RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13063
         (316 letters)



>d1ghsa_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum
           vulgare), 1,3-beta-glucanase [TaxId: 4513]}
          Length = 306

 Score = 28.4 bits (63), Expect = 0.98
 Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 5   CFIVC-FSHSYRGSGVSSPTNVSVYNTTLFRRISFGVCGRFTSAELFSFSL 54
             +V        G   +S  N   YN  L   +  G   +  + E + F++
Sbjct: 226 KVVVSESGWPSAGGFAASAGNARTYNQGLINHVGGGTPKKREALETYIFAM 276


>d1aq0a_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum
           vulgare), 1,3-1,4-beta-glucanase [TaxId: 4513]}
          Length = 306

 Score = 26.5 bits (58), Expect = 4.1
 Identities = 9/44 (20%), Positives = 16/44 (36%)

Query: 11  SHSYRGSGVSSPTNVSVYNTTLFRRISFGVCGRFTSAELFSFSL 54
                G   ++P N   YN  L   +  G      + E + F++
Sbjct: 234 GWPSGGGTAATPANARFYNQHLINHVGRGTPRHPGAIETYIFAM 277


>d1ha4a_ b.11.1.1 (A:) gamma-Crystallin {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 87

 Score = 24.3 bits (53), Expect = 8.3
 Identities = 10/46 (21%), Positives = 14/46 (30%), Gaps = 3/46 (6%)

Query: 28 YNTTLFRRISF-GVCGRFTSA--ELFSFSLSLFIVCIWVLTGHWLL 70
          Y   +F +  F G     T     +        I    VL G W+ 
Sbjct: 3  YKIQIFEKGDFSGQMYETTEDCPSIMEQFHMREIHSCKVLEGVWIF 48


>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein
           L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
          Length = 37

 Score = 22.8 bits (49), Expect = 9.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 95  TLLLTGLLIYDVFWVFFSSYIFS 117
           T L  GLL+  V  + FSSY F+
Sbjct: 15  TSLYLGLLLILVLALLFSSYFFN 37


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.145    0.460 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,180,719
Number of extensions: 52159
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 7
Length of query: 316
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 231
Effective length of database: 1,240,546
Effective search space: 286566126
Effective search space used: 286566126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.3 bits)