24.56 E-value=51 Score=18.29 Aligned_cols=13 Identities=31% Similarity=0.312 Sum_probs=10.5
Q ss_pred CchhhHHHHHHHH
Q psy1306 1 MARDLELKQNFKL 13 (109)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (109)
||||+|++.+...
T Consensus 1 MaRRlwiLslLAV 13 (100)
T PF05984_consen 1 MARRLWILSLLAV 13 (100)
T ss_pred CchhhHHHHHHHH
Confidence 8999999877744
No 43
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=24.24 E-value=2.7e+02 Score=19.96 Aligned_cols=48 Identities=8% Similarity=0.118 Sum_probs=30.5
Q ss_pred HHHHHHHHHHcCCeeEEecC-----CccEEEEeCHHHHHHHHhh-CCCCCCCCC
Q psy1306 45 YQAFKVISKTHGSIFRLKLG-----VVPAIVVNGLENIKEVLFV-KATDFDGRP 92 (109)
Q Consensus 45 ~~~~~~~~~~~g~i~~~~~~-----~~~~v~i~~p~~~~~il~~-~~~~~~~r~ 92 (109)
.+-+...+.+||.|..+.+. +.-+|-..+.+.+..++.+ +...|.++.
T Consensus 386 ~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~ 439 (457)
T TIGR01622 386 LDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKM 439 (457)
T ss_pred HHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeE
Confidence 34566678889998877653 2223347788888777654 344565554
No 44
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=22.23 E-value=1.9e+02 Score=17.41 Aligned_cols=39 Identities=8% Similarity=-0.030 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCCeeEEecC---------CccEEEEeCHHHHHHHHhh
Q psy1306 45 YQAFKVISKTHGSIFRLKLG---------VVPAIVVNGLENIKEVLFV 83 (109)
Q Consensus 45 ~~~~~~~~~~~g~i~~~~~~---------~~~~v~i~~p~~~~~il~~ 83 (109)
...+.++.++||.|..+.+. +.-+|-..++++++.++..
T Consensus 48 e~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~ 95 (144)
T PLN03134 48 DASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 (144)
T ss_pred HHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 45667777889988766542 2245668899999999864
No 45
>PLN03120 nucleic acid binding protein; Provisional
Probab=21.93 E-value=2.7e+02 Score=19.00 Aligned_cols=58 Identities=9% Similarity=0.155 Sum_probs=37.0
Q ss_pred eeecccccCCCCcHHHHHHHHHHHcCCeeEEecC------CccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 31 IIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLG------VVPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 31 ~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~------~~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
++||+..-. -...+.++...||.|-.+.+. +.-.|...+++.++..+.-+...+.+++
T Consensus 8 fVgNLs~~t----TE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~ 71 (260)
T PLN03120 8 KVSNVSLKA----TERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQS 71 (260)
T ss_pred EEeCCCCCC----CHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCce
Confidence 346655322 234566677778998887762 2345667899999988866555555544
No 46
>PF08503 DapH_N: Tetrahydrodipicolinate succinyltransferase N-terminal; InterPro: IPR013710 This domain is found at the N terminus of tetrahydrodipicolinate N-acetyltransferase (DapH) which catalyses the acylation of L-2-amino-6-oxopimelate to 2-N-acetyl-6-oxopimelate in the meso-diaminopimelate/lysine biosynthetic pathway of bacteria, blue-green algae, and plants []. The N-terminal domain as defined here contains three alpha-helices and two twisted hairpin loops []. ; GO: 0047200 tetrahydrodipicolinate N-acetyltransferase activity; PDB: 3CJ8_A 3BV8_A 3R8Y_F.
Probab=21.28 E-value=1.6e+02 Score=16.25 Aligned_cols=28 Identities=14% Similarity=0.077 Sum_probs=20.3
Q ss_pred EEecCCccEEEEeCHHHHHHHHhhCCCC
Q psy1306 60 RLKLGVVPAIVVNGLENIKEVLFVKATD 87 (109)
Q Consensus 60 ~~~~~~~~~v~i~~p~~~~~il~~~~~~ 87 (109)
.++..+.-.+++.+.+.++.+|..+.+.
T Consensus 36 ~~fg~~~~~vvfGd~~~i~~~Le~~~~~ 63 (83)
T PF08503_consen 36 KVFGSGNFGVVFGDWDEIKPFLEANKDK 63 (83)
T ss_dssp EEEEESSEEEEEEEHHHHHHHHHHTTTT
T ss_pred EEEeCCCcEEEEecHHHHHHHHHhchhh
Confidence 3333445678899999999999876543
Done!