Query psy13064
Match_columns 192
No_of_seqs 220 out of 1242
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 18:32:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13064.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13064hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05026 DCP2: Dcp2, box A dom 100.0 1.4E-40 3.1E-45 247.0 5.6 85 13-97 1-85 (85)
2 KOG2937|consensus 100.0 1.1E-34 2.4E-39 258.3 2.2 131 10-191 6-136 (348)
3 cd03672 Dcp2p mRNA decapping e 99.6 3.4E-16 7.4E-21 124.5 7.6 53 136-189 1-53 (145)
4 cd04679 Nudix_Hydrolase_20 Mem 99.5 2.5E-14 5.5E-19 108.6 7.4 54 136-190 2-57 (125)
5 cd04696 Nudix_Hydrolase_37 Mem 99.5 2.2E-14 4.8E-19 109.1 7.0 54 136-190 2-55 (125)
6 PRK09438 nudB dihydroneopterin 99.5 3.1E-14 6.6E-19 111.6 7.6 52 138-190 9-60 (148)
7 cd03673 Ap6A_hydrolase Diadeno 99.5 2.1E-14 4.5E-19 108.3 6.2 53 136-189 1-55 (131)
8 cd03674 Nudix_Hydrolase_1 Memb 99.5 5.8E-14 1.3E-18 109.4 7.7 52 138-190 4-55 (138)
9 cd03671 Ap4A_hydrolase_plant_l 99.5 7.4E-14 1.6E-18 109.9 7.8 53 137-190 4-56 (147)
10 cd04670 Nudix_Hydrolase_12 Mem 99.5 6.6E-14 1.4E-18 106.6 7.2 53 137-190 3-56 (127)
11 cd04684 Nudix_Hydrolase_25 Con 99.5 6.7E-14 1.4E-18 105.1 7.1 52 137-190 1-54 (128)
12 cd04700 DR1025_like DR1025 fro 99.5 7E-14 1.5E-18 110.0 7.3 58 131-189 8-67 (142)
13 cd03430 GDPMH GDP-mannose glyc 99.5 1.1E-13 2.5E-18 109.4 7.4 55 135-190 11-67 (144)
14 cd04680 Nudix_Hydrolase_21 Mem 99.5 1.1E-13 2.4E-18 103.3 6.9 52 137-190 1-52 (120)
15 cd04669 Nudix_Hydrolase_11 Mem 99.5 1.8E-13 4E-18 104.4 7.4 51 139-190 3-54 (121)
16 cd04666 Nudix_Hydrolase_9 Memb 99.4 1.8E-13 3.9E-18 105.8 7.0 52 138-190 2-55 (122)
17 cd04677 Nudix_Hydrolase_18 Mem 99.4 2.2E-13 4.8E-18 103.4 7.1 53 135-189 6-58 (132)
18 cd04671 Nudix_Hydrolase_13 Mem 99.4 3.5E-13 7.5E-18 104.0 7.6 52 138-190 2-55 (123)
19 cd04676 Nudix_Hydrolase_17 Mem 99.4 3.3E-13 7.2E-18 100.8 7.3 52 136-189 2-53 (129)
20 cd04511 Nudix_Hydrolase_4 Memb 99.4 3E-13 6.6E-18 104.0 7.3 59 130-190 7-67 (130)
21 PF00293 NUDIX: NUDIX domain; 99.4 2.9E-13 6.3E-18 101.5 6.9 53 137-190 3-59 (134)
22 cd04691 Nudix_Hydrolase_32 Mem 99.4 3.6E-13 7.9E-18 102.2 7.4 50 139-190 3-56 (117)
23 PRK15434 GDP-mannose mannosyl 99.4 3.1E-13 6.7E-18 110.0 7.5 53 137-190 18-72 (159)
24 cd04673 Nudix_Hydrolase_15 Mem 99.4 3.5E-13 7.7E-18 100.6 7.1 50 138-189 2-53 (122)
25 cd04678 Nudix_Hydrolase_19 Mem 99.4 3.9E-13 8.4E-18 102.4 7.0 54 136-190 2-57 (129)
26 COG1051 ADP-ribose pyrophospha 99.4 4.1E-13 8.9E-18 107.3 7.4 59 131-191 5-65 (145)
27 cd04672 Nudix_Hydrolase_14 Mem 99.4 5.2E-13 1.1E-17 101.5 7.4 50 138-190 4-53 (123)
28 cd04687 Nudix_Hydrolase_28 Mem 99.4 5.8E-13 1.3E-17 101.7 7.7 53 137-191 2-55 (128)
29 cd03428 Ap4A_hydrolase_human_l 99.4 3.1E-13 6.8E-18 102.6 6.1 52 137-190 3-56 (130)
30 cd03427 MTH1 MutT homolog-1 (M 99.4 5.8E-13 1.3E-17 102.2 7.4 50 138-189 3-54 (137)
31 PLN02325 nudix hydrolase 99.4 6.9E-13 1.5E-17 105.2 7.6 56 132-189 5-62 (144)
32 cd04686 Nudix_Hydrolase_27 Mem 99.4 7.3E-13 1.6E-17 102.6 7.2 49 138-189 2-50 (131)
33 cd04681 Nudix_Hydrolase_22 Mem 99.4 7.4E-13 1.6E-17 100.7 7.1 52 138-190 3-56 (130)
34 cd04690 Nudix_Hydrolase_31 Mem 99.4 1E-12 2.2E-17 98.2 7.3 50 139-190 3-52 (118)
35 cd03424 ADPRase_NUDT5 ADP-ribo 99.4 8.8E-13 1.9E-17 101.4 7.1 53 137-190 3-58 (137)
36 PRK15472 nucleoside triphospha 99.4 1E-12 2.2E-17 102.3 7.3 51 138-190 6-60 (141)
37 cd04699 Nudix_Hydrolase_39 Mem 99.4 7.9E-13 1.7E-17 99.4 6.4 53 137-190 2-58 (129)
38 KOG0648|consensus 99.4 5.3E-13 1.1E-17 118.5 6.3 98 86-189 50-171 (295)
39 cd04683 Nudix_Hydrolase_24 Mem 99.4 1.1E-12 2.3E-17 98.6 7.0 51 138-190 2-55 (120)
40 cd04682 Nudix_Hydrolase_23 Mem 99.4 1.1E-12 2.3E-17 99.6 6.9 50 139-190 4-58 (122)
41 PRK00714 RNA pyrophosphohydrol 99.4 1.6E-12 3.4E-17 104.4 7.8 55 135-190 7-61 (156)
42 cd04695 Nudix_Hydrolase_36 Mem 99.4 1.1E-12 2.4E-17 101.1 6.6 52 139-190 2-56 (131)
43 cd03675 Nudix_Hydrolase_2 Cont 99.4 1.7E-12 3.7E-17 99.4 7.3 50 139-190 3-53 (134)
44 cd04689 Nudix_Hydrolase_30 Mem 99.4 1.9E-12 4.2E-17 98.2 7.4 48 139-189 4-51 (125)
45 cd04667 Nudix_Hydrolase_10 Mem 99.3 1.8E-12 3.9E-17 97.0 6.5 48 139-190 3-50 (112)
46 cd04664 Nudix_Hydrolase_7 Memb 99.3 2.4E-12 5.1E-17 98.2 6.9 52 139-190 4-57 (129)
47 cd04688 Nudix_Hydrolase_29 Mem 99.3 3E-12 6.5E-17 97.3 7.1 49 139-190 4-52 (126)
48 cd03429 NADH_pyrophosphatase N 99.3 1.9E-12 4.2E-17 100.4 6.1 52 138-190 2-54 (131)
49 KOG2937|consensus 99.3 9.4E-14 2E-18 124.7 -2.3 151 3-189 139-292 (348)
50 cd04661 MRP_L46 Mitochondrial 99.3 2.5E-12 5.4E-17 100.0 5.6 43 148-190 12-55 (132)
51 cd04693 Nudix_Hydrolase_34 Mem 99.3 5.5E-12 1.2E-16 96.2 6.5 50 139-190 3-57 (127)
52 cd04662 Nudix_Hydrolase_5 Memb 99.3 6.9E-12 1.5E-16 99.3 6.8 53 138-190 2-62 (126)
53 PRK10546 pyrimidine (deoxy)nuc 99.3 9.9E-12 2.2E-16 95.1 7.2 53 136-190 4-59 (135)
54 cd03426 CoAse Coenzyme A pyrop 99.3 1.1E-11 2.3E-16 99.2 7.0 52 139-190 4-62 (157)
55 PRK10776 nucleoside triphospha 99.2 2.5E-11 5.3E-16 91.0 7.6 52 137-189 5-59 (129)
56 TIGR00052 nudix-type nucleosid 99.2 1.2E-11 2.6E-16 102.6 5.9 55 137-191 45-107 (185)
57 PRK11762 nudE adenosine nucleo 99.2 3E-11 6.5E-16 99.3 7.5 50 139-189 50-102 (185)
58 cd04674 Nudix_Hydrolase_16 Mem 99.2 4.6E-11 1E-15 93.1 7.8 55 134-190 2-58 (118)
59 cd04697 Nudix_Hydrolase_38 Mem 99.2 3E-11 6.6E-16 92.6 6.5 50 139-189 3-57 (126)
60 cd02883 Nudix_Hydrolase Nudix 99.2 4E-11 8.7E-16 87.2 6.7 52 138-190 2-54 (123)
61 TIGR00586 mutt mutator mutT pr 99.2 6.3E-11 1.4E-15 89.3 7.6 52 138-190 6-60 (128)
62 cd03425 MutT_pyrophosphohydrol 99.2 6.4E-11 1.4E-15 87.3 7.1 53 137-190 2-57 (124)
63 cd04685 Nudix_Hydrolase_26 Mem 99.2 7.2E-11 1.6E-15 92.7 7.5 52 138-190 2-57 (133)
64 PRK10729 nudF ADP-ribose pyrop 99.2 6.8E-11 1.5E-15 99.5 7.6 54 137-190 50-111 (202)
65 PRK05379 bifunctional nicotina 99.2 6.4E-11 1.4E-15 106.4 7.7 56 132-189 199-256 (340)
66 cd04694 Nudix_Hydrolase_35 Mem 99.2 8.7E-11 1.9E-15 93.6 7.4 51 139-190 4-58 (143)
67 KOG2839|consensus 99.2 5.8E-11 1.3E-15 96.0 6.4 54 136-189 9-64 (145)
68 cd04665 Nudix_Hydrolase_8 Memb 99.2 6.7E-11 1.5E-15 91.8 6.4 48 139-190 3-50 (118)
69 cd02885 IPP_Isomerase Isopente 99.2 6.2E-11 1.3E-15 95.4 6.4 53 137-190 31-88 (165)
70 PRK00241 nudC NADH pyrophospha 99.1 5.8E-11 1.2E-15 103.3 6.2 95 88-190 90-185 (256)
71 cd04692 Nudix_Hydrolase_33 Mem 99.1 1.6E-10 3.5E-15 90.5 6.8 52 139-190 5-63 (144)
72 TIGR02705 nudix_YtkD nucleosid 99.1 1.7E-10 3.8E-15 94.2 7.1 40 149-190 35-74 (156)
73 COG0494 MutT NTP pyrophosphohy 99.1 2.1E-10 4.7E-15 84.0 6.7 42 149-190 24-66 (161)
74 PRK15393 NUDIX hydrolase YfcD; 99.1 1.8E-10 3.8E-15 94.7 6.7 53 137-190 38-95 (180)
75 PRK03759 isopentenyl-diphospha 99.0 4.6E-10 9.9E-15 92.2 6.3 53 137-190 35-92 (184)
76 cd04663 Nudix_Hydrolase_6 Memb 99.0 9.9E-10 2.1E-14 86.8 6.8 50 139-190 3-53 (126)
77 PRK10707 putative NUDIX hydrol 99.0 1.4E-09 3.1E-14 90.7 7.2 53 138-190 32-90 (190)
78 PRK15009 GDP-mannose pyrophosp 98.9 1.9E-09 4.1E-14 90.2 7.1 53 137-190 46-107 (191)
79 TIGR02150 IPP_isom_1 isopenten 98.9 1.8E-09 4E-14 86.6 6.2 51 137-190 28-83 (158)
80 PRK08999 hypothetical protein; 98.9 4.8E-09 1.1E-13 91.7 7.4 53 136-189 5-60 (312)
81 PLN03143 nudix hydrolase; Prov 98.8 7.5E-09 1.6E-13 92.2 6.8 53 138-190 130-188 (291)
82 cd03670 ADPRase_NUDT9 ADP-ribo 98.7 1.8E-08 3.9E-13 84.5 6.1 50 139-189 37-88 (186)
83 KOG3084|consensus 98.7 1.4E-08 3.1E-13 91.3 5.8 61 130-190 181-242 (345)
84 PLN02709 nudix hydrolase 98.7 4.2E-08 9E-13 84.5 8.3 42 149-190 51-97 (222)
85 cd03676 Nudix_hydrolase_3 Memb 98.7 3.2E-08 7E-13 80.5 6.0 48 143-190 41-94 (180)
86 KOG3041|consensus 98.3 1.1E-06 2.4E-11 75.0 6.5 55 136-190 73-132 (225)
87 COG4119 Predicted NTP pyrophos 98.1 3.5E-06 7.7E-11 67.9 5.2 53 138-190 5-65 (161)
88 PLN02791 Nudix hydrolase homol 98.1 9.2E-06 2E-10 80.7 7.2 51 139-189 35-90 (770)
89 COG2816 NPY1 NTP pyrophosphohy 98.0 6.7E-06 1.4E-10 73.1 5.2 59 130-190 138-197 (279)
90 PLN02552 isopentenyl-diphospha 97.8 4.3E-05 9.3E-10 66.7 6.5 52 138-190 58-131 (247)
91 KOG3069|consensus 97.8 5.5E-05 1.2E-09 66.0 6.6 41 149-189 58-103 (246)
92 cd03431 DNA_Glycosylase_C DNA 97.5 0.00031 6.6E-09 51.6 6.5 49 139-189 6-57 (118)
93 PF13869 NUDIX_2: Nucleotide h 96.9 0.0035 7.7E-08 53.1 6.9 62 127-190 35-97 (188)
94 KOG4195|consensus 96.6 0.0022 4.7E-08 56.1 3.7 49 139-188 127-177 (275)
95 KOG1689|consensus 94.1 0.18 3.9E-06 42.8 6.5 53 136-190 70-123 (221)
96 PLN02839 nudix hydrolase 92.0 0.12 2.6E-06 48.0 2.7 26 165-190 239-264 (372)
97 KOG4432|consensus 86.5 0.7 1.5E-05 42.4 3.4 60 131-190 21-108 (405)
98 PF14815 NUDIX_4: NUDIX domain 86.5 0.84 1.8E-05 34.0 3.3 44 141-186 2-48 (114)
99 KOG4548|consensus 84.8 1.5 3.2E-05 39.0 4.5 42 150-191 140-183 (263)
100 COG1443 Idi Isopentenyldiphosp 84.5 1.3 2.9E-05 37.5 3.8 51 139-190 36-91 (185)
101 COG4112 Predicted phosphoester 82.0 3.2 7E-05 35.1 5.1 55 131-189 58-126 (203)
102 KOG4432|consensus 63.5 12 0.00026 34.5 4.5 54 138-191 231-314 (405)
103 PF07026 DUF1317: Protein of u 42.0 44 0.00095 23.6 3.6 19 160-178 21-39 (60)
104 PF03487 IL13: Interleukin-13; 36.7 32 0.00069 22.6 2.1 24 166-189 14-37 (43)
105 cd09232 Snurportin-1_C C-termi 36.2 22 0.00048 29.8 1.6 20 162-181 57-79 (186)
106 TIGR01084 mutY A/G-specific ad 32.9 93 0.002 27.6 5.1 22 147-168 237-261 (275)
107 TIGR03238 dnd_assoc_3 dnd syst 25.2 58 0.0012 31.8 2.6 85 8-93 260-372 (504)
108 PF14044 NETI: NETI protein 23.7 60 0.0013 22.7 1.8 16 169-184 3-18 (57)
109 PRK10880 adenine DNA glycosyla 21.8 1.4E+02 0.0031 27.5 4.4 21 148-168 241-264 (350)
No 1
>PF05026 DCP2: Dcp2, box A domain; InterPro: IPR007722 This presumed domain is always found to the N-terminal side of the NUDIX hydrolase domain IPR000086 from INTERPRO. This domain appears to be specific to mRNA decapping protein 2 P53550 from SWISSPROT and its close homologues. This region has been termed Box A [].; GO: 0003723 RNA binding, 0016787 hydrolase activity, 0030145 manganese ion binding; PDB: 2QKM_H 2A6T_B 2QKL_B.
Probab=100.00 E-value=1.4e-40 Score=246.98 Aligned_cols=85 Identities=48% Similarity=0.850 Sum_probs=76.0
Q ss_pred hHHHHhhhhhhcccCCcccccchhHHHHHHhhhhhhhhhcccccCccCcccCHHHHHHHHHhhCCcchhhhhhhhhHHHH
Q psy13064 13 KDILDDLSSRFVINIPHEERGDVIRICFQMELAYWFYLDFYCTQDESLFKAGLKEFFFQMFHHIPSLTHFARKIDTVLDD 92 (192)
Q Consensus 13 ~~ilddl~~RFiiN~P~ee~~~~~rl~fqie~A~WfY~Df~~~~~~~lp~~~~~~F~~~lf~~~p~l~~~~~~~~~~~~~ 92 (192)
++|||||++|||+|+|++|++|++|||||||+|||||+||+|+++|+||++++++|+++||+|||.|+++..++++++++
T Consensus 1 ~~iLdDL~~RFI~N~P~eel~~~eRl~FqiE~AhWfY~Df~~~~~p~Lp~~~lk~F~~~if~~cp~L~~~~~~~~~~~~~ 80 (85)
T PF05026_consen 1 EEILDDLCSRFILNLPEEELSSFERLCFQIEEAHWFYEDFYREQNPSLPSMSLKEFAKQIFQHCPLLRPFTGNHDEALKK 80 (85)
T ss_dssp -HHHHHHHHHHTTTS-CCCST-HHHHHHHHHHHHHHHHHTTTTTTTTS----HHHHHHHHHTT-GHHCCCCCHCHHHHHH
T ss_pred CcHHHHHHHHHHhcCCHHHHccHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHCHhHHHhhccHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcc
Q psy13064 93 WRHYK 97 (192)
Q Consensus 93 ~~~y~ 97 (192)
|++||
T Consensus 81 f~~YK 85 (85)
T PF05026_consen 81 FKKYK 85 (85)
T ss_dssp HHHHS
T ss_pred HHccC
Confidence 99997
No 2
>KOG2937|consensus
Probab=100.00 E-value=1.1e-34 Score=258.27 Aligned_cols=131 Identities=40% Similarity=0.689 Sum_probs=121.7
Q ss_pred CCchHHHHhhhhhhcccCCcccccchhHHHHHHhhhhhhhhhcccccCccCcccCHHHHHHHHHhhCCcchhhhhhhhhH
Q psy13064 10 TIRKDILDDLSSRFVINIPHEERGDVIRICFQMELAYWFYLDFYCTQDESLFKAGLKEFFFQMFHHIPSLTHFARKIDTV 89 (192)
Q Consensus 10 ~~~~~ilddl~~RFiiN~P~ee~~~~~rl~fqie~A~WfY~Df~~~~~~~lp~~~~~~F~~~lf~~~p~l~~~~~~~~~~ 89 (192)
.....+||||++|||+|+|.|+.+|.+|+||++|+|||||+||....+|+| +||.|+||...+|++
T Consensus 6 ~~~~~~L~dl~~rfi~n~p~e~q~S~Er~~f~ve~a~w~y~d~~~~ndpsl--------------~c~~~~~~~~~~~e~ 71 (348)
T KOG2937|consen 6 TSSDRILDDLLSRFILNCPNEDQSSVERPLFSVEKALWFYEDFINKNDPSL--------------QCPLLWPWKNEKDEA 71 (348)
T ss_pred chHHHHHHHHHHHHHhcCChhhhhhhhcchHHHHHHHHHHHHHHhcCCccc--------------CCccccchhhHHHHH
Confidence 456789999999999999999999999999999999999999996666655 999999999999999
Q ss_pred HHHhhhccccccccceeeeccchhhhhHhhhhhhhhhhhhhhcccccceEEEEEEeCCCCEEEEEEEeCCCCcEEcCcee
Q psy13064 90 LDDWRHYKQSVPTFGAILIDKSLTQVLLFLRQGLTVLDDWRHYKQSVPTFGAILIDKSLTQVLLVQSFFARASWGFPKGK 169 (192)
Q Consensus 90 ~~~~~~y~~~vp~~~~i~~~~~~~~~~~v~~~~~~~l~~~~~Y~~~ip~~GaIi~n~~~~kVLLVk~~~~~~~W~fPkGk 169 (192)
+.+|..||.++|+ .||+++++...+||||+++. +.+|+||+||
T Consensus 72 ~~~f~~yk~~iPv------------------------------------~ga~ild~~~sr~llv~g~q-a~sw~fprgK 114 (348)
T KOG2937|consen 72 FVDFAPYKARIPV------------------------------------RGAIILDEKRSRCLLVKGWQ-ASSWSFPRGK 114 (348)
T ss_pred HHhhccccCCCCC------------------------------------chHhhhhhhhhhhheeecee-cccccccCcc
Confidence 9999999998888 99999999999999999974 5569999999
Q ss_pred cCCCCCHHHHHHHHHHHHhccC
Q psy13064 170 VNQDEPPMTCAIREVKIIFCQH 191 (192)
Q Consensus 170 ie~gEs~~ecAiREv~EE~g~~ 191 (192)
+.++|+..+||+|||.||+|+-
T Consensus 115 ~~kdesd~~caiReV~eetgfD 136 (348)
T KOG2937|consen 115 ISKDESDSDCAIREVTEETGFD 136 (348)
T ss_pred ccccchhhhcchhcccchhhcC
Confidence 9999999999999999999973
No 3
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.65 E-value=3.4e-16 Score=124.52 Aligned_cols=53 Identities=47% Similarity=0.858 Sum_probs=48.5
Q ss_pred cceEEEEEEeCCCCEEEEEEEeCCCCcEEcCceecCCCCCHHHHHHHHHHHHhc
Q psy13064 136 VPTFGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVKIIFC 189 (192)
Q Consensus 136 ip~~GaIi~n~~~~kVLLVk~~~~~~~W~fPkGkie~gEs~~ecAiREv~EE~g 189 (192)
||++|||++|++.++|||+|++. .+.|+||||+++.|||+.+||+||++||||
T Consensus 1 ~p~~gaii~~~~~~~vLLvr~~~-~~~W~lPGG~ve~gEs~~~AA~REl~EETG 53 (145)
T cd03672 1 IPVYGAIILNEDLDKVLLVKGWK-SKSWSFPKGKINKDEDDHDCAIREVYEETG 53 (145)
T ss_pred CCeeEEEEEeCCCCEEEEEEecC-CCCEECCCccCCCCcCHHHHHHHHHHHhhC
Confidence 57799999998767999999864 458999999999999999999999999998
No 4
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.53 E-value=2.5e-14 Score=108.57 Aligned_cols=54 Identities=26% Similarity=0.405 Sum_probs=47.2
Q ss_pred cceEEEEEEeCCCCEEEEEEEeC--CCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 136 VPTFGAILIDKSLTQVLLVQSFF--ARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 136 ip~~GaIi~n~~~~kVLLVk~~~--~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
.+++|+++++.+ ++|||+++.. .++.|.+|||+++.|||+.+||+||++||||-
T Consensus 2 ~~~~~~~i~~~~-~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl 57 (125)
T cd04679 2 RVGCGAAILRDD-GKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGL 57 (125)
T ss_pred ceEEEEEEECCC-CEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCC
Confidence 457899999875 6999998753 35789999999999999999999999999994
No 5
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.53 E-value=2.2e-14 Score=109.10 Aligned_cols=54 Identities=30% Similarity=0.392 Sum_probs=47.2
Q ss_pred cceEEEEEEeCCCCEEEEEEEeCCCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 136 VPTFGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 136 ip~~GaIi~n~~~~kVLLVk~~~~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+++++++++|++ +++||+|+...++.|++|||+++.|||+.+||+||++||||=
T Consensus 2 ~~~v~~~i~~~~-~~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl 55 (125)
T cd04696 2 LVTVGALIYAPD-GRILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGL 55 (125)
T ss_pred ccEEEEEEECCC-CCEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCC
Confidence 456889999865 699999875346889999999999999999999999999994
No 6
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.52 E-value=3.1e-14 Score=111.63 Aligned_cols=52 Identities=25% Similarity=0.279 Sum_probs=45.3
Q ss_pred eEEEEEEeCCCCEEEEEEEeCCCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 138 TFGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 138 ~~GaIi~n~~~~kVLLVk~~~~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
++++++++.+ +++||+++....+.|++|||+++.|||+.+||+||++||||=
T Consensus 9 ~v~~vi~~~~-~~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl 60 (148)
T PRK09438 9 SVLVVIYTPD-LGVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGI 60 (148)
T ss_pred EEEEEEEeCC-CeEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCc
Confidence 5778888865 689999875445789999999999999999999999999993
No 7
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.52 E-value=2.1e-14 Score=108.30 Aligned_cols=53 Identities=32% Similarity=0.495 Sum_probs=46.9
Q ss_pred cceEEEEEEeCCC--CEEEEEEEeCCCCcEEcCceecCCCCCHHHHHHHHHHHHhc
Q psy13064 136 VPTFGAILIDKSL--TQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVKIIFC 189 (192)
Q Consensus 136 ip~~GaIi~n~~~--~kVLLVk~~~~~~~W~fPkGkie~gEs~~ecAiREv~EE~g 189 (192)
++++|||+++.+. ++|||+++. ..+.|.||||+++.|||+.+||.||++||||
T Consensus 1 ~~~a~~ii~~~~~~~~~vLl~~~~-~~~~w~~PgG~v~~gEs~~~aa~REl~EEtG 55 (131)
T cd03673 1 VLAAGGVVFRGSDGGIEVLLIHRP-RGDDWSLPKGKLEPGETPPEAAVREVEEETG 55 (131)
T ss_pred CeeEEEEEEEccCCCeEEEEEEcC-CCCcccCCCCccCCCCCHHHHHHHHHhhhhC
Confidence 3568999998753 799999986 3478999999999999999999999999998
No 8
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.50 E-value=5.8e-14 Score=109.42 Aligned_cols=52 Identities=27% Similarity=0.390 Sum_probs=46.4
Q ss_pred eEEEEEEeCCCCEEEEEEEeCCCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 138 TFGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 138 ~~GaIi~n~~~~kVLLVk~~~~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+++++++|++.++|||+++. ..+.|++|||+++.|||+.+||+||++||||-
T Consensus 4 ~~~~~v~~~~~~~vLLv~r~-~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl 55 (138)
T cd03674 4 TASAFVVNPDRGKVLLTHHR-KLGSWLQPGGHIDPDESLLEAALRELREETGI 55 (138)
T ss_pred EEEEEEEeCCCCeEEEEEEc-CCCcEECCceecCCCCCHHHHHHHHHHHHHCC
Confidence 47889999765799999975 46789999999999999999999999999994
No 9
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.49 E-value=7.4e-14 Score=109.89 Aligned_cols=53 Identities=25% Similarity=0.545 Sum_probs=47.8
Q ss_pred ceEEEEEEeCCCCEEEEEEEeCCCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 137 PTFGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 137 p~~GaIi~n~~~~kVLLVk~~~~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+++|+|++|.+ ++|||+++...++.|.+|||+++.||++.+||+||++||||-
T Consensus 4 ~~v~~ii~~~~-~~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl 56 (147)
T cd03671 4 PNVGVVLFNED-GKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGL 56 (147)
T ss_pred ceEEEEEEeCC-CEEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCC
Confidence 67999999976 699999986544799999999999999999999999999995
No 10
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.49 E-value=6.6e-14 Score=106.57 Aligned_cols=53 Identities=26% Similarity=0.382 Sum_probs=46.5
Q ss_pred ceEEEEEEeCCCCEEEEEEEeCC-CCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 137 PTFGAILIDKSLTQVLLVQSFFA-RASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 137 p~~GaIi~n~~~~kVLLVk~~~~-~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
++++|+++|++ ++|||+++... ++.|.||||+++.|||+.+||+||++||+|=
T Consensus 3 ~~~~~~v~~~~-~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl 56 (127)
T cd04670 3 VGVGGLVLNEK-NEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGI 56 (127)
T ss_pred eEEEEEEEcCC-CeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCC
Confidence 46888989876 69999987532 6889999999999999999999999999994
No 11
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.49 E-value=6.7e-14 Score=105.13 Aligned_cols=52 Identities=23% Similarity=0.264 Sum_probs=45.5
Q ss_pred ceEEEEEEeCCCCEEEEEEEeCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 137 PTFGAILIDKSLTQVLLVQSFFA--RASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 137 p~~GaIi~n~~~~kVLLVk~~~~--~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+++++|++++ ++|||+++... ++.|.+|||+++.|||+.+||+||++||||-
T Consensus 1 ~~~~~ii~~~--~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl 54 (128)
T cd04684 1 FGAYAVIPRD--GKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGL 54 (128)
T ss_pred CeeEEEEEeC--CEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCc
Confidence 3577888886 69999998642 4899999999999999999999999999994
No 12
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.49 E-value=7e-14 Score=109.99 Aligned_cols=58 Identities=29% Similarity=0.437 Sum_probs=49.8
Q ss_pred hcccccceEEEEEEeCCCCEEEEEEEeC--CCCcEEcCceecCCCCCHHHHHHHHHHHHhc
Q psy13064 131 HYKQSVPTFGAILIDKSLTQVLLVQSFF--ARASWGFPKGKVNQDEPPMTCAIREVKIIFC 189 (192)
Q Consensus 131 ~Y~~~ip~~GaIi~n~~~~kVLLVk~~~--~~~~W~fPkGkie~gEs~~ecAiREv~EE~g 189 (192)
.+....+++|++++|.+ +++||+++.. .++.|+||||++++|||+.+||+||++||||
T Consensus 8 ~~~~~~~av~~vv~~~~-~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG 67 (142)
T cd04700 8 HVEVEARAAGAVILNER-NDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETG 67 (142)
T ss_pred CcceeeeeEEEEEEeCC-CcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhC
Confidence 45566778999999965 5899998653 3578999999999999999999999999999
No 13
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.47 E-value=1.1e-13 Score=109.35 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=47.4
Q ss_pred ccceEEEEEEeCCCCEEEEEEEeC--CCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 135 SVPTFGAILIDKSLTQVLLVQSFF--ARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 135 ~ip~~GaIi~n~~~~kVLLVk~~~--~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
++.++++||+|.+ +++||+|+.. .++.|.||||+++.|||+.+||+||++||||-
T Consensus 11 p~v~v~~vI~~~~-g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl 67 (144)
T cd03430 11 PLVSIDLIVENED-GQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGL 67 (144)
T ss_pred CeEEEEEEEEeCC-CeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCC
Confidence 3457888988875 6999998753 35789999999999999999999999999994
No 14
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.47 E-value=1.1e-13 Score=103.34 Aligned_cols=52 Identities=25% Similarity=0.339 Sum_probs=44.9
Q ss_pred ceEEEEEEeCCCCEEEEEEEeCCCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 137 PTFGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 137 p~~GaIi~n~~~~kVLLVk~~~~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
|+++++++|++ +++||+++.. .+.|.||||+++.|||+.+||+||++||||=
T Consensus 1 ~~~~~~i~~~~-~~vLL~~r~~-~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~ 52 (120)
T cd04680 1 LGARAVVTDAD-GRVLLVRHTY-GPGWYLPGGGLERGETFAEAARRELLEELGI 52 (120)
T ss_pred CceEEEEECCC-CeEEEEEECC-CCcEeCCCCcCCCCCCHHHHHHHHHHHHHCC
Confidence 35778888875 6999998753 4489999999999999999999999999993
No 15
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.46 E-value=1.8e-13 Score=104.43 Aligned_cols=51 Identities=22% Similarity=0.398 Sum_probs=43.7
Q ss_pred EEEEEEeCCCCEEEEEEEeC-CCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 139 FGAILIDKSLTQVLLVQSFF-ARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 139 ~GaIi~n~~~~kVLLVk~~~-~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
++||+++++ ++|||+++.. ..+.|+||||+++.|||+.+||+||++||||=
T Consensus 3 ~~~ii~~~~-~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl 54 (121)
T cd04669 3 ASIVIINDQ-GEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGL 54 (121)
T ss_pred eEEEEEeCC-CEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCe
Confidence 667777764 6999998764 24689999999999999999999999999983
No 16
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.45 E-value=1.8e-13 Score=105.76 Aligned_cols=52 Identities=35% Similarity=0.388 Sum_probs=45.8
Q ss_pred eEEEEEEeCC--CCEEEEEEEeCCCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 138 TFGAILIDKS--LTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 138 ~~GaIi~n~~--~~kVLLVk~~~~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
++|+|+++.+ ..++||+++. ..+.|.||||+++.|||+.+||+||++||||-
T Consensus 2 ~~g~v~~~~~~~~~~vLLv~~~-~~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~ 55 (122)
T cd04666 2 QAGAIPYRETGGEVEVLLVTSR-RTGRWIVPKGGPEKDESPAEAAAREAWEEAGV 55 (122)
T ss_pred EEEEEEEEEcCCceEEEEEEec-CCCeEECCCCCcCCCCCHHHHHHHHHHHHhCC
Confidence 4899999865 4689999975 34789999999999999999999999999993
No 17
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.45 E-value=2.2e-13 Score=103.44 Aligned_cols=53 Identities=28% Similarity=0.408 Sum_probs=45.8
Q ss_pred ccceEEEEEEeCCCCEEEEEEEeCCCCcEEcCceecCCCCCHHHHHHHHHHHHhc
Q psy13064 135 SVPTFGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVKIIFC 189 (192)
Q Consensus 135 ~ip~~GaIi~n~~~~kVLLVk~~~~~~~W~fPkGkie~gEs~~ecAiREv~EE~g 189 (192)
..+++++++++.+ +++||+++. ..+.|.||||+++.|||+.+||+||++||||
T Consensus 6 ~~~~~~~~v~~~~-~~vLL~~r~-~~~~w~~PgG~v~~gEt~~~aa~REl~EE~G 58 (132)
T cd04677 6 ILVGAGVILLNEQ-GEVLLQKRS-DTGDWGLPGGAMELGESLEETARRELKEETG 58 (132)
T ss_pred cccceEEEEEeCC-CCEEEEEec-CCCcEECCeeecCCCCCHHHHHHHHHHHHhC
Confidence 3456788888865 689999875 3478999999999999999999999999999
No 18
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.43 E-value=3.5e-13 Score=103.99 Aligned_cols=52 Identities=27% Similarity=0.417 Sum_probs=45.0
Q ss_pred eEEEEEEeCCCCEEEEEEEeC--CCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 138 TFGAILIDKSLTQVLLVQSFF--ARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 138 ~~GaIi~n~~~~kVLLVk~~~--~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+++++++|.+ ++|||+++.+ .++.|++|||+++.|||+.+||+||++||||=
T Consensus 2 ~~~~vv~~~~-~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~ 55 (123)
T cd04671 2 IVAAVILNNQ-GEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGL 55 (123)
T ss_pred EEEEEEEcCC-CEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCC
Confidence 4778888865 7999998753 25789999999999999999999999999983
No 19
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.43 E-value=3.3e-13 Score=100.75 Aligned_cols=52 Identities=31% Similarity=0.537 Sum_probs=46.2
Q ss_pred cceEEEEEEeCCCCEEEEEEEeCCCCcEEcCceecCCCCCHHHHHHHHHHHHhc
Q psy13064 136 VPTFGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVKIIFC 189 (192)
Q Consensus 136 ip~~GaIi~n~~~~kVLLVk~~~~~~~W~fPkGkie~gEs~~ecAiREv~EE~g 189 (192)
+|++++|++|++ +++||+++. ..+.|.||+|+++.|||+.+||+||++||||
T Consensus 2 ~~~v~~ii~~~~-~~vLl~~r~-~~~~w~lPgG~v~~~E~~~~aa~REl~EE~G 53 (129)
T cd04676 2 LPGVTAVVRDDE-GRVLLIRRS-DNGLWALPGGAVEPGESPADTAVREVREETG 53 (129)
T ss_pred cceEEEEEECCC-CeEEEEEec-CCCcEECCeeccCCCCCHHHHHHHHHHHHhC
Confidence 466888888875 699999986 3588999999999999999999999999998
No 20
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.43 E-value=3e-13 Score=104.04 Aligned_cols=59 Identities=22% Similarity=0.277 Sum_probs=49.6
Q ss_pred hhcccccceEEEEEEeCCCCEEEEEEEeC--CCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 130 RHYKQSVPTFGAILIDKSLTQVLLVQSFF--ARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 130 ~~Y~~~ip~~GaIi~n~~~~kVLLVk~~~--~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
.-|.+...++|+|++++ +++||+++.. ..+.|++|||+++.||++.+||.||++||||-
T Consensus 7 ~~~~~~~~~v~~ii~~~--~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl 67 (130)
T cd04511 7 IHYQNPKIIVGCVPEWE--GKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGA 67 (130)
T ss_pred ccCCCCcEEEEEEEecC--CEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCC
Confidence 34666777788888875 6999998742 35789999999999999999999999999993
No 21
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.43 E-value=2.9e-13 Score=101.45 Aligned_cols=53 Identities=26% Similarity=0.424 Sum_probs=47.5
Q ss_pred ceEEEEEEeCCCCEEEEEEEeCCC----CcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 137 PTFGAILIDKSLTQVLLVQSFFAR----ASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 137 p~~GaIi~n~~~~kVLLVk~~~~~----~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+++++|++|++. ++||+++.... +.|.+|||+++.|||+.+||+||+.||||-
T Consensus 3 ~~v~~ii~~~~~-~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~ 59 (134)
T PF00293_consen 3 RAVGVIIFNEDG-KVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGL 59 (134)
T ss_dssp EEEEEEEEETTT-EEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSE
T ss_pred CEEEEEEEeCCc-EEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccc
Confidence 468999999874 99999987543 789999999999999999999999999985
No 22
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.43 E-value=3.6e-13 Score=102.24 Aligned_cols=50 Identities=20% Similarity=0.306 Sum_probs=42.6
Q ss_pred EEEEEEeCCCCEEEEEEEeC----CCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 139 FGAILIDKSLTQVLLVQSFF----ARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 139 ~GaIi~n~~~~kVLLVk~~~----~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
++|+++++ ++|||+|+.. ..+.|+||||+++.|||+.+||+||++||||=
T Consensus 3 v~~vi~~~--~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl 56 (117)
T cd04691 3 VVGVLFSD--DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGV 56 (117)
T ss_pred EEEEEEEC--CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCC
Confidence 55666665 6999998753 34789999999999999999999999999994
No 23
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.43 E-value=3.1e-13 Score=109.97 Aligned_cols=53 Identities=21% Similarity=0.215 Sum_probs=45.8
Q ss_pred ceEEEEEEeCCCCEEEEEEEeC--CCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 137 PTFGAILIDKSLTQVLLVQSFF--ARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 137 p~~GaIi~n~~~~kVLLVk~~~--~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
.++++||.++. ++|||+|+.. ..+.|+||||+++.|||+.+||+||++||||-
T Consensus 18 ~~v~~vI~~~~-g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl 72 (159)
T PRK15434 18 ISLDFIVENSR-GEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGL 72 (159)
T ss_pred EEEEEEEECCC-CEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCC
Confidence 46888888764 7999999752 24789999999999999999999999999995
No 24
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.43 E-value=3.5e-13 Score=100.62 Aligned_cols=50 Identities=32% Similarity=0.448 Sum_probs=43.3
Q ss_pred eEEEEEEeCCCCEEEEEEEeC--CCCcEEcCceecCCCCCHHHHHHHHHHHHhc
Q psy13064 138 TFGAILIDKSLTQVLLVQSFF--ARASWGFPKGKVNQDEPPMTCAIREVKIIFC 189 (192)
Q Consensus 138 ~~GaIi~n~~~~kVLLVk~~~--~~~~W~fPkGkie~gEs~~ecAiREv~EE~g 189 (192)
+++++++++ +++||+++.+ .++.|.||||+++.|||+.+||+||++||||
T Consensus 2 ~v~~ii~~~--~~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtG 53 (122)
T cd04673 2 AVGAVVFRG--GRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETG 53 (122)
T ss_pred cEEEEEEEC--CEEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhC
Confidence 467777775 5899998763 2468999999999999999999999999999
No 25
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.42 E-value=3.9e-13 Score=102.38 Aligned_cols=54 Identities=24% Similarity=0.326 Sum_probs=47.1
Q ss_pred cceEEEEEEeCCCCEEEEEEEeC--CCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 136 VPTFGAILIDKSLTQVLLVQSFF--ARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 136 ip~~GaIi~n~~~~kVLLVk~~~--~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
.+++++||+|++ +++||+++.. .++.|.+|||+++.|||+.+||.||++||||=
T Consensus 2 ~~~v~~ii~~~~-~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl 57 (129)
T cd04678 2 RVGVGVFVLNPK-GKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGL 57 (129)
T ss_pred ceEEEEEEECCC-CeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCC
Confidence 356889999876 6999998753 36799999999999999999999999999993
No 26
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.42 E-value=4.1e-13 Score=107.33 Aligned_cols=59 Identities=25% Similarity=0.398 Sum_probs=50.8
Q ss_pred hcccccceEEEEEEeCCCCEEEEEEEeCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhccC
Q psy13064 131 HYKQSVPTFGAILIDKSLTQVLLVQSFFA--RASWGFPKGKVNQDEPPMTCAIREVKIIFCQH 191 (192)
Q Consensus 131 ~Y~~~ip~~GaIi~n~~~~kVLLVk~~~~--~~~W~fPkGkie~gEs~~ecAiREv~EE~g~~ 191 (192)
.|..+.+++|+++...+ +|||||+... .|.|++|||+++.|||+.+||.||++||||-.
T Consensus 5 ~~~~p~~~v~~~i~~~~--~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~ 65 (145)
T COG1051 5 GYRTPLVAVGALIVRNG--RILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLR 65 (145)
T ss_pred cCCCcceeeeEEEEeCC--EEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCc
Confidence 46677778999988865 9999998643 47899999999999999999999999999953
No 27
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.42 E-value=5.2e-13 Score=101.49 Aligned_cols=50 Identities=22% Similarity=0.352 Sum_probs=44.0
Q ss_pred eEEEEEEeCCCCEEEEEEEeCCCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 138 TFGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 138 ~~GaIi~n~~~~kVLLVk~~~~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+++|+++++ +++||+++. ..+.|.||||+++.|||+.+||+||++||||-
T Consensus 4 ~v~~~i~~~--~~vLL~~~~-~~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~ 53 (123)
T cd04672 4 DVRAAIFKD--GKILLVREK-SDGLWSLPGGWADVGLSPAENVVKEVKEETGL 53 (123)
T ss_pred eEEEEEEEC--CEEEEEEEc-CCCcEeCCccccCCCCCHHHHHHHHHHHHhCC
Confidence 466777775 699999986 37899999999999999999999999999995
No 28
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.42 E-value=5.8e-13 Score=101.66 Aligned_cols=53 Identities=21% Similarity=0.229 Sum_probs=45.3
Q ss_pred ceEEEEEEeCCCCEEEEEEEeC-CCCcEEcCceecCCCCCHHHHHHHHHHHHhccC
Q psy13064 137 PTFGAILIDKSLTQVLLVQSFF-ARASWGFPKGKVNQDEPPMTCAIREVKIIFCQH 191 (192)
Q Consensus 137 p~~GaIi~n~~~~kVLLVk~~~-~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~~ 191 (192)
++++||++++ ++|||+++.. .++.|.+|||+++.|||+.+||+||+.||||-+
T Consensus 2 ~~a~~iv~~~--~~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~ 55 (128)
T cd04687 2 NSAKAVIIKN--DKILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGID 55 (128)
T ss_pred cEEEEEEEEC--CEEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCc
Confidence 4578888874 5999998753 346799999999999999999999999999954
No 29
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.42 E-value=3.1e-13 Score=102.59 Aligned_cols=52 Identities=31% Similarity=0.514 Sum_probs=45.2
Q ss_pred ceEEEEEEeCCCC--EEEEEEEeCCCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 137 PTFGAILIDKSLT--QVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 137 p~~GaIi~n~~~~--kVLLVk~~~~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
-.+|+|+++.+.+ ++||+|+.. +.|.+|||+++.|||+.+||+||++||||=
T Consensus 3 ~~~g~vi~~~~~~~~~vLl~~~~~--~~w~~PgG~ve~gEs~~~aa~REl~EEtGl 56 (130)
T cd03428 3 RSAGAIIYRRLNNEIEYLLLQASY--GHWDFPKGHVEPGEDDLEAALRETEEETGI 56 (130)
T ss_pred eEEEEEEEEecCCCceEEEEEccC--CcCcCCcCCCCCCCCHHHHHHHHHHHHHCC
Confidence 3589999887633 689999853 889999999999999999999999999994
No 30
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.41 E-value=5.8e-13 Score=102.18 Aligned_cols=50 Identities=36% Similarity=0.476 Sum_probs=43.8
Q ss_pred eEEEEEEeCCCCEEEEEEEeCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhc
Q psy13064 138 TFGAILIDKSLTQVLLVQSFFA--RASWGFPKGKVNQDEPPMTCAIREVKIIFC 189 (192)
Q Consensus 138 ~~GaIi~n~~~~kVLLVk~~~~--~~~W~fPkGkie~gEs~~ecAiREv~EE~g 189 (192)
++.+++.++ +++||+++... .+.|.+|||+++.|||+.+||+||++||||
T Consensus 3 ~~~~~i~~~--~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtG 54 (137)
T cd03427 3 TTLCFIKDP--DKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETG 54 (137)
T ss_pred EEEEEEEEC--CEEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhC
Confidence 467777775 69999987643 678999999999999999999999999999
No 31
>PLN02325 nudix hydrolase
Probab=99.40 E-value=6.9e-13 Score=105.16 Aligned_cols=56 Identities=23% Similarity=0.237 Sum_probs=46.9
Q ss_pred cccccceEEEEEEeCCCCEEEEEEEeC--CCCcEEcCceecCCCCCHHHHHHHHHHHHhc
Q psy13064 132 YKQSVPTFGAILIDKSLTQVLLVQSFF--ARASWGFPKGKVNQDEPPMTCAIREVKIIFC 189 (192)
Q Consensus 132 Y~~~ip~~GaIi~n~~~~kVLLVk~~~--~~~~W~fPkGkie~gEs~~ecAiREv~EE~g 189 (192)
|.+...++++++++. ++|||+|+.. ..+.|++|||+++.|||+.+||+||++||||
T Consensus 5 ~~~p~~~v~~vi~~~--~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtG 62 (144)
T PLN02325 5 EPIPRVAVVVFLLKG--NSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETG 62 (144)
T ss_pred CCCCeEEEEEEEEcC--CEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHC
Confidence 445556677777774 5999998753 2478999999999999999999999999999
No 32
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.40 E-value=7.3e-13 Score=102.58 Aligned_cols=49 Identities=24% Similarity=0.382 Sum_probs=43.4
Q ss_pred eEEEEEEeCCCCEEEEEEEeCCCCcEEcCceecCCCCCHHHHHHHHHHHHhc
Q psy13064 138 TFGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVKIIFC 189 (192)
Q Consensus 138 ~~GaIi~n~~~~kVLLVk~~~~~~~W~fPkGkie~gEs~~ecAiREv~EE~g 189 (192)
+++||++++ ++|||+++. ..+.|.||||+++.|||+.+||+||++||||
T Consensus 2 ~~~~ii~~~--~~vLLv~~~-~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG 50 (131)
T cd04686 2 AVRAIILQG--DKILLLYTK-RYGDYKFPGGGVEKGEDHIEGLIRELQEETG 50 (131)
T ss_pred cEEEEEEEC--CEEEEEEEc-CCCcEECccccCCCCCCHHHHHHHHHHHHHC
Confidence 367888885 699999986 3468999999999999999999999999999
No 33
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.40 E-value=7.4e-13 Score=100.73 Aligned_cols=52 Identities=19% Similarity=0.369 Sum_probs=44.7
Q ss_pred eEEEEEEeCCCCEEEEEEEeC--CCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 138 TFGAILIDKSLTQVLLVQSFF--ARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 138 ~~GaIi~n~~~~kVLLVk~~~--~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
++++++++++ +++||+++.. .++.|.+|||+++.|||+.+||.||++||||=
T Consensus 3 av~~~i~~~~-~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl 56 (130)
T cd04681 3 AVGVLILNED-GELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGL 56 (130)
T ss_pred eEEEEEEcCC-CcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCC
Confidence 4677888865 6999998753 25789999999999999999999999999993
No 34
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.39 E-value=1e-12 Score=98.24 Aligned_cols=50 Identities=26% Similarity=0.430 Sum_probs=42.6
Q ss_pred EEEEEEeCCCCEEEEEEEeCCCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 139 FGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 139 ~GaIi~n~~~~kVLLVk~~~~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+.+++++.+ +++||+++. ..+.|.||||++++||++.+||.||++||||=
T Consensus 3 ~~~~v~~~~-~~vLl~~r~-~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl 52 (118)
T cd04690 3 AAALILVRD-GRVLLVRKR-GTDVFYLPGGKIEAGETPLQALIRELSEELGL 52 (118)
T ss_pred EEEEEEecC-CeEEEEEEC-CCCcEECCCCccCCCCCHHHHHHHHHHHHHCC
Confidence 445556655 599999875 56789999999999999999999999999993
No 35
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.39 E-value=8.8e-13 Score=101.36 Aligned_cols=53 Identities=21% Similarity=0.271 Sum_probs=45.8
Q ss_pred ceEEEEEEeCCCCEEEEEEEeC---CCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 137 PTFGAILIDKSLTQVLLVQSFF---ARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 137 p~~GaIi~n~~~~kVLLVk~~~---~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+++++++++++ +++||+++.+ .++.|.||||+++.||++.+||+||++||+|-
T Consensus 3 ~~v~v~~~~~~-~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl 58 (137)
T cd03424 3 DAVAVLPYDDD-GKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGY 58 (137)
T ss_pred CEEEEEEEcCC-CeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCC
Confidence 46888888876 7999997653 24589999999999999999999999999993
No 36
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.39 E-value=1e-12 Score=102.29 Aligned_cols=51 Identities=16% Similarity=0.192 Sum_probs=41.8
Q ss_pred eEEEEEEeCCCCEEEEEEEeCC----CCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 138 TFGAILIDKSLTQVLLVQSFFA----RASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 138 ~~GaIi~n~~~~kVLLVk~~~~----~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
++++|+.+ .++|||+|+... +|.|++|||+++.|||+.+||+||++||||-
T Consensus 6 ~~~~ii~~--~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl 60 (141)
T PRK15472 6 IVCPLIQN--DGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGE 60 (141)
T ss_pred EEEEEEec--CCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCC
Confidence 35555555 369999986432 3789999999999999999999999999993
No 37
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.38 E-value=7.9e-13 Score=99.38 Aligned_cols=53 Identities=21% Similarity=0.306 Sum_probs=45.1
Q ss_pred ceEEEEEEeCCCCEEEEEEEeCC----CCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 137 PTFGAILIDKSLTQVLLVQSFFA----RASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 137 p~~GaIi~n~~~~kVLLVk~~~~----~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+++++|+.+++ +++||+|+... ++.|+||+|+++.|||+.+||+||++||||-
T Consensus 2 ~~v~~vv~~~~-~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl 58 (129)
T cd04699 2 VAVAALIVKDV-GRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGL 58 (129)
T ss_pred ceEEEEEECCC-CcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCc
Confidence 45778887764 68999987532 5789999999999999999999999999983
No 38
>KOG0648|consensus
Probab=99.38 E-value=5.3e-13 Score=118.54 Aligned_cols=98 Identities=26% Similarity=0.393 Sum_probs=84.3
Q ss_pred hhhHHHHhhhccccccccceeeeccchhhhhHh--------hhh----hhhhhhhhhhccc-ccc-------eEEEEEEe
Q psy13064 86 IDTVLDDWRHYKQSVPTFGAILIDKSLTQVLLF--------LRQ----GLTVLDDWRHYKQ-SVP-------TFGAILID 145 (192)
Q Consensus 86 ~~~~~~~~~~y~~~vp~~~~i~~~~~~~~~~~v--------~~~----~~~~l~~~~~Y~~-~ip-------~~GaIi~n 145 (192)
.++++.+|+..++ ++||++++.+++++| .|| +|+|+..|..+.. ++| +.|+.++|
T Consensus 50 l~~Sl~~W~~~Gr-----~~iwl~l~~~~~~lV~~a~~~gf~~hHae~~~~~l~~Wl~e~~~~lP~~Ash~vgvg~~V~n 124 (295)
T KOG0648|consen 50 LRASLQKWYLQGR-----KGIWLKLPEELARLVEEAAKYGFDYHHAESLYVMLTSWLREAPSTLPANASHRVGVGAFVLN 124 (295)
T ss_pred HHHHHHHHHHccC-----cccceechHHHHhHHHHHHhcCcEEecccccceeeeeeeccccccCCCchhhheeeeeeEec
Confidence 4688899999776 789999999999987 566 8999999996543 444 78899999
Q ss_pred CCCCEEEEEEEeC----CCCcEEcCceecCCCCCHHHHHHHHHHHHhc
Q psy13064 146 KSLTQVLLVQSFF----ARASWGFPKGKVNQDEPPMTCAIREVKIIFC 189 (192)
Q Consensus 146 ~~~~kVLLVk~~~----~~~~W~fPkGkie~gEs~~ecAiREv~EE~g 189 (192)
.+ ++||+|+... ..|.|.+|.|.|++||++.+.|+|||+||||
T Consensus 125 ~~-~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetg 171 (295)
T KOG0648|consen 125 KK-KEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETG 171 (295)
T ss_pred CC-ceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhC
Confidence 88 7999998531 3689999999999999999999999999999
No 39
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.38 E-value=1.1e-12 Score=98.57 Aligned_cols=51 Identities=24% Similarity=0.397 Sum_probs=42.9
Q ss_pred eEEEEEEeCCCCEEEEEEEeC---CCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 138 TFGAILIDKSLTQVLLVQSFF---ARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 138 ~~GaIi~n~~~~kVLLVk~~~---~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
.+++++.++ ++|||+|+.. .++.|.||||+++.|||+.+||+||++||||-
T Consensus 2 ~v~~vi~~~--~~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl 55 (120)
T cd04683 2 AVYVLLRRD--DEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGV 55 (120)
T ss_pred cEEEEEEEC--CEEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCC
Confidence 356666664 6999998753 25789999999999999999999999999994
No 40
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.38 E-value=1.1e-12 Score=99.61 Aligned_cols=50 Identities=26% Similarity=0.404 Sum_probs=41.6
Q ss_pred EEEEEEeCCCCEEEEEEEeCC-----CCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 139 FGAILIDKSLTQVLLVQSFFA-----RASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 139 ~GaIi~n~~~~kVLLVk~~~~-----~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+++++.+ + +++||+++... .|.|.||||+++.|||+.+||+||++||||=
T Consensus 4 ~~~~~~~-~-g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl 58 (122)
T cd04682 4 ALALLIG-D-GRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGL 58 (122)
T ss_pred EEEEEEc-C-CEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCC
Confidence 4455544 4 79999987532 3799999999999999999999999999994
No 41
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.37 E-value=1.6e-12 Score=104.36 Aligned_cols=55 Identities=27% Similarity=0.448 Sum_probs=48.6
Q ss_pred ccceEEEEEEeCCCCEEEEEEEeCCCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 135 SVPTFGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 135 ~ip~~GaIi~n~~~~kVLLVk~~~~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
..++++++++|++ ++|||+|+...++.|++|+|+++.||++.+||.||++||||-
T Consensus 7 ~~~~v~~~i~~~~-g~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~ 61 (156)
T PRK00714 7 YRPNVGIILLNRQ-GQVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGL 61 (156)
T ss_pred CCCeEEEEEEecC-CEEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCC
Confidence 4567899999976 699999986445789999999999999999999999999994
No 42
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.37 E-value=1.1e-12 Score=101.07 Aligned_cols=52 Identities=25% Similarity=0.318 Sum_probs=42.6
Q ss_pred EEEEEEe--CCCCEEEEEEEeC-CCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 139 FGAILID--KSLTQVLLVQSFF-ARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 139 ~GaIi~n--~~~~kVLLVk~~~-~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+|+|++. +..++|||+++.. .++.|.+|||+++.|||+.+||+||++||||-
T Consensus 2 ~~~v~~~~~~~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl 56 (131)
T cd04695 2 VSGVLLRSLDKETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGI 56 (131)
T ss_pred ceEEEEEEcCCCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCC
Confidence 3455543 3457999998753 26789999999999999999999999999995
No 43
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.36 E-value=1.7e-12 Score=99.41 Aligned_cols=50 Identities=20% Similarity=0.221 Sum_probs=42.3
Q ss_pred EEEEEEeCCCCEEEEEEEeC-CCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 139 FGAILIDKSLTQVLLVQSFF-ARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 139 ~GaIi~n~~~~kVLLVk~~~-~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+++|+.++ +++||+++.. .++.|+||||+++.|||+.+||.||++||||-
T Consensus 3 v~~ii~~~--~~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl 53 (134)
T cd03675 3 VAAVVERD--GRFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGW 53 (134)
T ss_pred EEEEEEEC--CEEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCc
Confidence 56666553 5999998764 34689999999999999999999999999994
No 44
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.36 E-value=1.9e-12 Score=98.22 Aligned_cols=48 Identities=23% Similarity=0.275 Sum_probs=41.9
Q ss_pred EEEEEEeCCCCEEEEEEEeCCCCcEEcCceecCCCCCHHHHHHHHHHHHhc
Q psy13064 139 FGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVKIIFC 189 (192)
Q Consensus 139 ~GaIi~n~~~~kVLLVk~~~~~~~W~fPkGkie~gEs~~ecAiREv~EE~g 189 (192)
++||+.+ .+++||+++. .++.|.+|||+++.|||+.+||+||++||||
T Consensus 4 ~~~vi~~--~~~vLlv~~~-~~~~~~lPGG~ve~gEt~~~aa~REl~EEtG 51 (125)
T cd04689 4 ARAIVRA--GNKVLLARVI-GQPHYFLPGGHVEPGETAENALRRELQEELG 51 (125)
T ss_pred EEEEEEe--CCEEEEEEec-CCCCEECCCCcCCCCCCHHHHHHHHHHHHhC
Confidence 5666665 3699999985 4578999999999999999999999999998
No 45
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.35 E-value=1.8e-12 Score=97.03 Aligned_cols=48 Identities=29% Similarity=0.472 Sum_probs=40.6
Q ss_pred EEEEEEeCCCCEEEEEEEeCCCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 139 FGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 139 ~GaIi~n~~~~kVLLVk~~~~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+++|+ ..+ +++||+++. .+.|+||||++++|||+.+||.||++||||-
T Consensus 3 a~~i~-~~~-~~vLlv~r~--~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl 50 (112)
T cd04667 3 ATVIC-RRG-GRVLLVRKS--GSRWALPGGKIEPGETPLQAARRELQEETGL 50 (112)
T ss_pred eEEEE-ecC-CEEEEEEcC--CCcEeCCCCcCCCCCCHHHHHHHHHHHHhCC
Confidence 44444 433 699999985 4789999999999999999999999999994
No 46
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.34 E-value=2.4e-12 Score=98.24 Aligned_cols=52 Identities=21% Similarity=0.169 Sum_probs=44.1
Q ss_pred EEEEEEeC-CCCEEEEEEEeCC-CCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 139 FGAILIDK-SLTQVLLVQSFFA-RASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 139 ~GaIi~n~-~~~kVLLVk~~~~-~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+.+++++. ..+++||+|+... ++.|.+|||+++.|||+.+||+||++||+|=
T Consensus 4 ~~v~~~~~~~~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl 57 (129)
T cd04664 4 VLVVPYRLTGEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGL 57 (129)
T ss_pred EEEEEEEeCCCCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCC
Confidence 55666665 1479999998643 6899999999999999999999999999994
No 47
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.34 E-value=3e-12 Score=97.28 Aligned_cols=49 Identities=22% Similarity=0.264 Sum_probs=41.7
Q ss_pred EEEEEEeCCCCEEEEEEEeCCCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 139 FGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 139 ~GaIi~n~~~~kVLLVk~~~~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+.+|++++ ++|||+++. .++.|.+|||+++.||++.+||+||++||||-
T Consensus 4 v~~vi~~~--~~vLl~~~~-~~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl 52 (126)
T cd04688 4 AAAIIIHN--GKLLVQKNP-DETFYRPPGGGIEFGESSEEALIREFKEELGL 52 (126)
T ss_pred EEEEEEEC--CEEEEEEeC-CCCeEECCCccccCCCCHHHHHHHHHHHHhCC
Confidence 45566664 399999875 36789999999999999999999999999993
No 48
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.34 E-value=1.9e-12 Score=100.37 Aligned_cols=52 Identities=21% Similarity=0.192 Sum_probs=43.6
Q ss_pred eEEEEEEeCCCCEEEEEEEeC-CCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 138 TFGAILIDKSLTQVLLVQSFF-ARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 138 ~~GaIi~n~~~~kVLLVk~~~-~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
++.+.+.+++ +++||+++.. ..+.|++|||+++.|||+.+||+||++||||=
T Consensus 2 ~v~i~l~~~~-~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl 54 (131)
T cd03429 2 AVIVLVIDGG-DRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGI 54 (131)
T ss_pred eEEEEEEeCC-CEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCc
Confidence 4555566654 7999998753 26789999999999999999999999999993
No 49
>KOG2937|consensus
Probab=99.32 E-value=9.4e-14 Score=124.67 Aligned_cols=151 Identities=28% Similarity=0.411 Sum_probs=125.4
Q ss_pred cCCCCCCCCchHHHHhhhhhhcccCCcccccchhHHHHHHhhhhhhhhhcccccC-ccC-cccCHHHHHHHHHhhCCcch
Q psy13064 3 KQKDKPYTIRKDILDDLSSRFVINIPHEERGDVIRICFQMELAYWFYLDFYCTQD-ESL-FKAGLKEFFFQMFHHIPSLT 80 (192)
Q Consensus 3 ~~~~~~~~~~~~ilddl~~RFiiN~P~ee~~~~~rl~fqie~A~WfY~Df~~~~~-~~l-p~~~~~~F~~~lf~~~p~l~ 80 (192)
||.+...-|+-+|.|.+..|||+|-=.++...-.|+++.|+.+||||+|...+.. .+- +.++-+++-.+++.+|..|+
T Consensus 139 kql~~~e~Ie~nI~dq~~~~fIi~gvs~d~~f~~~v~~eis~ihW~~l~~l~~t~~~s~~k~~~~~dk~~~~~~~l~vlk 218 (348)
T KOG2937|consen 139 KQLQDNEGIETNIRDQLVRLFIINGVSEDTNFNPRVRKEISKIHWHYLDHLVPTDKKSGPKGVKSRDKNYMVCPFLRVLK 218 (348)
T ss_pred HHhccccCcccchhhceeeeeeeccceeeeecchhhhccccceeeeehhhhcccccccCCCccccchhhcccchHHHHHH
Confidence 5666677799999999999999999999999999999999999999999995543 333 45667778888888877777
Q ss_pred hhhhhhhhHHHHhhhccccccccceeeeccchhhhhHhhhhhhhhhhhhhhcccccceEEEEEEeCCCCEEEEEEEeC-C
Q psy13064 81 HFARKIDTVLDDWRHYKQSVPTFGAILIDKSLTQVLLFLRQGLTVLDDWRHYKQSVPTFGAILIDKSLTQVLLVQSFF-A 159 (192)
Q Consensus 81 ~~~~~~~~~~~~~~~y~~~vp~~~~i~~~~~~~~~~~v~~~~~~~l~~~~~Y~~~ip~~GaIi~n~~~~kVLLVk~~~-~ 159 (192)
.|....+..+...++++-++|| .|+++.+-..+.+..++.+. .
T Consensus 219 k~~~k~~~~vak~~e~~~~~~t------------------------------------l~~~~t~v~~d~~~~aqS~~~~ 262 (348)
T KOG2937|consen 219 KWILKADEVVAKFPEKKSTVPT------------------------------------LGAALTDVEMDHVVTAQSYFAK 262 (348)
T ss_pred HHHHhccchhhcCcccCccchh------------------------------------HHhhhhccccccceeecccccc
Confidence 7777777777777777777666 88888887777788888764 3
Q ss_pred CCcEEcCceecCCCCCHHHHHHHHHHHHhc
Q psy13064 160 RASWGFPKGKVNQDEPPMTCAIREVKIIFC 189 (192)
Q Consensus 160 ~~~W~fPkGkie~gEs~~ecAiREv~EE~g 189 (192)
+..|+||.|+++.||-+.++++|+-.||.|
T Consensus 263 ~e~~~~~~~k~sr~e~~r~~si~s~~~e~~ 292 (348)
T KOG2937|consen 263 PENWTFPKGKISRGEKPRDASIRSTFEEPG 292 (348)
T ss_pred cccccCcccccccCCccccchhhhcCCCcC
Confidence 567999999999999999999999988876
No 50
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.31 E-value=2.5e-12 Score=100.01 Aligned_cols=43 Identities=33% Similarity=0.394 Sum_probs=38.1
Q ss_pred CCEEEEEEEeCC-CCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 148 LTQVLLVQSFFA-RASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 148 ~~kVLLVk~~~~-~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
.+++||||+... .+.|+||||+++.|||+.+||+||++||||-
T Consensus 12 ~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl 55 (132)
T cd04661 12 DTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGN 55 (132)
T ss_pred CcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCC
Confidence 468999997542 4789999999999999999999999999995
No 51
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.30 E-value=5.5e-12 Score=96.16 Aligned_cols=50 Identities=24% Similarity=0.292 Sum_probs=41.8
Q ss_pred EEEEEEeCCCCEEEEEEEeC----CCCcEEcC-ceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 139 FGAILIDKSLTQVLLVQSFF----ARASWGFP-KGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 139 ~GaIi~n~~~~kVLLVk~~~----~~~~W~fP-kGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+.+++++++ ++|||+|+.. ..|.|++| ||+++.||++ +||+||++||||=
T Consensus 3 v~v~~~~~~-g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl 57 (127)
T cd04693 3 VHVCIFNSK-GELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGL 57 (127)
T ss_pred EEEEEEeCC-CeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCC
Confidence 566777765 6999988753 23789998 9999999999 9999999999993
No 52
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.29 E-value=6.9e-12 Score=99.30 Aligned_cols=53 Identities=28% Similarity=0.366 Sum_probs=44.0
Q ss_pred eEEEEEEeCCC--CEEEEEEE------eCCCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 138 TFGAILIDKSL--TQVLLVQS------FFARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 138 ~~GaIi~n~~~--~kVLLVk~------~~~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
++|+|+++.+. .+|||+++ ....+.|++|||+++.||++.+||+||++||||=
T Consensus 2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl 62 (126)
T cd04662 2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGF 62 (126)
T ss_pred eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCC
Confidence 48889887553 36999974 1245789999999999999999999999999994
No 53
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.28 E-value=9.9e-12 Score=95.09 Aligned_cols=53 Identities=26% Similarity=0.360 Sum_probs=42.8
Q ss_pred cceEEEEEEeCCCCEEEEEEEeCC---CCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 136 VPTFGAILIDKSLTQVLLVQSFFA---RASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 136 ip~~GaIi~n~~~~kVLLVk~~~~---~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+.++++|+. . .++|||+|+... +|.|+||||+++.||++.+||+||+.||+|-
T Consensus 4 ~~~~~~ii~-~-~~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl 59 (135)
T PRK10546 4 IDVVAAIIE-R-DGKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGI 59 (135)
T ss_pred EEEEEEEEe-c-CCEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCC
Confidence 444666663 3 369999987432 4789999999999999999999999999984
No 54
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.27 E-value=1.1e-11 Score=99.18 Aligned_cols=52 Identities=27% Similarity=0.376 Sum_probs=41.4
Q ss_pred EEEEEE-eCC-CCEEEEEEEeC----CCCcEEcCceecCCC-CCHHHHHHHHHHHHhcc
Q psy13064 139 FGAILI-DKS-LTQVLLVQSFF----ARASWGFPKGKVNQD-EPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 139 ~GaIi~-n~~-~~kVLLVk~~~----~~~~W~fPkGkie~g-Es~~ecAiREv~EE~g~ 190 (192)
+.+|++ +.+ .++|||+|+.. .++.|+||||+++.| ||+.+||+||++||||=
T Consensus 4 av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl 62 (157)
T cd03426 4 AVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGL 62 (157)
T ss_pred EEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCC
Confidence 334444 333 36899998753 257899999999999 99999999999999983
No 55
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.24 E-value=2.5e-11 Score=91.04 Aligned_cols=52 Identities=21% Similarity=0.418 Sum_probs=43.0
Q ss_pred ceEEEEEEeCCCCEEEEEEEeCC---CCcEEcCceecCCCCCHHHHHHHHHHHHhc
Q psy13064 137 PTFGAILIDKSLTQVLLVQSFFA---RASWGFPKGKVNQDEPPMTCAIREVKIIFC 189 (192)
Q Consensus 137 p~~GaIi~n~~~~kVLLVk~~~~---~~~W~fPkGkie~gEs~~ecAiREv~EE~g 189 (192)
..+.+|+.+.+ +++||+|+... +|.|+||+|+++.||++.+||.||+.||+|
T Consensus 5 ~~~~~ii~~~~-~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~g 59 (129)
T PRK10776 5 QIAVGIIRNPN-NEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVG 59 (129)
T ss_pred EEEEEEEECCC-CEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHC
Confidence 34556666654 68999987432 478999999999999999999999999998
No 56
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.23 E-value=1.2e-11 Score=102.62 Aligned_cols=55 Identities=22% Similarity=0.213 Sum_probs=46.2
Q ss_pred ceEEEEEEeCCCCEEEEEEEeC--------CCCcEEcCceecCCCCCHHHHHHHHHHHHhccC
Q psy13064 137 PTFGAILIDKSLTQVLLVQSFF--------ARASWGFPKGKVNQDEPPMTCAIREVKIIFCQH 191 (192)
Q Consensus 137 p~~GaIi~n~~~~kVLLVk~~~--------~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~~ 191 (192)
+++++++++.+.++|||+++++ +...|+||+|+++.||++.+||+||++||||-.
T Consensus 45 ~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~ 107 (185)
T TIGR00052 45 NAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQ 107 (185)
T ss_pred CeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccce
Confidence 4566777777668999999864 235799999999999999999999999999953
No 57
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.22 E-value=3e-11 Score=99.26 Aligned_cols=50 Identities=30% Similarity=0.446 Sum_probs=41.3
Q ss_pred EEEEEEeCCCCEEEEEEEeC---CCCcEEcCceecCCCCCHHHHHHHHHHHHhc
Q psy13064 139 FGAILIDKSLTQVLLVQSFF---ARASWGFPKGKVNQDEPPMTCAIREVKIIFC 189 (192)
Q Consensus 139 ~GaIi~n~~~~kVLLVk~~~---~~~~W~fPkGkie~gEs~~ecAiREv~EE~g 189 (192)
++++.++ ..++|||+++++ +...|+||+|.+++||++.+||+||++||||
T Consensus 50 v~v~~~~-~~~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG 102 (185)
T PRK11762 50 VMIVPIL-DDDTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVG 102 (185)
T ss_pred EEEEEEe-CCCEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHC
Confidence 4444454 357899999874 2457999999999999999999999999999
No 58
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.21 E-value=4.6e-11 Score=93.06 Aligned_cols=55 Identities=18% Similarity=0.202 Sum_probs=44.0
Q ss_pred cccceEEEEEEeCCCCEEEEEEEeC--CCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 134 QSVPTFGAILIDKSLTQVLLVQSFF--ARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 134 ~~ip~~GaIi~n~~~~kVLLVk~~~--~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+++|++++|+...+ ++||+++.. .++.|+||+|+++.|||+.+||.||+.||+|-
T Consensus 2 ~p~~~av~vl~~~~--~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~ 58 (118)
T cd04674 2 NPLPVVVALLPVDD--GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGV 58 (118)
T ss_pred CCcEEEEEEEEECC--CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCC
Confidence 45677888876654 466665433 35789999999999999999999999999994
No 59
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.21 E-value=3e-11 Score=92.61 Aligned_cols=50 Identities=14% Similarity=0.180 Sum_probs=42.4
Q ss_pred EEEEEEeCCCCEEEEEEEeC----CCCcEEc-CceecCCCCCHHHHHHHHHHHHhc
Q psy13064 139 FGAILIDKSLTQVLLVQSFF----ARASWGF-PKGKVNQDEPPMTCAIREVKIIFC 189 (192)
Q Consensus 139 ~GaIi~n~~~~kVLLVk~~~----~~~~W~f-PkGkie~gEs~~ecAiREv~EE~g 189 (192)
+.++++|.+ +++||+++.. ..|.|++ |||+++.||++.+||+||++||||
T Consensus 3 ~~v~i~~~~-~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtG 57 (126)
T cd04697 3 TYIFVFNSE-GKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELG 57 (126)
T ss_pred EEEEEEcCC-CeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHC
Confidence 567888876 6999988652 2467999 689999999999999999999999
No 60
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.20 E-value=4e-11 Score=87.19 Aligned_cols=52 Identities=33% Similarity=0.475 Sum_probs=44.8
Q ss_pred eEEEEEEeCCCCEEEEEEEeCC-CCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 138 TFGAILIDKSLTQVLLVQSFFA-RASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 138 ~~GaIi~n~~~~kVLLVk~~~~-~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
++++++.+.+ +++||+++... ++.|.||+|+++.||++.+||+||+.||+|-
T Consensus 2 ~~~~i~~~~~-~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl 54 (123)
T cd02883 2 AVGAVILDED-GRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGL 54 (123)
T ss_pred ceEEEEECCC-CCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCc
Confidence 4678888875 68999987532 5899999999999999999999999999984
No 61
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.19 E-value=6.3e-11 Score=89.31 Aligned_cols=52 Identities=17% Similarity=0.259 Sum_probs=42.5
Q ss_pred eEEEEEEeCCCCEEEEEEEeCC---CCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 138 TFGAILIDKSLTQVLLVQSFFA---RASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 138 ~~GaIi~n~~~~kVLLVk~~~~---~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
++++|+.+++ +++||+++... +|.|+||+|+++.||++.+||+||+.||+|-
T Consensus 6 ~~~~ii~~~~-~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~ 60 (128)
T TIGR00586 6 IAVGIIRNEN-GEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGI 60 (128)
T ss_pred EEEEEEECCC-CEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCC
Confidence 3556665654 58999887432 5789999999999999999999999999984
No 62
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.18 E-value=6.4e-11 Score=87.35 Aligned_cols=53 Identities=30% Similarity=0.505 Sum_probs=44.4
Q ss_pred ceEEEEEEeCCCCEEEEEEEeC---CCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 137 PTFGAILIDKSLTQVLLVQSFF---ARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 137 p~~GaIi~n~~~~kVLLVk~~~---~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
.++.+++.|++ +++||+++.. .++.|.||+|+++.||++.+||.||+.||+|-
T Consensus 2 ~~~~~~i~~~~-~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~ 57 (124)
T cd03425 2 EVVAAIIIDDD-GRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGI 57 (124)
T ss_pred eEEEEEEECCC-CEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCc
Confidence 34677777764 6999998743 25789999999999999999999999999983
No 63
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.18 E-value=7.2e-11 Score=92.72 Aligned_cols=52 Identities=27% Similarity=0.321 Sum_probs=45.2
Q ss_pred eEEEEEEeCCCCEEEEEEEeC----CCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 138 TFGAILIDKSLTQVLLVQSFF----ARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 138 ~~GaIi~n~~~~kVLLVk~~~----~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
++++++++.+ ++|||++... .++.|.+|+|+++.||++.+||.||+.||||-
T Consensus 2 ~~~~~i~~~~-g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~ 57 (133)
T cd04685 2 AARVVLLDPD-DRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGI 57 (133)
T ss_pred eEEEEEEcCC-CeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCC
Confidence 4788999876 6999998753 24689999999999999999999999999994
No 64
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.17 E-value=6.8e-11 Score=99.49 Aligned_cols=54 Identities=15% Similarity=0.038 Sum_probs=45.6
Q ss_pred ceEEEEEEeCCCCEEEEEEEeCCC--------CcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 137 PTFGAILIDKSLTQVLLVQSFFAR--------ASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 137 p~~GaIi~n~~~~kVLLVk~~~~~--------~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+++++|.+++..++||||++++.+ -.|++|+|++|+||++.+||.||+.||||=
T Consensus 50 ~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy 111 (202)
T PRK10729 50 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGL 111 (202)
T ss_pred CeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCc
Confidence 456677777666799999988632 369999999999999999999999999994
No 65
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.17 E-value=6.4e-11 Score=106.39 Aligned_cols=56 Identities=27% Similarity=0.483 Sum_probs=45.8
Q ss_pred cccccceEEEEEEeCCCCEEEEEEEeC--CCCcEEcCceecCCCCCHHHHHHHHHHHHhc
Q psy13064 132 YKQSVPTFGAILIDKSLTQVLLVQSFF--ARASWGFPKGKVNQDEPPMTCAIREVKIIFC 189 (192)
Q Consensus 132 Y~~~ip~~GaIi~n~~~~kVLLVk~~~--~~~~W~fPkGkie~gEs~~ecAiREv~EE~g 189 (192)
|.....++++|++++ ++|||+++.. .+|.|.+|||+++.|||+.+||+||++||||
T Consensus 199 ~~~~~vtv~avv~~~--g~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETG 256 (340)
T PRK05379 199 YPPTFVTVDAVVVQS--GHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETG 256 (340)
T ss_pred CCCcceEEEEEEEEC--CEEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHC
Confidence 333344677777764 5999999753 3578999999999999999999999999998
No 66
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.16 E-value=8.7e-11 Score=93.62 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=42.7
Q ss_pred EEEEEEeCCCCEEEEEEEeC----CCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 139 FGAILIDKSLTQVLLVQSFF----ARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 139 ~GaIi~n~~~~kVLLVk~~~----~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+.+|++|.+ ++|||+|+.. .++.|++|+|+++.||++.+||+||++||+|-
T Consensus 4 v~viv~~~~-~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi 58 (143)
T cd04694 4 VAVLLQSSD-QKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGL 58 (143)
T ss_pred EEEEEEcCC-CEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCC
Confidence 445556654 7999998853 25689999999999999999999999999984
No 67
>KOG2839|consensus
Probab=99.16 E-value=5.8e-11 Score=96.04 Aligned_cols=54 Identities=30% Similarity=0.253 Sum_probs=48.6
Q ss_pred cceEEEEEEeCCCC--EEEEEEEeCCCCcEEcCceecCCCCCHHHHHHHHHHHHhc
Q psy13064 136 VPTFGAILIDKSLT--QVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVKIIFC 189 (192)
Q Consensus 136 ip~~GaIi~n~~~~--kVLLVk~~~~~~~W~fPkGkie~gEs~~ecAiREv~EE~g 189 (192)
+.++|+|++..+.. +||||++.+.+..|.||||++++||+..+||+||+.||.|
T Consensus 9 r~vagCi~~r~~~~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAG 64 (145)
T KOG2839|consen 9 RLVAGCICYRSDKEKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAG 64 (145)
T ss_pred EEEEEeeeeeecCcceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhC
Confidence 34699999987766 9999998766789999999999999999999999999988
No 68
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.16 E-value=6.7e-11 Score=91.79 Aligned_cols=48 Identities=29% Similarity=0.300 Sum_probs=40.5
Q ss_pred EEEEEEeCCCCEEEEEEEeCCCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 139 FGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 139 ~GaIi~n~~~~kVLLVk~~~~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+.+|+.++ +++||+++. ++.|.||||+++.||++.+||.||++||+|-
T Consensus 3 v~vi~~~~--~~vLl~~~~--~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~ 50 (118)
T cd04665 3 VLVICFYD--DGLLLVRHK--DRGWEFPGGHVEPGETIEEAARREVWEETGA 50 (118)
T ss_pred EEEEEEEC--CEEEEEEeC--CCEEECCccccCCCCCHHHHHHHHHHHHHCC
Confidence 34444443 699999984 5689999999999999999999999999985
No 69
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.16 E-value=6.2e-11 Score=95.38 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=43.9
Q ss_pred ceEEEEEEeCCCCEEEEEEEeC----CCCcEEcC-ceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 137 PTFGAILIDKSLTQVLLVQSFF----ARASWGFP-KGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 137 p~~GaIi~n~~~~kVLLVk~~~----~~~~W~fP-kGkie~gEs~~ecAiREv~EE~g~ 190 (192)
.+++++++|++ ++|||.|+.. .+|.|++| +|+++.|||+.+||+||++||||=
T Consensus 31 ~~v~v~i~~~~-~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl 88 (165)
T cd02885 31 RAFSVFLFNSK-GRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGI 88 (165)
T ss_pred eEEEEEEEcCC-CcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCC
Confidence 45777788865 6899998642 24779986 899999999999999999999994
No 70
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.15 E-value=5.8e-11 Score=103.35 Aligned_cols=95 Identities=16% Similarity=0.092 Sum_probs=65.7
Q ss_pred hHHHHhhhccccccccceeeeccchhhhhHhhhhhhhhhhhhhhcccccceEEEEEEeCCCCEEEEEEEeC-CCCcEEcC
Q psy13064 88 TVLDDWRHYKQSVPTFGAILIDKSLTQVLLFLRQGLTVLDDWRHYKQSVPTFGAILIDKSLTQVLLVQSFF-ARASWGFP 166 (192)
Q Consensus 88 ~~~~~~~~y~~~vp~~~~i~~~~~~~~~~~v~~~~~~~l~~~~~Y~~~ip~~GaIi~n~~~~kVLLVk~~~-~~~~W~fP 166 (192)
..+.+|.+-.+-.|.||+-...........-. --.+..|.+.-|++.+++.+. +++||+++.. ..+.|++|
T Consensus 90 ~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~C~------~c~~~~yp~~~paViv~V~~~--~~iLL~rr~~~~~g~wslP 161 (256)
T PRK00241 90 VQLAEFYRSHRFCGYCGHPMHPSKTEWAMLCP------HCRERYYPRIAPCIIVAVRRG--DEILLARHPRHRNGVYTVL 161 (256)
T ss_pred HHHHHHhhcCccccccCCCCeecCCceeEECC------CCCCEECCCCCCEEEEEEEeC--CEEEEEEccCCCCCcEeCc
Confidence 34667887777778877643221111110000 022457887778766555443 6999998753 45789999
Q ss_pred ceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 167 KGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 167 kGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+|+++.|||+.+||+||++||||=
T Consensus 162 gG~vE~GEs~eeAa~REv~EEtGl 185 (256)
T PRK00241 162 AGFVEVGETLEQCVAREVMEESGI 185 (256)
T ss_pred ccCCCCCCCHHHHhhhhhhhccCc
Confidence 999999999999999999999993
No 71
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.11 E-value=1.6e-10 Score=90.49 Aligned_cols=52 Identities=25% Similarity=0.344 Sum_probs=41.8
Q ss_pred EEEEEEeCC--CCEEEEEEEeC----CCCcEEc-CceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 139 FGAILIDKS--LTQVLLVQSFF----ARASWGF-PKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 139 ~GaIi~n~~--~~kVLLVk~~~----~~~~W~f-PkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+-+.++|.+ .+++|+.++.. ..|.|.+ |||+++.|||+.+||+||++||||-
T Consensus 5 v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl 63 (144)
T cd04692 5 FHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGL 63 (144)
T ss_pred EEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCC
Confidence 446667764 26888887643 2468999 5999999999999999999999994
No 72
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.11 E-value=1.7e-10 Score=94.15 Aligned_cols=40 Identities=38% Similarity=0.391 Sum_probs=36.4
Q ss_pred CEEEEEEEeCCCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 149 TQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 149 ~kVLLVk~~~~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+++||++++ ...|.||+|+++.|||+.+||+||++||||-
T Consensus 35 ~~~LL~~~~--~~~~elPgG~vE~gEt~~eaA~REl~EETG~ 74 (156)
T TIGR02705 35 DQWLLTEHK--RRGLEFPGGKVEPGETSKEAAIREVMEETGA 74 (156)
T ss_pred CEEEEEEEc--CCcEECCceecCCCCCHHHHHHHHHHHHhCc
Confidence 489999886 3469999999999999999999999999995
No 73
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.10 E-value=2.1e-10 Score=84.02 Aligned_cols=42 Identities=31% Similarity=0.322 Sum_probs=36.2
Q ss_pred CEEEEEEEeCCCCcEEcCceecCCCCCHHH-HHHHHHHHHhcc
Q psy13064 149 TQVLLVQSFFARASWGFPKGKVNQDEPPMT-CAIREVKIIFCQ 190 (192)
Q Consensus 149 ~kVLLVk~~~~~~~W~fPkGkie~gEs~~e-cAiREv~EE~g~ 190 (192)
.++|++++....+.|.||||+++.||++.+ ||+||++||||-
T Consensus 24 ~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl 66 (161)
T COG0494 24 GEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGL 66 (161)
T ss_pred CEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCC
Confidence 688888875333489999999999999998 999999999994
No 74
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.10 E-value=1.8e-10 Score=94.69 Aligned_cols=53 Identities=15% Similarity=0.073 Sum_probs=41.9
Q ss_pred ceEEEEEEeCCCCEEEEEEEeCC----CCcE-EcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 137 PTFGAILIDKSLTQVLLVQSFFA----RASW-GFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 137 p~~GaIi~n~~~~kVLLVk~~~~----~~~W-~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+++.++++|++ +++||.++... ++.| .+|||++++|||+.+||+||++||||=
T Consensus 38 ~~~~v~v~~~~-g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl 95 (180)
T PRK15393 38 RATYIVVHDGM-GKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGI 95 (180)
T ss_pred EEEEEEEECCC-CeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCC
Confidence 34666677764 79999887532 2334 689999999999999999999999993
No 75
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.03 E-value=4.6e-10 Score=92.20 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=42.3
Q ss_pred ceEEEEEEeCCCCEEEEEEEeC----CCCcEEcC-ceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 137 PTFGAILIDKSLTQVLLVQSFF----ARASWGFP-KGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 137 p~~GaIi~n~~~~kVLLVk~~~----~~~~W~fP-kGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+++++++++++ ++|||+|+.. -.|.|.+| ||+++.|||+.+||+||+.||||=
T Consensus 35 ~av~v~i~~~~-g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl 92 (184)
T PRK03759 35 LAFSCYLFDAD-GRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGV 92 (184)
T ss_pred eEEEEEEEcCC-CeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCC
Confidence 45777788864 7999998631 13567665 799999999999999999999983
No 76
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.00 E-value=9.9e-10 Score=86.82 Aligned_cols=50 Identities=24% Similarity=0.272 Sum_probs=39.9
Q ss_pred EEEEEEeCCC-CEEEEEEEeCCCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 139 FGAILIDKSL-TQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 139 ~GaIi~n~~~-~kVLLVk~~~~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+.|++.+++. .++|+.+.. .+.|.+|||+++.|||+.+||+||++||||-
T Consensus 3 ~~~~~~~~~~~~~ll~~r~~--~~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl 53 (126)
T cd04663 3 CPAVLRRNGEVLELLVFEHP--LAGFQIVKGTVEPGETPEAAALRELQEESGL 53 (126)
T ss_pred EEEEEEeCCceEEEEEEEcC--CCcEECCCccCCCCCCHHHHHHHHHHHHHCC
Confidence 4566666542 367777653 3569999999999999999999999999994
No 77
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=98.97 E-value=1.4e-09 Score=90.71 Aligned_cols=53 Identities=23% Similarity=0.227 Sum_probs=40.2
Q ss_pred eEEEEEEe-CCCCEEEEEEEe----CCCCcEEcCceecCCC-CCHHHHHHHHHHHHhcc
Q psy13064 138 TFGAILID-KSLTQVLLVQSF----FARASWGFPKGKVNQD-EPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 138 ~~GaIi~n-~~~~kVLLVk~~----~~~~~W~fPkGkie~g-Es~~ecAiREv~EE~g~ 190 (192)
++++|.+. ...+++|++|+. ...|.|+||||++|.| |++.+||+||++||||=
T Consensus 32 aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl 90 (190)
T PRK10707 32 AAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAI 90 (190)
T ss_pred eEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCC
Confidence 45555454 334588888843 1357899999999985 67999999999999993
No 78
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=98.95 E-value=1.9e-09 Score=90.15 Aligned_cols=53 Identities=17% Similarity=0.170 Sum_probs=44.1
Q ss_pred ceEEEEEEeCCCCEEEEEEEeCCC---------CcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 137 PTFGAILIDKSLTQVLLVQSFFAR---------ASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 137 p~~GaIi~n~~~~kVLLVk~~~~~---------~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+++++++++++.++++||++++.+ -.|++|+|.++.| +|.+||.||++||||=
T Consensus 46 ~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy 107 (191)
T PRK15009 46 NGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGY 107 (191)
T ss_pred CEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCC
Confidence 467777788766899999987632 2599999999976 6999999999999993
No 79
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=98.93 E-value=1.8e-09 Score=86.63 Aligned_cols=51 Identities=20% Similarity=0.306 Sum_probs=41.4
Q ss_pred ceEEEEEEeCCCCEEEEEEEeCC----CCcEEcC-ceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 137 PTFGAILIDKSLTQVLLVQSFFA----RASWGFP-KGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 137 p~~GaIi~n~~~~kVLLVk~~~~----~~~W~fP-kGkie~gEs~~ecAiREv~EE~g~ 190 (192)
.+++++++|.+ ++|||.|+... .|.|++| +|+++.|| .+||+||++||||-
T Consensus 28 ~~v~v~v~~~~-g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl 83 (158)
T TIGR02150 28 RAFSVFLFNEE-GQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGI 83 (158)
T ss_pred EEEEEEEEcCC-CeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCC
Confidence 35777888765 79999986432 4789987 79999999 49999999999984
No 80
>PRK08999 hypothetical protein; Provisional
Probab=98.88 E-value=4.8e-09 Score=91.67 Aligned_cols=53 Identities=23% Similarity=0.359 Sum_probs=43.2
Q ss_pred cceEEEEEEeCCCCEEEEEEEeC---CCCcEEcCceecCCCCCHHHHHHHHHHHHhc
Q psy13064 136 VPTFGAILIDKSLTQVLLVQSFF---ARASWGFPKGKVNQDEPPMTCAIREVKIIFC 189 (192)
Q Consensus 136 ip~~GaIi~n~~~~kVLLVk~~~---~~~~W~fPkGkie~gEs~~ecAiREv~EE~g 189 (192)
+..+.+++.+.+ +++||+|+.. .+|.|+||+|+++.||++.+||+||++||+|
T Consensus 5 ~~~~~~vi~~~~-~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~G 60 (312)
T PRK08999 5 IHVAAGVIRDAD-GRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELG 60 (312)
T ss_pred eEEEEEEEECCC-CeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhC
Confidence 334556666653 6899998743 2578999999999999999999999999998
No 81
>PLN03143 nudix hydrolase; Provisional
Probab=98.82 E-value=7.5e-09 Score=92.17 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=40.9
Q ss_pred eEEEEEE-eCC-CCEEEEEEEeC---CCCcEEcCceecCCC-CCHHHHHHHHHHHHhcc
Q psy13064 138 TFGAILI-DKS-LTQVLLVQSFF---ARASWGFPKGKVNQD-EPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 138 ~~GaIi~-n~~-~~kVLLVk~~~---~~~~W~fPkGkie~g-Es~~ecAiREv~EE~g~ 190 (192)
.++++++ +.+ ..+++||++++ ++..|+||+|++|.+ |++.+||.||++||||=
T Consensus 130 aVaVL~~l~~~ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~ 188 (291)
T PLN03143 130 AVAVLILLESEGETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGI 188 (291)
T ss_pred eEEEEEEEeCCCCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCC
Confidence 4555544 332 23499999876 345799999999975 89999999999999994
No 82
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=98.74 E-value=1.8e-08 Score=84.47 Aligned_cols=50 Identities=20% Similarity=0.243 Sum_probs=40.4
Q ss_pred EEEEEEeCC--CCEEEEEEEeCCCCcEEcCceecCCCCCHHHHHHHHHHHHhc
Q psy13064 139 FGAILIDKS--LTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVKIIFC 189 (192)
Q Consensus 139 ~GaIi~n~~--~~kVLLVk~~~~~~~W~fPkGkie~gEs~~ecAiREv~EE~g 189 (192)
.++|+.+.. .-+||++++. ..+.|.||||+++.||++.+||+||+.||||
T Consensus 37 ~~~i~~~~~~~~l~vLl~~r~-~~g~walPGG~v~~~E~~~~aa~Rel~EEt~ 88 (186)
T cd03670 37 DGSIHPKSGKPILQFVAIKRP-DSGEWAIPGGMVDPGEKISATLKREFGEEAL 88 (186)
T ss_pred CEEEEecCCCCeeEEEEEEeC-CCCcCcCCeeeccCCCCHHHHHHHHHHHHHc
Confidence 344554432 3378888874 5689999999999999999999999999995
No 83
>KOG3084|consensus
Probab=98.74 E-value=1.4e-08 Score=91.34 Aligned_cols=61 Identities=20% Similarity=0.129 Sum_probs=53.1
Q ss_pred hhcccccceEEEEEEeCCCCEEEEEEEeC-CCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 130 RHYKQSVPTFGAILIDKSLTQVLLVQSFF-ARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 130 ~~Y~~~ip~~GaIi~n~~~~kVLLVk~~~-~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
..|.+.=|++-..+++.++.++||.|..+ .+|.|+.|.|-+|+|||.++||+||++||+|-
T Consensus 181 ~~yPr~dPvVIm~li~~d~~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi 242 (345)
T KOG3084|consen 181 VIYPRTDPVVIMLLIDHDGKHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGI 242 (345)
T ss_pred eeccCCCCeEEEEEEcCCCCEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCc
Confidence 36788888887788888888999998643 56799999999999999999999999999994
No 84
>PLN02709 nudix hydrolase
Probab=98.73 E-value=4.2e-08 Score=84.49 Aligned_cols=42 Identities=19% Similarity=0.304 Sum_probs=36.1
Q ss_pred CEEEEEEEeC----CCCcEEcCceecCCCC-CHHHHHHHHHHHHhcc
Q psy13064 149 TQVLLVQSFF----ARASWGFPKGKVNQDE-PPMTCAIREVKIIFCQ 190 (192)
Q Consensus 149 ~kVLLVk~~~----~~~~W~fPkGkie~gE-s~~ecAiREv~EE~g~ 190 (192)
.++||+++.. ..|.|+||||+++.|| ++.+||+||+.||+|=
T Consensus 51 ~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl 97 (222)
T PLN02709 51 LRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGL 97 (222)
T ss_pred eEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCC
Confidence 4899988643 4689999999999975 6899999999999984
No 85
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=98.69 E-value=3.2e-08 Score=80.49 Aligned_cols=48 Identities=10% Similarity=0.052 Sum_probs=37.9
Q ss_pred EEeCC-CCEEEEEEEeC----CCCcE-EcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 143 LIDKS-LTQVLLVQSFF----ARASW-GFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 143 i~n~~-~~kVLLVk~~~----~~~~W-~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
+.|.+ .+++++-|+.. ..|.| .+|+|+++.|||+.+||+||++||||=
T Consensus 41 ~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl 94 (180)
T cd03676 41 VRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGL 94 (180)
T ss_pred EEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCC
Confidence 33543 35777777643 25789 599999999999999999999999993
No 86
>KOG3041|consensus
Probab=98.34 E-value=1.1e-06 Score=75.02 Aligned_cols=55 Identities=22% Similarity=0.243 Sum_probs=42.4
Q ss_pred cceEEEEEEeCC--CCEEEEEEEeCC---CCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 136 VPTFGAILIDKS--LTQVLLVQSFFA---RASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 136 ip~~GaIi~n~~--~~kVLLVk~~~~---~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
.++++++.+-+. ...++|+++++. +-.-+||.|-|+.||++..||+||++||||=
T Consensus 73 ~dgVaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy 132 (225)
T KOG3041|consen 73 ADGVAILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGY 132 (225)
T ss_pred CCeEEEEEEEecCCcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCc
Confidence 345555544333 347888988762 3368999999999999999999999999983
No 87
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=98.15 E-value=3.5e-06 Score=67.91 Aligned_cols=53 Identities=28% Similarity=0.387 Sum_probs=42.9
Q ss_pred eEEEEEEeCCC--CEEEEEEEe------CCCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 138 TFGAILIDKSL--TQVLLVQSF------FARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 138 ~~GaIi~n~~~--~kVLLVk~~------~~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
.+|++++.... -.||||+-- +..|.|++|||-...||++..+|.||..||||-
T Consensus 5 SAGvLlYR~~aG~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi 65 (161)
T COG4119 5 SAGVLLYRARAGVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGI 65 (161)
T ss_pred cceeEEEEecCCCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhce
Confidence 37888877543 367888631 245789999999999999999999999999984
No 88
>PLN02791 Nudix hydrolase homolog
Probab=98.06 E-value=9.2e-06 Score=80.66 Aligned_cols=51 Identities=16% Similarity=0.263 Sum_probs=42.9
Q ss_pred EEEEEEeCCCCEEEEEEEeC----CCCcEEc-CceecCCCCCHHHHHHHHHHHHhc
Q psy13064 139 FGAILIDKSLTQVLLVQSFF----ARASWGF-PKGKVNQDEPPMTCAIREVKIIFC 189 (192)
Q Consensus 139 ~GaIi~n~~~~kVLLVk~~~----~~~~W~f-PkGkie~gEs~~ecAiREv~EE~g 189 (192)
+-+.++|.+.+++||.|+.. ..|.|.+ |+|++..||+..+||+||+.||+|
T Consensus 35 vhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELG 90 (770)
T PLN02791 35 VHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELG 90 (770)
T ss_pred EEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhC
Confidence 55677786557888887743 2579999 799999999999999999999999
No 89
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=98.03 E-value=6.7e-06 Score=73.11 Aligned_cols=59 Identities=19% Similarity=0.154 Sum_probs=45.8
Q ss_pred hhcccccceEEEEEEeCCCCEEEEEEEeC-CCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 130 RHYKQSVPTFGAILIDKSLTQVLLVQSFF-ARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 130 ~~Y~~~ip~~GaIi~n~~~~kVLLVk~~~-~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
..|.++-|++=+++.+. +++||.++.+ ..+.++.-.|-|+.|||.++|..|||+||+|=
T Consensus 138 ~~fPR~dP~vIv~v~~~--~~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi 197 (279)
T COG2816 138 EHFPRIDPCVIVAVIRG--DEILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGI 197 (279)
T ss_pred ccCCCCCCeEEEEEecC--CceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCe
Confidence 35777777654444443 4577775432 47899999999999999999999999999984
No 90
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=97.83 E-value=4.3e-05 Score=66.75 Aligned_cols=52 Identities=19% Similarity=0.242 Sum_probs=38.5
Q ss_pred eEEEEEEeCCCCEEEEEEEeCC----CCcE-----EcCceecCCCC--C-----------HHHHHHHHHHHHhcc
Q psy13064 138 TFGAILIDKSLTQVLLVQSFFA----RASW-----GFPKGKVNQDE--P-----------PMTCAIREVKIIFCQ 190 (192)
Q Consensus 138 ~~GaIi~n~~~~kVLLVk~~~~----~~~W-----~fPkGkie~gE--s-----------~~ecAiREv~EE~g~ 190 (192)
++.++|+|.+ +++||.|+... .|.| +.|+|..+.|| + ..+||+||++||+|-
T Consensus 58 a~~v~i~n~~-g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI 131 (247)
T PLN02552 58 AFSVFLFNSK-YELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGI 131 (247)
T ss_pred EEEEEEEcCC-CeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCC
Confidence 4667778875 68998887532 4689 66667666654 1 679999999999994
No 91
>KOG3069|consensus
Probab=97.79 E-value=5.5e-05 Score=65.98 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=34.8
Q ss_pred CEEEEEEEeC----CCCcEEcCceecCCCC-CHHHHHHHHHHHHhc
Q psy13064 149 TQVLLVQSFF----ARASWGFPKGKVNQDE-PPMTCAIREVKIIFC 189 (192)
Q Consensus 149 ~kVLLVk~~~----~~~~W~fPkGkie~gE-s~~ecAiREv~EE~g 189 (192)
-+|||.|+.+ .+|.-.||||+++..+ |...||.||.+||+|
T Consensus 58 l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIG 103 (246)
T KOG3069|consen 58 LSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIG 103 (246)
T ss_pred eEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhC
Confidence 4788888653 4678999999999986 677899999999999
No 92
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=97.54 E-value=0.00031 Score=51.58 Aligned_cols=49 Identities=14% Similarity=0.178 Sum_probs=38.1
Q ss_pred EEEEEEeCCCCEEEEEEEeCC---CCcEEcCceecCCCCCHHHHHHHHHHHHhc
Q psy13064 139 FGAILIDKSLTQVLLVQSFFA---RASWGFPKGKVNQDEPPMTCAIREVKIIFC 189 (192)
Q Consensus 139 ~GaIi~n~~~~kVLLVk~~~~---~~~W~fPkGkie~gEs~~ecAiREv~EE~g 189 (192)
+.+|+ .. .+++||.|+-.. +|.|+||+|+++.+|+..++..||..||.+
T Consensus 6 ~~~ii-~~-~~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~ 57 (118)
T cd03431 6 AVVVI-RN-DGRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALR 57 (118)
T ss_pred EEEEE-ec-CCeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhC
Confidence 44444 33 368999987321 579999999999999999999999988864
No 93
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=96.87 E-value=0.0035 Score=53.08 Aligned_cols=62 Identities=16% Similarity=0.304 Sum_probs=42.0
Q ss_pred hhhhhcccccceEEEEEEeCC-CCEEEEEEEeCCCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 127 DDWRHYKQSVPTFGAILIDKS-LTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 127 ~~~~~Y~~~ip~~GaIi~n~~-~~kVLLVk~~~~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
..+.+.--+.-+.|++++... ...|||.|. ....|.+|||++..||++.++..|.+.+-+|-
T Consensus 35 ~~y~~~GmRrsVe~Vllvh~h~~PHvLLLq~--~~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~ 97 (188)
T PF13869_consen 35 ENYEKEGMRRSVEGVLLVHEHGHPHVLLLQI--GNTFFKLPGGRLRPGEDEIEGLKRKLTEKLSP 97 (188)
T ss_dssp HHHHHHSSEEEEEEEEEEEETTEEEEEEEEE--TTTEEE-SEEE--TT--HHHHHHHHHHHHHB-
T ss_pred HHHHHhCCceEEEEEEEEecCCCcEEEEEec--cCccccCCccEeCCCCChhHHHHHHHHHHcCC
Confidence 333433345556777777654 568999996 35589999999999999999999999987764
No 94
>KOG4195|consensus
Probab=96.60 E-value=0.0022 Score=56.11 Aligned_cols=49 Identities=22% Similarity=0.275 Sum_probs=37.7
Q ss_pred EEEEEEeCC--CCEEEEEEEeCCCCcEEcCceecCCCCCHHHHHHHHHHHHh
Q psy13064 139 FGAILIDKS--LTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVKIIF 188 (192)
Q Consensus 139 ~GaIi~n~~--~~kVLLVk~~~~~~~W~fPkGkie~gEs~~ecAiREv~EE~ 188 (192)
-|+|+.... .-+++.||+. ..+.|.+|||.+++||-...+.+||+.||.
T Consensus 127 ~gai~~~sgk~ile~vavkr~-d~~~WAiPGGmvdpGE~vs~tLkRef~eEa 177 (275)
T KOG4195|consen 127 DGAICRKSGKKILEFVAVKRP-DNGEWAIPGGMVDPGEKVSATLKREFGEEA 177 (275)
T ss_pred CCCeeecccceeeEEEEEecC-CCCcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence 456665322 1245566764 578999999999999999999999999984
No 95
>KOG1689|consensus
Probab=94.09 E-value=0.18 Score=42.83 Aligned_cols=53 Identities=19% Similarity=0.308 Sum_probs=42.6
Q ss_pred cceEEEEEEeCC-CCEEEEEEEeCCCCcEEcCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 136 VPTFGAILIDKS-LTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 136 ip~~GaIi~n~~-~~kVLLVk~~~~~~~W~fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
..+-|++++-+. ..+|||.|- +..-+.+|||.+++||+..+...|=+.|-+|.
T Consensus 70 rsvegvlivheH~lPHvLLLQi--g~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lgr 123 (221)
T KOG1689|consen 70 RSVEGVLIVHEHNLPHVLLLQI--GNTFFKLPGGRLRPGEDEADGLKRLLTESLGR 123 (221)
T ss_pred heeeeeEEEeecCCCeEEEEee--CCEEEecCCCccCCCcchhHHHHHHHHHHhcc
Confidence 334666666543 679999985 34578999999999999999999999999883
No 96
>PLN02839 nudix hydrolase
Probab=91.96 E-value=0.12 Score=48.04 Aligned_cols=26 Identities=8% Similarity=-0.068 Sum_probs=23.9
Q ss_pred cCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 165 FPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 165 fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
..+|.+..||++.+|++||+.||.|-
T Consensus 239 ~VAGGi~aGesp~etliREa~EEAgL 264 (372)
T PLN02839 239 LVAGGLPHGISCGENLVKECEEEAGI 264 (372)
T ss_pred ccccCccCCCCHHHHHHHHHHHHcCC
Confidence 55699999999999999999999984
No 97
>KOG4432|consensus
Probab=86.53 E-value=0.7 Score=42.38 Aligned_cols=60 Identities=22% Similarity=0.311 Sum_probs=45.9
Q ss_pred hcccccceEEEEEEeCCCCEEEEEEEeCC----------------------------CCcEEcCceecCCCCCHHHHHHH
Q psy13064 131 HYKQSVPTFGAILIDKSLTQVLLVQSFFA----------------------------RASWGFPKGKVNQDEPPMTCAIR 182 (192)
Q Consensus 131 ~Y~~~ip~~GaIi~n~~~~kVLLVk~~~~----------------------------~~~W~fPkGkie~gEs~~ecAiR 182 (192)
++.+++-++.+++++.+..++|+|++.+. +-.-++-+|-|++.-|+.+-|..
T Consensus 21 e~~q~~~~v~ill~~r~~eq~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke~s~~eia~e 100 (405)
T KOG4432|consen 21 EFNQKMSSVSILLFHRDLEQFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKELSPREIASE 100 (405)
T ss_pred HHHhhccceEEEEEccchhhhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccccCHHHHhHH
Confidence 34455666778888888889999876420 01245678999999999999999
Q ss_pred HHHHHhcc
Q psy13064 183 EVKIIFCQ 190 (192)
Q Consensus 183 Ev~EE~g~ 190 (192)
||.||-|-
T Consensus 101 ev~eecgy 108 (405)
T KOG4432|consen 101 EVAEECGY 108 (405)
T ss_pred HHHHHhCC
Confidence 99999873
No 98
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=86.52 E-value=0.84 Score=33.97 Aligned_cols=44 Identities=18% Similarity=0.187 Sum_probs=23.0
Q ss_pred EEEEeCCCCEEEEEEEeCC---CCcEEcCceecCCCCCHHHHHHHHHHH
Q psy13064 141 AILIDKSLTQVLLVQSFFA---RASWGFPKGKVNQDEPPMTCAIREVKI 186 (192)
Q Consensus 141 aIi~n~~~~kVLLVk~~~~---~~~W~fPkGkie~gEs~~ecAiREv~E 186 (192)
+++++.+ +++||.|+-.+ +|.|+||.--.+. ++..+.+.+.+.+
T Consensus 2 ~~i~~~~-~~~Ll~kRp~~gll~GLwefP~~e~~~-~~~~~~l~~~~~~ 48 (114)
T PF14815_consen 2 LLIIRSQ-GRVLLEKRPEKGLLAGLWEFPLIESDE-EDDEEELEEWLEE 48 (114)
T ss_dssp EEEEETT-SEEEEEE--SSSTTTT-EE--EEE-SS-S-CHHHHHHHTCC
T ss_pred EEEEEeC-CEEEEEECCCCChhhcCcccCEeCccC-CCCHHHHHHHHHH
Confidence 4555654 79999987432 5799999988874 4334444444433
No 99
>KOG4548|consensus
Probab=84.79 E-value=1.5 Score=39.03 Aligned_cols=42 Identities=21% Similarity=0.331 Sum_probs=35.5
Q ss_pred EEEEEEEe-CCCCcEEcCceec-CCCCCHHHHHHHHHHHHhccC
Q psy13064 150 QVLLVQSF-FARASWGFPKGKV-NQDEPPMTCAIREVKIIFCQH 191 (192)
Q Consensus 150 kVLLVk~~-~~~~~W~fPkGki-e~gEs~~ecAiREv~EE~g~~ 191 (192)
=+|||++. ...+.|.||-+.. ++|++..-||.|++.+-.|+.
T Consensus 140 LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~ 183 (263)
T KOG4548|consen 140 LYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGEN 183 (263)
T ss_pred EEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcch
Confidence 47889843 2457899999999 999999999999999988764
No 100
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=84.48 E-value=1.3 Score=37.50 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=37.0
Q ss_pred EEEEEEeCCCCEEEEEEEeCC----CCcEE-cCceecCCCCCHHHHHHHHHHHHhcc
Q psy13064 139 FGAILIDKSLTQVLLVQSFFA----RASWG-FPKGKVNQDEPPMTCAIREVKIIFCQ 190 (192)
Q Consensus 139 ~GaIi~n~~~~kVLLVk~~~~----~~~W~-fPkGkie~gEs~~ecAiREv~EE~g~ 190 (192)
..+.|+|++ +++|+.|+.-. .+.|+ ---|+--+||+-.+||+|-+.+|+|=
T Consensus 36 FS~~lFne~-g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGi 91 (185)
T COG1443 36 FSSFLFNER-GQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGI 91 (185)
T ss_pred hheeEECCC-CceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCC
Confidence 456789986 78888876421 23343 12366669999999999999999983
No 101
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=82.01 E-value=3.2 Score=35.13 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=35.2
Q ss_pred hcccccceEEEEEEeCCCCEEEEEEEeCCC------CcEEc-CceecCCCCC---HHHH----HHHHHHHHhc
Q psy13064 131 HYKQSVPTFGAILIDKSLTQVLLVQSFFAR------ASWGF-PKGKVNQDEP---PMTC----AIREVKIIFC 189 (192)
Q Consensus 131 ~Y~~~ip~~GaIi~n~~~~kVLLVk~~~~~------~~W~f-PkGkie~gEs---~~ec----AiREv~EE~g 189 (192)
.||..||. ++|.+.+ +||+-.+..++ +..++ -||+++.++- ..+. +-||+.||++
T Consensus 58 ~~KQ~IpY--vvi~~ed--evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~ 126 (203)
T COG4112 58 TTKQVIPY--VVIMDED--EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVD 126 (203)
T ss_pred cccccccE--EEEecCC--EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhC
Confidence 36666764 4566654 88888764221 23333 3899999873 2222 7899999987
No 102
>KOG4432|consensus
Probab=63.46 E-value=12 Score=34.55 Aligned_cols=54 Identities=22% Similarity=0.231 Sum_probs=40.4
Q ss_pred eEEEEEEeCCCCEEEEEEEeC-----CCC-------------------------cEEcCceecCCCCCHHHHHHHHHHHH
Q psy13064 138 TFGAILIDKSLTQVLLVQSFF-----ARA-------------------------SWGFPKGKVNQDEPPMTCAIREVKII 187 (192)
Q Consensus 138 ~~GaIi~n~~~~kVLLVk~~~-----~~~-------------------------~W~fPkGkie~gEs~~ecAiREv~EE 187 (192)
.+.+|++|....+.+|||..+ +.+ .-++-.|.++..-+..+-|.||+.||
T Consensus 231 Svt~iL~n~srk~LVlvqqfRpaVy~G~~~~~~~g~~~~vDe~~~~e~~PaigvTlELcag~Vd~p~s~~e~a~~e~vee 310 (405)
T KOG4432|consen 231 SVTCILVNMSRKELVLVQQFRPAVYVGKNRFLKEGIGKPVDEIDFSESDPAIGVTLELCAGRVDDPFSDPEKAARESVEE 310 (405)
T ss_pred ceEEEEEeccchheehhhhcCcceeecceeecccCCCCcccccccccCCccceeeeeeecccCCCCcccHHHHHHHHHHH
Confidence 467788887777777776542 111 24556699999999999999999999
Q ss_pred hccC
Q psy13064 188 FCQH 191 (192)
Q Consensus 188 ~g~~ 191 (192)
.|=|
T Consensus 311 cGYd 314 (405)
T KOG4432|consen 311 CGYD 314 (405)
T ss_pred hCCC
Confidence 9965
No 103
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=42.03 E-value=44 Score=23.60 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=14.1
Q ss_pred CCcEEcCceecCCCCCHHH
Q psy13064 160 RASWGFPKGKVNQDEPPMT 178 (192)
Q Consensus 160 ~~~W~fPkGkie~gEs~~e 178 (192)
.+.|-+|+|++-.+-.-.+
T Consensus 21 ~~GWl~Pgg~vi~NPlkAq 39 (60)
T PF07026_consen 21 KNGWLMPGGKVITNPLKAQ 39 (60)
T ss_pred cceeecCCCeeEcCHHHHH
Confidence 4579999999987754333
No 104
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=36.68 E-value=32 Score=22.61 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=12.5
Q ss_pred CceecCCCCCHHHHHHHHHHHHhc
Q psy13064 166 PKGKVNQDEPPMTCAIREVKIIFC 189 (192)
Q Consensus 166 PkGkie~gEs~~ecAiREv~EE~g 189 (192)
-||-..+|--|...|.||+-||+-
T Consensus 14 lggLasPgPvp~~~alkELIeELv 37 (43)
T PF03487_consen 14 LGGLASPGPVPSSTALKELIEELV 37 (43)
T ss_dssp ---------S-HHHHHHHHHHHHH
T ss_pred hcccCCCCCCCchHHHHHHHHHHH
Confidence 366777888889999999999973
No 105
>cd09232 Snurportin-1_C C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1. Snurportin-1 (SPN1 or SNUPN) is a nuclear import adaptor for m3G-capped spliceosomal U small nucleoproteins (snRNPs), which are assembled in the cytoplasm. After capping and assembly, the U snRNPs are transported into the nucleus by SPN1 and importin beta; SPN1 is then returned to the cytoplasm by exportin 1 (CRM1), which also transports the non-capped U snRNPs. The U snRNPs are essential elements of the spliceosome, which catalyzes the excision of introns and the ligation of exons to form a mature mRNA. SPN1 contains two domains, an N-terminal importin beta-binding (IBB) domain and a C-terminal m3G cap-binding domain.
Probab=36.21 E-value=22 Score=29.82 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=15.4
Q ss_pred cEEcCceec---CCCCCHHHHHH
Q psy13064 162 SWGFPKGKV---NQDEPPMTCAI 181 (192)
Q Consensus 162 ~W~fPkGki---e~gEs~~ecAi 181 (192)
.=.||+|+- ..|++..||..
T Consensus 57 ~s~lP~g~~~~~~~g~tILDci~ 79 (186)
T cd09232 57 SSALPGGSRKTSNSGYTILDCIY 79 (186)
T ss_pred ccCCCCCCcCCCCCCCEEEEEec
Confidence 346999984 68899888864
No 106
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=32.88 E-value=93 Score=27.60 Aligned_cols=22 Identities=27% Similarity=0.138 Sum_probs=15.7
Q ss_pred CCCEEEEEEEeCC---CCcEEcCce
Q psy13064 147 SLTQVLLVQSFFA---RASWGFPKG 168 (192)
Q Consensus 147 ~~~kVLLVk~~~~---~~~W~fPkG 168 (192)
..+++|+.|+-.. +|.|+||..
T Consensus 237 ~~~~~~~~~r~~~~~~~gl~~~p~~ 261 (275)
T TIGR01084 237 YDGEVLLEQRPEKGLWGGLYCFPQF 261 (275)
T ss_pred CCCeEEEEeCCCCchhhccccCCCC
Confidence 3468999887422 578999974
No 107
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=25.19 E-value=58 Score=31.77 Aligned_cols=85 Identities=14% Similarity=0.373 Sum_probs=57.0
Q ss_pred CCCCchHHHHhhhhhhcccCCccccc------------------chhHHHHHHhhhhhhhhhcccccCccCcccCHHHHH
Q psy13064 8 PYTIRKDILDDLSSRFVINIPHEERG------------------DVIRICFQMELAYWFYLDFYCTQDESLFKAGLKEFF 69 (192)
Q Consensus 8 ~~~~~~~ilddl~~RFiiN~P~ee~~------------------~~~rl~fqie~A~WfY~Df~~~~~~~lp~~~~~~F~ 69 (192)
|.-++..-+|++..++.+|++.+++. +.+|+++.|.-.+ +..+++...........+.+|+
T Consensus 260 P~~~r~~~iD~fIl~~~l~i~d~~~~~f~~~l~~~g~~~~~~~~s~lr~fyll~~~~-~~n~y~~~f~~~f~~~~~e~Y~ 338 (504)
T TIGR03238 260 PVHRRTSKIDQFIIDLSLNLPDQEFNEFKTVLNRLGCVTSNKGRSWLRPFYVLRITY-LTNEYHVKFSQDFEDQTYEKYI 338 (504)
T ss_pred chhhcchhHhHHHHHhhccCCchhHHHHHHHHHhccccccccchHHHHHHHhhhhHh-hcchhhHHHHhhhhhHHHHHHH
Confidence 45567778899999998888855443 4567777777666 6666665554444555678888
Q ss_pred H-----HHHhhC----Ccchhhhhh-hhhHHHHh
Q psy13064 70 F-----QMFHHI----PSLTHFARK-IDTVLDDW 93 (192)
Q Consensus 70 ~-----~lf~~~----p~l~~~~~~-~~~~~~~~ 93 (192)
. .+|... ..|+.+-.. +.+++-.|
T Consensus 339 ~iw~lh~ly~~~~~~kk~l~~~Y~~~~~~ai~kw 372 (504)
T TIGR03238 339 NVYQLHKLFDFNSGNKKEIKVFYNETLKDALYKW 372 (504)
T ss_pred HHHhhhhhhccCcccHHHHHHHHHHHHHHHHHHH
Confidence 8 777655 334444443 66777777
No 108
>PF14044 NETI: NETI protein
Probab=23.68 E-value=60 Score=22.71 Aligned_cols=16 Identities=25% Similarity=0.410 Sum_probs=13.6
Q ss_pred ecCCCCCHHHHHHHHH
Q psy13064 169 KVNQDEPPMTCAIREV 184 (192)
Q Consensus 169 kie~gEs~~ecAiREv 184 (192)
.++++||..+|..|==
T Consensus 3 eV~enETI~~CL~RM~ 18 (57)
T PF14044_consen 3 EVEENETISDCLARMK 18 (57)
T ss_pred eccCCCcHHHHHHHHH
Confidence 5789999999999853
No 109
>PRK10880 adenine DNA glycosylase; Provisional
Probab=21.84 E-value=1.4e+02 Score=27.45 Aligned_cols=21 Identities=24% Similarity=0.055 Sum_probs=15.0
Q ss_pred CCEEEEEEEeC---CCCcEEcCce
Q psy13064 148 LTQVLLVQSFF---ARASWGFPKG 168 (192)
Q Consensus 148 ~~kVLLVk~~~---~~~~W~fPkG 168 (192)
.+++++.|+-. -+|.|+||..
T Consensus 241 ~~~~~l~~r~~~gl~~gl~~fP~~ 264 (350)
T PRK10880 241 GDEVWLEQRPPSGLWGGLFCFPQF 264 (350)
T ss_pred CCEEEEEECCccChhhccccCCCC
Confidence 46888887632 2578999963
Done!