Query psy1306
Match_columns 109
No_of_seqs 123 out of 1481
Neff 9.9
Searched_HMMs 29240
Date Fri Aug 16 18:26:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1306.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1306hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tbg_A Cytochrome P450 2D6; mo 99.7 5.1E-17 1.8E-21 112.5 8.7 83 17-100 6-88 (479)
2 3e6i_A CYPIIE1, P450-J, cytoch 99.6 7.1E-15 2.4E-19 101.8 9.2 84 19-103 8-91 (476)
3 3swz_A Steroid 17-alpha-hydrox 99.6 1.1E-14 3.7E-19 101.5 9.0 80 19-98 6-85 (494)
4 3pm0_A Cypib1, cytochrome P450 99.6 7.6E-15 2.6E-19 102.4 7.7 86 19-106 7-92 (507)
5 3nxu_A Cytochrome P450 3A4; al 99.5 4.7E-14 1.6E-18 98.0 6.4 73 21-95 14-87 (485)
6 1po5_A Cytochrome P450 2B4; ox 99.4 5E-13 1.7E-17 92.9 8.7 76 21-97 10-85 (476)
7 3ld6_A Lanosterol 14-alpha dem 99.4 7.7E-14 2.6E-18 96.7 4.1 76 21-98 11-87 (461)
8 2fdv_A Cytochrome P450 2A6; CY 99.4 9.6E-13 3.3E-17 91.5 8.8 84 21-105 10-93 (476)
9 2hi4_A Cytochrome P450 1A2; CY 99.4 5.6E-13 1.9E-17 93.1 7.5 85 19-105 14-98 (495)
10 1r9o_A Cytochrome P450 2C9; mo 99.4 4.7E-13 1.6E-17 93.0 7.0 73 21-94 11-83 (477)
11 3czh_A Cytochrome P450 2R1; vi 99.4 1.5E-12 5.1E-17 90.8 7.4 83 20-103 11-95 (481)
12 3gw9_A Sterol 14alpha-demethyl 99.4 4.1E-13 1.4E-17 92.3 4.3 80 21-102 3-84 (450)
13 3i3k_A Lanosterol 14-alpha dem 99.4 4.2E-13 1.4E-17 92.8 4.2 72 19-92 9-81 (461)
14 3k9v_A 1,25-dihydroxyvitamin D 99.3 3.3E-12 1.1E-16 88.4 7.5 78 16-94 19-99 (482)
15 3s79_A Cytochrome P450 19A1; o 99.3 1.9E-12 6.4E-17 90.3 6.0 76 19-96 43-120 (503)
16 3b6h_A Prostacyclin synthase; 99.3 7.2E-13 2.5E-17 92.4 2.1 71 20-92 17-88 (498)
17 3v8d_A Cholesterol 7-alpha-mon 99.2 2.6E-12 9E-17 89.5 2.7 65 19-85 11-76 (491)
18 2cib_A Cytochrome P450 51; hem 99.2 3.7E-11 1.3E-15 83.2 7.3 72 21-94 4-76 (455)
19 3qz1_A Steroid 21-hydroxylase; 99.2 2.2E-11 7.6E-16 84.7 6.1 79 18-103 26-104 (496)
20 3dax_A Cytochrome P450 7A1; ch 99.1 1.7E-11 5.8E-16 85.2 2.4 63 21-85 13-76 (491)
21 3b98_A Prostaglandin I2 syntha 99.1 1.5E-11 5.2E-16 85.1 1.8 65 19-85 16-81 (475)
22 2ij2_A Cytochrome P450 BM3; mo 99.1 1.9E-10 6.6E-15 80.0 6.8 62 21-83 3-64 (470)
23 2ve3_A Putative cytochrome P45 99.1 5.2E-11 1.8E-15 82.3 3.7 70 18-90 9-78 (444)
24 3dbg_A Putative cytochrome P45 99.1 6.3E-11 2.2E-15 82.2 3.5 66 21-91 23-88 (467)
25 3n9y_A Cholesterol SIDE-chain 99.0 6.8E-10 2.3E-14 77.1 5.4 76 18-95 6-84 (487)
26 2cd8_A Cytochrome P450 monooxy 98.9 4E-10 1.4E-14 78.0 3.0 69 19-92 24-94 (436)
27 1n97_A CYP175A1; electron tran 98.7 3.3E-09 1.1E-13 72.2 2.1 63 25-92 3-65 (389)
28 3dsk_A Cytochrome P450 74A, ch 98.6 2.8E-08 9.4E-13 69.2 2.7 65 17-82 24-100 (495)
29 1ued_A P450 OXYC, P450 monooxy 98.4 2.4E-07 8.2E-12 63.4 4.5 63 20-92 9-78 (406)
30 3awm_A Fatty acid alpha-hydrox 98.4 1.8E-07 6.1E-12 64.0 3.7 63 23-92 4-67 (415)
31 1jfb_A Nitric-oxide reductase 98.4 5.8E-07 2E-11 61.3 5.5 57 22-84 2-59 (404)
32 1izo_A P450bsbeta, cytochrome 98.4 2.8E-07 9.7E-12 63.1 3.9 60 28-91 7-67 (417)
33 2zbx_A Cytochrome P450-SU1; be 98.3 2E-06 6.9E-11 58.9 6.1 67 21-92 5-73 (412)
34 3mdm_A Cholesterol 24-hydroxyl 98.1 4.6E-06 1.6E-10 57.4 5.9 48 43-92 11-58 (456)
35 1cpt_A Cytochrome P450-TERP; o 98.0 5.2E-06 1.8E-10 57.1 3.3 65 21-93 6-75 (428)
36 1z8o_A 6-deoxyerythronolide B 97.9 2E-05 6.8E-10 53.8 5.7 48 43-93 15-62 (404)
37 1s1f_A Putative cytochrome P45 97.9 1.4E-05 4.8E-10 54.6 5.0 65 21-93 8-74 (406)
38 3dan_A Cytochrome P450 74A2; A 97.9 1.8E-06 6.1E-11 59.7 -0.3 49 18-66 6-59 (473)
39 3ivy_A Cytochrome P450 CYP125; 97.8 3.3E-05 1.1E-09 53.3 5.7 68 22-93 19-94 (433)
40 2zwu_A Camphor 5-monooxygenase 97.8 3.6E-05 1.2E-09 52.9 5.5 70 19-92 9-86 (415)
41 3abb_A CYP105D6, cytochrome P4 97.8 2.7E-05 9.3E-10 53.2 4.8 46 43-91 25-71 (408)
42 3a4g_A Vitamin D hydroxylase; 97.8 2.8E-05 9.4E-10 53.4 4.8 48 43-93 21-68 (411)
43 3oo3_A OXY protein; cytochrome 97.8 2.4E-05 8.1E-10 53.0 4.3 51 43-95 13-67 (384)
44 3ejb_B Biotin biosynthesis cyt 97.8 4.5E-05 1.5E-09 51.9 5.7 49 43-93 14-62 (404)
45 4fb2_A P450CIN; heme, monooxyg 97.7 4.3E-05 1.5E-09 52.0 4.9 50 43-94 20-71 (398)
46 1odo_A Putative cytochrome P45 97.7 5.7E-05 1.9E-09 51.6 5.2 41 43-84 16-56 (408)
47 2z36_A MOXA, cytochrome P450 t 97.7 7E-05 2.4E-09 51.4 5.2 66 19-93 5-71 (413)
48 3aba_A Cytochrome P450; oxidor 97.6 5.7E-05 1.9E-09 51.6 3.8 47 43-92 20-67 (403)
49 1gwi_A CYP154C1, cytochrome P4 97.6 0.00017 5.7E-09 49.4 5.8 41 43-84 18-59 (411)
50 2y5n_A MYCG, P-450-like protei 97.5 6.8E-05 2.3E-09 51.5 3.9 47 43-92 38-85 (417)
51 2xbk_A PIMD protein; epoxidati 97.5 8.1E-05 2.8E-09 51.0 4.0 48 43-93 27-75 (404)
52 2jjn_A Cytochrome P450 113A1; 97.5 0.00011 3.9E-09 50.2 4.6 62 15-93 13-74 (411)
53 1n40_A P450 MT2, cytochrome P4 97.5 0.00012 4.1E-09 49.9 4.6 44 43-89 17-61 (396)
54 2z3t_A Cytochrome P450; monoxy 97.5 0.00019 6.7E-09 49.3 5.2 48 43-93 21-70 (425)
55 2wm5_A CYP124, putative cytoch 97.4 0.00029 1E-08 48.6 5.4 48 43-92 45-99 (435)
56 1q5d_A P450 epoxidase; cytochr 97.4 0.00025 8.7E-09 48.6 4.8 45 43-92 27-71 (419)
57 3tyw_A Putative cytochrome P45 97.3 0.00033 1.1E-08 48.0 4.4 47 43-92 30-77 (417)
58 3lxh_A Cytochrome P450; heme, 97.3 0.00084 2.9E-08 46.0 6.5 49 43-93 39-88 (421)
59 2uuq_A CYP130, cytochrome P450 97.2 0.0003 1E-08 48.3 4.2 60 31-94 11-78 (414)
60 3nc3_A Cytochrome P450 CYPX; c 97.1 0.00043 1.5E-08 47.9 4.0 50 43-96 54-103 (441)
61 3tkt_A Cytochrome P450; aromat 97.1 0.00049 1.7E-08 47.7 3.9 48 44-93 47-97 (450)
62 3oft_A Cytochrome P450, CYP101 97.1 0.0014 4.8E-08 44.4 5.9 47 43-92 25-71 (396)
63 2dkk_A Cytochrome P450; CYP158 97.0 0.00074 2.5E-08 46.3 4.0 47 43-92 28-76 (411)
64 3mgx_A Putative P450 monooxyge 96.8 0.0017 5.9E-08 44.6 5.0 49 43-93 38-88 (415)
65 2xkr_A CYP142, putative cytoch 96.7 0.0018 6.2E-08 44.0 4.1 46 43-93 19-64 (398)
66 3r9b_A Cytochrome P450 164A2; 96.5 0.0028 9.6E-08 43.2 4.0 46 43-93 30-75 (418)
67 3buj_A CALO2; heme, iron, meta 96.2 0.0022 7.6E-08 43.5 2.4 44 43-92 14-57 (397)
68 1io7_A Cytochrome P450 CYP119; 96.2 0.0052 1.8E-07 41.3 4.1 42 46-93 3-44 (368)
69 1lfk_A OXYB, P450 monooxygenas 96.1 0.0065 2.2E-07 41.3 4.1 42 50-93 21-66 (398)
70 3rwl_A Cytochrome P450 alkane 96.0 0.015 5.1E-07 40.0 5.7 48 43-92 39-87 (426)
71 3b4x_A 367AA long hypothetical 96.0 0.0066 2.3E-07 40.9 3.7 41 46-92 3-43 (367)
72 2rfb_A Cytochrome P450; heme, 95.0 0.014 4.8E-07 38.8 2.7 34 53-92 2-35 (343)
73 2yjn_B Erycii, DTDP-4-keto-6-d 94.4 0.0055 1.9E-07 41.9 -0.5 63 22-92 35-102 (381)
74 3p3o_A Cytochrome P450; monoox 90.6 0.11 3.8E-06 35.4 1.9 39 43-84 34-72 (416)
75 4dnj_A Putative cytochrome P45 90.5 0.57 1.9E-05 31.9 5.3 44 43-90 35-78 (412)
76 2wiy_A XPLA-heme, cytochrome P 78.0 2.1 7.1E-05 28.9 3.3 43 43-91 21-63 (394)
77 2diu_A KIAA0430 protein; struc 75.8 7.8 0.00027 21.2 7.0 61 32-93 14-76 (96)
78 2krb_A Eukaryotic translation 68.4 9.8 0.00033 19.2 7.7 48 44-91 20-75 (81)
79 3s6e_A RNA-binding protein 39; 65.5 15 0.00052 20.4 4.9 71 23-93 3-85 (114)
80 1whv_A Poly(A)-specific ribonu 64.3 16 0.00055 20.2 4.3 39 44-82 28-67 (100)
81 1s79_A Lupus LA protein; RRM, 62.2 16 0.00056 19.6 5.8 59 31-93 15-81 (103)
82 1iqt_A AUF1, heterogeneous nuc 60.2 14 0.00047 18.1 4.4 46 46-91 14-68 (75)
83 2dgx_A KIAA0430 protein; RRM d 59.0 18 0.0006 18.9 5.6 54 30-83 12-71 (96)
84 3lqv_A PRE-mRNA branch site pr 56.3 22 0.00075 19.1 7.4 67 22-92 3-76 (115)
85 3ns6_A Eukaryotic translation 53.9 23 0.00078 18.7 5.7 61 30-90 9-81 (100)
86 3ctr_A Poly(A)-specific ribonu 51.0 12 0.00042 20.7 2.4 50 44-93 18-70 (101)
87 1nu4_A U1A RNA binding domain; 47.8 28 0.00096 17.9 5.8 55 29-83 10-70 (97)
88 2a3j_A U1 small nuclear ribonu 46.3 38 0.0013 19.0 7.8 64 29-92 31-101 (127)
89 2nlw_A Eukaryotic translation 46.0 33 0.0011 18.2 6.6 63 29-91 17-89 (105)
90 2mss_A Protein (musashi1); RNA 45.3 27 0.00092 17.0 5.0 47 46-92 14-69 (75)
91 4dxy_A Cytochrome P450, CYP101 45.3 39 0.0013 23.0 4.7 48 43-92 38-86 (417)
92 3pgw_S U1-70K; protein-RNA com 43.6 79 0.0027 21.9 6.5 51 29-83 104-163 (437)
93 2pe8_A Splicing factor 45; RRM 42.3 40 0.0014 18.2 4.7 69 24-92 5-85 (105)
94 3beg_B Splicing factor, argini 42.3 41 0.0014 18.2 6.9 59 30-92 19-80 (115)
95 2cpi_A CCR4-NOT transcription 37.5 25 0.00084 19.0 2.3 59 29-91 17-91 (111)
96 2bz2_A Negative elongation fac 37.4 53 0.0018 18.1 3.9 48 45-92 51-102 (121)
97 2kvi_A Nuclear polyadenylated 37.4 45 0.0015 17.2 5.8 59 30-92 13-74 (96)
98 3ue2_A Poly(U)-binding-splicin 37.4 54 0.0018 18.2 5.2 68 26-93 19-101 (118)
99 3n9u_C Cleavage and polyadenyl 37.3 61 0.0021 18.8 4.7 48 45-92 69-128 (156)
100 2jwn_A Embryonic polyadenylate 36.0 52 0.0018 17.8 3.6 46 46-91 51-105 (124)
101 2dgs_A DAZ-associated protein 35.8 48 0.0016 17.1 5.6 59 30-92 13-80 (99)
102 1x5p_A Negative elongation fac 34.4 51 0.0017 17.0 4.5 39 45-83 27-68 (97)
103 3v4m_A Splicing factor U2AF 65 33.7 58 0.002 17.5 5.0 49 44-92 28-88 (105)
104 1b35_D CRPV, protein (cricket 33.6 13 0.00044 17.7 0.6 12 27-38 29-40 (57)
105 3s7r_A Heterogeneous nuclear r 33.5 42 0.0014 16.8 2.8 52 30-85 14-74 (87)
106 3ex7_B RNA-binding protein 8A; 32.4 63 0.0022 17.5 6.2 59 30-92 25-93 (126)
107 2d9o_A DNAJ (HSP40) homolog, s 32.3 62 0.0021 17.3 6.0 48 44-92 30-81 (100)
108 4f25_A Polyadenylate-binding p 31.9 63 0.0022 17.4 5.0 50 30-83 8-64 (115)
109 2dnm_A SRP46 splicing factor; 31.5 59 0.002 16.9 4.5 59 30-92 16-84 (103)
110 1x4c_A Splicing factor, argini 31.5 62 0.0021 17.1 4.8 50 30-83 18-69 (108)
111 2hvz_A Splicing factor, argini 31.4 59 0.002 16.8 4.6 47 46-92 15-66 (101)
112 1p27_B RNA-binding protein 8A; 30.9 61 0.0021 16.9 5.3 59 30-92 26-94 (106)
113 2wbr_A GW182, gawky, LD47780P; 30.5 66 0.0023 17.2 6.4 49 30-82 10-61 (89)
114 3ulh_A THO complex subunit 4; 30.2 64 0.0022 16.9 3.8 57 30-90 32-97 (107)
115 2do4_A Squamous cell carcinoma 30.0 62 0.0021 16.7 4.0 59 29-91 19-86 (100)
116 2cjk_A Nuclear polyadenylated 29.6 79 0.0027 17.8 4.6 47 46-92 102-157 (167)
117 2cqd_A RNA-binding region cont 29.4 70 0.0024 17.1 4.5 57 30-90 20-85 (116)
118 2dgu_A Heterogeneous nuclear r 29.1 67 0.0023 16.7 5.3 51 29-83 13-64 (103)
119 2dgv_A HnRNP M, heterogeneous 28.9 62 0.0021 16.3 5.2 59 30-92 11-77 (92)
120 2voo_A Lupus LA protein; RNA-b 28.6 66 0.0022 19.4 3.4 49 44-92 122-178 (193)
121 1sjq_A Polypyrimidine tract-bi 28.5 77 0.0026 17.3 5.6 54 25-82 14-70 (105)
122 3s8s_A Histone-lysine N-methyl 28.2 75 0.0026 17.1 4.9 58 30-91 9-76 (110)
123 2dnr_A Synaptojanin-1; RRM dom 28.1 76 0.0026 17.0 5.1 48 43-90 27-75 (91)
124 2dh8_A DAZ-associated protein 27.8 52 0.0018 17.2 2.6 57 30-90 19-84 (105)
125 2dnz_A Probable RNA-binding pr 27.6 67 0.0023 16.3 6.8 60 30-93 8-77 (95)
126 1x4b_A Heterogeneous nuclear r 26.6 57 0.0019 17.5 2.6 56 31-90 31-95 (116)
127 1rk8_A CG8781-PA, CG8781-PA pr 26.0 1E+02 0.0034 17.8 4.9 58 30-91 75-142 (165)
128 1uaw_A Mouse-musashi-1; RNP-ty 25.8 65 0.0022 15.5 4.4 46 47-92 16-70 (77)
129 2xnq_A Nuclear polyadenylated 25.6 78 0.0027 16.4 5.3 50 30-83 25-76 (97)
130 1l3k_A Heterogeneous nuclear r 25.3 1E+02 0.0035 17.8 3.8 56 29-88 15-79 (196)
131 3pgw_A U1-A; protein-RNA compl 25.0 1.3E+02 0.0045 18.8 5.8 55 29-83 11-71 (282)
132 1x4d_A Matrin 3; structural ge 24.9 88 0.003 16.8 3.8 54 26-82 14-70 (102)
133 3ucg_A Polyadenylate-binding p 24.8 74 0.0025 15.8 3.5 46 46-91 21-75 (89)
134 1x5s_A Cold-inducible RNA-bind 24.6 81 0.0028 16.2 5.8 61 28-92 13-83 (102)
135 2cpj_A Non-POU domain-containi 24.5 81 0.0028 16.2 3.2 59 30-92 18-80 (99)
136 1x4e_A RNA binding motif, sing 24.1 75 0.0026 15.7 4.3 50 29-82 7-65 (85)
137 2cph_A RNA binding motif prote 23.9 86 0.0029 16.3 6.5 60 29-92 17-88 (107)
138 4fxv_A ELAV-like protein 1; RN 23.9 88 0.003 16.4 4.9 57 31-91 23-89 (99)
139 2fy1_A RNA-binding motif prote 23.7 95 0.0033 16.7 4.8 59 30-92 10-77 (116)
140 2dnh_A Bruno-like 5, RNA bindi 23.6 87 0.003 16.2 4.0 57 30-90 18-83 (105)
141 1sjr_A Polypyrimidine tract-bi 23.2 1.3E+02 0.0043 18.0 4.9 48 32-83 51-103 (164)
142 2err_A Ataxin-2-binding protei 22.8 89 0.003 16.6 2.9 57 30-90 32-96 (109)
143 2dgt_A RNA-binding protein 30; 22.7 86 0.0029 15.8 5.0 50 30-83 13-63 (92)
144 1whx_A Hypothetical protein ri 22.6 99 0.0034 16.5 6.2 59 31-93 14-76 (111)
145 1x5u_A Splicing factor 3B subu 22.6 92 0.0031 16.1 7.5 59 30-92 18-86 (105)
146 3d2w_A TAR DNA-binding protein 22.6 88 0.003 15.9 5.2 48 29-80 13-64 (89)
147 1ufw_A Synaptojanin 2; RNP dom 22.3 1E+02 0.0036 16.7 4.1 48 43-90 36-84 (95)
148 1wf1_A RNA-binding protein RAL 22.3 97 0.0033 16.3 3.8 57 30-90 30-89 (110)
149 4a8x_A RNA-binding protein wit 22.0 85 0.0029 15.5 4.8 56 31-90 8-74 (88)
150 2cqc_A Arginine/serine-rich sp 21.9 89 0.0031 15.7 5.6 52 28-83 16-76 (95)
151 1wg5_A Heterogeneous nuclear r 21.9 98 0.0033 16.2 5.0 59 30-92 18-85 (104)
152 2d9p_A Polyadenylate-binding p 21.6 96 0.0033 16.0 5.7 61 28-92 16-84 (103)
153 2zdj_A Hypothetical protein TT 21.4 90 0.0031 15.6 2.6 20 64-83 10-29 (69)
154 2dit_A HIV TAT specific factor 21.0 1.1E+02 0.0037 16.3 4.7 48 45-92 40-93 (112)
155 1why_A Hypothetical protein ri 20.6 99 0.0034 15.8 6.6 57 29-89 19-79 (97)
156 2cqi_A Nucleolysin TIAR; RNA r 20.5 1E+02 0.0035 15.9 4.8 50 29-82 17-73 (103)
157 2cpf_A RNA binding motif prote 20.5 99 0.0034 15.7 4.3 57 30-90 8-77 (98)
158 2cq4_A RNA binding motif prote 20.2 1.1E+02 0.0038 16.1 3.7 46 46-91 40-94 (114)
159 2ad9_A Polypyrimidine tract-bi 20.2 1.2E+02 0.0043 16.8 5.1 50 29-82 33-85 (119)
No 1
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=99.70 E-value=5.1e-17 Score=112.51 Aligned_cols=83 Identities=28% Similarity=0.421 Sum_probs=71.1
Q ss_pred hhcCCCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCChhh
Q psy1306 17 ISFLPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNISR 96 (109)
Q Consensus 17 ~~~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~ 96 (109)
.++.+.||||+++|++||+.++... +....+.+|.++||+||++++|+.++|+++||+++++||.+++..|++|+....
T Consensus 6 ss~~kLPPGP~~lP~iGn~~~~~~~-~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~i~~vl~~~~~~f~~r~~~~~ 84 (479)
T 3tbg_A 6 SSKGKLPPGPLPLPGLGNLLHVDFQ-NTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPI 84 (479)
T ss_dssp ---CCCCCCSCCBTTTBTGGGCCTT-SHHHHHHHHHHHHCSEEEEEETTEEEEEEEHHHHHHHHHTTTGGGSCBCCCCGG
T ss_pred CCCCCCCCCCCCcCcccchHhhcCC-CHHHHHHHHHHHhCCEEEEEECCeeEEEECCHHHHHHHHHhCChhhcCCCchHH
Confidence 3445789999999999999988654 788899999999999999999999999999999999999988888998887665
Q ss_pred hhhh
Q psy1306 97 YNDL 100 (109)
Q Consensus 97 ~~~~ 100 (109)
...+
T Consensus 85 ~~~~ 88 (479)
T 3tbg_A 85 TQIL 88 (479)
T ss_dssp GGGG
T ss_pred HHHh
Confidence 5544
No 2
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=99.59 E-value=7.1e-15 Score=101.81 Aligned_cols=84 Identities=26% Similarity=0.458 Sum_probs=71.5
Q ss_pred cCCCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCChhhhh
Q psy1306 19 FLPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNISRYN 98 (109)
Q Consensus 19 ~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~~ 98 (109)
+.+.||||+++|++||+..+... ++...+.+|.++||+++++++++.+.++++||+++++||.++...|++++....+.
T Consensus 8 ~~~lpPgP~~~PliG~~~~~~~~-~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~~~~v~~il~~~~~~f~~r~~~~~~~ 86 (476)
T 3e6i_A 8 KGKLPPGPFPLPIIGNLFQLELK-NIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLDYKDEFSGRGDLPAFH 86 (476)
T ss_dssp --CCCCCCCCBTTTBTGGGCCTT-CHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTSTTTTCEECCCGGGG
T ss_pred CCCCCcCCCCcccccChhhhccc-cHhHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcchHhhCCCCCCchhh
Confidence 34679999999999999998544 78899999999999999999999999999999999999998877898887666555
Q ss_pred hhhCC
Q psy1306 99 DLFSG 103 (109)
Q Consensus 99 ~~~~g 103 (109)
.+.++
T Consensus 87 ~~~~~ 91 (476)
T 3e6i_A 87 AHRDR 91 (476)
T ss_dssp GGTTS
T ss_pred eecCC
Confidence 55544
No 3
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=99.57 E-value=1.1e-14 Score=101.53 Aligned_cols=80 Identities=26% Similarity=0.438 Sum_probs=65.6
Q ss_pred cCCCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCChhhhh
Q psy1306 19 FLPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNISRYN 98 (109)
Q Consensus 19 ~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~~ 98 (109)
..+.||||+++|++||+.++.....++..+.+|.++||+++++++|+.+.++++||+++++||.++...|++|+......
T Consensus 6 ~~~~PPgP~~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~~k~il~~~~~~f~~rp~~~~~~ 85 (494)
T 3swz_A 6 GAKYPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLD 85 (494)
T ss_dssp ------CCBCCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTBBCCCCHHHH
T ss_pred CCCCCCCCCCCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCCCCEEEECCHHHHHHHHHhCcHhhCCCCCcHHHH
Confidence 34679999999999999988542157888999999999999999999999999999999999999888999998765553
No 4
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=99.56 E-value=7.6e-15 Score=102.35 Aligned_cols=86 Identities=28% Similarity=0.574 Sum_probs=55.2
Q ss_pred cCCCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCChhhhh
Q psy1306 19 FLPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNISRYN 98 (109)
Q Consensus 19 ~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~~ 98 (109)
..+.||||+++|++||+..+.. ++...+.++.++||+++++++++.+.++++||+++++||.++...|++++......
T Consensus 7 ~~~~pPgP~~~P~iG~~~~~~~--~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~~ 84 (507)
T 3pm0_A 7 SKGKPPGPFAWPLIGNAAAVGQ--AAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPSFASFR 84 (507)
T ss_dssp ---------------------C--CHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTSCBCCCCHHHH
T ss_pred CCCCCcCCCCCCeeCchhhcCc--cHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCcchHHH
Confidence 4467999999999999998876 78899999999999999999999999999999999999988888999888766555
Q ss_pred hhhCCCCc
Q psy1306 99 DLFSGNRE 106 (109)
Q Consensus 99 ~~~~g~~~ 106 (109)
.+.+|.+.
T Consensus 85 ~~~~g~~l 92 (507)
T 3pm0_A 85 VVSGGRSM 92 (507)
T ss_dssp HGGGGTCS
T ss_pred hhcCCCce
Confidence 44444443
No 5
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=99.49 E-value=4.7e-14 Score=97.98 Aligned_cols=73 Identities=21% Similarity=0.249 Sum_probs=64.8
Q ss_pred CCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhC-CCCCCCCCChh
Q psy1306 21 PKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVK-ATDFDGRPNIS 95 (109)
Q Consensus 21 ~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~-~~~~~~r~~~~ 95 (109)
+.+|||+++|++||+..+.. ++..++.+|.++||+++++++|+.+.++++||+++++||.++ ...|.+++...
T Consensus 14 ~~~PGP~~~PliGn~~~~~~--~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~~f~~r~~~~ 87 (485)
T 3nxu_A 14 LGIPGPTPLPFLGNILSYHK--GFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFG 87 (485)
T ss_dssp HTCCCCCCBTTTBTGGGGGG--CHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTTTTTTTCCCCCCCS
T ss_pred CCCCCCCCcCeecCcHHhhc--ChHHHHHHHHHHcCCeEEEEeCCCCEEEECCHHHHHHHHhccchhhccCCcccc
Confidence 57999999999999999876 688889999999999999999999999999999999999877 56777776443
No 6
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=99.44 E-value=5e-13 Score=92.93 Aligned_cols=76 Identities=29% Similarity=0.515 Sum_probs=65.1
Q ss_pred CCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCChhhh
Q psy1306 21 PKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNISRY 97 (109)
Q Consensus 21 ~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~ 97 (109)
..+|||+++|++||+..+... ++...+.++.++||+++++++++.+.++++||+++++||.++...|++++....+
T Consensus 10 ~~pPgP~~~p~iG~~~~~~~~-~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~ 85 (476)
T 1po5_A 10 KLPPGPSPLPVLGNLLQMDRK-GLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVV 85 (476)
T ss_dssp CCCCCSCCBTTTBTGGGCCTT-CHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCGGGG
T ss_pred CCCcCCCCCCccccHHhccCC-cHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCCcHHH
Confidence 578999999999999988433 7888999999999999999999989999999999999998776788876654333
No 7
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=99.43 E-value=7.7e-14 Score=96.68 Aligned_cols=76 Identities=17% Similarity=0.316 Sum_probs=65.4
Q ss_pred CCCCCCCC-CceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCChhhhh
Q psy1306 21 PKAPMPWA-LPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNISRYN 98 (109)
Q Consensus 21 ~~~pgp~~-~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~~ 98 (109)
+.||+|++ +|++||+..+.. ++..++.++.++||++|++++++.+.|+++||+++++|+.++...|+.++....+.
T Consensus 11 ~~PP~~~~~lP~iG~~~~~~~--~~~~~~~~~~~kYG~i~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~ 87 (461)
T 3ld6_A 11 KSPPYIFSPIPFLGHAIAFGK--SPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLT 87 (461)
T ss_dssp CCCCBCCCSSTTTBTHHHHHH--CHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHHH
T ss_pred CCCCCCCCCcCeeeeHHHhhh--CHHHHHHHHHHHhCCEEEEEECCccEEEEeCHHHHHHHHhCCccccCCCcchhhhh
Confidence 45677764 899999998876 78999999999999999999999999999999999999998887888776544443
No 8
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=99.41 E-value=9.6e-13 Score=91.48 Aligned_cols=84 Identities=29% Similarity=0.508 Sum_probs=68.1
Q ss_pred CCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCChhhhhhh
Q psy1306 21 PKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNISRYNDL 100 (109)
Q Consensus 21 ~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~~~~ 100 (109)
..+|||+++|++||+..+... ++...+.++.++||+++++++++.+.++++||+++++||.++...|++++....+..+
T Consensus 10 ~~pPgP~~~p~iG~~~~~~~~-~~~~~~~~l~~~yG~v~~~~~~~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~~~ 88 (476)
T 2fdv_A 10 KLPPGPTPLPFIGNYLQLNTE-QMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQATFDWV 88 (476)
T ss_dssp BCCCCCCCBTTTBTGGGCCTT-BHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCCHHHHHH
T ss_pred CCCCCCCCCcccccHhhcCCc-chHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcChHhhCCCCCcHHHhhh
Confidence 468999999999999988533 7888999999999999999999999999999999999997766788877654433333
Q ss_pred hCCCC
Q psy1306 101 FSGNR 105 (109)
Q Consensus 101 ~~g~~ 105 (109)
..|.+
T Consensus 89 ~~~~~ 93 (476)
T 2fdv_A 89 FKGYG 93 (476)
T ss_dssp HTTCS
T ss_pred cCCCC
Confidence 33433
No 9
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=99.41 E-value=5.6e-13 Score=93.13 Aligned_cols=85 Identities=29% Similarity=0.667 Sum_probs=69.1
Q ss_pred cCCCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCChhhhh
Q psy1306 19 FLPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNISRYN 98 (109)
Q Consensus 19 ~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~~ 98 (109)
.++.+|||+++|++||+..+.. ++...+.++.++||+++++++++.++++++||+++++|+.++...|++++....+.
T Consensus 14 ~lp~~PgP~~~p~~G~~~~~~~--~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~i~~il~~~~~~f~~r~~~~~~~ 91 (495)
T 2hi4_A 14 GLKSPPEPWGWPLLGHVLTLGK--NPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGRPDLYTST 91 (495)
T ss_dssp TCBCCCCCCCBTTTBTHHHHTT--CHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTGGGSCBCCCCHHHH
T ss_pred CCCCCCCCCCCcceeeHHhcCc--cHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhcchhhCCCCCcHHHH
Confidence 3445699999999999988765 68889999999999999999999999999999999999987766788887554444
Q ss_pred hhhCCCC
Q psy1306 99 DLFSGNR 105 (109)
Q Consensus 99 ~~~~g~~ 105 (109)
.+.++.+
T Consensus 92 ~~~~~~~ 98 (495)
T 2hi4_A 92 LITDGQS 98 (495)
T ss_dssp TSTTSCC
T ss_pred HhcCCCC
Confidence 3333333
No 10
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=99.41 E-value=4.7e-13 Score=92.98 Aligned_cols=73 Identities=32% Similarity=0.551 Sum_probs=58.1
Q ss_pred CCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCCh
Q psy1306 21 PKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNI 94 (109)
Q Consensus 21 ~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~ 94 (109)
..+|||+++|++||+..+... ++...+.++.++||+++++++++.+.++++||+++++||.++...|++++..
T Consensus 11 ~~pPgP~~~p~iG~~~~~~~~-~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~il~~~~~~f~~~~~~ 83 (477)
T 1r9o_A 11 KLPPGPTPLPVIGNILQIGIK-DISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIF 83 (477)
T ss_dssp BCCCCSSSCC-----CCBCHH-HHHHHHHHHHHHHCSEEEEESSSCEEEEECSHHHHHHHHTTTTTTTCEECCC
T ss_pred CCCCCCCCCceeccHhhcCCC-ChHHHHHHHHHHhCCEEEEEECCCcEEEECCHHHHHHHHhcccHhhCCCCcc
Confidence 468999999999999987433 6788999999999999999999889999999999999997776778776643
No 11
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=99.36 E-value=1.5e-12 Score=90.78 Aligned_cols=83 Identities=29% Similarity=0.466 Sum_probs=67.7
Q ss_pred CCCCCCCCCCceeecccccCCCCc--HHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCChhhh
Q psy1306 20 LPKAPMPWALPIIGHLHLLGQYEV--PYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNISRY 97 (109)
Q Consensus 20 ~~~~pgp~~~~~~G~~~~~~~~~~--~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~ 97 (109)
...+|||+++|++||+..+... . +...+.++.++||+++++++++.++++++||+++++|+.++...|++++....+
T Consensus 11 ~~lpPgP~~~p~~G~~~~~~~~-~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~vl~~~~~~f~~~~~~~~~ 89 (481)
T 3czh_A 11 MGFPPGPPGLPFIGNIYSLAAS-SELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLF 89 (481)
T ss_dssp -CCCCCCCCBTTTBHHHHHHHC-SSCHHHHHHHHHHHHCSEEEEEETTEEEEEEESHHHHHHHHTTTTTTTCBCCCCHHH
T ss_pred CCCCCCCCCCcccccHhhcCcc-cCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhhchHhhCCCCCcHHH
Confidence 3678999999999999877542 3 788999999999999999999999999999999999998877788888755444
Q ss_pred hhhhCC
Q psy1306 98 NDLFSG 103 (109)
Q Consensus 98 ~~~~~g 103 (109)
..+.++
T Consensus 90 ~~~~~~ 95 (481)
T 3czh_A 90 MKMTKM 95 (481)
T ss_dssp HHHHTT
T ss_pred HhhcCC
Confidence 444333
No 12
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=99.36 E-value=4.1e-13 Score=92.31 Aligned_cols=80 Identities=16% Similarity=0.256 Sum_probs=67.8
Q ss_pred CCCCCCCC-CceeecccccCCCCcHHHHHHHHHHHcC-CeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCChhhhh
Q psy1306 21 PKAPMPWA-LPIIGHLHLLGQYEVPYQAFKVISKTHG-SIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNISRYN 98 (109)
Q Consensus 21 ~~~pgp~~-~~~~G~~~~~~~~~~~~~~~~~~~~~~g-~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~~ 98 (109)
+.||||++ +|++||+..+.. ++..++.++.++|| ++|++++++.+.++++||+++++++.++...|+.++....+.
T Consensus 3 ~~PPg~p~~~P~iG~~~~~~~--~~~~~~~~~~~~yG~~i~~~~~~~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~~ 80 (450)
T 3gw9_A 3 KLPPVYPVTVPILGHIIQFGK--SPLGFMQECKRQLKSGIFTINIVGKRVTIVGDPHEHSRFFLPRNEVLSPREVYSFMV 80 (450)
T ss_dssp SCCCBCCCCSTTTBTHHHHHH--CHHHHHHHHHHHHTCSEEEEEETTEEEEEECCGGGTHHHHSSCTTTEESTGGGGGGH
T ss_pred CCCCCCCCCcchhccHHHHcc--CHHHHHHHHHHHhCCCeEEEEECCEeEEEEeCHHHHHHHHhCChhhccchhhHHHHH
Confidence 56888665 999999998876 68889999999999 999999999999999999999999988877888877555554
Q ss_pred hhhC
Q psy1306 99 DLFS 102 (109)
Q Consensus 99 ~~~~ 102 (109)
.+++
T Consensus 81 ~~~g 84 (450)
T 3gw9_A 81 PVFG 84 (450)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 4443
No 13
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=99.36 E-value=4.2e-13 Score=92.84 Aligned_cols=72 Identities=15% Similarity=0.256 Sum_probs=62.6
Q ss_pred cCCCCCC-CCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 19 FLPKAPM-PWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 19 ~~~~~pg-p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
..+.||| |+++|++||+..+.. ++..++.++.++||+++++++++.+.+++++|++++++|.++...++.++
T Consensus 9 ~~~~PPg~P~~lP~iG~l~~~~~--~~~~~~~~~~~~yG~v~~l~l~g~~~vvv~~~~~~~~il~~~~~~~~~~~ 81 (461)
T 3i3k_A 9 GVKSPPYIFSPIPFLGHAIAFGK--SPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAED 81 (461)
T ss_dssp -CCCCCBCCCSSTTTBTHHHHHH--CHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHH
T ss_pred CCCCCCCCCCCCCccccHHhhcc--CHHHHHHHHHHHhCCEEEEEecCceEEEEeChHHHHHHHhccccccccch
Confidence 4467999 889999999998875 68889999999999999999999999999999999999988766665543
No 14
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=99.33 E-value=3.3e-12 Score=88.44 Aligned_cols=78 Identities=19% Similarity=0.269 Sum_probs=65.6
Q ss_pred HhhcCCCCCCCCCCceeecccccCC---CCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 16 VISFLPKAPMPWALPIIGHLHLLGQ---YEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 16 ~~~~~~~~pgp~~~~~~G~~~~~~~---~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
...++..+|||+++|++||+..+.. ..+++..+.++.++||+++++++|+.+.|+++||+++++|+.++ ..|++++
T Consensus 19 ~~~pl~~~PGP~~~p~iG~~~~~~~~~~~~~~~~~~~~l~~~YG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~~~~~r~ 97 (482)
T 3k9v_A 19 ETRNVTDLPGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRTE-SAHPQRL 97 (482)
T ss_dssp CCEEGGGCCCSCCCTTTBTHHHHHHTTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTC-CSSCCCC
T ss_pred ccCCCCCCCCCCCCCccccHHHHhccCCcccHHHHHHHHHHHcCCEEEEccCCCCEEEEcCHHHHHHHHHhc-CCCCCCC
Confidence 3446678999999999999987731 12578899999999999999999999999999999999999874 5788877
Q ss_pred Ch
Q psy1306 93 NI 94 (109)
Q Consensus 93 ~~ 94 (109)
..
T Consensus 98 ~~ 99 (482)
T 3k9v_A 98 EI 99 (482)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 15
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=99.33 E-value=1.9e-12 Score=90.26 Aligned_cols=76 Identities=13% Similarity=0.108 Sum_probs=61.1
Q ss_pred cCCCCCCCCCCceeecccccCCC--CcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCChhh
Q psy1306 19 FLPKAPMPWALPIIGHLHLLGQY--EVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNISR 96 (109)
Q Consensus 19 ~~~~~pgp~~~~~~G~~~~~~~~--~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~ 96 (109)
+.+.||||+++|++||+..+... ......+.+|.++||+++++++|+.+.++++||+++++||.++ .|++++....
T Consensus 43 ~~~~pPGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~il~~~--~~~~r~~~~~ 120 (503)
T 3s79_A 43 GTSSIPGPGYCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIMKHN--HYSSRFGSKL 120 (503)
T ss_dssp --CCCCSCCCCSSSHHHHHHHHHHHHCHHHHHHHHHHHSCSEEEEESSSSEEEEECCHHHHHHHHHSG--GGCCCCCCHH
T ss_pred ccCCCCCCCCCceeeehhccccccccchhHHHHHHHHHhCCeEEEEeCCccEEEECCHHHHHHHHhcC--CCCCcchhhh
Confidence 45789999999999999877431 1344578889999999999999999999999999999999643 6777765443
No 16
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=99.29 E-value=7.2e-13 Score=92.42 Aligned_cols=71 Identities=18% Similarity=0.276 Sum_probs=60.3
Q ss_pred CCCCCCCCC-CceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 20 LPKAPMPWA-LPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 20 ~~~~pgp~~-~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
...||||++ +|++||+..+.. ++..++.++.++||++|++++++.++++++||+++++++.++...++.++
T Consensus 17 ~~~PPgp~~~~P~iG~~~~~~~--~~~~~~~~l~~kYG~i~~v~lg~~~~vvv~~p~~~~~il~~~~~~~~~~~ 88 (498)
T 3b6h_A 17 PGEPPLDLGSIPWLGYALDFGK--DAASFLTRMKEKHGDIFTILVGGRYVTVLLDPHSYDAVVWEPRTRLDFHA 88 (498)
T ss_dssp TTCCCEECCSSTTTBTHHHHHH--CHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHTCCTTTEECCH
T ss_pred CCCCCCCCCCCcchhhHHHhcc--CHHHHHHHHHHHcCCeEEEEECCeeEEEEcCHHHHHHHHhCccccCCchh
Confidence 356899988 899999998865 68889999999999999999999999999999999999976653244443
No 17
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=99.24 E-value=2.6e-12 Score=89.51 Aligned_cols=65 Identities=18% Similarity=0.271 Sum_probs=59.0
Q ss_pred cCCCCCCCCC-CceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCC
Q psy1306 19 FLPKAPMPWA-LPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKA 85 (109)
Q Consensus 19 ~~~~~pgp~~-~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~ 85 (109)
..+.||||++ +|++||+..+.. ++..++.++.++||+++++++++.+.+++++|+++++||.++.
T Consensus 11 ~~~~PPgp~~~lPliG~~~~~~~--~p~~~~~~l~~~yGpv~~~~lg~~~~vvv~~p~~v~~vl~~~~ 76 (491)
T 3v8d_A 11 QTGEPPLENGLIPYLGCALQFGA--NPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGK 76 (491)
T ss_dssp CTTSCCEEEEEESSTTTTGGGTC--CHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHSCCT
T ss_pred CCCCCCCCCCCcceeccHHHHhc--CHHHHHHHHHHHcCCceEEEECCEEEEEEcCHHHHHHHHhcCC
Confidence 3467999998 799999999977 7999999999999999999999999999999999999997653
No 18
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*
Probab=99.21 E-value=3.7e-11 Score=83.23 Aligned_cols=72 Identities=14% Similarity=0.148 Sum_probs=61.9
Q ss_pred CCCCC-CCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCCh
Q psy1306 21 PKAPM-PWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNI 94 (109)
Q Consensus 21 ~~~pg-p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~ 94 (109)
+.||| |.++|++||+..+.. ++...+.++.++||+++.+++++.++++++||+++++|+.++...|+.++..
T Consensus 4 ~~PPg~p~~~P~iG~~~~~~~--~~~~~~~~l~~~yG~v~~~~~~~~~~~vv~~~~~~~~il~~~~~~~~~~~~~ 76 (455)
T 2cib_A 4 VALPRVSGGHDEHGHLEEFRT--DPIGLMQRVRDELGDVGTFQLAGKQVVLLSGSHANEFFFRAGDDDLDQAKAY 76 (455)
T ss_dssp -CCCBCSCCCBTTBTHHHHTT--CHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEECTTSC
T ss_pred CCCCCCCCCCCCccCHHHHhh--ChHHHHHHHHHHcCCEEEEEeCCceEEEECCHHHHHHHHhcCccccCcccch
Confidence 46787 778999999998865 6888999999999999999999989999999999999998766677776643
No 19
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=99.20 E-value=2.2e-11 Score=84.73 Aligned_cols=79 Identities=27% Similarity=0.375 Sum_probs=62.3
Q ss_pred hcCCCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCChhhh
Q psy1306 18 SFLPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNISRY 97 (109)
Q Consensus 18 ~~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~ 97 (109)
...+.||||++ +.++... +++..+.+|.++||+++++++|+.+.++++||+++++||.++...|++++.....
T Consensus 26 ~~~~lPPGP~~------l~~~~~~-~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~~f~~r~~~~~~ 98 (496)
T 3qz1_A 26 RNLHLPPLVPG------FLHLLQP-NLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRPQIPSY 98 (496)
T ss_dssp ---CCCCBCSC------SCTTSSS-CHHHHHHHGGGTSCSEEEECSSSSCEEEECSTTHHHHTTTTSCSTTCBCCCCTTT
T ss_pred cCCCCCcCCcc------ccccCCC-cchHHHHHHHHHhCCEEEEEeCCcCEEEECCHHHHHHHHHhCcHhhCCCCCcchH
Confidence 34578899877 4444443 7889999999999999999999999999999999999999888889888876555
Q ss_pred hhhhCC
Q psy1306 98 NDLFSG 103 (109)
Q Consensus 98 ~~~~~g 103 (109)
.....|
T Consensus 99 ~~~~~~ 104 (496)
T 3qz1_A 99 KLVSQR 104 (496)
T ss_dssp TTSCTT
T ss_pred HHhcCC
Confidence 444333
No 20
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=99.12 E-value=1.7e-11 Score=85.21 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=56.5
Q ss_pred CCCCCCCC-CceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCC
Q psy1306 21 PKAPMPWA-LPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKA 85 (109)
Q Consensus 21 ~~~pgp~~-~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~ 85 (109)
..||||++ +|++||+..+.. ++..++.+++++||++|++++++.++++++||+++++|+.++.
T Consensus 13 ~~pPgp~~~~P~iG~~~~~~~--~~~~~~~~~~~kyG~i~~~~~g~~~~vvv~dp~~~~~il~~~~ 76 (491)
T 3dax_A 13 GEPPLENGLIPYLGCALQFGA--NPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGK 76 (491)
T ss_dssp TCCCEEEEEESCTTTTGGGTC--CHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGTHHHHSCCT
T ss_pred CCCCcCCCcccchhhHHHHhh--CHHHHHHHHHHhcCCeEEEEECCeEEEEEcChHHHHHHHcCCc
Confidence 46788887 899999998876 6888999999999999999999999999999999999997654
No 21
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=99.11 E-value=1.5e-11 Score=85.14 Aligned_cols=65 Identities=20% Similarity=0.267 Sum_probs=57.8
Q ss_pred cCCCCCCCCC-CceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCC
Q psy1306 19 FLPKAPMPWA-LPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKA 85 (109)
Q Consensus 19 ~~~~~pgp~~-~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~ 85 (109)
....||||++ +|++||+..+.. ++..++.++.++||+++.+++++.+++++++|+++++|+.++.
T Consensus 16 ~~~~pPgp~~~~P~iG~~~~~~~--~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~ 81 (475)
T 3b98_A 16 RRNEPPLDKGMIPWLGHALEFGK--DAAKFLTRMKEKHGDIFTVRAAGLYITVLLDSNCYDAVLSDVA 81 (475)
T ss_dssp CTTCCCEECCSSTTTBTHHHHHH--CHHHHHHHHHHHHCSEEEEEETTEEEEEECCTTTHHHHHTCTT
T ss_pred CCCCCCCCCCCcchHHhHHHHhh--CHHHHHHHHHHHhCCeEEEEECCceEEEEeCHHHHHHHHcCcc
Confidence 3467899988 899999998865 6888999999999999999999999999999999999997653
No 22
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=99.10 E-value=1.9e-10 Score=79.96 Aligned_cols=62 Identities=24% Similarity=0.246 Sum_probs=55.7
Q ss_pred CCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhh
Q psy1306 21 PKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 83 (109)
Q Consensus 21 ~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~ 83 (109)
+.+|||+++|++||+..+... +++..+.++.++||+++++++++.+.++++||+++++|+.+
T Consensus 3 ~~~PGP~~~p~iG~l~~~~~~-~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~~~~~~~il~~ 64 (470)
T 2ij2_A 3 KEMPQPKTFGELKNLPLLNTD-KPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDE 64 (470)
T ss_dssp CCCCCCCCCGGGTTGGGGCSS-CHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCT
T ss_pred CCCCCCCCCCccccHHHHhcc-cchHHHHHHHHHhCCeEEEecCCccEEEECCHHHHHHHHhh
Confidence 578999999999999988644 67888889999999999999998899999999999999954
No 23
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*
Probab=99.09 E-value=5.2e-11 Score=82.26 Aligned_cols=70 Identities=20% Similarity=0.210 Sum_probs=58.8
Q ss_pred hcCCCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCC
Q psy1306 18 SFLPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDG 90 (109)
Q Consensus 18 ~~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~ 90 (109)
++.+.+|||+++|++||+..+.. ++. ++.++.++||+++++++++.+.++++||+++++|+.++...|+.
T Consensus 9 ~~~~~pPgp~~~P~iG~~~~~~~--~~~-~~~~~~~~yg~v~~~~~~g~~~vvv~~~~~~~~il~~~~~~~~~ 78 (444)
T 2ve3_A 9 NSLPIPPGDFGLPWLGETLNFLN--DGD-FGKKRQQQFGPIFKTRLFGKNVIFISGALANRFLFTKEQETFQA 78 (444)
T ss_dssp CCCCCCCCCCCBTTTBTHHHHHH--CTT-HHHHHHHHHCSSEEEEETTEEEEEECSHHHHHHHTSSCTTTEEE
T ss_pred CCCCCCCCCCCCCccccHHHHhc--CcH-HHHHHHHHcCCeEEEeeCCCCEEEEcCHHHHHHHHhCCCccccc
Confidence 35578999999999999987765 445 77789999999999998888899999999999999876555663
No 24
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A*
Probab=99.07 E-value=6.3e-11 Score=82.16 Aligned_cols=66 Identities=21% Similarity=0.319 Sum_probs=56.3
Q ss_pred CCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCC
Q psy1306 21 PKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGR 91 (109)
Q Consensus 21 ~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r 91 (109)
..||||+++|++||+..+.. ++..++.++.+ ||+++++++++.++++++||+++++|+.++ .|..+
T Consensus 23 eppPgP~~~P~iG~~~~~~~--~p~~~~~~l~~-yGpv~~~~~g~~~~~vv~~~~~i~~il~~~--~~~~~ 88 (467)
T 3dbg_A 23 EPPVAGGGVPLLGHGWRLAR--DPLAFMSQLRD-HGDVVRIKLGPKTVYAVTNPELTGALALNP--DYHIA 88 (467)
T ss_dssp BCCEECCCCSTTHHHHHHHH--CHHHHHHHHGG-GCSEEEEEETTEEEEEECSHHHHHHHHHCT--TC---
T ss_pred CCCCCCCCCCcccchHHhcc--CHHHHHHHHHH-hCCEEEEEeCCccEEEECCHHHHHHHHhCc--Ccccc
Confidence 45789999999999998876 68888888887 999999999999999999999999999876 56333
No 25
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=98.97 E-value=6.8e-10 Score=77.08 Aligned_cols=76 Identities=18% Similarity=0.095 Sum_probs=60.5
Q ss_pred hcCCCCCCCCCCceeecccccCC---CCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCCh
Q psy1306 18 SFLPKAPMPWALPIIGHLHLLGQ---YEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNI 94 (109)
Q Consensus 18 ~~~~~~pgp~~~~~~G~~~~~~~---~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~ 94 (109)
.+++.+|||+..++. |+..+.. ...++..+.++.++||+++++++|+.+.|+++||+++++|+.++ ..|++|+..
T Consensus 6 ~pL~~~PGP~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~kYG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~~f~~r~~~ 83 (487)
T 3n9y_A 6 RPFNEIPSPGDNGWL-NLYHFWRETGTHKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVALLFKSE-GPNPERFLI 83 (487)
T ss_dssp BCGGGSCCSCSCHHH-HHHHHHHHTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHHTC-CSSCCCCCC
T ss_pred CCHhhCCCCCCCChh-hHHHHHhcCCCcchhHHHHHHHHHcCceeeccCCCCCEEEEcCHHHHHHHHHhC-CCCCCCCCC
Confidence 355679999887765 6665421 12577889999999999999999999999999999999999766 478888754
Q ss_pred h
Q psy1306 95 S 95 (109)
Q Consensus 95 ~ 95 (109)
.
T Consensus 84 ~ 84 (487)
T 3n9y_A 84 P 84 (487)
T ss_dssp H
T ss_pred c
Confidence 3
No 26
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=98.93 E-value=4e-10 Score=77.99 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=49.6
Q ss_pred cCCCCCCCCCCceeeccc-ccCCCCcHHHHHHHHHHHcCCeeEEec-CCccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 19 FLPKAPMPWALPIIGHLH-LLGQYEVPYQAFKVISKTHGSIFRLKL-GVVPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 19 ~~~~~pgp~~~~~~G~~~-~~~~~~~~~~~~~~~~~~~g~i~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
..+.+|||+++|++|++. .+.. ++...+.++ ++||+++++++ ++.+.++++||+++++||.++ .|++++
T Consensus 24 ~~~~~PGP~~~p~lG~~~~~~~~--~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~ 94 (436)
T 2cd8_A 24 TQQGTTASPPVLDLGALGQDFAA--DPYPTYARL-RAEGPAHRVRTPEGDEVWLVVGYDRARAVLADP--RFSKDW 94 (436)
T ss_dssp ----------CCBHHHHHHHHHH--CCHHHHHHH-HTTCSEEEEECSSCCEEEEECSHHHHHHHHHCT--TEECCG
T ss_pred hccCCCCCCccccCCCCCccccc--ChHHHHHHH-HHhCCeeeeccCCCCeEEEEcCHHHHHHHHcCC--CCcccc
Confidence 346799999999999986 3433 677888888 89999999998 778899999999999999865 677665
No 27
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Probab=98.73 E-value=3.3e-09 Score=72.25 Aligned_cols=63 Identities=16% Similarity=0.125 Sum_probs=54.6
Q ss_pred CCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 25 MPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 25 gp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
+++..|++||+..+.. ++..++.++.++||++++ ++++.+.++++||+++++|+.++ .|++++
T Consensus 3 ~~~~~p~iGnl~~~~~--~p~~~~~~l~~~yGpv~~-~~g~~~~vvv~~~~~i~~il~~~--~f~~~~ 65 (389)
T 1n97_A 3 RLSLREAWPYLKDLQQ--DPLAVLLAWGRAHPRLFL-PLPRFPLALIFDPEGVEGALLAE--GTTKAT 65 (389)
T ss_dssp ECCHHHHHHHHHHHHH--CHHHHHHHHHHHCSEEEE-CCTTCCEEEECSHHHHHHHHHCT--TEECCS
T ss_pred ccccccccccHHHHhh--ChHHHHHHHHHHcCCeeE-ecCCccEEEECCHHHHHHHHhcC--CCCCCh
Confidence 3456789999988865 688899999999999999 99888999999999999999876 787776
No 28
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Probab=98.55 E-value=2.8e-08 Score=69.24 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=52.0
Q ss_pred hhcCCCCCCCCCCceeecccccC----CCCcHHHHHHHHHHHcCC-eeEEecCCccE-------EEEeCHHHHHHHHh
Q psy1306 17 ISFLPKAPMPWALPIIGHLHLLG----QYEVPYQAFKVISKTHGS-IFRLKLGVVPA-------IVVNGLENIKEVLF 82 (109)
Q Consensus 17 ~~~~~~~pgp~~~~~~G~~~~~~----~~~~~~~~~~~~~~~~g~-i~~~~~~~~~~-------v~i~~p~~~~~il~ 82 (109)
..+.+.||||.++|++|++..+. .. ++..++.++.++||+ ||++++++.++ +++.+++..+.++.
T Consensus 24 ~~p~~~pPGp~g~P~iG~~~~~~~~~~~~-~~~~f~~~~~~kyG~~Vf~~~l~~~~~vv~~p~~v~~~~~~~~~~l~~ 100 (495)
T 3dsk_A 24 DLPIRNIPGNYGLPIVGPIKDRWDYFYDQ-GAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLDGKSFPVLFD 100 (495)
T ss_dssp CCCBCCCCCCCCSTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHTCSEEEEECSCCTTTCSCCEEEEECSTTTGGGGGC
T ss_pred CCCCCCCCCCCCCCccchHHHHHHHHHhc-CcHHHHHHHHHHhCCceEeecCCCCCCccCCCCEEEEeCCcceeeecc
Confidence 34567899999999999998764 23 788999999999999 99999988877 56677766655553
No 29
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A {Amycolatopsis orientalis} SCOP: a.104.1.1
Probab=98.42 E-value=2.4e-07 Score=63.43 Aligned_cols=63 Identities=19% Similarity=0.223 Sum_probs=50.4
Q ss_pred CCCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEe----c-CC-ccEEEEeCHHHHHHHH-hhCCCCCCCCC
Q psy1306 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLK----L-GV-VPAIVVNGLENIKEVL-FVKATDFDGRP 92 (109)
Q Consensus 20 ~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~----~-~~-~~~v~i~~p~~~~~il-~~~~~~~~~r~ 92 (109)
.+.||||+++|+. +.. ++...+.++ ++||++++++ + ++ .+.++++||+++++|| .++ .|++++
T Consensus 9 ~~lppgp~~~p~~-----~~~--~p~~~~~~l-~~yGpv~~~~~~~~~~~~~~~~vvv~~~~~i~~vl~~~~--~~~~~~ 78 (406)
T 1ued_A 9 APLLREPANFQLR-----TNC--DPHEDNFGL-RAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHE--HFTTRP 78 (406)
T ss_dssp CCEEECCTTTTCE-----ETT--EECHHHHHH-HTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCS--SEECCC
T ss_pred CCCcccCcccCCC-----CCC--CcHHHHHHH-HHhCCeeeecccccCCCCCccEEEEcCHHHHHHHHhhCc--cccccc
Confidence 4567889888876 333 677788899 9999999999 6 78 8999999999999999 543 355554
No 30
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A*
Probab=98.41 E-value=1.8e-07 Score=64.05 Aligned_cols=63 Identities=13% Similarity=0.172 Sum_probs=47.7
Q ss_pred CCCCCCCceeecccccCCCCcHHHHHHHHHHHc-CCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 23 APMPWALPIIGHLHLLGQYEVPYQAFKVISKTH-GSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 23 ~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~-g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
+||| |++||+..+.. ++..++.++.++| |+++++..++.+.+++++|++++ ++.++ +.|+.++
T Consensus 4 pPg~---P~iG~~~~~~~--~p~~~~~~l~~~y~gpv~~~~~~g~~~~vv~~~~~~~-~l~~~-~~f~~~~ 67 (415)
T 3awm_A 4 TPHT---KGPDETLSLLA--DPYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAE-IFYDT-TRFEREG 67 (415)
T ss_dssp --------CCCCHHHHHH--STTTHHHHHHHHHTSSEEEEEETTEEEEEEESHHHHH-HHTCT-TTEECTT
T ss_pred CCCC---CccchHHHHHh--ChHHHHHHHHHHhCCCeEEEecCCCcEEEEeCHHHHH-HHhcc-ccccccc
Confidence 5554 89999988765 6778899999999 79999998888899999999986 76544 4676554
No 31
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR, atomic resolutio structural genomics/proteomics initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum} SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A* 1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A* 1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Probab=98.37 E-value=5.8e-07 Score=61.31 Aligned_cols=57 Identities=16% Similarity=0.054 Sum_probs=42.5
Q ss_pred CCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecC-CccEEEEeCHHHHHHHHhhC
Q psy1306 22 KAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLG-VVPAIVVNGLENIKEVLFVK 84 (109)
Q Consensus 22 ~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-~~~~v~i~~p~~~~~il~~~ 84 (109)
.||||+++|++|++.. ++...+.++. +||+++++.++ +.+.++++++++++++|.++
T Consensus 2 ~pPGp~~~P~~g~~~~-----~p~~~~~~l~-~~Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~ 59 (404)
T 1jfb_A 2 MASGAPSFPFSRASGP-----EPPAEFAKLR-ATNPVSQVKLFDGSLAWLVTKHKDVCFVATSE 59 (404)
T ss_dssp ----CCBSSCCCSSTT-----SCCTHHHHHH-HHCSEEEEECTTSCEEEEECSHHHHHHHHHCT
T ss_pred CCCCCCCCCCCCCcCC-----CccHHHHHHH-HhCCeeeeecCCCCceEEEecHHHHHHHHcCC
Confidence 4899999999999764 3455667775 58999998864 56677789999999999875
No 32
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Probab=98.36 E-value=2.8e-07 Score=63.07 Aligned_cols=60 Identities=17% Similarity=0.107 Sum_probs=48.7
Q ss_pred CCceeecccccCCCCcHHHHHHHHHHHcC-CeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCC
Q psy1306 28 ALPIIGHLHLLGQYEVPYQAFKVISKTHG-SIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGR 91 (109)
Q Consensus 28 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~g-~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r 91 (109)
+.|++||+..+.. ++..++.++.++|| +++++.+++.+.+++++|++++.++ +. +.|+.+
T Consensus 7 g~P~lG~~~~~~~--~p~~~~~~l~~~yg~pv~~~~~~g~~~v~v~~~~~~~~l~-~~-~~~~~~ 67 (417)
T 1izo_A 7 HDKSLDNSLTLLK--EGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFY-DT-DRFQRQ 67 (417)
T ss_dssp BCCCTTHHHHHHH--HGGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHT-CT-TTEECT
T ss_pred CCCccchHHHHhh--CcHHHHHHHHHHhCCCeEEeecCCccEEEECCHHHHHHHh-cc-cccccc
Confidence 3489999998876 68889999999998 8999998888999999999997544 33 456554
No 33
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A*
Probab=98.25 E-value=2e-06 Score=58.93 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=47.9
Q ss_pred CCCCCCCCCceeecccccCCCCcHHHHHHHHHHHc-CCeeEEec-CCccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 21 PKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTH-GSIFRLKL-GVVPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 21 ~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~-g~i~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
..+|+|+..|.+.....+.. ++...+.++ ++| |+++++++ ++.+.+++++|+++++||.++ .|+.++
T Consensus 5 ~~~~~~~~~P~~~~~~~~~~--~p~~~~~~l-~~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~~~~~~ 73 (412)
T 2zbx_A 5 ATTPQTTDAPAFPSNRSCPY--QLPDGYAQL-RDTPGPLHRVTLYDGRQAWVVTKHEAARKLLGDP--RLSSNR 73 (412)
T ss_dssp ---CCCCSSCBSSCCCSSTT--SCCHHHHHH-HHSSSSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEECCT
T ss_pred CCCCCCCCCCCCCCCchhcc--ChHHHHHHH-HhcCCCeEeeccCCCCcEEEEecHHHHHHHHcCc--ccccCc
Confidence 45677777775522222333 677888898 778 99999997 788999999999999999764 344443
No 34
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=98.13 E-value=4.6e-06 Score=57.38 Aligned_cols=48 Identities=19% Similarity=0.322 Sum_probs=41.9
Q ss_pred cHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 43 VPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
.++..+.+|.++||+++++++++.+.++++||+++++||.++ .|..++
T Consensus 11 ~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~p~~~~~il~~~--~~~~~~ 58 (456)
T 3mdm_A 11 VLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMST--KYNKDS 58 (456)
T ss_dssp CHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTCT--TSCCCH
T ss_pred hHHHHHHHHHHHhCCeEEEEeCCCCEEEECCHHHHHHHHhhc--cccccc
Confidence 578889999999999999999999999999999999999643 565554
No 35
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A {Pseudomonas SP} SCOP: a.104.1.1
Probab=97.95 E-value=5.2e-06 Score=57.14 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=49.5
Q ss_pred CCCCCCCCCceeecccccC---C-CCcHHHHHHHHHHHcCCeeEEec-CCccEEEEeCHHHHHHHHhhCCCCCCCCCC
Q psy1306 21 PKAPMPWALPIIGHLHLLG---Q-YEVPYQAFKVISKTHGSIFRLKL-GVVPAIVVNGLENIKEVLFVKATDFDGRPN 93 (109)
Q Consensus 21 ~~~pgp~~~~~~G~~~~~~---~-~~~~~~~~~~~~~~~g~i~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~~r~~ 93 (109)
+.||| ++|++.... . . ++...+.++.+ ||+++++++ |+.+.++++++++++++|.++ +.|++++.
T Consensus 6 ~~pp~-----~~g~l~~~~~~~~~~-~p~~~~~~l~~-~gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~-~~fs~r~~ 75 (428)
T 1cpt_A 6 TIPEH-----IARTVILPQGYADDE-VIYPAFKWLRD-EQPLAMAHIEGYDPMWIATKHADVMQIGKQP-GLFSNAEG 75 (428)
T ss_dssp CSCHH-----HHHHHHSSGGGGCHH-HHHHHHHHHHH-HCSEEEECCTTSCCEEEECSHHHHHHHHHCT-TTEESSSS
T ss_pred ccchh-----hhcccCChhhhcccC-CccHHHHHHHH-hCCeeeccccCCCCeEEEccHHHHHHHHcCc-hhccCccc
Confidence 45666 788765442 1 2 57778888876 699999997 678999999999999999754 57887764
No 36
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Probab=97.92 E-value=2e-05 Score=53.83 Aligned_cols=48 Identities=15% Similarity=0.233 Sum_probs=42.3
Q ss_pred cHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCC
Q psy1306 43 VPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPN 93 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~ 93 (109)
++...+.++ ++||+++++++++.+.+++++|+++++||.++ .|++++.
T Consensus 15 ~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~ 62 (404)
T 1z8o_A 15 DWYRTYAEL-RETAPVTPVRFLGQDAWLVTGYDEAKAALSDL--RLSSDPK 62 (404)
T ss_dssp SHHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHHCT--TEECCTT
T ss_pred CcHHHHHHH-HhcCCeeeecCCCceEEEEcCHHHHHHHHcCC--Ccccccc
Confidence 688889999 89999999999889999999999999999865 6777653
No 37
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Probab=97.91 E-value=1.4e-05 Score=54.65 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=48.8
Q ss_pred CCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEec-CCcc-EEEEeCHHHHHHHHhhCCCCCCCCCC
Q psy1306 21 PKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKL-GVVP-AIVVNGLENIKEVLFVKATDFDGRPN 93 (109)
Q Consensus 21 ~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~-~~~~-~v~i~~p~~~~~il~~~~~~~~~r~~ 93 (109)
+.+|+|+.+|+.++ ... ++..++.++. +||+++++++ ++.+ .+++++|+++++||.+ ..|++++.
T Consensus 8 ~~~~~~~~~p~~~~---~~~--~p~~~~~~l~-~~Gpv~~~~~~~g~~p~~vv~~~~~v~~vl~~--~~f~~~~~ 74 (406)
T 1s1f_A 8 QAVPPVRDWPAVDL---PGS--DFDPVLTELM-REGPVTRISLPNGEGWAWLVTRHDDVRLVTND--PRFGREAV 74 (406)
T ss_dssp CCSCCEEECCCCCC---CTT--CCCHHHHHHH-HHCSEEEEECSBSBSCEEEECSHHHHHHHHTC--TTEESTTT
T ss_pred hhccCCCCCCCCcc---ccc--CchHHHHHHH-hcCCeeeeccCCCcccEEEEcCHHHHHHHHcC--CCccCCcC
Confidence 56677777777665 223 5667777774 6899999996 5665 9999999999999975 36777654
No 38
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A*
Probab=97.86 E-value=1.8e-06 Score=59.67 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=39.3
Q ss_pred hcCCCCCCCCCCceeecccccCC---CC-cHHHHHHHHHHHcCC-eeEEecCCc
Q psy1306 18 SFLPKAPMPWALPIIGHLHLLGQ---YE-VPYQAFKVISKTHGS-IFRLKLGVV 66 (109)
Q Consensus 18 ~~~~~~pgp~~~~~~G~~~~~~~---~~-~~~~~~~~~~~~~g~-i~~~~~~~~ 66 (109)
.+++.+|||.++|++|++..+.. .. ++..++.++.++||+ +|++++++.
T Consensus 6 ~Pl~~iPGp~g~P~iG~~~~~~~~~~~~g~~~~~~~~~~~kyG~~vf~~~~~~~ 59 (473)
T 3dan_A 6 KPLREIPGSYGIPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPG 59 (473)
T ss_dssp SCBCCCCCCCCSTTHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSEEEEECTTC
T ss_pred CCCCCCCCCCCCcchhhHHHHHHHHHhhcCchHHHHhHHHHhCCeEEEecCCCC
Confidence 35678999999999999987531 12 577889999999999 999998643
No 39
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Probab=97.83 E-value=3.3e-05 Score=53.28 Aligned_cols=68 Identities=13% Similarity=0.172 Sum_probs=48.0
Q ss_pred CCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEe--------cCCccEEEEeCHHHHHHHHhhCCCCCCCCCC
Q psy1306 22 KAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLK--------LGVVPAIVVNGLENIKEVLFVKATDFDGRPN 93 (109)
Q Consensus 22 ~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~--------~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~ 93 (109)
.|+.|..++++........ ++..++..+ ++||+++++. +|+.+.+++++++++++||.++ ..|+.++.
T Consensus 19 ~p~~~~~~~~~~~~~~~~~--~p~~~~~~l-r~~gPv~~~~~~~g~~~~lG~~~~~vv~~~~~v~~vl~~~-~~fs~~~~ 94 (433)
T 3ivy_A 19 SPNLPPGFDFTDPAIYAER--LPVAEFAEL-RSAAPIWWNGQDPGKGGGFHDGGFWAITKLNDVKEISRHS-DVFSSYEN 94 (433)
T ss_dssp -CCCCTTCCTTCHHHHTTC--CCHHHHHHH-HHHCSEEEEECCTTCSTTCCSSEEEEECSHHHHHHHHHCT-TTEESTTT
T ss_pred CCCCCCCCCCCCHHHhhcC--CccHHHHHH-HhcCCEEecccccccccccCCCCEEEEecHHHHHHHHcCh-hhccCCcc
Confidence 4555555555443332222 577888888 7799999998 4457899999999999999654 56877664
No 40
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Probab=97.80 E-value=3.6e-05 Score=52.89 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=49.9
Q ss_pred cCCCCCCCCCCcee--ecccccCC---CCcHHHHHHHHHHHcC--CeeEEe-cCCccEEEEeCHHHHHHHHhhCCCCCCC
Q psy1306 19 FLPKAPMPWALPII--GHLHLLGQ---YEVPYQAFKVISKTHG--SIFRLK-LGVVPAIVVNGLENIKEVLFVKATDFDG 90 (109)
Q Consensus 19 ~~~~~pgp~~~~~~--G~~~~~~~---~~~~~~~~~~~~~~~g--~i~~~~-~~~~~~v~i~~p~~~~~il~~~~~~~~~ 90 (109)
....||+|++.|.. +.+..+.. ..++...+.++. +|| ++++++ ++ +.+++++++++++||.+ .+.|++
T Consensus 9 ~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~p~~~~~~l~-~~G~~pv~~~~~~g--~~vvv~~~~~v~~vl~~-~~~f~~ 84 (415)
T 2zwu_A 9 NANLAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQ-ESNVPDLVWTRCNG--GHWIATRGQLIREAYED-YRHFSS 84 (415)
T ss_dssp --CCCCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHHGGG-STTSCSEEEECGGG--CEEEECSHHHHHHHHHC-TTTEET
T ss_pred ccccCCCCCCCCcccccccCcCChhhcccChHHHHHHHH-hcCCCCeEEecCCC--CeEEEcCHHHHHHHHcC-ccccCC
Confidence 44678889887764 43322111 015778888885 789 999998 55 68999999999999964 457888
Q ss_pred CC
Q psy1306 91 RP 92 (109)
Q Consensus 91 r~ 92 (109)
++
T Consensus 85 ~~ 86 (415)
T 2zwu_A 85 EC 86 (415)
T ss_dssp TS
T ss_pred Cc
Confidence 76
No 41
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis}
Probab=97.80 E-value=2.7e-05 Score=53.22 Aligned_cols=46 Identities=15% Similarity=0.267 Sum_probs=39.0
Q ss_pred cHHHHHHHHHHHcCCeeEEec-CCccEEEEeCHHHHHHHHhhCCCCCCCC
Q psy1306 43 VPYQAFKVISKTHGSIFRLKL-GVVPAIVVNGLENIKEVLFVKATDFDGR 91 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~~r 91 (109)
+++..+.++ ++||+++++++ ++.+.++++||+++++||.++ .|+++
T Consensus 25 ~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~~~~~ 71 (408)
T 3abb_A 25 QPPKAYEER-RGESPLTQVTLFDGRPAWLITGHAEGRALLVDP--RLSSD 71 (408)
T ss_dssp SCCHHHHHH-CCSSSEEEEECTTSCEEEEECCHHHHHHHHTCT--TEECC
T ss_pred CchHHHHHH-HhcCCeeeeecCCCCcEEEEeCHHHHHHHHcCC--Ccccc
Confidence 677788898 88999999998 788999999999999999764 34444
No 42
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Probab=97.79 E-value=2.8e-05 Score=53.36 Aligned_cols=48 Identities=13% Similarity=0.245 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCC
Q psy1306 43 VPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPN 93 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~ 93 (109)
++..++.++ ++||+++++++++.+.+++++|+++++||.++ .|++++.
T Consensus 21 ~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~ 68 (411)
T 3a4g_A 21 NPHPAYAAL-RAEDPVRKLALPDGPVWLLTRYADVREAFVDP--RLSKDWR 68 (411)
T ss_dssp CCHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHTCT--TEESCGG
T ss_pred CchHHHHHH-HhcCCeeeccCCCCCEEEEecHHHHHHHHhCC--Ccccccc
Confidence 678888888 88999999999888999999999999999765 3877653
No 43
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A*
Probab=97.79 E-value=2.4e-05 Score=52.98 Aligned_cols=51 Identities=14% Similarity=0.311 Sum_probs=41.2
Q ss_pred cHHHHHHHHHHHcCCeeEEecCC----ccEEEEeCHHHHHHHHhhCCCCCCCCCChh
Q psy1306 43 VPYQAFKVISKTHGSIFRLKLGV----VPAIVVNGLENIKEVLFVKATDFDGRPNIS 95 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~~~----~~~v~i~~p~~~~~il~~~~~~~~~r~~~~ 95 (109)
++..++.++ ++||++++++.++ .+.++++||+++++||. +...|++++...
T Consensus 13 ~p~~~~~~l-r~yGpv~~~~~~~~~~g~~~vvv~~~~~v~~vl~-~~~~f~~~~~~~ 67 (384)
T 3oo3_A 13 DPVPEFEEL-QKAGPLHEYDTEPGMDGRKQWLVTGHDEVRAILA-DHERFSSMRPVD 67 (384)
T ss_dssp EECHHHHHH-HHTCSEECCCCC------CEEEECCHHHHHHHHH-CTTTEECSCCCC
T ss_pred ChhHHHHHH-HhcCCeeecccccccCCCCEEEEcCHHHHHHHHh-CchhccCCcccc
Confidence 677888888 5899999999876 89999999999999995 446888877543
No 44
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B*
Probab=97.78 E-value=4.5e-05 Score=51.93 Aligned_cols=49 Identities=18% Similarity=0.235 Sum_probs=42.2
Q ss_pred cHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCC
Q psy1306 43 VPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPN 93 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~ 93 (109)
++..++..+ ++||+++++++++.+.+++++++++++||.++ ..|++++.
T Consensus 14 ~p~~~~~~~-r~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~-~~~~~~~~ 62 (404)
T 3ejb_B 14 NPYSFYDTL-RAVHPIYKGSFLKYPGWYVTGYEETAAILKDA-RFKVRTPL 62 (404)
T ss_dssp CHHHHHHHH-HHHCSEEEEEETTEEEEEECCHHHHHHHHHCT-TEECCCSS
T ss_pred CchHHHHHH-HhhCCEeeccCCCCCEEEEecHHHHHHHHhCc-ccccCccc
Confidence 577788877 57999999999999999999999999999876 57777764
No 45
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A*
Probab=97.72 E-value=4.3e-05 Score=52.03 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=42.5
Q ss_pred cHHHHHHHHHHHc--CCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCCh
Q psy1306 43 VPYQAFKVISKTH--GSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNI 94 (109)
Q Consensus 43 ~~~~~~~~~~~~~--g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~ 94 (109)
++..++.++.++| |++++++.++ +.+++++|+++++||. +.+.|++++..
T Consensus 20 ~p~~~~~~l~~~Y~~Gpv~~~~~~~-~~~vv~~~~~v~~vl~-~~~~f~~~~~~ 71 (398)
T 4fb2_A 20 TPHAFFEALRDEAETTPIGWSEAYG-GHWVVAGYKEIQAVIQ-NTKAFSNKGVT 71 (398)
T ss_dssp SSHHHHHHHHHHHTTCSEEEECGGG-CEEEECSHHHHHHHHT-CCSSEEGGGCS
T ss_pred ChhHHHHHHHhcCCCCCeEEecCCC-CEEEEccHHHHHHHHh-ChhhccCCccc
Confidence 6889999999999 9999999875 6899999999999994 45678776643
No 46
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=97.70 E-value=5.7e-05 Score=51.63 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=37.5
Q ss_pred cHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhC
Q psy1306 43 VPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVK 84 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~ 84 (109)
+++..+.++ ++||+++++++++.+.++++||+++++||.++
T Consensus 16 ~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~ 56 (408)
T 1odo_A 16 DHHTEHRTL-REGGPATWVDVLGVQAWSVSDPVLLKQLLTSS 56 (408)
T ss_dssp THHHHHHHH-HTTCSEEEEEETTEEEEEECCHHHHHHHTTCT
T ss_pred ChHHHHHHH-HHhCCeEEeccCCCCEEEECCHHHHHHHHcCC
Confidence 688899999 99999999998888999999999999999765
No 47
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena}
Probab=97.66 E-value=7e-05 Score=51.37 Aligned_cols=66 Identities=18% Similarity=0.144 Sum_probs=45.3
Q ss_pred cCCCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEec-CCccEEEEeCHHHHHHHHhhCCCCCCCCCC
Q psy1306 19 FLPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKL-GVVPAIVVNGLENIKEVLFVKATDFDGRPN 93 (109)
Q Consensus 19 ~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~~r~~ 93 (109)
.++..+|+.. |+- ..+.. ++..++.++. +||+++++++ ++.+.+++++|+++++||.++ .|++++.
T Consensus 5 ~~~~~~g~~~-~~~---~~~~~--~p~~~~~~l~-~~Gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~ 71 (413)
T 2z36_A 5 VADELAGLEL-PVE---RGCPF--APPAAYERLR-ERAPINKVRLTSGGQAWWVSGHEEARAVLADG--RFSSDKR 71 (413)
T ss_dssp -----CCCEE-CCC---CCBTT--BCCHHHHHHH-HHCSEEEEEETTSCEEEEECSHHHHHHHHHCT--TEECCTT
T ss_pred HHHHhccccC-CCC---ccccc--CchHHHHHHH-HcCCeeEeecCCCceEEEEecHHHHHHHHcCC--CcccCcc
Confidence 3455666643 221 22333 6777888887 6899999997 788999999999999999863 6777653
No 48
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A*
Probab=97.58 E-value=5.7e-05 Score=51.59 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=39.6
Q ss_pred cHHHHHHHHHHHcCCeeEEec-CCccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 43 VPYQAFKVISKTHGSIFRLKL-GVVPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
++...+.++ ++||+++++++ ++.+.+++++++++++||.++ .|++++
T Consensus 20 ~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~ 67 (403)
T 3aba_A 20 LPPDGIADI-RAAAPVTRATFTSGHEAWLVTGYEEVRALLRDS--SFSVQV 67 (403)
T ss_dssp SCCTTHHHH-HHHCSEEEEECTTSCEEEEECCHHHHHHHHHCT--TEESCC
T ss_pred ChhHHHHHH-HhcCCeeeeccCCCceEEEEcCHHHHHHHHcCC--Cccccc
Confidence 566677888 88999999997 789999999999999999864 576663
No 49
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=97.55 E-value=0.00017 Score=49.41 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHHcCCeeEEec-CCccEEEEeCHHHHHHHHhhC
Q psy1306 43 VPYQAFKVISKTHGSIFRLKL-GVVPAIVVNGLENIKEVLFVK 84 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~-~~~~~v~i~~p~~~~~il~~~ 84 (109)
++...+.++ ++||+++++++ ++.+.++++||+++++||.++
T Consensus 18 ~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~ 59 (411)
T 1gwi_A 18 DLDGESARL-RAAGPLAAVELPGGVPVWAVTHHAEAKALLTDP 59 (411)
T ss_dssp CHHHHHHHH-HHTCSEEEEEETTTEEEEEECSHHHHHHHHTCT
T ss_pred ChHHHHHHH-HHhCCeeeeecCCCccEEEEeCHHHHHHHHcCC
Confidence 688888898 89999999997 788999999999999999765
No 50
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis; HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB: 2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Probab=97.55 E-value=6.8e-05 Score=51.54 Aligned_cols=47 Identities=17% Similarity=0.154 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHHcCCeeEEec-CCccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 43 VPYQAFKVISKTHGSIFRLKL-GVVPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
++...+.++ ++||+++++++ ++.+.++++||+++++||.++ .|++++
T Consensus 38 ~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~i~~vl~~~--~f~~~~ 85 (417)
T 2y5n_A 38 TLAGRYGEL-QETEPVSRVRPPYGEEAWLVTRYEDVRAVLGDG--RFVRGP 85 (417)
T ss_dssp CCCHHHHHH-HHHCSEEEEECSBSCCEEEECSHHHHHHHHTCT--TEESGG
T ss_pred CchHHHHHH-HhcCCeEeeccCCCceEEEECCHHHHHHHHcCC--CcccCc
Confidence 677888888 88999999997 789999999999999999764 466654
No 51
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A*
Probab=97.53 E-value=8.1e-05 Score=50.99 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHHcCCeeEEec-CCccEEEEeCHHHHHHHHhhCCCCCCCCCC
Q psy1306 43 VPYQAFKVISKTHGSIFRLKL-GVVPAIVVNGLENIKEVLFVKATDFDGRPN 93 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~~r~~ 93 (109)
++..++.++ ++||+++++++ ++.+.+++++|+++++||.++ .|++++.
T Consensus 27 ~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~ 75 (404)
T 2xbk_A 27 KLSPLLRAL-QDRGPIHRVRTPAGDEAWLVTRHAELKQLLHDE--RIGRTHP 75 (404)
T ss_dssp BCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHTTCT--TEESBCS
T ss_pred CccHHHHHH-HhhCCEeeeccCCCceEEEEcCHHHHHHHHcCC--CCCCCcc
Confidence 577788888 88999999997 788999999999999999764 4766654
No 52
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, AN biosynthesis, TIE-ROD mechanism of action; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Probab=97.51 E-value=0.00011 Score=50.18 Aligned_cols=62 Identities=10% Similarity=0.074 Sum_probs=44.0
Q ss_pred HHhhcCCCCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCC
Q psy1306 15 SVISFLPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPN 93 (109)
Q Consensus 15 ~~~~~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~ 93 (109)
+..++...+|||.. + . ++..++.++.+ ||++ +.++.+.+++++++++++||.++ +.|++++.
T Consensus 13 ~~~~pl~~~PGp~~----~------~--~p~~~~~~l~~-~gpv---~~~~~~~~vv~~~~~v~~vl~~~-~~f~~~~~ 74 (411)
T 2jjn_A 13 RTLTTIDEVPGMAD----E------T--ALLDWLGTMRE-KQPV---WQDRYGVWHVFRHADVQTVLRDT-ATFSSDPT 74 (411)
T ss_dssp ----CCCSCCCSSC----H------H--HHHHHHHHHHH-HCSE---EECTTSCEEECSHHHHHHHHHCT-TTEESCGG
T ss_pred cccCCCCCCCCccc----c------c--ChHHHHHHHHH-hCCc---ccCCCCeEEECCHHHHHHHHcCc-ccccCccc
Confidence 44445566777762 1 2 67778888876 8998 56667899999999999999765 46887764
No 53
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450 fold, structural genomics, PSI, protein structure initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A* 3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Probab=97.51 E-value=0.00012 Score=49.89 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=38.6
Q ss_pred cHHHHHHHHHHHcCCeeEEec-CCccEEEEeCHHHHHHHHhhCCCCCC
Q psy1306 43 VPYQAFKVISKTHGSIFRLKL-GVVPAIVVNGLENIKEVLFVKATDFD 89 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~ 89 (109)
++...+.++ ++||+++++++ ++.+.+++++|+++++||.++ .|+
T Consensus 17 ~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~ 61 (396)
T 1n40_A 17 RIPDAVAEL-RTREPIRKVRTITGAEAWLVSSYALCTQVLEDR--RFS 61 (396)
T ss_dssp SCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEE
T ss_pred CccHHHHHH-HHhCCeeEeecCCCceEEEEecHHHHHHHHhCC--Ccc
Confidence 677888999 89999999997 788999999999999999764 465
No 54
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A*
Probab=97.45 E-value=0.00019 Score=49.34 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHHcCCeeEEecC--CccEEEEeCHHHHHHHHhhCCCCCCCCCC
Q psy1306 43 VPYQAFKVISKTHGSIFRLKLG--VVPAIVVNGLENIKEVLFVKATDFDGRPN 93 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~~--~~~~v~i~~p~~~~~il~~~~~~~~~r~~ 93 (109)
++..++.++.+ ||+++++++| +.+.+++++|+++++||.++ .|++++.
T Consensus 21 ~p~~~~~~l~~-~Gpv~~~~~g~~~~~~~vv~~~~~v~~vl~~~--~f~~~~~ 70 (425)
T 2z3t_A 21 DPYPVYRRYRE-AAPVHRTASGPGKPDTYYVFTYDDVVRVLSNR--RLGRNAR 70 (425)
T ss_dssp CCHHHHHHHHH-HCSEEEECCCSSCCCEEEECSHHHHHHHHHCT--TEESSCC
T ss_pred ChHHHHHHHHh-cCCeEeccccCCCCCeEEEcCHHHHHHHHcCC--Ccccccc
Confidence 56677788764 9999999987 67899999999999999764 7877753
No 55
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A*
Probab=97.38 E-value=0.00029 Score=48.62 Aligned_cols=48 Identities=13% Similarity=-0.011 Sum_probs=39.8
Q ss_pred cHHHHHHHHHHHcCCeeEEecC-------CccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 43 VPYQAFKVISKTHGSIFRLKLG-------VVPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~~-------~~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
++...+.++. +||+++++.++ +.+.+++++|+++++||.++ +.|++++
T Consensus 45 ~p~~~~~~l~-~~Gpv~~~~~~~~~~~~~g~~~vvv~~~~~v~~vl~~~-~~f~~~~ 99 (435)
T 2wm5_A 45 VRDGAFATLR-REAPISFWPTIELPGFVAGNGHWALTKYDDVFYASRHP-DIFSSYP 99 (435)
T ss_dssp HHHHHHHHHH-HHCSEEEECCCCC---CCCCCEEEECSHHHHHHHHHCT-TTEECSS
T ss_pred ChhHHHHHHH-hcCCeEecccccccccCCCCCeEEEcCHHHHHHHHcCc-ccccCcc
Confidence 5677788885 68999999985 66899999999999999875 4688776
No 56
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A* 1pkf_A*
Probab=97.35 E-value=0.00025 Score=48.59 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=38.3
Q ss_pred cHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 43 VPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
++...+.++ ++||++++ + ++.+.+++++++++++||.++. |++++
T Consensus 27 ~p~~~~~~l-~~~Gpv~~-~-~~~~~vvv~~~~~v~~vl~~~~--f~~~~ 71 (419)
T 1q5d_A 27 DPFPAIERL-REATPIFY-W-DEGRSWVLTRYHDVSAVFRDER--FAVSR 71 (419)
T ss_dssp CCHHHHHHH-HHHCSEEE-E-TTTTEEEECSHHHHHHHHTCTT--EECCG
T ss_pred ChHHHHHHH-HhhCCccc-c-CCCCEEEEecHHHHHHHHcCCC--ccccc
Confidence 677888888 68999999 6 6678999999999999998763 88876
No 57
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A*
Probab=97.26 E-value=0.00033 Score=47.99 Aligned_cols=47 Identities=15% Similarity=0.207 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHHcCCeeEEecC-CccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 43 VPYQAFKVISKTHGSIFRLKLG-VVPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~~-~~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
++..++.++.++ |++++++++ +.+.+++++++++++||.++ .|+.++
T Consensus 30 dp~~~~~~l~~~-Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~--~f~~~~ 77 (417)
T 3tyw_A 30 AAPAEYAALRTD-DPVARVTLPTRREAWVVTRYDDVRELLSDP--RVSADI 77 (417)
T ss_dssp SCCTHHHHHHHT-CTEEEEECTTSCEEEEECCHHHHHHHHHCT--TEECCS
T ss_pred CchHHHHHHHhh-CCeeeeecCCCCCeEEEcCHHHHHHHHcCC--CcccCC
Confidence 677888999988 999999986 48899999999999999865 676653
No 58
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A*
Probab=97.26 E-value=0.00084 Score=46.00 Aligned_cols=49 Identities=12% Similarity=0.058 Sum_probs=39.3
Q ss_pred cHHHHHHHHHHHcC-CeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCC
Q psy1306 43 VPYQAFKVISKTHG-SIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPN 93 (109)
Q Consensus 43 ~~~~~~~~~~~~~g-~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~ 93 (109)
++..++..+.+++| +++++..++ +.+++++|+++++||. +.+.|++++.
T Consensus 39 dp~~~~~~lr~~~G~pv~~~~~~~-~~~vv~~~~~v~~vl~-~~~~f~~~~~ 88 (421)
T 3lxh_A 39 GFHEAWKRVQQPDTPPLVWTPFTG-GHWIATRGTLIDEIYR-SPERFSSRVI 88 (421)
T ss_dssp CHHHHHHHHCCTTCCSEEEESSTT-SEEEECSHHHHHHHHT-CTTTEETTCC
T ss_pred ChhHHHHHHHhcCCCCeEeccCCC-CeEEEcCHHHHHHHHc-ChhhccCCcc
Confidence 68888888877655 899998765 5889999999999995 4467887763
No 59
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Probab=97.25 E-value=0.0003 Score=48.26 Aligned_cols=60 Identities=10% Similarity=0.213 Sum_probs=42.8
Q ss_pred eeecccccCCC---CcHHHHHHHHHHHcCCee-----EEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCCh
Q psy1306 31 IIGHLHLLGQY---EVPYQAFKVISKTHGSIF-----RLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNI 94 (109)
Q Consensus 31 ~~G~~~~~~~~---~~~~~~~~~~~~~~g~i~-----~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~ 94 (109)
+.|+..++... .++..++.++. +||+++ ++++ .+.+++++|+++++||.++ ..|++++..
T Consensus 11 ~~~~~~~~~~~~~~~~p~~~~~~l~-~~Gpv~~~~~~~~~~--~~~vvv~~~~~v~~vl~~~-~~f~~~~~~ 78 (414)
T 2uuq_A 11 VMSHEFQLATAETWPNPWPMYRALR-DHDPVHHVVPPQRPE--YDYYVLSRHADVWSAARDH-QTFSSAQGL 78 (414)
T ss_dssp --CCSCCCCCTTTTTCCHHHHHHHH-HHCSEEEECCTTCGG--GCEEEECSHHHHHHHHHCT-TTEESTTCS
T ss_pred hhcCccCcCChhhccCchHHHHHHH-hcCCEEcccccccCC--CCEEEEcCHHHHHHHHcCc-hhccCCCCc
Confidence 34555444321 26777888875 689998 7776 6889999999999999876 568877643
No 60
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein, oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB: 3nc5_A* 3nc6_A* 3nc7_A*
Probab=97.13 E-value=0.00043 Score=47.90 Aligned_cols=50 Identities=12% Similarity=0.227 Sum_probs=37.8
Q ss_pred cHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCChhh
Q psy1306 43 VPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNISR 96 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~ 96 (109)
++..++..+ ++||+++++..++ .+++++|+++++||.++. .|++++....
T Consensus 54 ~p~~~~~~l-r~~gpv~~~~~~~--~~vv~~~~~v~~vl~~~~-~f~~~~~~~~ 103 (441)
T 3nc3_A 54 NPYAYFSQL-REEDPVHYEESID--SYFISRYHDVRYILQHPD-IFTTKSLVER 103 (441)
T ss_dssp CGGGTHHHH-HHHCSEEEETTTT--EEEECCHHHHHHHHHCTT-TEECCCTTSC
T ss_pred ChHHHHHHH-HhcCCEEEeCCCC--EEEEcCHHHHHHHhcCcc-cccccccccc
Confidence 455566665 6799999987655 899999999999997764 4877765433
No 61
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans}
Probab=97.07 E-value=0.00049 Score=47.67 Aligned_cols=48 Identities=10% Similarity=0.173 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCCee--EEe-cCCccEEEEeCHHHHHHHHhhCCCCCCCCCC
Q psy1306 44 PYQAFKVISKTHGSIF--RLK-LGVVPAIVVNGLENIKEVLFVKATDFDGRPN 93 (109)
Q Consensus 44 ~~~~~~~~~~~~g~i~--~~~-~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~ 93 (109)
+...+.++ ++||+++ ++. +++.+.+++++++++++||.++ ..|++++.
T Consensus 47 p~~~~~~l-r~~gPV~~~~~~~~g~~~~~vvt~~~~v~~vl~~~-~~fs~~~~ 97 (450)
T 3tkt_A 47 LLDRFDAL-RAEAPVAKVVAPDDEHEPFWLVSSFDGVMKASKDN-ATFLNNPK 97 (450)
T ss_dssp HHHHHHHH-HHHCSEEEECCTTCSSCCEEEECSHHHHHHHHHCT-TTEESSSS
T ss_pred chHHHHHH-HhcCCeecccccCCCCCCEEEEecHHHHHHHHhCc-ccccCCCc
Confidence 56667777 5689999 888 6778999999999999999765 67887764
No 62
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A*
Probab=97.05 E-value=0.0014 Score=44.41 Aligned_cols=47 Identities=6% Similarity=-0.005 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 43 VPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
++..++.++.++ |+++++..++ +.+++++|+++++||.+. +.|++++
T Consensus 25 ~p~~~~~~l~~~-Gpv~~~~~~~-~~~vv~~~~~v~~vl~~~-~~f~~~~ 71 (396)
T 3oft_A 25 DYFAAWKTLLDG-PGLVWSTANG-GHWIAARGDVVRELWGDA-ERLSSQC 71 (396)
T ss_dssp CHHHHHHGGGGS-CSEEEECSTT-SEEEECSHHHHHHHHHCT-TTEESTT
T ss_pred ChHHHHHHHHhc-CCeeeecCCC-CEEEEcCHHHHHHHHcCc-ccccCCc
Confidence 789999999988 9999998874 588899999999999654 5787776
No 63
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A {Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Probab=96.97 E-value=0.00074 Score=46.27 Aligned_cols=47 Identities=13% Similarity=0.111 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHHcCCeeEEecCC--ccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 43 VPYQAFKVISKTHGSIFRLKLGV--VPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~~~--~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
+++.++..+. +||+++++.+++ .+.+++++|+++++||.+ ..|++++
T Consensus 28 ~p~~~~~~l~-~~Gpv~~~~~~~g~~~~~vv~~~~~v~~vl~~--~~f~~~~ 76 (411)
T 2dkk_A 28 EFDPVLAELM-REGPLTRVRLPHGEGWAWLATRYDDVKAITND--PRFGRAE 76 (411)
T ss_dssp CCCHHHHHHH-TTCSEEEEECSBSBSCEEEECSHHHHHHHTTC--TTEESGG
T ss_pred cccHHHHHHH-hcCCeEeeecCCCceeEEEEcCHHHHHHHHcC--CCcccCC
Confidence 4557787776 799999999754 789999999999999975 3676654
No 64
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein, vancomycin biosynthes carrier protein, oxidoreductase; HET: HEM; 2.10A {Amycolatopsis balhimycina}
Probab=96.84 E-value=0.0017 Score=44.55 Aligned_cols=49 Identities=6% Similarity=-0.057 Sum_probs=39.3
Q ss_pred cHHHHHHHHHHHcCCeeEEe-cCC-ccEEEEeCHHHHHHHHhhCCCCCCCCCC
Q psy1306 43 VPYQAFKVISKTHGSIFRLK-LGV-VPAIVVNGLENIKEVLFVKATDFDGRPN 93 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~-~~~-~~~v~i~~p~~~~~il~~~~~~~~~r~~ 93 (109)
++...+.++.+ ||+++++. .|. .+.+++++++++++||.+. +.|++++.
T Consensus 38 dp~~~~~~lr~-~gpV~~~~~~g~~~~~~vv~~~~~v~~vl~~~-~~fs~~~~ 88 (415)
T 3mgx_A 38 ERHARWRELAA-EDAMVWSDPGSSPSGFWSVFSHRACAAVLAPS-APLTSEYG 88 (415)
T ss_dssp THHHHHHHHHH-HTCCEEECSSSSSSCEEEECSHHHHHHHSCTT-SSEECTTC
T ss_pred ChhHHHHHHHh-cCCEeeccCCCCcCCEEEEecHHHHHHHHhCh-hhhcCCcc
Confidence 68888888876 89999986 443 7899999999999999544 56877664
No 65
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis}
Probab=96.68 E-value=0.0018 Score=43.97 Aligned_cols=46 Identities=9% Similarity=0.099 Sum_probs=37.0
Q ss_pred cHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCC
Q psy1306 43 VPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPN 93 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~ 93 (109)
++..++.++.+ ||+++++. . +.+++++|+++++||.++ +.|++++.
T Consensus 19 ~p~~~~~~l~~-~Gpv~~~~--~-~~vvv~~~~~v~~vl~~~-~~f~~~~~ 64 (398)
T 2xkr_A 19 EARAAYRWMRA-NQPVFRDR--N-GLAAASTYQAVIDAERQP-ELFSNAGG 64 (398)
T ss_dssp THHHHHHHHHH-HCSEEECT--T-CCEEECSHHHHHHHHTCT-TTEESTTC
T ss_pred ChhHHHHHHHh-cCCeeecC--C-CeEEEecHHHHHHHHhCc-ccccCccc
Confidence 67888888887 89998654 3 789999999999999765 36877764
No 66
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12; 1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Probab=96.47 E-value=0.0028 Score=43.20 Aligned_cols=46 Identities=17% Similarity=0.305 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCC
Q psy1306 43 VPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPN 93 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~ 93 (109)
++..++.++ ++||+++++++| .+++++++++++||.++ ..+++++.
T Consensus 30 ~p~~~~~~l-r~~gpv~~~~~g---~~vv~~~~~v~~vl~~~-~~~~~~~~ 75 (418)
T 3r9b_A 30 DPYPIYDRI-RRGGPLALPEAN---LAVFSSFSDCDDVLRHP-SSCSDRTK 75 (418)
T ss_dssp CCHHHHHHH-HHHCCEEEGGGT---EEEECSHHHHHHHHHCT-TEECCGGG
T ss_pred CchHHHHHH-HhcCCEEECCCC---eEEEecHHHHHHHHcCc-ccccCccc
Confidence 678888887 567999988776 89999999999999754 34555553
No 67
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta binding protein; HET: HEM; 2.47A {Micromonospora echinospora}
Probab=96.24 E-value=0.0022 Score=43.52 Aligned_cols=44 Identities=18% Similarity=0.309 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 43 VPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
++..++..+ ++||++++ + +.+.+++++|+++++||.+ ..|+.++
T Consensus 14 ~p~~~~~~l-~~yGpv~~-~--g~~~~vv~~~~~v~~vl~~--~~f~~~~ 57 (397)
T 3buj_A 14 DPYPSYHWL-LRHDPVHR-G--AHRVWYVSRFADVRAVLGD--ERFARTG 57 (397)
T ss_dssp CCHHHHHHH-HHHCSEEE-C--GGGCEEECSHHHHHHHHTC--TTEESHH
T ss_pred CchHHHHHH-HhcCCeee-C--CCCeEEEcCHHHHHHHHcC--CCcccCc
Confidence 466667666 58999998 6 5789999999999999975 3676654
No 68
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A* 1io9_A* 1io8_A*
Probab=96.21 E-value=0.0052 Score=41.32 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCCC
Q psy1306 46 QAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPN 93 (109)
Q Consensus 46 ~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~~ 93 (109)
..+.++ ++||+++++ + +.+++++++++++||.++ +.|++++.
T Consensus 3 ~~~~~l-r~~Gpv~~~--g--~~~vv~~~~~v~~vl~~~-~~f~~~~~ 44 (368)
T 1io7_A 3 DWFSEM-RKKDPVYYD--G--NIWQVFSYRYTKEVLNNF-SKFSSDLT 44 (368)
T ss_dssp HHHHHH-HHHCSEEEC--S--SCEEECSHHHHHHHHHCT-TTEECCCS
T ss_pred HHHHHH-HhcCCeEeE--C--CEEEEecHHHHHHHHcCc-cccccccc
Confidence 345555 578999987 4 588999999999999864 47888774
No 69
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450 vancomycin, oxidoreductase; HET: HEM; 1.70A {Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A* 1lgf_A*
Probab=96.08 E-value=0.0065 Score=41.26 Aligned_cols=42 Identities=14% Similarity=0.270 Sum_probs=29.7
Q ss_pred HHHHHcCCeeEEecC-Cc---cEEEEeCHHHHHHHHhhCCCCCCCCCC
Q psy1306 50 VISKTHGSIFRLKLG-VV---PAIVVNGLENIKEVLFVKATDFDGRPN 93 (109)
Q Consensus 50 ~~~~~~g~i~~~~~~-~~---~~v~i~~p~~~~~il~~~~~~~~~r~~ 93 (109)
.+.++ |+++++.++ +. +.+++++|+++++||..+ ..|+.++.
T Consensus 21 ~l~~~-Gpv~~~~~~~g~~~~~~vvv~~~~~v~~vl~~~-~~f~~~~~ 66 (398)
T 1lfk_A 21 ELLAA-GALTRVTIGSGADAETHWMATAHAVVRQVMGDH-QQFSTRRR 66 (398)
T ss_dssp HHHTS-CSEEEEC------CCCEEEECSHHHHHHHHHCT-TTEEECTT
T ss_pred HHHhc-CCccccccCCCCcccceEEEecHHHHHHHHhhC-cccccccc
Confidence 36665 999999875 45 899999999999999333 35776654
No 70
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase, oxidoreductase; HET: HEM; 2.00A {Sphingopyxis macrogoltabida}
Probab=96.03 E-value=0.015 Score=39.95 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=38.7
Q ss_pred cHHHHHHHHHHHcCCeeEEec-CCccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 43 VPYQAFKVISKTHGSIFRLKL-GVVPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
++..++..+.++ |+|+++.. ++.+.+++++++++++||.+. +.|+.++
T Consensus 39 ~p~~~~~~lr~~-gpv~~~~~~~~~~~~vvt~~~~v~~vl~d~-~~fs~~~ 87 (426)
T 3rwl_A 39 SVGEYFKRLRKD-DPVHYCADSAFGPYWSITKYNDIMHVDTNH-DIFSSDA 87 (426)
T ss_dssp CHHHHHHHHHHH-CSEEEESCCTTCSEEEECSHHHHHHHHHCT-TTEECCG
T ss_pred CccHHHHHHHhc-CCeeeccCCCCCCEEEEcCHHHHHHHHcCC-ccccccc
Confidence 577888888876 99999987 457799999999999999765 4566644
No 71
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Probab=95.97 E-value=0.0066 Score=40.86 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 46 QAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 46 ~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
..+.++ ++||+++++. | .+++++|+++++||.++ +.|++++
T Consensus 3 ~~~~~l-r~~gpv~~~~-g---~~vv~~~~~v~~vl~~~-~~f~~~~ 43 (367)
T 3b4x_A 3 DWFKQM-RKESPVYYDG-K---VWNLFKYEDCKMVLNDH-KRFSSNL 43 (367)
T ss_dssp HHHHHH-HHHCSEEECS-S---SEEECSHHHHHHHHHCT-TTEECCC
T ss_pred HHHHHH-HHcCCceeeC-C---EEEEecHHHHHHHHcCc-hhhccCc
Confidence 345555 4799999888 3 78999999999999865 4787774
No 72
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A*
Probab=95.03 E-value=0.014 Score=38.79 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=27.5
Q ss_pred HHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 53 KTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 53 ~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
++||+++++ + .+++++|+++++||.++ +.|++++
T Consensus 2 r~~gpv~~~---g--~~vv~~~~~v~~vl~~~-~~f~~~~ 35 (343)
T 2rfb_A 2 RLNDPVHYD---G--AWHVYKYSDVKHVLMND-KIFSSNP 35 (343)
T ss_dssp -CCCCEEET---T--EEEECSHHHHHHHHHCT-TTEESSC
T ss_pred CCcCCeeee---C--eEEEcCHHHHHHHHhCh-hhcccCC
Confidence 468999875 2 88999999999999875 4687776
No 73
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=94.40 E-value=0.0055 Score=41.93 Aligned_cols=63 Identities=14% Similarity=0.212 Sum_probs=44.0
Q ss_pred CCCC-CCCCceeeccccc----CCCCcHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 22 KAPM-PWALPIIGHLHLL----GQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 22 ~~pg-p~~~~~~G~~~~~----~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
.+|| ++++|++|+...+ .. .++..++.++.++ ++++.. .+.+++++++++++||.+ ..|+.++
T Consensus 35 ~ppG~~~~~P~~G~~~~~~~~~~~-~dp~~~~~~lr~~--pV~~~~---~~~~vv~~~~~v~~vl~d--~~f~~~~ 102 (381)
T 2yjn_B 35 MIRGLHWGYGSNGDPYPMLLCGHD-DDPQRRYRSMRES--GVRRSR---TETWVVADHATARQVLDD--PAFTRAT 102 (381)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHTCC-SCCHHHHHHHHHH--CEEECS---SSCEEECSHHHHHHHHHC--SSEESSC
T ss_pred CCCcccccccccCCchhhcCchhc-cCchHHHHHHHhC--CceeCC---CCEEEEcCHHHHHHHHcC--CCcCCCc
Confidence 3555 3367888876442 11 1677788888765 887654 468999999999999976 3676654
No 74
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A {Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Probab=90.61 E-value=0.11 Score=35.41 Aligned_cols=39 Identities=5% Similarity=-0.032 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhC
Q psy1306 43 VPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVK 84 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~ 84 (109)
++..+ ++.+++|+++.+.+++.. +++++++++++||.++
T Consensus 34 ~P~~~--~~lr~~gpv~~~~~g~~~-~vv~~~~~v~~vL~d~ 72 (416)
T 3p3o_A 34 FSWDS--PEVAEAREKSWIARTPLA-LLVLRYAEADQLARDK 72 (416)
T ss_dssp CCTTS--HHHHHHHHHCSEEECSSS-EEECSHHHHHHHHHCT
T ss_pred CCchH--HHHHHhCCccccccCCCc-eEEeCHHHHHHHHcCc
Confidence 45545 455678999998887666 8999999999999765
No 75
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A {Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A* 4dnz_A*
Probab=90.49 E-value=0.57 Score=31.91 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCC
Q psy1306 43 VPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDG 90 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~ 90 (109)
|+..++.++.+ +|+|++ ......+++++++++++||.+. +.|+.
T Consensus 35 dP~~~~~~lR~-~gPV~~--~~~~~~~~vt~~~~v~~vl~d~-~~fs~ 78 (412)
T 4dnj_A 35 DPYPEQETLRE-AGPVVY--LDKWNVYGVARYAEVYAVLNDP-LTFCS 78 (412)
T ss_dssp SCHHHHHHHHH-HCSSEE--ETTTTEEEECSHHHHHHHHTCT-TTEES
T ss_pred CcHHHHHHHHh-cCCEEE--ECCCCEEEECCHHHHHHHHcCC-ccccC
Confidence 56667777654 699874 4556789999999999999654 45543
No 76
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A*
Probab=77.99 E-value=2.1 Score=28.87 Aligned_cols=43 Identities=12% Similarity=0.274 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHHcCCeeEEecCCccEEEEeCHHHHHHHHhhCCCCCCCC
Q psy1306 43 VPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGR 91 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~r 91 (109)
++...+..+.++ |+++++..| .+++++++.+++++.+. .|+.+
T Consensus 21 dp~~~~~~lr~~-~pv~~~~~g---~~~v~~~~~v~~~l~d~--~fs~~ 63 (394)
T 2wiy_A 21 NPYPWYRRLQQD-HPVHKLEDG---TYLVSRYADVSHFAKLP--IMSVE 63 (394)
T ss_dssp CCHHHHHHHHHH-CSEEECTTS---CEEECCHHHHHHHTTST--TEECH
T ss_pred CccHHHHHHHhc-CCeEEecCC---eEEEcCHHHHHHHHcCC--Ccccc
Confidence 466677777654 899876643 68899999999999643 56543
No 77
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.83 E-value=7.8 Score=21.24 Aligned_cols=61 Identities=10% Similarity=0.096 Sum_probs=42.9
Q ss_pred eecccccCCCCcHHHHHHHHHHHcC-CeeEEecCCccEEEEeCHHHHHHHHhh-CCCCCCCCCC
Q psy1306 32 IGHLHLLGQYEVPYQAFKVISKTHG-SIFRLKLGVVPAIVVNGLENIKEVLFV-KATDFDGRPN 93 (109)
Q Consensus 32 ~G~~~~~~~~~~~~~~~~~~~~~~g-~i~~~~~~~~~~v~i~~p~~~~~il~~-~~~~~~~r~~ 93 (109)
++|+..-...+..-..+.++..+|| .|..+. +++-.|...+.+.++..+.. +...+-+|+.
T Consensus 14 V~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 14 VYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT-GCSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp EESCCTTSCHHHHHHHHHHHHHTTTCCEEECC-TTCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe-cCEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 6787654332134456888999995 888774 58889999999999888754 4455656664
No 78
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=68.41 E-value=9.8 Score=19.20 Aligned_cols=48 Identities=8% Similarity=-0.065 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCeeEEecC-------CccEEEEeCHHHHHHHHhh-CCCCCCCC
Q psy1306 44 PYQAFKVISKTHGSIFRLKLG-------VVPAIVVNGLENIKEVLFV-KATDFDGR 91 (109)
Q Consensus 44 ~~~~~~~~~~~~g~i~~~~~~-------~~~~v~i~~p~~~~~il~~-~~~~~~~r 91 (109)
....+.+...+||.+..+.+. +.-.|...+++.++.++.. +...+.++
T Consensus 20 t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 20 LKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp HHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred HHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 346677888899999888764 2234557899999998864 33344444
No 79
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=65.47 E-value=15 Score=20.38 Aligned_cols=71 Identities=7% Similarity=0.015 Sum_probs=42.7
Q ss_pred CCCCCCCceeecccccCCC------CcHHHHHHHHHHHcCCeeEEecC-----CccEEEEeCHHHHHHHHhh-CCCCCCC
Q psy1306 23 APMPWALPIIGHLHLLGQY------EVPYQAFKVISKTHGSIFRLKLG-----VVPAIVVNGLENIKEVLFV-KATDFDG 90 (109)
Q Consensus 23 ~pgp~~~~~~G~~~~~~~~------~~~~~~~~~~~~~~g~i~~~~~~-----~~~~v~i~~p~~~~~il~~-~~~~~~~ 90 (109)
+|.|...-++-|+...... ++....+.+...+||.|..+.+. +.-.|-..+++.++..+.. +...|.+
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3455555666777654321 12444556677789998877762 2334556788888777654 4456666
Q ss_pred CCC
Q psy1306 91 RPN 93 (109)
Q Consensus 91 r~~ 93 (109)
|..
T Consensus 83 R~i 85 (114)
T 3s6e_A 83 KMI 85 (114)
T ss_dssp EEC
T ss_pred EEE
Confidence 553
No 80
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=64.28 E-value=16 Score=20.17 Aligned_cols=39 Identities=8% Similarity=0.019 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHcCCeeEEecCCcc-EEEEeCHHHHHHHHh
Q psy1306 44 PYQAFKVISKTHGSIFRLKLGVVP-AIVVNGLENIKEVLF 82 (109)
Q Consensus 44 ~~~~~~~~~~~~g~i~~~~~~~~~-~v~i~~p~~~~~il~ 82 (109)
-..-+.++...||.+.--|+-.+. .+++.+++.+++++.
T Consensus 28 Kt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 28 KTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHH
T ss_pred hhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHH
Confidence 345667777888988888887765 567999999999987
No 81
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.23 E-value=16 Score=19.63 Aligned_cols=59 Identities=10% Similarity=0.151 Sum_probs=38.6
Q ss_pred eeecccccCCCCcHHHHHHHHHHHcCCeeEEecC--------CccEEEEeCHHHHHHHHhhCCCCCCCCCC
Q psy1306 31 IIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLG--------VVPAIVVNGLENIKEVLFVKATDFDGRPN 93 (109)
Q Consensus 31 ~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~--------~~~~v~i~~p~~~~~il~~~~~~~~~r~~ 93 (109)
++||+..-. -...+.++..+||+|..+.+. +.-.|...+++.++.++..+...+.++..
T Consensus 15 fV~~Lp~~~----te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l 81 (103)
T 1s79_A 15 YIKGFPTDA----TLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDL 81 (103)
T ss_dssp EEECCCTTC----CHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTC
T ss_pred EEECCCCCC----CHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEE
Confidence 456665322 234566777889998777652 23456678999999999755556666554
No 82
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=60.17 E-value=14 Score=18.10 Aligned_cols=46 Identities=13% Similarity=0.119 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCeeEEecCC---------ccEEEEeCHHHHHHHHhhCCCCCCCC
Q psy1306 46 QAFKVISKTHGSIFRLKLGV---------VPAIVVNGLENIKEVLFVKATDFDGR 91 (109)
Q Consensus 46 ~~~~~~~~~~g~i~~~~~~~---------~~~v~i~~p~~~~~il~~~~~~~~~r 91 (109)
..+.++..+||++..+.+.. .-.|...+++.++.++..+...+.++
T Consensus 14 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~ 68 (75)
T 1iqt_A 14 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLS 68 (75)
T ss_dssp HHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTB
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCE
Confidence 45667777899988776531 23455779999999987654444443
No 83
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.03 E-value=18 Score=18.93 Aligned_cols=54 Identities=9% Similarity=0.106 Sum_probs=34.4
Q ss_pred ceeecccccCCCCcHHHHHHHHHHHcCCeeEEecC------CccEEEEeCHHHHHHHHhh
Q psy1306 30 PIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLG------VVPAIVVNGLENIKEVLFV 83 (109)
Q Consensus 30 ~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~------~~~~v~i~~p~~~~~il~~ 83 (109)
-++||+..-...++....+.++..+||.|..+.+. +.-.|...+++.++.++..
T Consensus 12 l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~ 71 (96)
T 2dgx_A 12 VQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNS 71 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHH
Confidence 35677764332113333455888899999887764 2235557799999888763
No 84
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=56.25 E-value=22 Score=19.14 Aligned_cols=67 Identities=13% Similarity=0.060 Sum_probs=41.3
Q ss_pred CCCCCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEec---C---CccEEEEeCHHHHHHHHhh-CCCCCCCCC
Q psy1306 22 KAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKL---G---VVPAIVVNGLENIKEVLFV-KATDFDGRP 92 (109)
Q Consensus 22 ~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~---~---~~~~v~i~~p~~~~~il~~-~~~~~~~r~ 92 (109)
.+|.+...-++||+..-. -...+.++..+||.+..+.+ + +.-.|...+++.++.++.. +...+.++.
T Consensus 3 ~~~~~~~~l~V~nlp~~~----t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 76 (115)
T 3lqv_A 3 LPPEVNRILYIRNLPYKI----TAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRY 76 (115)
T ss_dssp CCTTCCSEEEEESCCTTC----CHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCB
T ss_pred CCCCCCCEEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 344454555668875322 23456777788999887765 2 2345667899998888763 444554443
No 85
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=53.93 E-value=23 Score=18.69 Aligned_cols=61 Identities=8% Similarity=0.151 Sum_probs=38.5
Q ss_pred ceeecccccCCC--CcHHHHHHHHHHHcCCeeEEecC---------CccEEEEeCHHHHHHHHhh-CCCCCCC
Q psy1306 30 PIIGHLHLLGQY--EVPYQAFKVISKTHGSIFRLKLG---------VVPAIVVNGLENIKEVLFV-KATDFDG 90 (109)
Q Consensus 30 ~~~G~~~~~~~~--~~~~~~~~~~~~~~g~i~~~~~~---------~~~~v~i~~p~~~~~il~~-~~~~~~~ 90 (109)
-++||+...... +.....+.++..+||.|..+.+. +.-.|...+++.++.++.. +...+.+
T Consensus 9 vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 9 IVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp EEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred EEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 456777653321 12445677788899999888763 2234567799999888753 4445554
No 86
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=51.02 E-value=12 Score=20.67 Aligned_cols=50 Identities=10% Similarity=0.034 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHcCCeeEEecCCcc-EEEEeCHHHHHHHHhh--CCCCCCCCCC
Q psy1306 44 PYQAFKVISKTHGSIFRLKLGVVP-AIVVNGLENIKEVLFV--KATDFDGRPN 93 (109)
Q Consensus 44 ~~~~~~~~~~~~g~i~~~~~~~~~-~v~i~~p~~~~~il~~--~~~~~~~r~~ 93 (109)
-..-+.++...||.+.--|+-.+. .+++.+|+.+++++.. ....|.-+.+
T Consensus 18 Kt~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~~~~~y~i~ty 70 (101)
T 3ctr_A 18 KTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSKYAESYRIQTY 70 (101)
T ss_dssp CHHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHHHTTCSSCCCCCH
T ss_pred hhHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceEEEEh
Confidence 334566777778988888887765 5679999999999973 2445554444
No 87
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=47.81 E-value=28 Score=17.92 Aligned_cols=55 Identities=11% Similarity=0.104 Sum_probs=35.8
Q ss_pred CceeecccccCCCCcHHHHHHHHHHHcCCeeEEecC------CccEEEEeCHHHHHHHHhh
Q psy1306 29 LPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLG------VVPAIVVNGLENIKEVLFV 83 (109)
Q Consensus 29 ~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~------~~~~v~i~~p~~~~~il~~ 83 (109)
.-++||+..-...++....+.++..+||.+..+.+. +.-.|...+++.++.++..
T Consensus 10 ~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~ 70 (97)
T 1nu4_A 10 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 70 (97)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 345677664322112334555888999999888764 3445668899999888764
No 88
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=46.31 E-value=38 Score=19.03 Aligned_cols=64 Identities=16% Similarity=0.220 Sum_probs=39.6
Q ss_pred CceeecccccCCCCcHHHHHHHHHHHcCCeeEEecC------CccEEEEeCHHHHHHHHhh-CCCCCCCCC
Q psy1306 29 LPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLG------VVPAIVVNGLENIKEVLFV-KATDFDGRP 92 (109)
Q Consensus 29 ~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~------~~~~v~i~~p~~~~~il~~-~~~~~~~r~ 92 (109)
.-++||+..-...++.-..+.++..+||.|..+.+. +.-.|...+++.+...+.. +...+.+++
T Consensus 31 ~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 31 VVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 345587764322112334566788999999877652 2345667899998888754 344555554
No 89
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=46.03 E-value=33 Score=18.20 Aligned_cols=63 Identities=10% Similarity=0.020 Sum_probs=40.6
Q ss_pred CceeecccccCCC--CcHHHHHHHHHHHcCCeeEEecC-------CccEEEEeCHHHHHHHHhh-CCCCCCCC
Q psy1306 29 LPIIGHLHLLGQY--EVPYQAFKVISKTHGSIFRLKLG-------VVPAIVVNGLENIKEVLFV-KATDFDGR 91 (109)
Q Consensus 29 ~~~~G~~~~~~~~--~~~~~~~~~~~~~~g~i~~~~~~-------~~~~v~i~~p~~~~~il~~-~~~~~~~r 91 (109)
.-++||+..-... +.....+.++..+||.|..+.+. +.-.|...+++.++.++.. +...+.++
T Consensus 17 ~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 17 VIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp EEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred EEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3456887753321 00456788888999999888764 2345567788888888764 44455554
No 90
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=45.27 E-value=27 Score=16.99 Aligned_cols=47 Identities=9% Similarity=0.089 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCeeEEecCC---------ccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 46 QAFKVISKTHGSIFRLKLGV---------VPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 46 ~~~~~~~~~~g~i~~~~~~~---------~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
..+.++..+||.+..+.+.. .-.|...+++.++.++.-+...+.+++
T Consensus 14 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 69 (75)
T 2mss_A 14 EDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKM 69 (75)
T ss_dssp HHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCC
T ss_pred HHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEE
Confidence 45667778899988776532 123456799999999865444554443
No 91
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Probab=45.26 E-value=39 Score=22.98 Aligned_cols=48 Identities=17% Similarity=0.055 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHcCCeeEEecC-CccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 43 VPYQAFKVISKTHGSIFRLKLG-VVPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~~-~~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
+++..+..+.++ |+.-.+|.. +....+++..+.+++||.+. +.|+.+.
T Consensus 38 ~~~~~~~~lr~~-~~~~~~~~~~~gg~W~vtr~~dv~~vl~d~-~~fs~~~ 86 (417)
T 4dxy_A 38 GYHEAWKKVQHP-GIPDLIWTPFTGGHWIATNGDTVKEVYSDP-TRFSSEV 86 (417)
T ss_dssp CHHHHHHHHSCT-TCCSEEEESSTTSEEEECSHHHHHHHHTCT-TTEESSC
T ss_pred ChHHHHHHHHhh-CCCCEEecCCCCCEEEECCHHHHHHHHcCc-hhccCCC
Confidence 566666666554 433333431 22567899999999999653 4676544
No 92
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=43.57 E-value=79 Score=21.89 Aligned_cols=51 Identities=8% Similarity=0.004 Sum_probs=32.9
Q ss_pred CceeecccccCCCCcHHHHHHHHHHHcCCeeEEecC---------CccEEEEeCHHHHHHHHhh
Q psy1306 29 LPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLG---------VVPAIVVNGLENIKEVLFV 83 (109)
Q Consensus 29 ~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~---------~~~~v~i~~p~~~~~il~~ 83 (109)
.-++||+..-. -...+..+..+||.|..+.+. +.-+|...+++.+..++..
T Consensus 104 ~lfV~nL~~~~----te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 104 TLFVARVNYDT----TESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred EEEEeCCCCCC----CHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHH
Confidence 34567765322 234566777789998777652 1245567799998888754
No 93
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=42.33 E-value=40 Score=18.16 Aligned_cols=69 Identities=13% Similarity=0.050 Sum_probs=40.6
Q ss_pred CCCCCCceeecccccCC-CCcHHHHHHHHHHHcCCeeEEecC------C----ccEEEEeCHHHHHHHHhh-CCCCCCCC
Q psy1306 24 PMPWALPIIGHLHLLGQ-YEVPYQAFKVISKTHGSIFRLKLG------V----VPAIVVNGLENIKEVLFV-KATDFDGR 91 (109)
Q Consensus 24 pgp~~~~~~G~~~~~~~-~~~~~~~~~~~~~~~g~i~~~~~~------~----~~~v~i~~p~~~~~il~~-~~~~~~~r 91 (109)
+.|...-++.|+..... .++...-+.+...+||.|..+.+. + .-.|-..+++.+...+.. +...|.+|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34445566677763210 014556777788899998777642 1 123446788888777654 44556655
Q ss_pred C
Q psy1306 92 P 92 (109)
Q Consensus 92 ~ 92 (109)
.
T Consensus 85 ~ 85 (105)
T 2pe8_A 85 V 85 (105)
T ss_dssp E
T ss_pred E
Confidence 4
No 94
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=42.29 E-value=41 Score=18.22 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=37.6
Q ss_pred ceeecccccCCCCcHHHHHHHHHHHcCCeeEEecC--CccEEEEeCHHHHHHHHhh-CCCCCCCCC
Q psy1306 30 PIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLG--VVPAIVVNGLENIKEVLFV-KATDFDGRP 92 (109)
Q Consensus 30 ~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~--~~~~v~i~~p~~~~~il~~-~~~~~~~r~ 92 (109)
-++||+..-.. .+.+.++..+||.|..+.+. +.-.|...+++.++.++.. +...+.++.
T Consensus 19 l~V~nLp~~~t----~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 19 VVVSGLPPSGS----WQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp EEEEECCSSCC----TTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred EEEeCCCCCCC----HHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 45577764322 23455667789998887764 3455667899999888763 344555543
No 95
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=37.52 E-value=25 Score=18.95 Aligned_cols=59 Identities=14% Similarity=0.061 Sum_probs=35.1
Q ss_pred CceeecccccCCCCcHHHHHH---HHHHHcCCeeEEecCC------------ccEEEEeCHHHHHHHHhh-CCCCCCCC
Q psy1306 29 LPIIGHLHLLGQYEVPYQAFK---VISKTHGSIFRLKLGV------------VPAIVVNGLENIKEVLFV-KATDFDGR 91 (109)
Q Consensus 29 ~~~~G~~~~~~~~~~~~~~~~---~~~~~~g~i~~~~~~~------------~~~v~i~~p~~~~~il~~-~~~~~~~r 91 (109)
.-++||+..-... ..+. ++..+||.|..+.+.. .-.|...+++.++.++.. +...+.++
T Consensus 17 ~l~V~nLp~~~~~----~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 17 LVFVVGLSQRLAD----PEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CEEEEEECTTTCC----HHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred EEEEECCCCCCCH----HHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456777643321 2334 6677899987766521 234557799999888875 44344443
No 96
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=37.44 E-value=53 Score=18.09 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCeeEEecC---CccEEEEeCHHHHHHHHhh-CCCCCCCCC
Q psy1306 45 YQAFKVISKTHGSIFRLKLG---VVPAIVVNGLENIKEVLFV-KATDFDGRP 92 (109)
Q Consensus 45 ~~~~~~~~~~~g~i~~~~~~---~~~~v~i~~p~~~~~il~~-~~~~~~~r~ 92 (109)
...+.++..+||.|..+.+. +.-.|...+.+.++.++.. +...+.++.
T Consensus 51 e~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~ 102 (121)
T 2bz2_A 51 PTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQ 102 (121)
T ss_dssp HHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCB
T ss_pred HHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 35677788889988766653 2344556789988888754 444454443
No 97
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=37.36 E-value=45 Score=17.23 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=38.5
Q ss_pred ceeecccc-cCCCCcHHHHHHHHHHHcCCeeEEec-CCccEEEEeCHHHHHHHHhh-CCCCCCCCC
Q psy1306 30 PIIGHLHL-LGQYEVPYQAFKVISKTHGSIFRLKL-GVVPAIVVNGLENIKEVLFV-KATDFDGRP 92 (109)
Q Consensus 30 ~~~G~~~~-~~~~~~~~~~~~~~~~~~g~i~~~~~-~~~~~v~i~~p~~~~~il~~-~~~~~~~r~ 92 (109)
-++||+.. -. -...+.++..+||.|..+.+ -+.-.|...+++.++.++.. +...+.+++
T Consensus 13 l~V~nlp~~~~----t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (96)
T 2kvi_A 13 LFIGNLPLKNV----SKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKK 74 (96)
T ss_dssp EEEESSTTSCC----CHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTT
T ss_pred EEEeCCCcccC----CHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 34577763 22 23456777888999887776 33456668899999988864 444554544
No 98
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=37.35 E-value=54 Score=18.17 Aligned_cols=68 Identities=7% Similarity=-0.010 Sum_probs=42.1
Q ss_pred CCCCceeecccccCCC-CcHHHHHHHHHHHcCCeeEEecCC-------------ccEEEEeCHHHHHHHHhh-CCCCCCC
Q psy1306 26 PWALPIIGHLHLLGQY-EVPYQAFKVISKTHGSIFRLKLGV-------------VPAIVVNGLENIKEVLFV-KATDFDG 90 (109)
Q Consensus 26 p~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~g~i~~~~~~~-------------~~~v~i~~p~~~~~il~~-~~~~~~~ 90 (109)
|...-++.|+.....- ++...-+.+...+||.|..+.+.. .-.|-..+++.++..+.. +...|.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4445567787643211 256777888888999988766421 123446688888777654 4456666
Q ss_pred CCC
Q psy1306 91 RPN 93 (109)
Q Consensus 91 r~~ 93 (109)
|..
T Consensus 99 R~i 101 (118)
T 3ue2_A 99 RKV 101 (118)
T ss_dssp EEC
T ss_pred cEE
Confidence 653
No 99
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=37.26 E-value=61 Score=18.79 Aligned_cols=48 Identities=17% Similarity=0.300 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcC--CeeEEecC-----C----ccEEEEeCHHHHHHHHhh-CCCCCCCCC
Q psy1306 45 YQAFKVISKTHG--SIFRLKLG-----V----VPAIVVNGLENIKEVLFV-KATDFDGRP 92 (109)
Q Consensus 45 ~~~~~~~~~~~g--~i~~~~~~-----~----~~~v~i~~p~~~~~il~~-~~~~~~~r~ 92 (109)
...+.++..+|| .+..+.+. + .-.|...+++.++.++.. +...+.++.
T Consensus 69 e~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~ 128 (156)
T 3n9u_C 69 DQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEK 128 (156)
T ss_dssp HHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEE
T ss_pred HHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 345677778899 88776642 1 234557899999999876 444454443
No 100
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=35.98 E-value=52 Score=17.81 Aligned_cols=46 Identities=22% Similarity=0.272 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCCeeEEecCC---------ccEEEEeCHHHHHHHHhhCCCCCCCC
Q psy1306 46 QAFKVISKTHGSIFRLKLGV---------VPAIVVNGLENIKEVLFVKATDFDGR 91 (109)
Q Consensus 46 ~~~~~~~~~~g~i~~~~~~~---------~~~v~i~~p~~~~~il~~~~~~~~~r 91 (109)
..+.++..+||.|..+.+.. .-.|...+.+.++.++.-+...+.++
T Consensus 51 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~ 105 (124)
T 2jwn_A 51 QDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGR 105 (124)
T ss_dssp HHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTE
T ss_pred HHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCe
Confidence 45677778899987665421 23455789999998884343344443
No 101
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.81 E-value=48 Score=17.12 Aligned_cols=59 Identities=10% Similarity=0.116 Sum_probs=37.6
Q ss_pred ceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCC---------ccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 30 PIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGV---------VPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 30 ~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~---------~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
-++||+..-. -...+.++..+||.|..+.+.. .-.|...+.+.++.++.-+...+.++.
T Consensus 13 l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 80 (99)
T 2dgs_A 13 IFVGGIPHNC----GETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKK 80 (99)
T ss_dssp EEEESCCSSC----CHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCB
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeE
Confidence 4457765322 2345677778899988776532 234557899999988865544555544
No 102
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.37 E-value=51 Score=17.00 Aligned_cols=39 Identities=10% Similarity=0.149 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCCeeEEecCC---ccEEEEeCHHHHHHHHhh
Q psy1306 45 YQAFKVISKTHGSIFRLKLGV---VPAIVVNGLENIKEVLFV 83 (109)
Q Consensus 45 ~~~~~~~~~~~g~i~~~~~~~---~~~v~i~~p~~~~~il~~ 83 (109)
...+.++..+||.|..+.++. .-.|...+++.++.++..
T Consensus 27 ~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 27 PTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 68 (97)
T ss_dssp HHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHH
Confidence 346777888999998877642 334557799999888854
No 103
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=33.67 E-value=58 Score=17.47 Aligned_cols=49 Identities=6% Similarity=0.040 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHcCCeeEEecCC-----------ccEEEEeCHHHHHHHHhh-CCCCCCCCC
Q psy1306 44 PYQAFKVISKTHGSIFRLKLGV-----------VPAIVVNGLENIKEVLFV-KATDFDGRP 92 (109)
Q Consensus 44 ~~~~~~~~~~~~g~i~~~~~~~-----------~~~v~i~~p~~~~~il~~-~~~~~~~r~ 92 (109)
...-+.+...+||.|..+.+.- .-.|-..+++.++..+.. +...|.+|.
T Consensus 28 ~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~ 88 (105)
T 3v4m_A 28 IVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRV 88 (105)
T ss_dssp HHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred HHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 3455667778899998887631 124557789888777643 444565554
No 104
>1b35_D CRPV, protein (cricket paralysis virus, VP4); insect picorna-like virus, icosahedral virus; 2.40A {Cricket paralysis virus} SCOP: b.121.4.1
Probab=33.62 E-value=13 Score=17.75 Aligned_cols=12 Identities=17% Similarity=0.537 Sum_probs=9.2
Q ss_pred CCCceeeccccc
Q psy1306 27 WALPIIGHLHLL 38 (109)
Q Consensus 27 ~~~~~~G~~~~~ 38 (109)
..+|++||++.-
T Consensus 29 s~ipilgn~fs~ 40 (57)
T 1b35_D 29 SHIPVLGNIFST 40 (57)
T ss_dssp TCCCCSCCSSSS
T ss_pred hccccccccccc
Confidence 467999998754
No 105
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=33.54 E-value=42 Score=16.81 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=32.9
Q ss_pred ceeecccccCCCCcHHHHHHHHHHHcCCeeEEecC-----C----ccEEEEeCHHHHHHHHhhCC
Q psy1306 30 PIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLG-----V----VPAIVVNGLENIKEVLFVKA 85 (109)
Q Consensus 30 ~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-----~----~~~v~i~~p~~~~~il~~~~ 85 (109)
-++||+..-. -...+.++..+||.+..+.+. + .-.|...+++.++.++..+.
T Consensus 14 l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~ 74 (87)
T 3s7r_A 14 MFVGGLSWDT----SKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKE 74 (87)
T ss_dssp EEEECCCTTC----CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSC
T ss_pred EEEeCCCCCC----CHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCC
Confidence 4557765322 234566777889998776642 1 12345779999998886543
No 106
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=32.37 E-value=63 Score=17.51 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=37.1
Q ss_pred ceeecccccCCCCcHHHHHHHHHHHcCCeeEEecC---------CccEEEEeCHHHHHHHHhh-CCCCCCCCC
Q psy1306 30 PIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLG---------VVPAIVVNGLENIKEVLFV-KATDFDGRP 92 (109)
Q Consensus 30 ~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~---------~~~~v~i~~p~~~~~il~~-~~~~~~~r~ 92 (109)
-+++|+..-. -...+.++..+||.|..+.+. +.-.|...+++.++.++.. +...+.++.
T Consensus 25 l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 93 (126)
T 3ex7_B 25 LFVTGVHEEA----TEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 93 (126)
T ss_dssp EEEESCCTTC----CHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 4456665322 234566777889999887763 2235668899999888853 444554443
No 107
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.27 E-value=62 Score=17.34 Aligned_cols=48 Identities=8% Similarity=0.150 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHcCCeeEEecCC----ccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 44 PYQAFKVISKTHGSIFRLKLGV----VPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 44 ~~~~~~~~~~~~g~i~~~~~~~----~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
-...+.++..+||.|..+.+.. .-.|...+++.++..+... ..+..++
T Consensus 30 te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~-~~~~g~~ 81 (100)
T 2d9o_A 30 SKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNE-VGLVDNP 81 (100)
T ss_dssp CHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTC-CBCSSSB
T ss_pred CHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhc-CCCCCCe
Confidence 3467788889999998877632 3356677999999888763 3344444
No 108
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=31.90 E-value=63 Score=17.37 Aligned_cols=50 Identities=14% Similarity=0.026 Sum_probs=32.6
Q ss_pred ceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCC-------ccEEEEeCHHHHHHHHhh
Q psy1306 30 PIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGV-------VPAIVVNGLENIKEVLFV 83 (109)
Q Consensus 30 ~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-------~~~v~i~~p~~~~~il~~ 83 (109)
-++||+..-. -...+.++..+||.|..+.+.. .-.|-..+++.++.++..
T Consensus 8 lfV~nLp~~~----te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~ 64 (115)
T 4f25_A 8 IFIKNLDKSI----DNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEK 64 (115)
T ss_dssp EEEESCCTTC----CHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHH
T ss_pred EEECCCCCCC----CHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHH
Confidence 3567765322 2346677788899987665421 234567899999888754
No 109
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.51 E-value=59 Score=16.89 Aligned_cols=59 Identities=8% Similarity=0.149 Sum_probs=37.1
Q ss_pred ceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCC---------ccEEEEeCHHHHHHHHhh-CCCCCCCCC
Q psy1306 30 PIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGV---------VPAIVVNGLENIKEVLFV-KATDFDGRP 92 (109)
Q Consensus 30 ~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~---------~~~v~i~~p~~~~~il~~-~~~~~~~r~ 92 (109)
-++||+..-. -...+.++..+||.|..+.+.. .-.|...+++.++.++.. +...+.++.
T Consensus 16 l~V~nLp~~~----t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2dnm_A 16 LKVDNLTYRT----SPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRE 84 (103)
T ss_dssp EEEESCCTTC----CHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBC
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 3457765322 2345677778899988877632 235557888888888763 444555544
No 110
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=31.45 E-value=62 Score=17.12 Aligned_cols=50 Identities=10% Similarity=0.033 Sum_probs=34.2
Q ss_pred ceeecccccCCCCcHHHHHHHHHHHcCCeeEEecC--CccEEEEeCHHHHHHHHhh
Q psy1306 30 PIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLG--VVPAIVVNGLENIKEVLFV 83 (109)
Q Consensus 30 ~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~--~~~~v~i~~p~~~~~il~~ 83 (109)
-++||+..- .-...+.++..+||.|..+.+. +.-.|...+++.++.++..
T Consensus 18 l~V~nLp~~----~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 18 VVVSGLPPS----GSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRK 69 (108)
T ss_dssp EEEESCCSS----CCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCC----CCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHH
Confidence 345766532 2335667788889998877653 4556668899999888864
No 111
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=31.39 E-value=59 Score=16.82 Aligned_cols=47 Identities=4% Similarity=-0.012 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCeeEEecC----CccEEEEeCHHHHHHHHhh-CCCCCCCCC
Q psy1306 46 QAFKVISKTHGSIFRLKLG----VVPAIVVNGLENIKEVLFV-KATDFDGRP 92 (109)
Q Consensus 46 ~~~~~~~~~~g~i~~~~~~----~~~~v~i~~p~~~~~il~~-~~~~~~~r~ 92 (109)
..+.++..+||.+..+.+. +.-.|-..+++.++.++.. +...+.++.
T Consensus 15 ~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 66 (101)
T 2hvz_A 15 GELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSR 66 (101)
T ss_dssp HHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCC
T ss_pred HHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcE
Confidence 4566777889998777652 2345557899999888763 333444444
No 112
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=30.88 E-value=61 Score=16.89 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=36.1
Q ss_pred ceeecccccCCCCcHHHHHHHHHHHcCCeeEEecC---------CccEEEEeCHHHHHHHHhh-CCCCCCCCC
Q psy1306 30 PIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLG---------VVPAIVVNGLENIKEVLFV-KATDFDGRP 92 (109)
Q Consensus 30 ~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~---------~~~~v~i~~p~~~~~il~~-~~~~~~~r~ 92 (109)
-++||+..-. -...+.++..+||.|..+.+. +.-.|...+.+.++.++.. +...+.++.
T Consensus 26 l~V~nlp~~~----t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 94 (106)
T 1p27_B 26 LFVTGVHEEA----TEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 94 (106)
T ss_dssp EEEECCCTTC----CHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred EEEeCCCCCC----CHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 3456665422 234567778889998777652 1234557899999888864 444454443
No 113
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=30.45 E-value=66 Score=17.16 Aligned_cols=49 Identities=8% Similarity=0.069 Sum_probs=31.6
Q ss_pred ceeecccccCCCCcHHHHHHHHHHHcCCeeEEecC-Cc--cEEEEeCHHHHHHHHh
Q psy1306 30 PIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLG-VV--PAIVVNGLENIKEVLF 82 (109)
Q Consensus 30 ~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-~~--~~v~i~~p~~~~~il~ 82 (109)
-++||+..-.. ...+.++..+||+|..+.+. ++ -.|-..+++.++..+.
T Consensus 10 L~VgNL~~~~t----e~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~ 61 (89)
T 2wbr_A 10 LLLKNLTAQID----GPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQM 61 (89)
T ss_dssp EEEECCCTTCC----CHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred EEEeCCCccCC----HHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHH
Confidence 34577764322 25778888899999887752 23 3455778877766654
No 114
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=30.19 E-value=64 Score=16.86 Aligned_cols=57 Identities=7% Similarity=0.117 Sum_probs=34.2
Q ss_pred ceeecccccCCCCcHHHHHHHHHHHcCCeeEEecC-----C---ccEEEEeCHHHHHHHHhh-CCCCCCC
Q psy1306 30 PIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLG-----V---VPAIVVNGLENIKEVLFV-KATDFDG 90 (109)
Q Consensus 30 ~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-----~---~~~v~i~~p~~~~~il~~-~~~~~~~ 90 (109)
-+++|+..-. -...+.++..+||.|..+.+. . .-.|-..+++.++.++.. +...+.+
T Consensus 32 l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 97 (107)
T 3ulh_A 32 LLVSNLDFGV----SDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG 97 (107)
T ss_dssp EEEESCCTTC----CHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 4456665322 234566777889998766542 1 234557799999888864 4334433
No 115
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.96 E-value=62 Score=16.68 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=35.9
Q ss_pred CceeecccccCCCCcHHHHHHHHHHHcCCeeEEecC--------CccEEEEeCHHHHHHHHhh-CCCCCCCC
Q psy1306 29 LPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLG--------VVPAIVVNGLENIKEVLFV-KATDFDGR 91 (109)
Q Consensus 29 ~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~--------~~~~v~i~~p~~~~~il~~-~~~~~~~r 91 (109)
.-+++|+..-. -...+.++..+||.+..+.+. +.-.|...+++.++.++.. +...+.++
T Consensus 19 ~l~v~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 86 (100)
T 2do4_A 19 KLFISGLPFSC----TKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKEN 86 (100)
T ss_dssp CEEEESCCTTC----CHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSC
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34456665322 234567777889998776652 1234557899999888854 33344443
No 116
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=29.64 E-value=79 Score=17.76 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCCeeEEecCC---------ccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 46 QAFKVISKTHGSIFRLKLGV---------VPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 46 ~~~~~~~~~~g~i~~~~~~~---------~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
..+.+...+||.+..+.+.. .-.|-..+++.+..++..+...+.+++
T Consensus 102 ~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 157 (167)
T 2cjk_A 102 KEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRK 157 (167)
T ss_dssp HHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSC
T ss_pred HHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeE
Confidence 45667778899988777532 224557799999999875444454443
No 117
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.42 E-value=70 Score=17.06 Aligned_cols=57 Identities=11% Similarity=0.027 Sum_probs=35.8
Q ss_pred ceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCC---------ccEEEEeCHHHHHHHHhhCCCCCCC
Q psy1306 30 PIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGV---------VPAIVVNGLENIKEVLFVKATDFDG 90 (109)
Q Consensus 30 ~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~---------~~~v~i~~p~~~~~il~~~~~~~~~ 90 (109)
-+++|+..-. -...+.++..+||.|..+.+.. .-.|...+.+.++.++......+.+
T Consensus 20 l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g 85 (116)
T 2cqd_A 20 IFVGGLPYHT----TDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDG 85 (116)
T ss_dssp EEEECCCSSC----CHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETT
T ss_pred EEEeCCCCCC----CHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCC
Confidence 3456665322 2345677778899988777633 2345578999999998654333333
No 118
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=29.09 E-value=67 Score=16.74 Aligned_cols=51 Identities=10% Similarity=0.001 Sum_probs=34.4
Q ss_pred CceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCC-ccEEEEeCHHHHHHHHhh
Q psy1306 29 LPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGV-VPAIVVNGLENIKEVLFV 83 (109)
Q Consensus 29 ~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-~~~v~i~~p~~~~~il~~ 83 (109)
.-+++|+..-. -...+.++..+||.|..+.+.. .-.|-..+++.++.++..
T Consensus 13 ~l~V~nl~~~~----t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~ 64 (103)
T 2dgu_A 13 VLFVRNLANTV----TEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEE 64 (103)
T ss_dssp CEEEECCCTTC----CHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHH
Confidence 34567765322 2345667778899998887643 445668899999888863
No 119
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=28.89 E-value=62 Score=16.30 Aligned_cols=59 Identities=10% Similarity=0.141 Sum_probs=35.9
Q ss_pred ceeecccccCCCCcHHHHHHHHHHHcCCeeEEecC-------CccEEEEeCHHHHHHHHhh-CCCCCCCCC
Q psy1306 30 PIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLG-------VVPAIVVNGLENIKEVLFV-KATDFDGRP 92 (109)
Q Consensus 30 ~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-------~~~~v~i~~p~~~~~il~~-~~~~~~~r~ 92 (109)
-+++|+..- .-...+.++..+||.+..+.+. +.-.|...+.+.++.++.. +...+.++.
T Consensus 11 l~V~nlp~~----~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 77 (92)
T 2dgv_A 11 IFVRNLPFD----FTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE 77 (92)
T ss_dssp EEECSCCTT----CCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC
T ss_pred EEEeCCCCC----CCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 345666532 2334567778889988766542 1234557799999888764 434455443
No 120
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=28.60 E-value=66 Score=19.36 Aligned_cols=49 Identities=10% Similarity=0.222 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCCeeEEecC--------CccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 44 PYQAFKVISKTHGSIFRLKLG--------VVPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 44 ~~~~~~~~~~~~g~i~~~~~~--------~~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
-...+.++..+||.|..+.+. +.-.|...+++.++.++......+.+++
T Consensus 122 t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~ 178 (193)
T 2voo_A 122 TLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETD 178 (193)
T ss_dssp CHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEE
T ss_pred CHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 345677888899998766542 2234557799999999865444454443
No 121
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.46 E-value=77 Score=17.25 Aligned_cols=54 Identities=15% Similarity=0.054 Sum_probs=35.5
Q ss_pred CCCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecC---CccEEEEeCHHHHHHHHh
Q psy1306 25 MPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLG---VVPAIVVNGLENIKEVLF 82 (109)
Q Consensus 25 gp~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~---~~~~v~i~~p~~~~~il~ 82 (109)
.+...-++||+..-. -...+.++..+||.|..+.+. +.-.|...+.+.++..+.
T Consensus 14 ~~~~~LfV~nLp~~v----te~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~ 70 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDV----TEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 70 (105)
T ss_dssp CCCCEEEECSCCTTS----CHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 333444567776422 224567778889998887753 334566789998888876
No 122
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=28.20 E-value=75 Score=17.07 Aligned_cols=58 Identities=12% Similarity=0.092 Sum_probs=35.7
Q ss_pred ceeecccccCCCCcHHHHHHHHHHHcCCeeEEecC-----C----ccEEEEeCHHHHHHHHhh-CCCCCCCC
Q psy1306 30 PIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLG-----V----VPAIVVNGLENIKEVLFV-KATDFDGR 91 (109)
Q Consensus 30 ~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-----~----~~~v~i~~p~~~~~il~~-~~~~~~~r 91 (109)
-++||+..-. -...+.++..+||.|..+.+. + .-.|...+++.++.++.. +...+.++
T Consensus 9 lfV~nL~~~~----te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr 76 (110)
T 3s8s_A 9 VTFARLNDNV----RETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGN 76 (110)
T ss_dssp EEEESCCTTC----CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEEECCCCCC----CHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 3557765322 234567778889998877652 1 124667799999888753 33344443
No 123
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.06 E-value=76 Score=17.05 Aligned_cols=48 Identities=6% Similarity=-0.004 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHHcCCeeEEecCC-ccEEEEeCHHHHHHHHhhCCCCCCC
Q psy1306 43 VPYQAFKVISKTHGSIFRLKLGV-VPAIVVNGLENIKEVLFVKATDFDG 90 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~~~-~~~v~i~~p~~~~~il~~~~~~~~~ 90 (109)
+....+.+....||.+..+++.. +-.|...+.+.+..++.-+...+.+
T Consensus 27 ~l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~mnG~~v~G 75 (91)
T 2dnr_A 27 ALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLSLNGKELLN 75 (91)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGGGTTCEETT
T ss_pred HHHHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHhcCCeEeCC
Confidence 45566777778899999888644 4455577888888887644444433
No 124
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.82 E-value=52 Score=17.19 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=34.8
Q ss_pred ceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCC---------ccEEEEeCHHHHHHHHhhCCCCCCC
Q psy1306 30 PIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGV---------VPAIVVNGLENIKEVLFVKATDFDG 90 (109)
Q Consensus 30 ~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~---------~~~v~i~~p~~~~~il~~~~~~~~~ 90 (109)
-+++|+..-. -...+.++..+||.|..+.+.. .-.|...+++.++.++..+...+.+
T Consensus 19 l~V~nlp~~~----t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g 84 (105)
T 2dh8_A 19 LFVGGLDWST----TQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDG 84 (105)
T ss_dssp ECCBSCCTTC----CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETT
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECC
Confidence 3446665322 2345667778899987665422 2345577999999888764434443
No 125
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.57 E-value=67 Score=16.28 Aligned_cols=60 Identities=22% Similarity=0.223 Sum_probs=37.4
Q ss_pred ceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCC---------ccEEEEeCHHHHHHHHhh-CCCCCCCCCC
Q psy1306 30 PIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGV---------VPAIVVNGLENIKEVLFV-KATDFDGRPN 93 (109)
Q Consensus 30 ~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~---------~~~v~i~~p~~~~~il~~-~~~~~~~r~~ 93 (109)
-+++|+..-. -...+.++..+||.+..+.+.. .-.|...+++.++.++.. +...+.+++.
T Consensus 8 l~v~nlp~~~----t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (95)
T 2dnz_A 8 LYVGSLHFNI----TEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 77 (95)
T ss_dssp EEEESCCTTC----CHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 3457765322 2345677778899987776522 234557899999888863 4445555543
No 126
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.59 E-value=57 Score=17.45 Aligned_cols=56 Identities=11% Similarity=0.221 Sum_probs=34.3
Q ss_pred eeecccccCCCCcHHHHHHHHHHHcCCeeEEecCC---------ccEEEEeCHHHHHHHHhhCCCCCCC
Q psy1306 31 IIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGV---------VPAIVVNGLENIKEVLFVKATDFDG 90 (109)
Q Consensus 31 ~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~---------~~~v~i~~p~~~~~il~~~~~~~~~ 90 (109)
++||+..-. -...+.++..+||.|..+.+.. .-.|...+++.++.++..+...+.+
T Consensus 31 ~V~nLp~~~----te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g 95 (116)
T 1x4b_A 31 FIGGLSFET----TEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDG 95 (116)
T ss_dssp EEECCTTCC----CHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETT
T ss_pred EEeCCCCCC----CHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECC
Confidence 456664322 2345677778899887666422 2345577999999998764333433
No 127
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=26.00 E-value=1e+02 Score=17.77 Aligned_cols=58 Identities=9% Similarity=0.029 Sum_probs=35.4
Q ss_pred ceeecccccCCCCcHHHHHHHHHHHcCCeeEEecC---------CccEEEEeCHHHHHHHHhh-CCCCCCCC
Q psy1306 30 PIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLG---------VVPAIVVNGLENIKEVLFV-KATDFDGR 91 (109)
Q Consensus 30 ~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~---------~~~~v~i~~p~~~~~il~~-~~~~~~~r 91 (109)
-++||+..- .-...+..+..+||.|..+.+. +.-+|...+++.++.++.. +...+.++
T Consensus 75 l~V~nLp~~----~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 142 (165)
T 1rk8_A 75 LFVTSIHEE----AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ 142 (165)
T ss_dssp EEEESCCTT----CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEEeCCCCC----CCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 345666532 2334567788889998776652 1234557799998888753 33344443
No 128
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.83 E-value=65 Score=15.51 Aligned_cols=46 Identities=9% Similarity=0.108 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCeeEEecCC---------ccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 47 AFKVISKTHGSIFRLKLGV---------VPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 47 ~~~~~~~~~g~i~~~~~~~---------~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
.+.+...+||++..+.+.. .-.|...+++.++.++......+.++.
T Consensus 16 ~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 70 (77)
T 1uaw_A 16 GLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKT 70 (77)
T ss_dssp HHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCC
T ss_pred HHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEE
Confidence 4566777899876555421 123446788999888865543444443
No 129
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=25.62 E-value=78 Score=16.39 Aligned_cols=50 Identities=16% Similarity=0.235 Sum_probs=33.9
Q ss_pred ceeecccc-cCCCCcHHHHHHHHHHHcCCeeEEecC-CccEEEEeCHHHHHHHHhh
Q psy1306 30 PIIGHLHL-LGQYEVPYQAFKVISKTHGSIFRLKLG-VVPAIVVNGLENIKEVLFV 83 (109)
Q Consensus 30 ~~~G~~~~-~~~~~~~~~~~~~~~~~~g~i~~~~~~-~~~~v~i~~p~~~~~il~~ 83 (109)
-++||+.. -. -...+.++..+||.+..+.+. +.-.|...+.+.++.++..
T Consensus 25 l~V~nLp~~~~----t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~ 76 (97)
T 2xnq_A 25 LFIGNLPLKNV----SKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEX 76 (97)
T ss_dssp EEEESCCSSCC----CHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCcccC----CHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHH
Confidence 44577763 22 224567778889999887763 3445667899999888863
No 130
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=25.25 E-value=1e+02 Score=17.85 Aligned_cols=56 Identities=9% Similarity=0.113 Sum_probs=35.4
Q ss_pred CceeecccccCCCCcHHHHHHHHHHHcCCeeEEecC-----C----ccEEEEeCHHHHHHHHhhCCCCC
Q psy1306 29 LPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLG-----V----VPAIVVNGLENIKEVLFVKATDF 88 (109)
Q Consensus 29 ~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-----~----~~~v~i~~p~~~~~il~~~~~~~ 88 (109)
.-++||+..-. -...+.++..+||.|..+.+. + .-.|...+++.++.++..+...+
T Consensus 15 ~l~V~nLp~~~----te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~ 79 (196)
T 1l3k_A 15 KLFIGGLSFET----TDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 79 (196)
T ss_dssp EEEEESCCTTC----CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEE
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEE
Confidence 34557765322 234567788889998766542 1 23466889999999987643333
No 131
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=25.04 E-value=1.3e+02 Score=18.76 Aligned_cols=55 Identities=11% Similarity=0.097 Sum_probs=34.4
Q ss_pred CceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCC------ccEEEEeCHHHHHHHHhh
Q psy1306 29 LPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGV------VPAIVVNGLENIKEVLFV 83 (109)
Q Consensus 29 ~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~------~~~v~i~~p~~~~~il~~ 83 (109)
.-++||+..-...+++...+.++..+||.|..+.+.. .-.|...+++.++.++..
T Consensus 11 ~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~ 71 (282)
T 3pgw_A 11 TIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71 (282)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHH
Confidence 3456777643321123334667888999988776422 345567899999888743
No 132
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.93 E-value=88 Score=16.76 Aligned_cols=54 Identities=9% Similarity=-0.086 Sum_probs=35.9
Q ss_pred CCCCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCC---ccEEEEeCHHHHHHHHh
Q psy1306 26 PWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGV---VPAIVVNGLENIKEVLF 82 (109)
Q Consensus 26 p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~---~~~v~i~~p~~~~~il~ 82 (109)
|...-++||+..-. .-...+.++..+||.|..+.+.. .-.|-..+.+.++.++.
T Consensus 14 p~~~l~V~nLp~~~---~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 70 (102)
T 1x4d_A 14 TRRVVHIMDFQRGK---NLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVD 70 (102)
T ss_dssp CCCEEEEESCCCSS---SHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCc---CCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 33344567776411 23345777888999998888643 34566789998888875
No 133
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=24.76 E-value=74 Score=15.82 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCCeeEEecCC---------ccEEEEeCHHHHHHHHhhCCCCCCCC
Q psy1306 46 QAFKVISKTHGSIFRLKLGV---------VPAIVVNGLENIKEVLFVKATDFDGR 91 (109)
Q Consensus 46 ~~~~~~~~~~g~i~~~~~~~---------~~~v~i~~p~~~~~il~~~~~~~~~r 91 (109)
..+.++..+||.+..+.+.. .-.|...+++.++.++.-+...+.++
T Consensus 21 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~ 75 (89)
T 3ucg_A 21 EELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGR 75 (89)
T ss_dssp HHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTE
T ss_pred HHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCc
Confidence 45667778899987765421 23455778998888874344444443
No 134
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.63 E-value=81 Score=16.24 Aligned_cols=61 Identities=15% Similarity=0.261 Sum_probs=36.9
Q ss_pred CCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCC---------ccEEEEeCHHHHHHHHhh-CCCCCCCCC
Q psy1306 28 ALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGV---------VPAIVVNGLENIKEVLFV-KATDFDGRP 92 (109)
Q Consensus 28 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~---------~~~v~i~~p~~~~~il~~-~~~~~~~r~ 92 (109)
..-+++|+..-. -...+.++..+||.|..+.+.. .-.|...+++.++.++.. +...+.++.
T Consensus 13 ~~l~v~nLp~~~----t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 1x5s_A 13 GKLFVGGLSFDT----NEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ 83 (102)
T ss_dssp SEEEEESCCTTC----CHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC
T ss_pred CEEEEECCCCCC----CHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 334557765322 2345667777899987776633 224557799999888743 444555544
No 135
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.52 E-value=81 Score=16.20 Aligned_cols=59 Identities=8% Similarity=0.002 Sum_probs=36.0
Q ss_pred ceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCC---ccEEEEeCHHHHHHHHhh-CCCCCCCCC
Q psy1306 30 PIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGV---VPAIVVNGLENIKEVLFV-KATDFDGRP 92 (109)
Q Consensus 30 ~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~---~~~v~i~~p~~~~~il~~-~~~~~~~r~ 92 (109)
-++||+..-. -...+.++..+||.+..+.+.. .-.|...+++.++.++.. +...+.++.
T Consensus 18 l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~ 80 (99)
T 2cpj_A 18 LFVGNLPPDI----TEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQ 80 (99)
T ss_dssp EEEESCCTTC----CHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBC
T ss_pred EEEeCCCCCC----CHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCce
Confidence 3457765322 2345677788899988777633 234556788888887744 334454444
No 136
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.15 E-value=75 Score=15.69 Aligned_cols=50 Identities=12% Similarity=-0.012 Sum_probs=31.3
Q ss_pred CceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCC---------ccEEEEeCHHHHHHHHh
Q psy1306 29 LPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGV---------VPAIVVNGLENIKEVLF 82 (109)
Q Consensus 29 ~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~---------~~~v~i~~p~~~~~il~ 82 (109)
.-++||+..-. -...+.++..+||.+..+.+.. .-.|...+++.++.++.
T Consensus 7 ~l~v~nlp~~~----t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (85)
T 1x4e_A 7 GLYIRGLQPGT----TDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 65 (85)
T ss_dssp EEEEESCCTTC----CHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 33457765322 2345666777899987776421 23455789999888875
No 137
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.86 E-value=86 Score=16.27 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=38.0
Q ss_pred CceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCCc----------cEEEEeCHHHHHHHHhh--CCCCCCCCC
Q psy1306 29 LPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVV----------PAIVVNGLENIKEVLFV--KATDFDGRP 92 (109)
Q Consensus 29 ~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~----------~~v~i~~p~~~~~il~~--~~~~~~~r~ 92 (109)
.-++||+..-. -...+.++..+||.|..+.+... -.|...+++.++.++.. +...+.++.
T Consensus 17 ~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 17 KILVRNIPFQA----NQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp CEEEESCCTTC----CHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred EEEEeCCCCcC----CHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 34557765322 23456777888999988876332 24557799999888864 344555544
No 138
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=23.85 E-value=88 Score=16.35 Aligned_cols=57 Identities=9% Similarity=0.035 Sum_probs=34.5
Q ss_pred eeecccccCCCCcHHHHHHHHHHHcCCeeEEecC-----Cc----cEEEEeCHHHHHHHHhh-CCCCCCCC
Q psy1306 31 IIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLG-----VV----PAIVVNGLENIKEVLFV-KATDFDGR 91 (109)
Q Consensus 31 ~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-----~~----~~v~i~~p~~~~~il~~-~~~~~~~r 91 (109)
++||+..-. -...+.++..+||.|..+.+. +. -.|-..+++.++.++.. +...+.++
T Consensus 23 fV~nLp~~~----te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr 89 (99)
T 4fxv_A 23 IVNYLPQNM----TQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSK 89 (99)
T ss_dssp EEESCCTTC----CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEeCCCCCC----CHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 456665322 234566777889998776642 11 23557799999888754 33344433
No 139
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=23.68 E-value=95 Score=16.71 Aligned_cols=59 Identities=19% Similarity=0.195 Sum_probs=36.3
Q ss_pred ceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCC--------ccEEEEeCHHHHHHHHhh-CCCCCCCCC
Q psy1306 30 PIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGV--------VPAIVVNGLENIKEVLFV-KATDFDGRP 92 (109)
Q Consensus 30 ~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~--------~~~v~i~~p~~~~~il~~-~~~~~~~r~ 92 (109)
-++||+..-. -...+.++..+||.|..+.+.. .-.|...+.+.++.++.. +...+.++.
T Consensus 10 l~V~nLp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 77 (116)
T 2fy1_A 10 LFIGGLNRET----NEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKA 77 (116)
T ss_dssp EEEECCTTTC----CHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSB
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3457765322 2345677778899887766522 234557799999988864 333454443
No 140
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=23.55 E-value=87 Score=16.21 Aligned_cols=57 Identities=7% Similarity=0.024 Sum_probs=34.9
Q ss_pred ceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCC--------ccEEEEeCHHHHHHHHhh-CCCCCCC
Q psy1306 30 PIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGV--------VPAIVVNGLENIKEVLFV-KATDFDG 90 (109)
Q Consensus 30 ~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~--------~~~v~i~~p~~~~~il~~-~~~~~~~ 90 (109)
-++||+..-. -...+.++..+||.|..+.+.. .-.|...+++.++.++.. +...+.+
T Consensus 18 l~v~nLp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 18 LFVGMLNKQQ----SEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp EEEESCCTTC----CHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 3457765322 2345677778899987766531 234557899999888753 3334443
No 141
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=23.20 E-value=1.3e+02 Score=17.95 Aligned_cols=48 Identities=6% Similarity=0.070 Sum_probs=31.8
Q ss_pred eecccccCCCCcHHHHHHHHHHHcCCeeEEecCC-----ccEEEEeCHHHHHHHHhh
Q psy1306 32 IGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGV-----VPAIVVNGLENIKEVLFV 83 (109)
Q Consensus 32 ~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-----~~~v~i~~p~~~~~il~~ 83 (109)
+||+..-. -...+.+...+||.|-.+.+.. .-.|...|.+.++..+..
T Consensus 51 VgNL~~~v----ted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~ 103 (164)
T 1sjr_A 51 VENLFYPV----TLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 103 (164)
T ss_dssp ECSCCSCC----CHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHH
T ss_pred EeCcCCCC----CHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHH
Confidence 57765322 2345677888899988777631 345567799988888764
No 142
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.78 E-value=89 Score=16.55 Aligned_cols=57 Identities=7% Similarity=0.047 Sum_probs=34.2
Q ss_pred ceeecccccCCCCcHHHHHHHHHHHcCCeeEEecC-------CccEEEEeCHHHHHHHHhh-CCCCCCC
Q psy1306 30 PIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLG-------VVPAIVVNGLENIKEVLFV-KATDFDG 90 (109)
Q Consensus 30 ~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-------~~~~v~i~~p~~~~~il~~-~~~~~~~ 90 (109)
-++||+..-. -...+.++..+||.|..+.+. +.-.|...+.+.++.++.. +...+.+
T Consensus 32 l~V~nLp~~~----te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g 96 (109)
T 2err_A 32 LHVSNIPFRF----RDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG 96 (109)
T ss_dssp EEEESCCTTC----CHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETT
T ss_pred EEEECCCCcC----CHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3456665322 234567778889988766653 2234557788888888763 3333433
No 143
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.75 E-value=86 Score=15.83 Aligned_cols=50 Identities=10% Similarity=0.092 Sum_probs=33.5
Q ss_pred ceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCC-ccEEEEeCHHHHHHHHhh
Q psy1306 30 PIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGV-VPAIVVNGLENIKEVLFV 83 (109)
Q Consensus 30 ~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-~~~v~i~~p~~~~~il~~ 83 (109)
-++||+..-. -...+.++..+||.|..+.+.. .-.|...+++.++.++..
T Consensus 13 l~V~nLp~~~----t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~ 63 (92)
T 2dgt_A 13 LHVGNISPTC----TNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 63 (92)
T ss_dssp EEEESCCSSC----CHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHH
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 3457765322 3345677888899988887643 344557799999888753
No 144
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=22.62 E-value=99 Score=16.49 Aligned_cols=59 Identities=12% Similarity=0.024 Sum_probs=37.7
Q ss_pred eeecccccCCCCcHHHHHHHHHHHcCCeeEEecCC---ccEEEEeCHHHHHHHHhh-CCCCCCCCCC
Q psy1306 31 IIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGV---VPAIVVNGLENIKEVLFV-KATDFDGRPN 93 (109)
Q Consensus 31 ~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~---~~~v~i~~p~~~~~il~~-~~~~~~~r~~ 93 (109)
+++|+..- .-...+.++..+||.|..+.+.. .-.|...+++.++.++.. +...+.+++.
T Consensus 14 ~V~nLp~~----~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 76 (111)
T 1whx_A 14 LAKNLPAG----TLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPL 76 (111)
T ss_dssp EEESCCTT----CCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred EEeCCCCC----CCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Confidence 45665422 23346777888899998887633 345567899998888754 4445655543
No 145
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.58 E-value=92 Score=16.12 Aligned_cols=59 Identities=10% Similarity=0.079 Sum_probs=37.9
Q ss_pred ceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCC---------ccEEEEeCHHHHHHHHhh-CCCCCCCCC
Q psy1306 30 PIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGV---------VPAIVVNGLENIKEVLFV-KATDFDGRP 92 (109)
Q Consensus 30 ~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~---------~~~v~i~~p~~~~~il~~-~~~~~~~r~ 92 (109)
-++||+..-. -...+.++..+||.|..+.+.. .-.|...+++.++.++.. +...+.+++
T Consensus 18 l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (105)
T 1x5u_A 18 VYVGGLDEKV----SEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP 86 (105)
T ss_dssp EEEECCCTTC----CHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 4457765322 2345677788899998877633 234567899999999874 434455544
No 146
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=22.55 E-value=88 Score=15.92 Aligned_cols=48 Identities=4% Similarity=-0.009 Sum_probs=32.0
Q ss_pred CceeecccccCCCCcHHHHHHHHHHHcCCeeEEecC----CccEEEEeCHHHHHHH
Q psy1306 29 LPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLG----VVPAIVVNGLENIKEV 80 (109)
Q Consensus 29 ~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~----~~~~v~i~~p~~~~~i 80 (109)
.-++||+..-. -...+.+...+||.|..+.+. +.-.|...+++.++.+
T Consensus 13 ~l~V~~Lp~~~----te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 13 KVFVGRCTEDM----TAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp EEEEESCCTTC----CHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHH
T ss_pred EEEEeCCCCCC----CHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHH
Confidence 34557765322 234567778889999888864 3345667899988854
No 147
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.26 E-value=1e+02 Score=16.66 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHHcCCeeEEec-CCccEEEEeCHHHHHHHHhhCCCCCCC
Q psy1306 43 VPYQAFKVISKTHGSIFRLKL-GVVPAIVVNGLENIKEVLFVKATDFDG 90 (109)
Q Consensus 43 ~~~~~~~~~~~~~g~i~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~~ 90 (109)
+....+.+....||.+..+++ ..+-+|...|.+.+..++.-+...+.+
T Consensus 36 ~l~~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~ldG~~v~G 84 (95)
T 1ufw_A 36 DLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLDVDGMKVKG 84 (95)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHHGGGSEETT
T ss_pred HHHHHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHhcCCeeeCC
Confidence 455556777777998888876 445455567888887777644444433
No 148
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=22.26 E-value=97 Score=16.29 Aligned_cols=57 Identities=11% Similarity=0.113 Sum_probs=34.7
Q ss_pred ceeeccccc-CCCCcHHHHHHHHHHHcCCeeEEec-CCccEEEEeCHHHHHHHHhh-CCCCCCC
Q psy1306 30 PIIGHLHLL-GQYEVPYQAFKVISKTHGSIFRLKL-GVVPAIVVNGLENIKEVLFV-KATDFDG 90 (109)
Q Consensus 30 ~~~G~~~~~-~~~~~~~~~~~~~~~~~g~i~~~~~-~~~~~v~i~~p~~~~~il~~-~~~~~~~ 90 (109)
-++||+..- .. ...+.++..+||.|..+.+ -+.-.|...+++.++.++.. +...+.+
T Consensus 30 l~V~nl~~~~~t----~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g 89 (110)
T 1wf1_A 30 VFIGNLNTALVK----KSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAG 89 (110)
T ss_dssp EEECSCCCSSCC----HHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEETT
T ss_pred EEEeCCCcccCC----HHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 345776543 22 2456777788999877776 22344556788888888743 3333433
No 149
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=22.04 E-value=85 Score=15.50 Aligned_cols=56 Identities=18% Similarity=0.138 Sum_probs=34.3
Q ss_pred eeecccccCCCCcHHHHHHHHHHHcCCeeEEecC----------CccEEEEeCHHHHHHHHhh-CCCCCCC
Q psy1306 31 IIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLG----------VVPAIVVNGLENIKEVLFV-KATDFDG 90 (109)
Q Consensus 31 ~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~----------~~~~v~i~~p~~~~~il~~-~~~~~~~ 90 (109)
++||+..-. -...+.++..+||.+..+.+. +.-.|...+++.++.++.. +...+.+
T Consensus 8 ~V~nlp~~~----t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (88)
T 4a8x_A 8 HIGRLTRNV----TKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG 74 (88)
T ss_dssp EEECCCTTC----CHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred EEeCCCCCC----CHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC
Confidence 456664322 234566777889998777652 1234557799999988864 4334443
No 150
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.91 E-value=89 Score=15.73 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=33.0
Q ss_pred CCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecC-----C----ccEEEEeCHHHHHHHHhh
Q psy1306 28 ALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLG-----V----VPAIVVNGLENIKEVLFV 83 (109)
Q Consensus 28 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-----~----~~~v~i~~p~~~~~il~~ 83 (109)
..-+++|+..-. -...+.++..+||.+..+.+. + .-.|...+++.++.++..
T Consensus 16 ~~l~v~nlp~~~----t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (95)
T 2cqc_A 16 CCLGVFGLSLYT----TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 76 (95)
T ss_dssp GCEEEESCCSSC----CHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CEEEEECCCCCC----CHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 334557765322 234567777889998776652 1 124557799999888864
No 151
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.90 E-value=98 Score=16.18 Aligned_cols=59 Identities=8% Similarity=-0.078 Sum_probs=36.4
Q ss_pred ceeecccccCCCCcHHHHHHHHHHHcCCeeE-EecC--------CccEEEEeCHHHHHHHHhhCCCCCCCCC
Q psy1306 30 PIIGHLHLLGQYEVPYQAFKVISKTHGSIFR-LKLG--------VVPAIVVNGLENIKEVLFVKATDFDGRP 92 (109)
Q Consensus 30 ~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~-~~~~--------~~~~v~i~~p~~~~~il~~~~~~~~~r~ 92 (109)
-++||+..-. -...+.++..+||.+.. +.+. +.-.|...+++.++.++..+...+.+|.
T Consensus 18 l~V~nLp~~~----te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~ 85 (104)
T 1wg5_A 18 VRLRGLPFGC----SKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 85 (104)
T ss_dssp EEEESCCTTC----CHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSC
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcE
Confidence 3456665322 23456677778887654 4331 2345667899999999977555555553
No 152
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.60 E-value=96 Score=15.99 Aligned_cols=61 Identities=10% Similarity=0.003 Sum_probs=37.1
Q ss_pred CCceeecccccCCCCcHHHHHHHHHHHcCCeeEEecC-------CccEEEEeCHHHHHHHHhh-CCCCCCCCC
Q psy1306 28 ALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLG-------VVPAIVVNGLENIKEVLFV-KATDFDGRP 92 (109)
Q Consensus 28 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-------~~~~v~i~~p~~~~~il~~-~~~~~~~r~ 92 (109)
..-++||+..-. -...+.++..+||.|..+.+. +.-.|...+++.++.++.. +...+.++.
T Consensus 16 ~~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2d9p_A 16 VNLYVKNLDDGI----DDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 84 (103)
T ss_dssp CCEEEECCCTTC----CHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CEEEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 344567765422 224566777789998776653 1234557899999888863 434454443
No 153
>2zdj_A Hypothetical protein TTMA177; alpha and beta proteins (A+B), cystatin-like, NPPSFA; 2.20A {Thermus thermophilus phage tma}
Probab=21.38 E-value=90 Score=15.59 Aligned_cols=20 Identities=10% Similarity=-0.002 Sum_probs=16.2
Q ss_pred CCccEEEEeCHHHHHHHHhh
Q psy1306 64 GVVPAIVVNGLENIKEVLFV 83 (109)
Q Consensus 64 ~~~~~v~i~~p~~~~~il~~ 83 (109)
++...+++.|+..++.||..
T Consensus 10 F~D~Y~l~qdsq~VK~iLey 29 (69)
T 2zdj_A 10 FGDDYTLIQDSQEVKAILEY 29 (69)
T ss_dssp CCTTCEEECCHHHHHHHHHH
T ss_pred cCCCeEEEeCHHHHHHHHHH
Confidence 34467899999999999864
No 154
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.96 E-value=1.1e+02 Score=16.30 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=30.1
Q ss_pred HHHHHHHHHHcCCeeEEecC-----CccEEEEeCHHHHHHHHhh-CCCCCCCCC
Q psy1306 45 YQAFKVISKTHGSIFRLKLG-----VVPAIVVNGLENIKEVLFV-KATDFDGRP 92 (109)
Q Consensus 45 ~~~~~~~~~~~g~i~~~~~~-----~~~~v~i~~p~~~~~il~~-~~~~~~~r~ 92 (109)
...+.+...+||.|..+.+. +.-.|...+++.++.++.. +...+.+++
T Consensus 40 e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 93 (112)
T 2dit_A 40 REDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQ 93 (112)
T ss_dssp HHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEE
T ss_pred HHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 35667778889988776652 2334556788888888754 333444443
No 155
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.63 E-value=99 Score=15.76 Aligned_cols=57 Identities=14% Similarity=0.037 Sum_probs=36.5
Q ss_pred CceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCC---ccEEEEeCHHHHHHHHhh-CCCCCC
Q psy1306 29 LPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGV---VPAIVVNGLENIKEVLFV-KATDFD 89 (109)
Q Consensus 29 ~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~---~~~v~i~~p~~~~~il~~-~~~~~~ 89 (109)
.-++||+..-. -...+.++..+||.|..+.+.. .-.|...+.+.++.++.. +...+.
T Consensus 19 ~l~V~nlp~~~----t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 19 RLWVGGLGPNT----SLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp CEEEECCCSSC----CHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 34557765322 2345677788899998887643 334557799999888763 333444
No 156
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.54 E-value=1e+02 Score=15.89 Aligned_cols=50 Identities=10% Similarity=-0.083 Sum_probs=32.4
Q ss_pred CceeecccccCCCCcHHHHHHHHHHHcCCeeEEecCC-------ccEEEEeCHHHHHHHHh
Q psy1306 29 LPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGV-------VPAIVVNGLENIKEVLF 82 (109)
Q Consensus 29 ~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-------~~~v~i~~p~~~~~il~ 82 (109)
.-++||+..-. -...+.++..+||.|..+.+.. .-.|...+++.++.++.
T Consensus 17 ~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cqi_A 17 TLYVGNLSRDV----TEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALA 73 (103)
T ss_dssp EEEEESCCTTC----CHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCccC----CHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHH
Confidence 34457765322 2345667778899987766522 23556789999988876
No 157
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.51 E-value=99 Score=15.72 Aligned_cols=57 Identities=16% Similarity=0.153 Sum_probs=34.9
Q ss_pred ceeecccccCCCCcHHHHHHHHHHHcCCeeEEecC------------CccEEEEeCHHHHHHHHhh-CCCCCCC
Q psy1306 30 PIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLG------------VVPAIVVNGLENIKEVLFV-KATDFDG 90 (109)
Q Consensus 30 ~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~------------~~~~v~i~~p~~~~~il~~-~~~~~~~ 90 (109)
-++||+..-. -...+.++..+||.|..+.+. +.-.|...+++.++.++.. +...+.+
T Consensus 8 l~V~nLp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 77 (98)
T 2cpf_A 8 LFIKNLNFST----TEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG 77 (98)
T ss_dssp EEEESCCTTC----CHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 3457765322 234566777889988766643 1234557799999998874 3333433
No 158
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.21 E-value=1.1e+02 Score=16.14 Aligned_cols=46 Identities=4% Similarity=0.086 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCCeeEEecC---------CccEEEEeCHHHHHHHHhhCCCCCCCC
Q psy1306 46 QAFKVISKTHGSIFRLKLG---------VVPAIVVNGLENIKEVLFVKATDFDGR 91 (109)
Q Consensus 46 ~~~~~~~~~~g~i~~~~~~---------~~~~v~i~~p~~~~~il~~~~~~~~~r 91 (109)
..+.++..+||.|..+.+. +.-.|...+.+.++.++.-+...+.++
T Consensus 40 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~ 94 (114)
T 2cq4_A 40 RDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGV 94 (114)
T ss_dssp HHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTE
T ss_pred HHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCe
Confidence 4567777889998877763 123455778888888874344444443
No 159
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.21 E-value=1.2e+02 Score=16.76 Aligned_cols=50 Identities=14% Similarity=0.023 Sum_probs=33.2
Q ss_pred CceeecccccCCCCcHHHHHHHHHHHcCCeeEEecC---CccEEEEeCHHHHHHHHh
Q psy1306 29 LPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLG---VVPAIVVNGLENIKEVLF 82 (109)
Q Consensus 29 ~~~~G~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~---~~~~v~i~~p~~~~~il~ 82 (109)
.-++||+..-. -...+.++..+||.|..+.+. +.-.|-..+.+.++.++.
T Consensus 33 ~LfVgNLp~~v----te~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~ 85 (119)
T 2ad9_A 33 VIHIRKLPIDV----TEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 85 (119)
T ss_dssp EEEEESCCTTC----CHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHH
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 34567776422 234567788899998877753 234555778888888775
Done!