BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13064
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QKM|B Chain B, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|D Chain D, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|F Chain F, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|H Chain H, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
Length = 266
Score = 117 bits (293), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 92/170 (54%), Gaps = 36/170 (21%)
Query: 15 ILDDLSSRFVINIPHEERGDVIRICFQMELAYWFYLDFYCTQDESLFKAGLKEFFFQMFH 74
+LDDLS+RF++N+P EE+ V R+CFQ+E A+WFY DF Q++ L GL+ F ++F
Sbjct: 11 VLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLFA 70
Query: 75 HIPSLTHFARKIDTVLDDWRHYKQSVPTFGAILIDKSLTQVLLFLRQGLTVLDDWRHYKQ 134
H P L +++ + DD+ YK +P GAI++D
Sbjct: 71 HCPLLWKWSKVHEEAFDDFLRYKTRIPVRGAIMLD------------------------- 105
Query: 135 SVPTFGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREV 184
S+ Q +LV+ + A + WGFPKGK+++DE + CAIREV
Sbjct: 106 -----------MSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREV 144
>pdb|2A6T|A Chain A, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
pdb|2A6T|B Chain B, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
Length = 271
Score = 117 bits (293), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 92/170 (54%), Gaps = 36/170 (21%)
Query: 15 ILDDLSSRFVINIPHEERGDVIRICFQMELAYWFYLDFYCTQDESLFKAGLKEFFFQMFH 74
+LDDLS+RF++N+P EE+ V R+CFQ+E A+WFY DF Q++ L GL+ F ++F
Sbjct: 16 VLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLFA 75
Query: 75 HIPSLTHFARKIDTVLDDWRHYKQSVPTFGAILIDKSLTQVLLFLRQGLTVLDDWRHYKQ 134
H P L +++ + DD+ YK +P GAI++D
Sbjct: 76 HCPLLWKWSKVHEEAFDDFLRYKTRIPVRGAIMLD------------------------- 110
Query: 135 SVPTFGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREV 184
S+ Q +LV+ + A + WGFPKGK+++DE + CAIREV
Sbjct: 111 -----------MSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREV 149
>pdb|2QKL|B Chain B, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
Length = 95
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%)
Query: 15 ILDDLSSRFVINIPHEERGDVIRICFQMELAYWFYLDFYCTQDESLFKAGLKEFFFQMFH 74
+LDDLS+RF++N+P EE+ V R+CFQ+E A+WFY DF Q++ L GL+ F ++F
Sbjct: 11 VLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLFA 70
Query: 75 HIPSLTHFARKIDTVLDDWRHYK 97
H P L +++ + DD+ YK
Sbjct: 71 HCPLLWKWSKVHEEAFDDFLRYK 93
>pdb|2JVB|A Chain A, Solution Structure Of Catalytic Domain Of Ydcp2
Length = 146
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 133 KQSVPTFGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVK 185
K+S+P GA + +++L+++LLVQ + SW FP+GK+++DE + C IREVK
Sbjct: 1 KKSIPVRGAAIFNENLSKILLVQGTES-DSWSFPRGKISKDENDIDCCIREVK 52
>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|B Chain B, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|C Chain C, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|D Chain D, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7V|A Chain A, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
pdb|3I7V|B Chain B, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
Length = 134
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 150 QVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREV 184
+VLL+++ W FPKG + E P A+REV
Sbjct: 16 EVLLIKT--PSNVWSFPKGNIEPGEKPEETAVREV 48
>pdb|2FVV|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1
pdb|2Q9P|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1,
Mg-F Complex
Length = 194
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 114 QVLLFLRQGLTVLDDWRHYKQSVPTFGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQD 173
Q ++ L+ T D YK+ +S +VLLV S W P G + +
Sbjct: 21 QSMMKLKSNQTRTYDGDGYKKRAACL--CFRSESEEEVLLVSSSRHPDRWIVPGGGMEPE 78
Query: 174 EPPMTCAIREV 184
E P A+REV
Sbjct: 79 EEPSVAAVREV 89
>pdb|3HHJ|A Chain A, Crystal Structure Of Mutator Mutt From Bartonella Henselae
pdb|3HHJ|B Chain B, Crystal Structure Of Mutator Mutt From Bartonella Henselae
Length = 158
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 163 WGFPKGKVNQDEPPMTCAIREVK 185
W FP GKV Q E P IRE++
Sbjct: 58 WEFPGGKVEQGETPEASLIRELE 80
>pdb|1KT9|A Chain A, Crystal Structure Of C. Elegans Ap4a Hydrolase
pdb|1KTG|A Chain A, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
pdb|1KTG|B Chain B, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
Length = 138
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 150 QVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVK 185
+ LL+Q+ + W PKG V+ E AIRE K
Sbjct: 19 EFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETK 54
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 28.1 bits (61), Expect = 3.1, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 112 LTQVLLFLRQGLTVLDDWRHYKQSVPTFGAIL 143
L VL F+ Q +T D+WR+ + +V FG+I+
Sbjct: 367 LEPVLEFVEQNITA-DNWRNREAAVMAFGSIM 397
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 28.1 bits (61), Expect = 3.1, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 112 LTQVLLFLRQGLTVLDDWRHYKQSVPTFGAIL 143
L VL F+ Q +T D+WR+ + +V FG+I+
Sbjct: 367 LEPVLEFVEQNITA-DNWRNREAAVMAFGSIM 397
>pdb|3FJY|A Chain A, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
pdb|3FJY|B Chain B, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
Length = 364
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 163 WGFPKGKVNQDEPPMTCAIREV 184
W +PKGK+ Q+E A+RE+
Sbjct: 51 WSWPKGKLEQNETHRHAAVREI 72
>pdb|3U53|A Chain A, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|B Chain B, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|C Chain C, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|D Chain D, Crystal Structure Of Human Ap4a Hydrolase
Length = 155
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 144 IDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVK 185
+D + + LL+Q+ W PKG V E + A+RE +
Sbjct: 19 VDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRETQ 60
>pdb|1F3Y|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius L.
pdb|1JKN|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius
Complexed With Atp
Length = 165
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 162 SWGFPKGKVNQDEPPMTCAIREVK 185
+W P+G +++ E P AIRE++
Sbjct: 39 AWQMPQGGIDEGEDPRNAAIRELR 62
>pdb|1VM6|A Chain A, Crystal Structure Of Dihydrodipicolinate Reductase
(Tm1520) From Thermotoga Maritima At 2.27 A Resolution
pdb|1VM6|B Chain B, Crystal Structure Of Dihydrodipicolinate Reductase
(Tm1520) From Thermotoga Maritima At 2.27 A Resolution
pdb|1VM6|C Chain C, Crystal Structure Of Dihydrodipicolinate Reductase
(Tm1520) From Thermotoga Maritima At 2.27 A Resolution
pdb|1VM6|D Chain D, Crystal Structure Of Dihydrodipicolinate Reductase
(Tm1520) From Thermotoga Maritima At 2.27 A Resolution
Length = 228
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 94 RHYKQSVPTFGAILIDKSLTQVLLFLRQGLTVLDDW--------RHYKQSVPTFGAILID 145
R + VP A + + FL + + VL+DW +K+ P+ AIL++
Sbjct: 96 RELSKEVPVVQAYNFSIGINVLKRFLSELVKVLEDWDVEIVETHHRFKKDAPSGTAILLE 155
Query: 146 KSLTQVLLVQSF 157
+L + + + S
Sbjct: 156 SALGKSVPIHSL 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.142 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,730,963
Number of Sequences: 62578
Number of extensions: 217920
Number of successful extensions: 511
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 496
Number of HSP's gapped (non-prelim): 20
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (23.5 bits)