RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1306
(109 letters)
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 86.4 bits (215), Expect = 2e-21
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 24 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 83
+LP++G L L ++ + F + K +G I+ +++G ++V + KEVL
Sbjct: 11 KSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIK 70
Query: 84 KATDFDGRPNISRYNDLFSGNR 105
K DF GRP ++ + + +
Sbjct: 71 KGKDFSGRPQMATLDIASNNRK 92
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 83.0 bits (206), Expect = 3e-20
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 24 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 83
P PW P++GH+ LG+ P+ A +S+ +G + ++++G P +V++ L+ I++ L
Sbjct: 19 PEPWGWPLLGHVLTLGKN--PHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVR 76
Query: 84 KATDFDGRPNISRYNDLFSGN 104
+ DF GRP++ + G
Sbjct: 77 QGDDFKGRPDLYTSTLITDGQ 97
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 82.6 bits (205), Expect = 4e-20
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 24 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 83
P P+A P+IG+ +GQ + +F +++ +G +F+++LG P +V+NG I + L
Sbjct: 12 PGPFAWPLIGNAAAVGQA--AHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQ 69
Query: 84 KATDFDGRPNISRYNDLFSGN 104
+ + F RP+ + + + G
Sbjct: 70 QGSAFADRPSFASFRVVSGGR 90
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 78.8 bits (195), Expect = 9e-19
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 24 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 83
P P LP +G+L + ++ F + + G +F L+L P +V+NGL ++E L
Sbjct: 13 PGPLPLPGLGNLLHVD-FQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVT 71
Query: 84 KATDFDGRPNISRYNDLFSGNREN 107
D RP + L G R
Sbjct: 72 HGEDTADRPPVPITQILGFGPRSQ 95
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 78.0 bits (193), Expect = 2e-18
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 20 LPKAPMPWALPIIGHLHLLG-QYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIK 78
P P P LP IG+++ L E+P+ + S+ +G IF L LG + +V+NG + +K
Sbjct: 13 FP--PGPPGLPFIGNIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVK 70
Query: 79 EVLFVKATDFDGRPNISRYNDLFSGN 104
E L ++ F RP + + +
Sbjct: 71 ECLVHQSEIFADRPCLPLFMKMTKMG 96
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 76.8 bits (190), Expect = 5e-18
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 24 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 83
P P LP IG+ L E Y + IS+ +G +F + LG +V+ G + ++E L
Sbjct: 13 PGPTPLPFIGNYLQLNT-EQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVD 71
Query: 84 KATDFDGRPNISRYNDLFSGN 104
+A +F GR + ++ +F G
Sbjct: 72 QAEEFSGRGEQATFDWVFKGY 92
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 76.8 bits (190), Expect = 5e-18
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKE 79
LP P P LP++G+L + + + ++F + + +G +F + LG P +V+ G + I+E
Sbjct: 11 LP--PGPSPLPVLGNLLQMDR-KGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIRE 67
Query: 80 VLFVKATDFDGRPNISRYNDLFSGN 104
L +A F GR I+ + +F G
Sbjct: 68 ALVDQAEAFSGRGKIAVVDPIFQGY 92
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 76.4 bits (189), Expect = 6e-18
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 24 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 83
P P LP+IG++ +G + ++ +SK +G +F L G+ P +V++G E +KE L
Sbjct: 14 PGPTPLPVIGNILQIG-IKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALID 72
Query: 84 KATDFDGRPNISRYNDLFSGN 104
+F GR G
Sbjct: 73 LGEEFSGRGIFPLAERANRGF 93
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 73.7 bits (182), Expect = 5e-17
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 24 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 83
P P+ LPIIG+L L + ++F +++ G +F L +G +V++G + +KE L
Sbjct: 13 PGPFPLPIIGNLFQLE-LKNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLD 71
Query: 84 KATDFDGRPNI 94
+F GR ++
Sbjct: 72 YKDEFSGRGDL 82
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 73.8 bits (182), Expect = 5e-17
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKE 79
L +P + G LHLL +++ G ++RL+LG+ +V+N I+E
Sbjct: 25 LRNLHLPP--LVPGFLHLLQPN--LPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEE 80
Query: 80 VLFVKATDFDGRPNISRYNDLFSGNR 105
+ K DF GRP I Y + +
Sbjct: 81 AMIRKWVDFAGRPQIPSYKLVSQRCQ 106
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 67.3 bits (165), Expect = 1e-14
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 7/81 (8%)
Query: 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKE 79
P +P +GH G+ + + + HG IF ++ + V+
Sbjct: 19 EPPLDKGM-IPWLGHALEFGKD--AAKFLTRMKEKHGDIFTVRAAGLYITVLLDSNCYDA 75
Query: 80 VLFVKATDFDGRPNISRYNDL 100
VL +D S L
Sbjct: 76 VL----SDVASLDQTSYAQVL 92
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 62.3 bits (152), Expect = 5e-13
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 24 PMPWALPIIGHLHLL---GQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEV 80
P P P++G L + G + + K +G IFR+KLG ++ + ++ +
Sbjct: 27 PGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEAL 86
Query: 81 LFVKATDFDGRPNI 94
+ + R I
Sbjct: 87 -YRTESAHPQRLEI 99
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR;
2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A*
3mzs_A*
Length = 487
Score = 62.3 bits (152), Expect = 5e-13
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 24 PMPWALPIIGHLHLLGQY--EVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVL 81
P P + H + + + +G I+R KLG V ++ V E++ +
Sbjct: 12 PSPGDNGWLNLYHFWRETGTHKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVALLF 71
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1,
cytochrome P450, endoplasmic reticulum, fatty acid
biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM;
1.62A {Homo sapiens} PDB: 2iag_A*
Length = 498
Score = 62.1 bits (151), Expect = 6e-13
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 12/90 (13%)
Query: 13 LASVISFL--------PKAP--MPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLK 62
+A S L P P ++P +G+ G+ + + HG IF +
Sbjct: 1 MAKKTSSLLSRRRTRRPGEPPLDLGSIPWLGYALDFGKD--AASFLTRMKEKHGDIFTIL 58
Query: 63 LGVVPAIVVNGLENIKEVLFVKATDFDGRP 92
+G V+ + V++ T D
Sbjct: 59 VGGRYVTVLLDPHSYDAVVWEPRTRLDFHA 88
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha
hydroxylase, structural genomics, structural genomics
consortium, SGC, cholesterol metabolism; HET: HEM;
2.15A {Homo sapiens} PDB: 3sn5_A*
Length = 491
Score = 62.0 bits (151), Expect = 7e-13
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 26 PWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKA 85
+P +G G P + + + HG +F KL + + +VL
Sbjct: 19 NGLIPYLGCALQFGA--NPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVL-CHG 75
Query: 86 TDFDGRP 92
FD +
Sbjct: 76 KYFDWKK 82
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 55.4 bits (134), Expect = 2e-10
Identities = 9/69 (13%), Positives = 19/69 (27%), Gaps = 2/69 (2%)
Query: 24 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 83
+ GHL P + + G + +L ++++G +
Sbjct: 8 RVSGGHDEHGHLEEFRTD--PIGLMQRVRDELGDVGTFQLAGKQVVLLSGSHANEFFFRA 65
Query: 84 KATDFDGRP 92
D D
Sbjct: 66 GDDDLDQAK 74
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A*
1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A*
1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A*
3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 55.0 bits (133), Expect = 2e-10
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKE 79
+ + P P + +L LL + P QA I+ G IF+ + ++ IKE
Sbjct: 2 IKEMPQPKTFGELKNLPLLNT-DKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKE 60
Query: 80 VLFVKATDFD 89
D +
Sbjct: 61 ACDESRFDKN 70
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 51.1 bits (123), Expect = 5e-09
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 7/75 (9%)
Query: 20 LPKAPMPW-----ALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGL 74
LP +P +GH G+ P + + + +G +F + + G
Sbjct: 6 LPAGVKSPPYIFSPIPFLGHAIAFGKS--PIEFLENAYEKYGPVFSFTMVGKTFTYLLGS 63
Query: 75 ENIKEVLFVKATDFD 89
+ + K D +
Sbjct: 64 DAAALLFNSKNEDLN 78
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase,
CYP170A1, molecular mechanism, heme, iron,
metal-binding, monooxygenase; HET: HEM; 2.60A
{Streptomyces coelicolor A3} PDB: 3el3_A*
Length = 467
Score = 47.7 bits (114), Expect = 7e-08
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 24 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 83
+P++GH L + P + + HG + R+KLG V E +
Sbjct: 26 VAGGGVPLLGHGWRLARD--PLAFMSQL-RDHGDVVRIKLGPKTVYAVTNPELTGALALN 82
Query: 84 KATDFDGR 91
G
Sbjct: 83 PDYHIAGP 90
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 47.7 bits (114), Expect = 8e-08
Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 24 PMPWALPIIGHLHLLGQ--YEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVL 81
P P IG L G+ + A ++ +G R+ + ++++ ++ ++
Sbjct: 48 PGPGYCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIM 107
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 46.5 bits (111), Expect = 2e-07
Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
Query: 24 PMPWALPIIGHLHLLGQYEVPYQAF-KVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLF 82
P +PI+GH+ G+ P + + IF + + +V
Sbjct: 7 VYPVTVPILGHIIQFGKS--PLGFMQECKRQLKSGIFTINIVGKRVTIVGDPHEHSRFFL 64
Query: 83 VKATDFD 89
+
Sbjct: 65 PRNEVLS 71
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 45.4 bits (108), Expect = 5e-07
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 18 SFLPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENI 77
+ LP P + LP +G + K + G IF+ +L I ++G
Sbjct: 9 NSLPIPPGDFGLPWLGETL---NFLNDGDFGKKRQQQFGPIFKTRLFGKNVIFISGALAN 65
Query: 78 KEVLFVKATDF 88
+ + + F
Sbjct: 66 RFLFTKEQETF 76
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 43.1 bits (102), Expect = 3e-06
Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 6/83 (7%)
Query: 24 PMPWALPIIGH-LHLLGQYEVPYQAF-KVISKTHGSIFRLKLGVVPAIVVNGLENIKEVL 81
+P + + L LL + Y + + +F+ +L I + G E K
Sbjct: 4 QIP-HDKSLDNSLTLLKE---GYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFY 59
Query: 82 FVKATDFDGRPNISRYNDLFSGN 104
LF N
Sbjct: 60 DTDRFQRQNALPKRVQKSLFGVN 82
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 42.8 bits (101), Expect = 5e-06
Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 8/84 (9%)
Query: 20 LPKAPMPWALPIIGH-LHLLGQYEVPYQAFKVISKTHGS-IFRLKLGVVPAIVVNGLENI 77
+PK P L LL PY+ + G+ F + + + G +
Sbjct: 1 MPKTP---HTKGPDETLSLLAD---PYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAA 54
Query: 78 KEVLFVKATDFDGRPNISRYNDLF 101
+ + +G ++ L
Sbjct: 55 EIFYDTTRFEREGAMPVAIQKTLL 78
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 5e-05
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 23/82 (28%)
Query: 18 SFLPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIF-RLK------LGVVPAIV 70
+L P+ + P+IG + L Y V K++ T G + LK G+V A+
Sbjct: 229 DYLLSIPI--SCPLIG-VIQLAHYVV---TAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 71 VNG-------LENIK---EVLF 82
+ +++ VLF
Sbjct: 283 IAETDSWESFFVSVRKAITVLF 304
Score = 33.5 bits (76), Expect = 0.009
Identities = 26/113 (23%), Positives = 38/113 (33%), Gaps = 22/113 (19%)
Query: 12 KLASVISFLP-KAP-----MPWALPIIGHLHLLGQYEVPYQA----FKVISKTHGSIFR- 60
KL FLP +P + A +I L + V + A V GS R
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLI--NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV 470
Query: 61 ----LKLGVVPAIVVNGLENIKEVLFVKAT---DFDGRPNISRYNDLFSGNRE 106
+ +V I+ + + KAT DF G S L N++
Sbjct: 471 LSGSISERIVDCIIRLPV-KWETTTQFKATHILDF-GPGGASGLGVLTHRNKD 521
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 35.3 bits (82), Expect = 0.002
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 36 HLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVL 81
+G V F +K +G + R+ + +++V E++K+ L
Sbjct: 5 DEVG-GRVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFL 49
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 33.4 bits (77), Expect = 0.007
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Query: 28 ALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATD 87
+L L Q P + H +F L L P ++ E ++ L + T
Sbjct: 6 LREAWPYLKDLQQD--PLAVLLAWGRAHPRLF-LPLPRFPLALIFDPEGVEGALLAEGTT 62
Query: 88 FDGR 91
Sbjct: 63 KATF 66
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.019
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 10/34 (29%)
Query: 46 QAFKVISKTHGSIFRLKL---GVVPAIVVNG-LE 75
QA K K S LKL PA+ + +E
Sbjct: 20 QALK---KLQAS---LKLYADDSAPALAIKATME 47
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 26.0 bits (58), Expect = 2.8
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 4/82 (4%)
Query: 24 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 83
P P LP +G++ L ++ K +G ++ G P + + + IK VL
Sbjct: 17 PGPTPLPFLGNI--LSYHKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVK 74
Query: 84 KATD-FDGRPNISRYNDLFSGN 104
+ F R
Sbjct: 75 ECYSVFTNRRPFGP-VGFMKSA 95
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.141 0.424
Gapped
Lambda K H
0.267 0.0803 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,693,864
Number of extensions: 92148
Number of successful extensions: 167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 30
Length of query: 109
Length of database: 6,701,793
Length adjustment: 73
Effective length of query: 36
Effective length of database: 4,663,560
Effective search space: 167888160
Effective search space used: 167888160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.3 bits)