RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13063
         (316 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 56/341 (16%), Positives = 91/341 (26%), Gaps = 134/341 (39%)

Query: 78  LCVAFIAFV--RLPSLKVSTL--LLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPAENPV 133
           L   F+ +V   +   KV     +L   L       F + Y+   ++    A    EN  
Sbjct: 60  LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE-----FENCYLEGNDIHALAAKLLQENDT 114

Query: 134 GLVAKR------FHMGGVARDAPKLSLPGKLVFPSLHQTGH---FSMLRGLGDIVMPGLL 184
            LV  +           +A+          L F ++   G+    ++  G G+       
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSAL-FRAV-GEGNAQLVAIFGGQGNT-----D 167

Query: 185 LCFV-LR--YDAYK----------KSQLLHL-------------GLGDIV---------- 208
             F  LR  Y  Y              L  L             GL +I+          
Sbjct: 168 DYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL-NILEWLENPSNTP 226

Query: 209 -----------MPGLLLCFVLRYDAYKKSQLLH-------LGETGIPAPRHLSRISYFHC 250
                       P + +            QL H       LG T    P  L        
Sbjct: 227 DKDYLLSIPISCPLIGVI-----------QLAHYVVTAKLLGFT----PGELRSYL---K 268

Query: 251 SLIGYFLGLLTATVSS------EIFKAAQPALLYL----------VPFTLLPLLT----- 289
              G+  GL+TA   +        F + + A+  L           P T LP        
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328

Query: 290 ---------MAYLKGDLRRMWSEPFI-----IVPPSKHMDI 316
                    M  +   L +   + ++      +P  K ++I
Sbjct: 329 ENNEGVPSPMLSISN-LTQEQVQDYVNKTNSHLPAGKQVEI 368



 Score = 36.6 bits (84), Expect = 0.012
 Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 31/136 (22%)

Query: 140 FHMGGVARDA-PKLSLPGKLVFPSL-HQTGHFS-ML--RGLGDIVMPGLLLCFVLRYDAY 194
           F +G    +A P  SLP  ++  SL +  G  S ML    L        +  +V + +++
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ----EQVQDYVNKTNSH 359

Query: 195 -KKSQLLHLGL--GD--IVMPG----LL-LCFVLRYDAYKKSQLLHLGETGIP----APR 240
               + + + L  G   +V+ G    L  L   LR    K      L ++ IP      +
Sbjct: 360 LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR----KAKAPSGLDQSRIPFSERKLK 415

Query: 241 HLSR---ISY-FHCSL 252
             +R   ++  FH  L
Sbjct: 416 FSNRFLPVASPFHSHL 431



 Score = 34.6 bits (79), Expect = 0.048
 Identities = 41/242 (16%), Positives = 60/242 (24%), Gaps = 119/242 (49%)

Query: 74   MGMGLCVAFIAFVRLPSLKVSTLLLTGLLIYDVF----WVFFSSYIFSTNVMVKVATRPA 129
            MGM L     A  +                 DV+      F  +Y FS   +V       
Sbjct: 1631 MGMDLYKTSKA-AQ-----------------DVWNRADNHFKDTYGFSILDIVI------ 1666

Query: 130  ENPVGLVAKRFHMGGVARDAPKLSLPGKLVFPSLHQTGHFSMLRGLGDIVMPGLLLCFVL 189
             NPV L     H GG                    + G    +R                
Sbjct: 1667 NNPVNLT---IHFGG--------------------EKGK--RIRE--------------- 1686

Query: 190  RYDAYKKSQLLHLGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGETGIPAPRHLSRISYFH 249
             Y A                    + F    D   K++ +   E       H +  ++  
Sbjct: 1687 NYSA--------------------MIFETIVDGKLKTEKI-FKE----INEHSTSYTFRS 1721

Query: 250  CSLIGYFLGLLTATVSSEIFKAAQPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFIIVP 309
                    GLL+AT         QPAL          L+  A        + S+  +I  
Sbjct: 1722 EK------GLLSATQF------TQPALT---------LMEKAA----FEDLKSK-GLIPA 1755

Query: 310  PS 311
             +
Sbjct: 1756 DA 1757



 Score = 28.9 bits (64), Expect = 3.0
 Identities = 17/98 (17%), Positives = 25/98 (25%), Gaps = 39/98 (39%)

Query: 229 LHLG--ETGIPAPRHLSRISYFHCS----------------------------LIGYFLG 258
           L  G  E  +  P       +F  S                            L+G FLG
Sbjct: 11  LSHGSLEHVLLVPTAS----FFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66

Query: 259 LLTATVSSEIFKAAQPALLYLVPFTLLPLLTMAYLKGD 296
            +++ V           L        L      YL+G+
Sbjct: 67  YVSSLVEPSKVGQFDQVLN-----LCLTEFENCYLEGN 99


>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
           cerevisiae}
          Length = 231

 Score = 34.7 bits (79), Expect = 0.021
 Identities = 19/110 (17%), Positives = 28/110 (25%), Gaps = 45/110 (40%)

Query: 210 PGLLLCFVLRYDAYKKSQLLHLGETGIPAPRHLSRI-SYFHCSLIGYFLGLLTATVSSEI 268
            G+     + Y +  K   +   +     P    RI S                    E+
Sbjct: 116 VGMA--IQVNYSSEVKENSVDSDDKAKVPPLI--RIVSGL------------------EL 153

Query: 269 FKAAQPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPF--I-IVPPSKHMD 315
               Q    +LV         +AY          EPF  I I  P   + 
Sbjct: 154 SDTKQKGKKFLV---------IAY----------EPFENIAIELPPNEIL 184


>1ghs_A 1,3-beta-glucanase; hydrolase; 2.30A {Hordeum vulgare} SCOP:
           c.1.8.3
          Length = 306

 Score = 28.6 bits (63), Expect = 2.5
 Identities = 9/52 (17%), Positives = 19/52 (36%)

Query: 3   IECFIVCFSHSYRGSGVSSPTNVSVYNTTLFRRISFGVCGRFTSAELFSFSL 54
           ++  +        G   +S  N   YN  L   +  G   +  + E + F++
Sbjct: 225 VKVVVSESGWPSAGGFAASAGNARTYNQGLINHVGGGTPKKREALETYIFAM 276


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.331    0.145    0.460 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,837,010
Number of extensions: 280743
Number of successful extensions: 502
Number of sequences better than 10.0: 1
Number of HSP's gapped: 500
Number of HSP's successfully gapped: 12
Length of query: 316
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 222
Effective length of database: 4,077,219
Effective search space: 905142618
Effective search space used: 905142618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (26.2 bits)