RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1306
(109 letters)
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 58.8 bits (143), Expect = 2e-11
Identities = 30/82 (36%), Positives = 43/82 (52%)
Query: 24 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 83
P P LP+ G+L LG+ + F + K +G IFRL LG P +V++G E +KEVL
Sbjct: 2 PGPPPLPLFGNLLQLGRKGNLHSVFTKLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVLIK 61
Query: 84 KATDFDGRPNISRYNDLFSGNR 105
K +F GRP+ +
Sbjct: 62 KGEEFSGRPDEPWFATSRGPFL 83
>gnl|CDD|215354 PLN02655, PLN02655, ent-kaurene oxidase.
Length = 466
Score = 48.6 bits (116), Expect = 7e-08
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 29 LPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVK 84
LP+IG+L L + + P++ F S+ +G I+ ++ G +V+N E KE + K
Sbjct: 7 LPVIGNLLQLKE-KKPHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTK 61
>gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase.
Length = 516
Score = 48.3 bits (115), Expect = 9e-08
Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKE 79
LP P P LPIIG++ ++ Q + ++ ++K +G +F +++G + + V+ E ++
Sbjct: 35 LPYPPGPKGLPIIGNMLMMDQ--LTHRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQ 92
Query: 80 VLFVKATDFDGRP 92
VL V+ + F RP
Sbjct: 93 VLQVQDSVFSNRP 105
>gnl|CDD|215583 PLN03112, PLN03112, cytochrome P450 family protein; Provisional.
Length = 514
Score = 47.1 bits (112), Expect = 2e-07
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKE 79
LP P P PI+G+L LG +P++ + K +G + L+LG V AI + E I+E
Sbjct: 33 LP--PGPPRWPIVGNLLQLGP--LPHRDLASLCKKYGPLVYLRLGSVDAITTDDPELIRE 88
Query: 80 VLFVKATDFDGRP 92
+L + F RP
Sbjct: 89 ILLRQDDVFASRP 101
>gnl|CDD|178773 PLN03234, PLN03234, cytochrome P450 83B1; Provisional.
Length = 499
Score = 44.7 bits (105), Expect = 2e-06
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 24 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 83
P P LPIIG+LH + ++ + F+ +SK +G IF +K+G V++ E KE+L
Sbjct: 31 PGPKGLPIIGNLHQMEKFNPQHFLFR-LSKLYGPIFTMKIGGRRLAVISSAELAKELLKT 89
Query: 84 KATDFDGRP 92
+ +F RP
Sbjct: 90 QDLNFTARP 98
>gnl|CDD|173595 PTZ00404, PTZ00404, cytochrome P450; Provisional.
Length = 482
Score = 43.2 bits (102), Expect = 4e-06
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 26 PWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKA 85
P +PI+G+LH LG +P++ +SK +G IFR+ + +V++ I+E+
Sbjct: 34 PIPIPILGNLHQLG--NLPHRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREMFVDNF 91
Query: 86 TDFDGRPNI 94
+F RP I
Sbjct: 92 DNFSDRPKI 100
>gnl|CDD|215371 PLN02687, PLN02687, flavonoid 3'-monooxygenase.
Length = 517
Score = 43.3 bits (102), Expect = 5e-06
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKE 79
LP P W P++G+L LG P+ ++KT+G +FRL+ G V +V +
Sbjct: 35 LPPGPRGW--PVLGNLPQLG--PKPHHTMAALAKTYGPLFRLRFGFVDVVVAASASVAAQ 90
Query: 80 VLFVKATDFDGRP 92
L +F RP
Sbjct: 91 FLRTHDANFSNRP 103
>gnl|CDD|215221 PLN02394, PLN02394, trans-cinnamate 4-monooxygenase.
Length = 503
Score = 41.6 bits (98), Expect = 2e-05
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 24 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 83
P P A+PI G+ +G ++ ++ ++K +G +F L++G +VV+ E KEVL
Sbjct: 33 PGPAAVPIFGNWLQVGD-DLNHRNLAEMAKKYGDVFLLRMGQRNLVVVSSPELAKEVLHT 91
Query: 84 KATDFDGRPNISRYNDLFSGN 104
+ +F R + D+F+G
Sbjct: 92 QGVEFGSRTRNVVF-DIFTGK 111
>gnl|CDD|177725 PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F3'5'H);
Provisional.
Length = 504
Score = 37.9 bits (88), Expect = 3e-04
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKE 79
LP P W P++G L LLG +P+ A ++K +G + LK+G +V + E +
Sbjct: 32 LPPGPRGW--PLLGALPLLG--NMPHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARA 87
Query: 80 VLFVKATDFDGRP 92
L +F RP
Sbjct: 88 FLKTLDINFSNRP 100
>gnl|CDD|178550 PLN02966, PLN02966, cytochrome P450 83A1.
Length = 502
Score = 37.0 bits (85), Expect = 7e-04
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKE 79
LP P P LP+IG+L L + P + F +K +G I ++G +V++ E KE
Sbjct: 30 LPPGPSP--LPVIGNLLQLQKLN-PQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKE 86
Query: 80 VLFVKATDFDGRP 92
+L + +F RP
Sbjct: 87 LLKTQDVNFADRP 99
>gnl|CDD|241500 cd13346, PH-GRAM_MTMR10, Myotubularian (MTM) related 10 protein
(MTMR10) Pleckstrin Homology-Glucosyltransferases,
Rab-like GTPase activators and Myotubularins (PH-GRAM)
domain. MTMR10 is a catalytically inactive phosphatase
that plays a role as an adapter for the phosphatase
myotubularin to regulate myotubularintracellular
location. It contains a Glu residue instead of a
conserved Cys residue in the dsPTPase catalytic loop
which renders it catalytically inactive as a
phosphatase. MTMR10 contains an N-terminal PH-GRAM
domain, a Rac-induced recruitment domain (RID) domain,
an inactive PTP domain, and a SET interaction domain.
Myotubularin-related proteins are a subfamily of
protein tyrosine phosphatases (PTPs) that
dephosphorylate D3-phosphorylated inositol lipids.
Mutations in this family cause the human neuromuscular
disorders myotubular myopathy and type 4B
Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs
5, 9-13) contain naturally occurring substitutions of
residues required for catalysis by PTP family enzymes.
Although these proteins are predicted to be
enzymatically inactive, they are thought to function as
antagonists of endogenous phosphatase activity or
interaction modules. Most MTMRs contain a N-terminal
PH-GRAM domain, a Rac-induced recruitment domain (RID)
domain, a PTP domain (which may be active or inactive),
a SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The GRAM
domain, found in myotubularins, glucosyltransferases,
and other putative membrane-associated proteins, is
part of a larger motif with a pleckstrin homology (PH)
domain fold. The PH domain family possesses multiple
functions including the ability to bind
phosphoinositides via its beta1/beta2, beta3/beta4, and
beta6/beta7 connecting loops and to other proteins.
However, no phosphoinositide binding sites have been
found for the MTMRs to date.
Length = 177
Score = 27.8 bits (62), Expect = 0.99
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 10 NFKLASVISFLPKAPMPWALPIIGHLHLLGQYEVP 44
NFK ISF+ PMP +L LLG+++VP
Sbjct: 52 NFK----ISFITDDPMPLQKFHYKNL-LLGEHDVP 81
>gnl|CDD|183176 PRK11523, PRK11523, DNA-binding transcriptional repressor ExuR;
Provisional.
Length = 253
Score = 26.0 bits (57), Expect = 4.3
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 74 LENIKEVLFVKATDFDGRPNISRYNDLFSGN 104
LEN K++LF + +D D N RY LF+ N
Sbjct: 218 LENTKQMLFNETSD-DFEFNADRY--LFAEN 245
>gnl|CDD|178435 PLN02842, PLN02842, nucleotide kinase.
Length = 505
Score = 26.0 bits (57), Expect = 5.1
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 24/78 (30%)
Query: 30 PIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFD 89
PI+G L + Y Y+ +K + + +G KE + AT F
Sbjct: 438 PIMGALRM--SYPYRYELYKRVDEENG---------------------KEKYIILAT-FS 473
Query: 90 GRPNISRYNDLFSGNREN 107
RP ND FSG +
Sbjct: 474 ERPTPDEINDAFSGRSRD 491
>gnl|CDD|189936 pfam01309, EAV_GS, Equine arteritis virus small envelope
glycoprotein. Equine arteritis virus small envelope
glycoprotein (Gs) is a class I transmembrane protein
which adopts a number of different conformations.
Length = 196
Score = 25.4 bits (55), Expect = 6.5
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 7 LKQNFKLASVISFLPKAPMPWALPIIGHLHLLGQYEVPYQAFKVIS 52
L N+ LA++ P W +P +G LH + + +V++
Sbjct: 118 LYHNYHLANL-----TGPATWVVPTVGQLHFYASSSIFASSVEVLA 158
>gnl|CDD|223621 COG0547, TrpD, Anthranilate phosphoribosyltransferase [Amino acid
transport and metabolism].
Length = 338
Score = 25.6 bits (57), Expect = 6.7
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 34 HLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEV 80
L L+G Y + RL LGV A+VV+GLE + EV
Sbjct: 190 KLQLIGVYHPELV------ELLAEALRL-LGVERALVVHGLEGLDEV 229
>gnl|CDD|225561 COG3016, PhuW, Uncharacterized iron-regulated protein [Function
unknown].
Length = 295
Score = 25.3 bits (55), Expect = 7.7
Identities = 13/68 (19%), Positives = 17/68 (25%), Gaps = 11/68 (16%)
Query: 9 QNFKLASVISFLPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPA 68
+ L P L I G H VPY + L GV
Sbjct: 212 DQAMARRMAKTLILHPDRKVLLIAGSFHTYKGLGVPY-----------HLKDLYPGVKVV 260
Query: 69 IVVNGLEN 76
++ E
Sbjct: 261 VLYPEGEI 268
>gnl|CDD|220914 pfam10950, DUF2775, Protein of unknown function (DUF2775). This
eukaryotic family of proteins has no known function.
Length = 108
Score = 24.7 bits (53), Expect = 8.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 87 DFDGRPNISRYNDLFSGNREN 107
+F+ RPNIS Y+D N+E
Sbjct: 45 EFEPRPNISAYDDNDIDNKEK 65
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.141 0.424
Gapped
Lambda K H
0.267 0.0531 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,674,773
Number of extensions: 490776
Number of successful extensions: 347
Number of sequences better than 10.0: 1
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 20
Length of query: 109
Length of database: 10,937,602
Length adjustment: 74
Effective length of query: 35
Effective length of database: 7,655,406
Effective search space: 267939210
Effective search space used: 267939210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.7 bits)