RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1306
(109 letters)
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 463
Score = 75.5 bits (184), Expect = 5e-18
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 24 PMPWALPIIGHLHLLGQY-EVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLF 82
P P LP IG+++ L E+P+ + S+ +G IF L LG + +V+NG + +KE L
Sbjct: 2 PGPPGLPFIGNIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLV 61
Query: 83 VKATDFDGRPNISRYNDLFSGN 104
++ F RP + + +
Sbjct: 62 HQSEIFADRPCLPLFMKMTKMG 83
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 467
Score = 75.5 bits (184), Expect = 5e-18
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKE 79
LP P P LP+IG++ +G + ++ +SK +G +F L G+ P +V++G E +KE
Sbjct: 4 LP--PGPTPLPVIGNILQIGIKD-ISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKE 60
Query: 80 VLFVKATDFDGRPNISRYNDLFSGN 104
L +F GR G
Sbjct: 61 ALIDLGEEFSGRGIFPLAERANRGF 85
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 465
Score = 74.7 bits (182), Expect = 9e-18
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKE 79
LP P P LP++G+L + + ++F + + +G +F + LG P +V+ G + I+E
Sbjct: 3 LP--PGPSPLPVLGNLLQMDRKG-LLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIRE 59
Query: 80 VLFVKATDFDGRPNISRYNDLFSGN 104
L +A F GR I+ + +F G
Sbjct: 60 ALVDQAEAFSGRGKIAVVDPIFQGY 84
>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus
megaterium [TaxId: 1404]}
Length = 453
Score = 74.7 bits (182), Expect = 1e-17
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Query: 22 KAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVL 81
+ P P + +L LL + P QA I+ G IF+ + ++ IKE
Sbjct: 2 EMPQPKTFGELKNLPLLNT-DKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEAC 60
Query: 82 FVKATDFDGRPNISRYNDLFSGN 104
D + + D
Sbjct: 61 DESRFDKNLSQALKFVRDFAGDG 83
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol
demethylase (cyp51) {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 445
Score = 73.4 bits (178), Expect = 3e-17
Identities = 12/83 (14%), Positives = 23/83 (27%), Gaps = 4/83 (4%)
Query: 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKE 79
LP+ GHL P + + G + +L ++++G +
Sbjct: 2 LPRVSGGH--DEHGHLEEFRTD--PIGLMQRVRDELGDVGTFQLAGKQVVLLSGSHANEF 57
Query: 80 VLFVKATDFDGRPNISRYNDLFS 102
D D +F
Sbjct: 58 FFRAGDDDLDQAKAYPFMTPIFG 80
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 472
Score = 62.4 bits (150), Expect = 2e-13
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 3/81 (3%)
Query: 24 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 83
P P LP +G++ + K +G ++ G P + + + IK VL
Sbjct: 12 PGPTPLPFLGNILSYHKG--FCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVK 69
Query: 84 KATD-FDGRPNISRYNDLFSG 103
+ F R + S
Sbjct: 70 ECYSVFTNRRPFGPVGFMKSA 90
>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId:
274]}
Length = 385
Score = 50.2 bits (118), Expect = 5e-09
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 20 LPKAPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKE 79
+ + + A P + L + P + H +F L L P ++ E ++
Sbjct: 1 MKRLSLREAWPYLKDLQ-----QDPLAVLLAWGRAHPRLF-LPLPRFPLALIFDPEGVEG 54
Query: 80 VLFVKATDFDGRP 92
L + T
Sbjct: 55 ALLAEGTTKATFQ 67
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus
subtilis [TaxId: 1423]}
Length = 411
Score = 48.9 bits (115), Expect = 1e-08
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 5/78 (6%)
Query: 29 LPIIGH-LHLLGQYEVPYQAFKVISKTHGS-IFRLKLGVVPAIVVNGLENIKEVLFVKAT 86
+ + L LL + Y K ++ + S +F+ +L I + G E K
Sbjct: 3 DKSLDNSLTLLKE---GYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFYDTDRF 59
Query: 87 DFDGRPNISRYNDLFSGN 104
LF N
Sbjct: 60 QRQNALPKRVQKSLFGVN 77
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 401
Score = 44.4 bits (103), Expect = 4e-07
Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 44 PYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATDFDGRPNISRYNDLFSG 103
+ + + + G + + V A V+ +K++L D R + + ++
Sbjct: 11 HHTEHRTL-REGGPATWVDVLGVQAWSVSDPVLLKQLLTSSDVSKDARAHWPAFGEVVGT 69
Query: 104 NR 105
Sbjct: 70 WP 71
>d2owna1 d.38.1.8 (A:3-149) Putative oleoyl-ACP thioesterase LP0708
{Lactobacillus plantarum [TaxId: 1590]}
Length = 147
Score = 23.6 bits (50), Expect = 6.2
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 86 TDFDGRPNISRYNDLFSGNRENC 108
D GR ++ D+ E+
Sbjct: 20 CDRTGRATLTTLIDIAVLASEDQ 42
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.141 0.424
Gapped
Lambda K H
0.267 0.0393 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 412,264
Number of extensions: 17335
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 15
Length of query: 109
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 41
Effective length of database: 1,473,956
Effective search space: 60432196
Effective search space used: 60432196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.8 bits)