Query psy13063
Match_columns 316
No_of_seqs 140 out of 458
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 18:30:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13063.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13063hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hyg_A Putative uncharacterize 99.9 7.5E-27 2.6E-31 219.0 2.0 189 49-298 105-297 (301)
2 2kr6_A Presenilin-1; protease, 94.5 0.013 4.5E-07 51.4 1.9 66 199-289 87-155 (176)
3 4hyg_A Putative uncharacterize 73.2 0.13 4.6E-06 48.5 -4.8 30 166-196 210-239 (301)
4 1qp6_A Protein (alpha2D); de n 13.1 83 0.0028 20.0 1.4 13 294-306 7-19 (35)
5 2po8_A Mcoti-II; oxidative fol 11.9 52 0.0018 21.2 0.2 17 1-19 14-30 (34)
6 1pp9_G Ubiquinol-cytochrome C 7.6 2.4E+02 0.0081 21.3 2.4 36 266-301 35-70 (81)
7 1q90_G Cytochrome B6F complex 6.5 3.1E+02 0.011 18.0 2.2 15 279-293 13-27 (37)
8 3cx5_H Cytochrome B-C1 complex 6.3 3.8E+02 0.013 20.8 3.1 31 270-300 49-79 (93)
9 2j5u_A MREC protein; bacterial 6.2 1.7E+02 0.0059 26.2 1.2 20 203-222 180-199 (255)
10 3tgu_G UQCRQ, mitochondrial ub 6.1 2.9E+02 0.01 20.8 2.3 36 265-300 34-69 (81)
No 1
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A
Probab=99.92 E-value=7.5e-27 Score=219.04 Aligned_cols=189 Identities=19% Similarity=0.258 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHhccc--CchHHHHHHHHHHHHHhhhheeecccccccceeEEeec
Q psy13063 49 LFSFSLSLFIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRL--PSLKVSTLLLTGLLIYDVFWVFFSSYIFSTNVMVKVAT 126 (316)
Q Consensus 49 ~~~~~~s~~~~~~w~~~~~W~l~Nilgi~~~i~~i~~i~l--~s~k~~tiLL~gLf~YDIF~VF~sp~~f~tsVMvtVAt 126 (316)
.+++..|+++...++.+++|+..|+.|+++|.+....+.+ ..+ .+.+||++|.+||++||| +|++|+++|+
T Consensus 105 ~~a~~~a~~~~~ll~~ypeWyvid~~Gi~~~aG~aalFGISl~~~-paiiLL~~LavYDaISVy------~TkHMvtLAe 177 (301)
T 4hyg_A 105 AGTLIGAVAVTALLYLYPEWYVIDILGVLISAGVASIFGISLEPL-PVLVLLVLLAVYDAISVY------RTKHMITLAE 177 (301)
T ss_dssp HHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHH------HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcccHHHhhHHHHHHHhhHHHHHhhccchH-HHHHHHHHHHHHHhhhcc------CchHHHHHHH
Confidence 3555667778888888999999999999999998776655 666 899999999999999999 5789999999
Q ss_pred CCCCCCccchhhcccCCCcccCCCCCCCCceeeccCCCCCCcccccccCCCcccccceeeeeehhhh--hhhhhhhhcCC
Q psy13063 127 RPAENPVGLVAKRFHMGGVARDAPKLSLPGKLVFPSLHQTGHFSMLRGLGDIVMPGLLLCFVLRYDA--YKKSQLLHLGL 204 (316)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~Pikl~~P~~~~~~~~SmL~glGDiv~Pg~l~~~~lr~d~--~~~~~~~~lGl 204 (316)
+.. ++++|+++++|+. .+||+++. ..+. .++++..++|+
T Consensus 178 gvm---------------------dlk~PilfViP~~---~~ys~~~~---------------~~~~~~~~er~a~~iGl 218 (301)
T 4hyg_A 178 GVL---------------------ETKAPIMVVVPKR---ADYSFRKE---------------GLNISEGEERGAFVMGM 218 (301)
T ss_dssp TC-----------------------------------------------------------------------CHHHHHH
T ss_pred hhh---------------------ccCCceEEEEecC---CCcccccc---------------ccccccccccceeEecC
Confidence 743 3688999999973 46787621 1222 34788899999
Q ss_pred CCccccceeeeeeehhhhhhhhhcccCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHhCcCccchhhhhhhhh
Q psy13063 205 GDIVMPGLLLCFVLRYDAYKKSQLLHLGETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIFKAAQPALLYLVPFTL 284 (316)
Q Consensus 205 GDIviPGl~ia~~~rfD~~~~~~~~~~~~~~~~~~~~~~r~~YF~~sligY~~GL~~t~~a~~~~~~gQPALLYLVP~~L 284 (316)
||+++|+++++.+.+||...... + +-..+ +..+++||.+||.+.+.... .+++||.|.||+++++
T Consensus 219 GD~viP~ilVvSa~~F~~~~~~~-------g------~~~lP-algA~~Gt~~Gl~vLl~~V~-~grpqaGLP~LN~GaI 283 (301)
T 4hyg_A 219 GDLIMPSILVVSSHVFVDAPAVL-------W------TLSAP-TLGAMVGSLVGLAVLLYFVN-KGNPQAGLPPLNGGAI 283 (301)
T ss_dssp HHHHHHHHHHHHHHCC----------------------CCCS-CHHHHHHHHHHHHHHHHHHT-SSSCCCSHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHccccccc-------c------cccch-HHHHHHHHHHHHHHHHHHHH-cCCCCCCCCccchHHH
Confidence 99999999999999998642210 0 00123 78899999999998876322 7999999999999999
Q ss_pred HHHHHHHHHHhHHH
Q psy13063 285 LPLLTMAYLKGDLR 298 (316)
Q Consensus 285 ~~~~~~A~~RgEl~ 298 (316)
++.++.++.+||+.
T Consensus 284 ~Gfllg~l~~G~~~ 297 (301)
T 4hyg_A 284 LGFLVGAALAGSFS 297 (301)
T ss_dssp HHHHHTTSCC----
T ss_pred HHHHHHHHHhceec
Confidence 99999999999986
No 2
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=94.48 E-value=0.013 Score=51.45 Aligned_cols=66 Identities=26% Similarity=0.334 Sum_probs=50.1
Q ss_pred hhhcCCCCccccceeeeeee--hh-hhhhhhhcccCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHhCcCccc
Q psy13063 199 LLHLGLGDIVMPGLLLCFVL--RY-DAYKKSQLLHLGETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIFKAAQPA 275 (316)
Q Consensus 199 ~~~lGlGDIviPGl~ia~~~--rf-D~~~~~~~~~~~~~~~~~~~~~~r~~YF~~sligY~~GL~~t~~a~~~~~~gQPA 275 (316)
-.-|||||-|+=+++++-+. ++ |- .=..+|++|..+||.+|++.+.+++++-||
T Consensus 87 gikLGLGDFIFYSvLVgkAa~~~~~d~-----------------------~t~~ac~vaIL~GL~~TL~lLa~~~~aLPA 143 (176)
T 2kr6_A 87 GVKLGLGDFIFYSVLVGKASATASGDW-----------------------NTTIACFVAILIGLCLTLLLLAIFKKALPA 143 (176)
T ss_dssp CCSSCTTTHHHHHHHHHHHHHHSCCTT-----------------------TTHHHHHHHHHHHHHHHHHHHHHHTCSCSS
T ss_pred cccccccCeeehHHHHHHHHHhhccCH-----------------------HHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Confidence 34579999998887777554 21 21 125788999999999999999999999999
Q ss_pred hhhhhhhhhHHHHH
Q psy13063 276 LLYLVPFTLLPLLT 289 (316)
Q Consensus 276 LLYLVP~~L~~~~~ 289 (316)
|- +|..++.+..
T Consensus 144 LP--iSI~lG~~fy 155 (176)
T 2kr6_A 144 LP--ISITFGLVFY 155 (176)
T ss_dssp SS--SCCCCHHHHH
T ss_pred Cc--HHHHHHHHHH
Confidence 97 4556655443
No 3
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A
Probab=73.25 E-value=0.13 Score=48.47 Aligned_cols=30 Identities=20% Similarity=0.393 Sum_probs=21.8
Q ss_pred CCcccccccCCCcccccceeeeeehhhhhhh
Q psy13063 166 TGHFSMLRGLGDIVMPGLLLCFVLRYDAYKK 196 (316)
Q Consensus 166 ~~~~SmL~glGDiv~Pg~l~~~~lr~d~~~~ 196 (316)
+++.+++ |+||+|||++++..+.+||.++.
T Consensus 210 er~a~~i-GlGD~viP~ilVvSa~~F~~~~~ 239 (301)
T 4hyg_A 210 ERGAFVM-GMGDLIMPSILVVSSHVFVDAPA 239 (301)
T ss_dssp --CHHHH-HHHHHHHHHHHHHHHHCC-----
T ss_pred ccceeEe-cCcchhHHHHHHHHHHHHccccc
Confidence 3567899 99999999999999999986543
No 4
>1qp6_A Protein (alpha2D); de novo design, protein design, protein folding, bisecting U motif, four-helix bundle, helix-turn-helix, de novo protein; NMR {Synthetic} SCOP: k.16.1.1
Probab=13.11 E-value=83 Score=19.96 Aligned_cols=13 Identities=15% Similarity=0.616 Sum_probs=10.4
Q ss_pred HhHHHHhccCccc
Q psy13063 294 KGDLRRMWSEPFI 306 (316)
Q Consensus 294 RgEl~~~W~g~~~ 306 (316)
.+.++++|+|+.+
T Consensus 7 ekkfkelwkgprr 19 (35)
T 1qp6_A 7 EKKFKELWKGPRR 19 (35)
T ss_dssp HHHHHHHHSSSCS
T ss_pred HHHHHHHhcCCcc
Confidence 4678999999864
No 5
>2po8_A Mcoti-II; oxidative folding intermediate, plant protein; NMR {Momordica cochinchinensis} SCOP: g.3.2.1
Probab=11.89 E-value=52 Score=21.19 Aligned_cols=17 Identities=41% Similarity=0.942 Sum_probs=12.5
Q ss_pred CceeeeEeeecccccCCCC
Q psy13063 1 CFIECFIVCFSHSYRGSGV 19 (316)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (316)
|.-|| +|..|.|=|+|-
T Consensus 14 Cl~~C--iC~~~G~CG~~s 30 (34)
T 2po8_A 14 CPGAC--ICRGNGYCGSGS 30 (34)
T ss_dssp SCTTE--EECTTSBEEEGG
T ss_pred cccCC--eEccCcccccCC
Confidence 44555 689999998873
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=7.58 E-value=2.4e+02 Score=21.32 Aligned_cols=36 Identities=8% Similarity=0.213 Sum_probs=29.0
Q ss_pred HHHhCcCccchhhhhhhhhHHHHHHHHHHhHHHHhc
Q psy13063 266 SEIFKAAQPALLYLVPFTLLPLLTMAYLKGDLRRMW 301 (316)
Q Consensus 266 ~~~~~~gQPALLYLVP~~L~~~~~~A~~RgEl~~~W 301 (316)
-.++++-+=..+|++|..+++-.+..|.+.|-..+=
T Consensus 35 ~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~ 70 (81)
T 1pp9_G 35 PNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHh
Confidence 345666677788999999999999999998877653
No 7
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=6.51 E-value=3.1e+02 Score=17.95 Aligned_cols=15 Identities=53% Similarity=0.826 Sum_probs=11.9
Q ss_pred hhhhhhHHHHHHHHH
Q psy13063 279 LVPFTLLPLLTMAYL 293 (316)
Q Consensus 279 LVP~~L~~~~~~A~~ 293 (316)
++|.++...+.+|+.
T Consensus 13 lipvtlaGLfv~Ay~ 27 (37)
T 1q90_G 13 LVPVTIAGLFVTAYL 27 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 468888888888875
No 8
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=6.29 E-value=3.8e+02 Score=20.77 Aligned_cols=31 Identities=6% Similarity=-0.092 Sum_probs=23.6
Q ss_pred CcCccchhhhhhhhhHHHHHHHHHHhHHHHh
Q psy13063 270 KAAQPALLYLVPFTLLPLLTMAYLKGDLRRM 300 (316)
Q Consensus 270 ~~gQPALLYLVP~~L~~~~~~A~~RgEl~~~ 300 (316)
++-+=..+|++|-.+++-++..|.+.|-..+
T Consensus 49 RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~l 79 (93)
T 3cx5_H 49 RRFKSQFLYVLIPAGIYWYWWKNGNEYNEFL 79 (93)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcceEEechHhHHHHHHHHHHHHHHHH
Confidence 4444556689999999999999988777654
No 9
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=6.16 E-value=1.7e+02 Score=26.20 Aligned_cols=20 Identities=20% Similarity=0.474 Sum_probs=17.2
Q ss_pred CCCCccccceeeeeeehhhh
Q psy13063 203 GLGDIVMPGLLLCFVLRYDA 222 (316)
Q Consensus 203 GlGDIviPGl~ia~~~rfD~ 222 (316)
|+|.+.-||+.|+...+.+.
T Consensus 180 Gl~gifP~GipVG~V~~V~~ 199 (255)
T 2j5u_A 180 GLGGKFPAGIFIGTIEKVET 199 (255)
T ss_dssp CTTSSSCTTCEEEEEEEEEE
T ss_pred CCCCcCCCCCEEEEEEEEee
Confidence 89999999999999987653
No 10
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=6.06 E-value=2.9e+02 Score=20.83 Aligned_cols=36 Identities=11% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHhCcCccchhhhhhhhhHHHHHHHHHHhHHHHh
Q psy13063 265 SSEIFKAAQPALLYLVPFTLLPLLTMAYLKGDLRRM 300 (316)
Q Consensus 265 a~~~~~~gQPALLYLVP~~L~~~~~~A~~RgEl~~~ 300 (316)
+-..+++-+=..||.+|..++.-.+..|.+.|-..+
T Consensus 34 i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l 69 (81)
T 3tgu_G 34 LPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERL 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHH
Done!