RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13063
(316 letters)
>gnl|CDD|217991 pfam04258, Peptidase_A22B, Signal peptide peptidase. The members
of this family are membrane proteins. In some proteins
this region is found associated with pfam02225. This
family corresponds with Merops subfamily A22B, the type
example of which is signal peptide peptidase. There is a
sequence-similarity relationship with pfam01080.
Length = 291
Score = 225 bits (576), Expect = 1e-72
Identities = 107/268 (39%), Positives = 136/268 (50%), Gaps = 71/268 (26%)
Query: 41 CGRFTSAELFSFSLSLFIVCIW-VLTG-HWLLMDAMGMGLCVAFIAFVRLPSLKVSTLLL 98
GRFT +EL + L + W VL HW+L D +G+ LC+ I +RLP+LKV T+LL
Sbjct: 89 NGRFTYSELVALLLCIVFAVWWYVLRKEHWILQDILGIALCINVIKILRLPNLKVGTILL 148
Query: 99 TGLLIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMGGVARDAPKLSLPGKL 158
+GL YD+FWVF S YIF T+VMV VAT P + LP KL
Sbjct: 149 SGLFFYDIFWVFISPYIFGTSVMVTVATGPFDAAEK-------------------LPMKL 189
Query: 159 VFPSLHQT----GHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMPGLLL 214
VFP L+ G FSML GLGDIVMPGLL+ F LR+D K
Sbjct: 190 VFPRLNDYPGNWGPFSML-GLGDIVMPGLLIAFCLRFDISKN------------------ 230
Query: 215 CFVLRYDAYKKSQLLHLGETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIFKAAQP 274
S +YF ++I Y LGLL V+ +FKAAQP
Sbjct: 231 ---------------------------KSSRTYFISTMIAYGLGLLITFVALNLFKAAQP 263
Query: 275 ALLYLVPFTLLPLLTMAYLKGDLRRMWS 302
ALLYLVP TL LL +A +G+L+++W+
Sbjct: 264 ALLYLVPCTLGTLLLVALWRGELKKLWN 291
>gnl|CDD|214793 smart00730, PSN, Presenilin, signal peptide peptidase, family.
Presenilin 1 and presenilin 2 are polytopic membrane
proteins, whose genes are mutated in some individuals
with Alzheimer's disease. Distant homologues, present in
eukaryotes and archaea, also contain conserved aspartic
acid residues which are predicted to contribute to
catalysis. At least one member of this family has been
shown to possess signal peptide peptidase activity.
Length = 249
Score = 145 bits (369), Expect = 4e-42
Identities = 75/265 (28%), Positives = 105/265 (39%), Gaps = 64/265 (24%)
Query: 32 LFRRISFGVCGRFTSAELFSFSLSLFIVCIWVLTG--HWLLMDAMGMGLCVAFIAFVRLP 89
L+ + R L L+ +V W + W+ D +G+ LC+A + +RLP
Sbjct: 47 LYSLLYPLEVFRVDYPTLLILLLNFAVVGFWCIHRKGAWIQQDLIGISLCMAILFILRLP 106
Query: 90 SLKVSTLLLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMGGVARDA 149
S + +LL L IYD+F VF + VMV+VAT RD
Sbjct: 107 SEWTAWILLGALFIYDIFAVFGTPG--PLRVMVEVATG-------------------RDE 145
Query: 150 PKLSLPGKLVFPSLHQTGHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVM 209
P P L P L ++ D +L GLGDIV
Sbjct: 146 PIKVFPALLYVPRL-------VVSFEDDEEERFSML-----------------GLGDIVF 181
Query: 210 PGLLLCFVLRYDAYKKSQLLHLGETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIF 269
PG+L+ R+D +S +YF + Y +GL+ V +F
Sbjct: 182 PGILVASAARFDVSVRSDS-----------------NYFLACFVAYGIGLILTLVLLALF 224
Query: 270 KAAQPALLYLVPFTLLPLLTMAYLK 294
K AQPAL YLVPFTL+ L A L+
Sbjct: 225 KKAQPALPYLVPFTLVFYLLTALLR 249
>gnl|CDD|218184 pfam04632, FUSC, Fusaric acid resistance protein family. This
family includes a conserved region found in two proteins
associated with fusaric acid resistance,from
Burkholderia cepacia and Klebsiella oxytoca. These
proteins are likely to be membrane transporter proteins.
Length = 649
Score = 29.5 bits (67), Expect = 2.9
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 38 FGVCGRFTSAELFSFSLSLFIVCIWVLTGHWLLMDAMGMGLCVAFIAFV 86
F V L + L+ ++ +L G+GL V F +
Sbjct: 408 FVVLPHVDGFPLLALVLAPPLLLGGLLLARPRTA-GYGLGLAVFFALLL 455
>gnl|CDD|235958 PRK07194, fliG, flagellar motor switch protein G; Reviewed.
Length = 334
Score = 28.0 bits (63), Expect = 7.1
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 239 PRHLSR-ISYFHCSLIGYFLGLLTATVSSEIFKA 271
P+ L+R I+ H + FL L ++ + K
Sbjct: 117 PQQLARLIANEHLQMQAVFLAFLPPESAAAVLKY 150
>gnl|CDD|152524 pfam12089, DUF3566, Transmembrane domain of unknown function
(DUF3566). This family of proteins is functionally
uncharacterized. This protein is found in bacteria.
Proteins in this family are typically between 136 to
304 amino acids in length. This region represents a
transmembrane region found at the C-terminus of the
proteins.
Length = 120
Score = 26.8 bits (60), Expect = 7.6
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 6/29 (20%)
Query: 50 FSFSLSLFI---VCIWVLTGHWLLMDAMG 75
F S++L I V + VL W+++DAMG
Sbjct: 22 FLLSVALGIVWVVAVAVL---WVVLDAMG 47
>gnl|CDD|212061 cd11492, SLC5sbd_NIS-SMVT, Na(+)/iodide (NIS) and
Na(+)/multivitamin (SMVT) cotransporters, and related
proteins; solute binding domain. NIS (encoded by the
SLC5A5 gene) transports I-, and other anions including
ClO4-, SCN-, and Br-. SMVT (encoded by the SLC5A6 gene)
transports biotin, pantothenic acid and lipoate. This
subfamily also includes SMCT1 and -2. SMCT1(encoded by
the SLC5A8 gene) is a high-affinity transporter of
various monocarboxylates including lactate and pyruvate,
short-chain fatty acids, ketone bodies, nicotinate and
its structural analogs, pyroglutamate, benzoate and its
derivatives, and iodide. SMCT2 (encoded by the SLC5A12
gene) is a low-affinity transporter for short-chain
fatty acids, lactate, pyruvate, and nicotinate. This
subgroup belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 522
Score = 27.8 bits (63), Expect = 8.4
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 237 PAPRHLSRISYFHCSLIGYFLGLLTATVSS 266
L RISY + SLIG + ++ + S
Sbjct: 491 SELFSLYRISYLYYSLIGTLITVVVGLIVS 520
>gnl|CDD|205044 pfam12725, DUF3810, Protein of unknown function (DUF3810). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 333 and 377 amino
acids in length. There is a conserved HEXXH sequence
motif that is characteristic of metallopeptidases. This
family may therefore belong to an as yet uncharacterized
family of peptidase enzymes.
Length = 317
Score = 27.5 bits (62), Expect = 8.5
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 11/84 (13%)
Query: 27 VYNTTLFRRISFGVCGRFTSAELFSFSLSLFIVCIWVLTGHWLLMDAMGMGLCVAFIAFV 86
Y+ ++ IS + R F FSL + + ++ LL L
Sbjct: 1 WYSRGIYPVISKLL-RRLFG--WFPFSLGDLLYYLLII---LLL-----RYLIKLRKRLK 49
Query: 87 RLPSLKVSTLLLTGLLIYDVFWVF 110
+ + +L ++Y +F++
Sbjct: 50 KKWKRFLLRVLAYLSVLYFLFYLL 73
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.331 0.145 0.460
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,426,576
Number of extensions: 1611381
Number of successful extensions: 2060
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2037
Number of HSP's successfully gapped: 77
Length of query: 316
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 219
Effective length of database: 6,635,264
Effective search space: 1453122816
Effective search space used: 1453122816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 59 (26.4 bits)