Query psy13063
Match_columns 316
No_of_seqs 140 out of 458
Neff 5.2
Searched_HMMs 13730
Date Fri Aug 16 18:31:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13063.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13063hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90g_ f.23.26.1 (G:) PetG su 11.1 77 0.0056 18.3 2.2 16 279-294 13-28 (30)
2 d1nixa_ g.3.6.2 (A:) Hainantox 9.9 48 0.0035 19.4 1.0 14 173-186 3-16 (33)
3 d1lu0a_ g.3.2.1 (A:) Trypsin i 6.3 63 0.0046 18.7 0.3 14 1-16 16-29 (29)
4 d2axtt1 f.23.34.1 (T:1-30) Pho 6.0 1.1E+02 0.0084 17.3 1.4 13 96-108 11-23 (30)
5 d1ppjg_ f.23.13.1 (G:) Ubiquin 5.9 2E+02 0.015 19.7 3.1 33 268-300 37-69 (75)
6 d2axtj1 f.23.32.1 (J:7-40) Pho 5.8 1.7E+02 0.012 17.2 2.2 15 93-107 13-27 (34)
7 d2axte1 f.23.38.1 (E:3-84) Cyt 4.7 1.5E+02 0.011 20.8 1.7 33 78-113 15-48 (82)
8 d2aj6a1 d.108.1.1 (A:1-118) Hy 4.1 1.3E+02 0.0098 20.4 1.0 13 8-20 84-96 (118)
9 d1oedc_ f.36.1.1 (C:) Acetylch 3.7 3.1E+02 0.023 21.2 3.2 27 246-272 66-92 (260)
10 d2ba0a2 b.84.4.2 (A:2-52) Exos 3.6 1.6E+02 0.012 18.5 1.0 10 177-186 2-11 (51)
No 1
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=11.11 E-value=77 Score=18.28 Aligned_cols=16 Identities=50% Similarity=0.806 Sum_probs=11.9
Q ss_pred hhhhhhHHHHHHHHHH
Q psy13063 279 LVPFTLLPLLTMAYLK 294 (316)
Q Consensus 279 LVP~~L~~~~~~A~~R 294 (316)
++|.++...+.+|+.+
T Consensus 13 lipiTl~Glfv~AylQ 28 (30)
T d1q90g_ 13 LVPVTIAGLFVTAYLQ 28 (30)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4688888888888753
No 2
>d1nixa_ g.3.6.2 (A:) Hainantoxin-I {Spider (Selenocosmia hainana) [TaxId: 209901]}
Probab=9.86 E-value=48 Score=19.43 Aligned_cols=14 Identities=36% Similarity=0.857 Sum_probs=9.1
Q ss_pred ccCCCcccccceee
Q psy13063 173 RGLGDIVMPGLLLC 186 (316)
Q Consensus 173 ~glGDiv~Pg~l~~ 186 (316)
+|+||.-+||--.|
T Consensus 3 kgfg~sc~pgknec 16 (33)
T d1nixa_ 3 KGFGKSCVPGKNEC 16 (33)
T ss_dssp BCSSCBCCTTTTCB
T ss_pred cccccccCCCCccc
Confidence 47777777775433
No 3
>d1lu0a_ g.3.2.1 (A:) Trypsin inhibitor {Squash (Cucurbita maxima) [TaxId: 3661]}
Probab=6.26 E-value=63 Score=18.66 Aligned_cols=14 Identities=57% Similarity=1.509 Sum_probs=8.7
Q ss_pred CceeeeEeeecccccC
Q psy13063 1 CFIECFIVCFSHSYRG 16 (316)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (316)
|+.|| ||..|.|=|
T Consensus 16 Cla~C--vC~~~G~CG 29 (29)
T d1lu0a_ 16 CLAEC--VCLEHGYCG 29 (29)
T ss_dssp SCTTC--CBCTTSBBC
T ss_pred chhhc--eecccccCC
Confidence 45555 577777644
No 4
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.00 E-value=1.1e+02 Score=17.29 Aligned_cols=13 Identities=15% Similarity=0.654 Sum_probs=9.4
Q ss_pred HHHHHHHHHhhhh
Q psy13063 96 LLLTGLLIYDVFW 108 (316)
Q Consensus 96 iLL~gLf~YDIF~ 108 (316)
..+++||++-|||
T Consensus 11 ac~i~lfffaiff 23 (30)
T d2axtt1 11 ACIIALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 3467888888875
No 5
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.94 E-value=2e+02 Score=19.71 Aligned_cols=33 Identities=9% Similarity=0.254 Sum_probs=24.9
Q ss_pred HhCcCccchhhhhhhhhHHHHHHHHHHhHHHHh
Q psy13063 268 IFKAAQPALLYLVPFTLLPLLTMAYLKGDLRRM 300 (316)
Q Consensus 268 ~~~~gQPALLYLVP~~L~~~~~~A~~RgEl~~~ 300 (316)
.+++-.--.+|++|-.+++-++..|...|-..+
T Consensus 37 ~~RR~~~~~l~v~PPfi~~Y~iy~W~~~~~~~~ 69 (75)
T d1ppjg_ 37 VLRRTRACILRVAPPFVAFYLVYTWGTQEFEKS 69 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHhceEEcCHHHHHHHHHHHHHHHHHHH
Confidence 344444567899999999999999988776654
No 6
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.77 E-value=1.7e+02 Score=17.24 Aligned_cols=15 Identities=20% Similarity=0.802 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhhh
Q psy13063 93 VSTLLLTGLLIYDVF 107 (316)
Q Consensus 93 ~~tiLL~gLf~YDIF 107 (316)
++.|-++++|+|-.+
T Consensus 13 ~~vi~~vG~FfYGsY 27 (34)
T d2axtj1 13 MGVIVIVGLFFYGAY 27 (34)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred hhhHhheeeeeeeee
Confidence 356778899999765
No 7
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.71 E-value=1.5e+02 Score=20.80 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=18.2
Q ss_pred HHHHHHHhcccCchHHHHHHH-HHHHHHhhhheeecc
Q psy13063 78 LCVAFIAFVRLPSLKVSTLLL-TGLLIYDVFWVFFSS 113 (316)
Q Consensus 78 ~~i~~i~~i~l~s~k~~tiLL-~gLf~YDIF~VF~sp 113 (316)
+-+.+|..+.+|++-++--|. .-=+.||+| +||
T Consensus 15 iRYWvIHsiTIPslFiaGwlFVstGLAYdvF---GtP 48 (82)
T d2axte1 15 VRYWVIHSITIPALFIAGWLFVSTGLAYDVF---GTP 48 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHT---TCC
T ss_pred eeEEEEEeecccHHHHhhhhheecccchhhc---CCC
Confidence 344555666666654443333 334679975 665
No 8
>d2aj6a1 d.108.1.1 (A:1-118) Hypothetical protein MW0638 {Staphylococcus aureus [TaxId: 1280]}
Probab=4.07 E-value=1.3e+02 Score=20.44 Aligned_cols=13 Identities=15% Similarity=0.465 Sum_probs=9.1
Q ss_pred eeecccccCCCCC
Q psy13063 8 VCFSHSYRGSGVS 20 (316)
Q Consensus 8 ~~~~~~~~~~~~~ 20 (316)
++....|||.|+.
T Consensus 84 l~V~~~~RgkGiG 96 (118)
T d2aj6a1 84 LYVEPQFRKLGIA 96 (118)
T ss_dssp EEECGGGTTSSHH
T ss_pred EEEchhhccCHHH
Confidence 3447888888864
No 9
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.68 E-value=3.1e+02 Score=21.21 Aligned_cols=27 Identities=4% Similarity=-0.064 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCcC
Q psy13063 246 SYFHCSLIGYFLGLLTATVSSEIFKAA 272 (316)
Q Consensus 246 ~YF~~sligY~~GL~~t~~a~~~~~~g 272 (316)
.||.++++=-.+.++.|.+++.+.+++
T Consensus 66 ~y~~~~~~~v~~s~~~t~~Vl~~~~~~ 92 (260)
T d1oedc_ 66 KYLMFIMSLVTGVIVNCGIVLNFHFRT 92 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhheeeeecc
Confidence 689998988899999999998887655
No 10
>d2ba0a2 b.84.4.2 (A:2-52) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=3.59 E-value=1.6e+02 Score=18.51 Aligned_cols=10 Identities=60% Similarity=0.966 Sum_probs=5.9
Q ss_pred Ccccccceee
Q psy13063 177 DIVMPGLLLC 186 (316)
Q Consensus 177 Div~Pg~l~~ 186 (316)
+||+||-.++
T Consensus 2 ~iV~PGe~i~ 11 (51)
T d2ba0a2 2 KIVLPGDLLS 11 (51)
T ss_dssp CEECTTCEEE
T ss_pred CEEcCCcEee
Confidence 4566666553
Done!