RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13064
(192 letters)
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A
{Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7
PDB: 2qkm_B*
Length = 271
Score = 156 bits (396), Expect = 5e-48
Identities = 61/172 (35%), Positives = 92/172 (53%), Gaps = 36/172 (20%)
Query: 14 DILDDLSSRFVINIPHEERGDVIRICFQMELAYWFYLDFYCTQDESLFKAGLKEFFFQMF 73
+LDDLS+RF++N+P EE+ V R+CFQ+E A+WFY DF Q++ L GL+ F ++F
Sbjct: 15 QVLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLF 74
Query: 74 HHIPSLTHFARKIDTVLDDWRHYKQSVPTFGAILIDKSLTQVLLFLRQGLTVLDDWRHYK 133
H P L +++ + DD+ YK +P GAI++D S+ Q +L
Sbjct: 75 AHCPLLWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCVL---------------- 118
Query: 134 QSVPTFGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVK 185
V+ + A + WGFPKGK+++DE + CAIREV
Sbjct: 119 --------------------VKGWKASSGWGFPKGKIDKDESDVDCAIREVY 150
>2qkl_B SPAC19A8.12 protein, SPBC3B9.21 protein; protein-protein complex,
hydrolase; 2.33A {Schizosaccharomyces pombe} SCOP:
a.242.1.1
Length = 95
Score = 110 bits (276), Expect = 4e-32
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 14 DILDDLSSRFVINIPHEERGDVIRICFQMELAYWFYLDFYCTQDESLFKAGLKEFFFQMF 73
+LDDLS+RF++N+P EE+ V R+CFQ+E A+WFY DF Q++ L GL+ F ++F
Sbjct: 10 QVLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLF 69
Query: 74 HHIPSLTHFARKIDTVLDDWRHYK 97
H P L +++ + DD+ YK
Sbjct: 70 AHCPLLWKWSKVHEEAFDDFLRYK 93
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay,
cytoplasm, hydrolase, manganese, metal-binding, mRNA
processing; NMR {Saccharomyces cerevisiae}
Length = 146
Score = 70.2 bits (172), Expect = 5e-16
Identities = 24/53 (45%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Query: 133 KQSVPTFGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVK 185
K+S+P GA + +++L+++LLVQ SW FP+GK+++DE + C IREVK
Sbjct: 1 KKSIPVRGAAIFNENLSKILLVQGT-ESDSWSFPRGKISKDENDIDCCIREVK 52
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate,
structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex
aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Length = 134
Score = 50.3 bits (121), Expect = 1e-08
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 140 GAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVK 185
G +L +VLL++ W FPKG + E P A+REV
Sbjct: 8 GGVLFKDG--EVLLIK--TPSNVWSFPKGNIEPGEKPEETAVREVW 49
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER
HB8, hydrolase, riken structural genomics/proteomics
initia RSGI; 1.70A {Thermus thermophilus} SCOP:
d.113.1.1 PDB: 1vc8_A 1vc9_A*
Length = 126
Score = 47.3 bits (113), Expect = 2e-07
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 140 GAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVK 185
G ++ + +VLL++ W FPKG E A+REV
Sbjct: 6 GGVVFNAKR-EVLLLRD--RMGFWVFPKGHPEPGESLEEAAVREVW 48
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium
cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP:
d.113.1.1 PDB: 1kt9_A*
Length = 138
Score = 46.0 bits (110), Expect = 5e-07
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 140 GAILIDK--SLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVK 185
G ++ K + LL+Q+ + W PKG V+ E AIRE K
Sbjct: 7 GLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETK 54
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.50A
{Burkholderia pseudomallei}
Length = 157
Score = 46.2 bits (110), Expect = 6e-07
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 129 WRHYKQSVPTFGAILIDKSLTQVLLVQSFFARAS------WGFPKGKVNQDEPPMTCAIR 182
+H +Q GA ++ ++LL++ R WG P GKV+ EP R
Sbjct: 22 MQHTEQPRVGCGAAIVRDG--RILLIK----RKRAPEAGCWGLPGGKVDWLEPVERAVCR 75
Query: 183 EVK 185
E++
Sbjct: 76 EIE 78
>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A
hydrolase, alpha-beta; NMR {Homo sapiens} SCOP:
d.113.1.1 PDB: 1xsb_A 1xsc_A*
Length = 153
Score = 45.5 bits (108), Expect = 1e-06
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 140 GAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVK 185
+D + + LL+Q+ W PKG V E + A+R +
Sbjct: 20 LIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQ 65
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix,
hydrolase, GFG, GFG-1, FGF2AS, structural GENO
structural genomics consortium, SGC; HET: FLC; 1.70A
{Homo sapiens}
Length = 199
Score = 45.7 bits (108), Expect = 2e-06
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 140 GAILIDKSLTQVLLVQS-FFARASWGFPKGKVNQDEPPMTCAIREVK 185
+ D+S ++L+VQ + W FP G +E A+REV
Sbjct: 30 AGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVF 76
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich,
structural genomics, BSGC structure funded by NIH; 1.39A
{Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A
1su2_A* 1sz3_A*
Length = 159
Score = 45.2 bits (107), Expect = 2e-06
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 127 DDWRHYKQSVPTFGAILIDKSLTQVLLVQ------SFFARASWGFPKGKVNQDEPPMTCA 180
D+ H + G +L+++ +LLVQ W P G V E P A
Sbjct: 4 DERTHVPVELRAAGVVLLNER-GDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAA 62
Query: 181 IREVK 185
+RE
Sbjct: 63 VREAC 67
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 2.55A
{Bacillus thuringiensis str}
Length = 171
Score = 44.3 bits (105), Expect = 4e-06
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 130 RHYKQSVPTF-GAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVK 185
+ + + ILI+ +VLLV+ A W P G+V E IRE++
Sbjct: 16 LYIENIMQVRVTGILIEDE--KVLLVKQKVANRDWSLPGGRVENGETLEEAMIREMR 70
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II),
NYSGXRC, 11181H, structural genomics; 2.15A
{Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Length = 364
Score = 44.8 bits (105), Expect = 5e-06
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 129 WRHYKQSVPTFGAILI-------DKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAI 181
WR S + +V +V W +PKGK+ Q+E A+
Sbjct: 11 WRWKAGSDIANDPAIASSKSAQEQLDSIEVCIVHRP-KYDDWSWPKGKLEQNETHRHAAV 69
Query: 182 REVK 185
RE+
Sbjct: 70 REIG 73
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 1e-05
Identities = 32/194 (16%), Positives = 57/194 (29%), Gaps = 53/194 (27%)
Query: 4 QKDKPYTIRKDILDDLSSRFVINIPHEERGDVIRICFQMELAYWFYLDFYC-----TQDE 58
K KPY +L ++ + N + C T+ +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWN----------------------AFNLSCKILLTTRFK 275
Query: 59 SLFKA--GLKEFFFQMFHHIPSLTH------FARKIDTVLDDWRHYKQSVPTFGAILIDK 110
+ + HH +LT + +D D + +I +
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 111 SLTQVLLFLRQGLTVLDDWRHYKQSVPTFGAILIDKSLTQV--LLVQSFFARASWGFPKG 168
S+ R GL D+W+H I I+ SL + + F R S FP
Sbjct: 336 SI-------RDGLATWDNWKHVNCD--KLTTI-IESSLNVLEPAEYRKMFDRLSV-FPPS 384
Query: 169 -KVNQDEPPMTCAI 181
+ P + ++
Sbjct: 385 AHI----PTILLSL 394
Score = 27.1 bits (59), Expect = 4.3
Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 30/140 (21%)
Query: 13 KDILDDLSSRFVIN-----IPHEERG-------DVIRICFQMELAYWFYLDFYCTQDESL 60
KDIL FV N + + D I + ++ E +
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 61 FKAGLKE-------FFFQMFHH---IPSL--THFARKIDTVLDDWRHY-KQSVPTFGAIL 107
+ ++E F PS+ + + D + +D + + K +V L
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 108 IDKSLTQVLLFLR--QGLTV 125
L Q LL LR + + +
Sbjct: 139 ---KLRQALLELRPAKNVLI 155
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2,
protein structure initiative; 1.70A {Chromobacterium
violaceum}
Length = 163
Score = 42.6 bits (100), Expect = 2e-05
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 126 LDDWRHYKQSVPTF--GAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIRE 183
L+D ++ + +I+ VL+ S + P GK N+ E IRE
Sbjct: 3 LEDRKNERLPSDLARRATAIIEMP-DGVLVTAS--RGGRYNLPGGKANRGELRSQALIRE 59
Query: 184 VK 185
++
Sbjct: 60 IR 61
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis,
structural genomics, PSI, structure initiative; HET:
1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Length = 148
Score = 41.3 bits (97), Expect = 3e-05
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 17/66 (25%)
Query: 135 SVPTFG---------------AILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTC 179
PTFG I+ ++LVQ+ ++ P G++ E
Sbjct: 2 KTPTFGKREETLTYQTRYAAYIIVSKPENNTMVLVQA--PNGAYFLPGGEIEGTETKEEA 59
Query: 180 AIREVK 185
REV
Sbjct: 60 IHREVL 65
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol
polyphosphate metabolism, structural genomics,
structural genomics consortium; HET: IHP; 1.25A {Homo
sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Length = 194
Score = 42.0 bits (98), Expect = 3e-05
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 140 GAILID-KSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREV 184
+ +S +VLLV S W P G + +E P A+REV
Sbjct: 44 ACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREV 89
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 1.70A {Methanosarcina mazei}
Length = 153
Score = 40.8 bits (96), Expect = 5e-05
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 140 GAILIDKSLTQVLLVQ----SFFARASWGFPKGKVNQDEPPMTCAIREVK 185
A++ ++ + LL++ S W P GKVN DE REV
Sbjct: 12 YALIRNEK-GEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVW 60
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II),
NYSGXRC, 11180K, structural genomics; 2.00A
{Lactobacillus brevis atcc 367}
Length = 161
Score = 40.8 bits (96), Expect = 6e-05
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 141 AILIDKSLTQVLLVQSF--FARASWGFPKGKVNQDEPPMTCAIREVK 185
++ D +VL+ +A FP G V EP T AIREV
Sbjct: 15 VMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVF 61
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18;
NUDT18, NXR1, nucleotide hydrolase, hydrolase,
structural genomics; 2.10A {Homo sapiens}
Length = 156
Score = 40.1 bits (94), Expect = 9e-05
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 140 GAILIDKSLTQVLLVQ--SFFARASWGFPKGKVNQDEPPMTCAIREVK 185
A+ + + +VLL+Q R SW P G++ E + REVK
Sbjct: 24 LAVFLSEQ-DEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVK 70
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure
initiative II(PSI II), nysgxrc; 1.76A {Bacillus
thuringiensis str} PDB: 3smd_A
Length = 153
Score = 39.8 bits (93), Expect = 1e-04
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 131 HYKQSVPTFGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVK 185
H P+ A++ ++ +L Q + W P G + E P +REV
Sbjct: 16 HELIFXPSVAAVIKNEQ--GEILFQ-YPGGEYWSLPAGAIELGETPEEAVVREVW 67
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2,
protein structure initiative; 2.50A {Bacillus
halodurans}
Length = 188
Score = 40.1 bits (94), Expect = 1e-04
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 9/49 (18%)
Query: 140 GAILIDKSLTQVLLVQSFFARAS---WGFPKGKVNQDEPPMTCAIREVK 185
I++D QVLL+Q + W P GK+ E + RE
Sbjct: 8 NCIVVDHD--QVLLLQ----KPRRGWWVAPGGKMEAGESILETVKREYW 50
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II),
NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium
perfringens atcc 13124}
Length = 197
Score = 40.0 bits (93), Expect = 1e-04
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 109 DKSLTQVLLFLRQGLTVLDDWRHYKQSVPTFGAILIDKSLTQVLLVQSFFARASWGFPKG 168
++ L L +L R + T A ++K + L++ SW + G
Sbjct: 20 ERDKELFLRCLNDFHDIL--TRDNTIAHLTSSAFAVNKERNKFLMIHHNIYN-SWAWTGG 76
Query: 169 KVNQDEPPMTCAIREVK 185
+ ++ + AI+E+K
Sbjct: 77 HSDNEKDQLKVAIKELK 93
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose
pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo
sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A*
3l85_A*
Length = 212
Score = 39.8 bits (93), Expect = 2e-04
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 130 RHYKQSVPTFGAILI------DKSLTQVLLVQSF---FARASWGFPKGKVNQDEPPMTCA 180
+ + T + + ++LV+ F FP G ++ E P A
Sbjct: 52 KRTTRKEQTADGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAA 111
Query: 181 IREVK 185
+RE++
Sbjct: 112 LRELE 116
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 1.80A {Aquifex aeolicus}
Length = 139
Score = 38.8 bits (91), Expect = 2e-04
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 131 HYKQSVPTFGAILI---DKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVK 185
+ K + I+ ++ ++L++ + P G V E A RE++
Sbjct: 4 NVKTPLLATDVIIRLWDGENFKGIVLIERKYPPVGLALPGGFVEVGERVEEAAAREMR 61
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A
{Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Length = 198
Score = 39.2 bits (92), Expect = 2e-04
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 150 QVLLVQSF---FARASWGFPKGKVNQDEPPMTCAIRE 183
++L++ + GF KG ++ E A RE
Sbjct: 61 HLILIREYAVGTESYELGFSKGLIDPGESVYEAANRE 97
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP
binding, dephosphorylation; 2.50A {Escherichia coli}
PDB: 3dku_A
Length = 153
Score = 38.6 bits (90), Expect = 3e-04
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 150 QVLLVQ-SFFARASWGFPKGKVNQDEPPMTCAIREVK 185
+ L+V+ + +A W P G + DE + A RE+
Sbjct: 17 KFLVVEETINGKALWNQPAGHLEADETLVEAAARELW 53
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix
Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP:
d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Length = 160
Score = 38.0 bits (88), Expect = 5e-04
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 131 HYKQSVPTFGAILIDKSLTQVLLVQ--SFFARASWGFPKGKVNQDEPPMTCAIREVK 185
+ + I+ + + LL + + A+ W P G+V +DE R
Sbjct: 13 VRSTPLVSLDFIVENSRG-EFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTM 68
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD,
hydrol structural genomics, NPPSFA; HET: RBY; 1.66A
{Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Length = 182
Score = 38.0 bits (89), Expect = 5e-04
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 150 QVLLVQSF---FARASWGFPKGKVNQDEPPMTCAIRE 183
LLV+ + + P GKV++ E P A RE
Sbjct: 54 TALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRE 90
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics,
structural genomics consortium, SGC, NU MUTT-like,
hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB:
1iry_A 3zr0_A* 3zr1_A
Length = 176
Score = 37.8 bits (88), Expect = 6e-04
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 128 DWRHYKQSVPTFGAILIDKSLTQVLLVQ--SFFARASWGFPKGKVNQDEPPMTCAIREVK 185
H S +++ +VLL F W GKV + E A RE++
Sbjct: 17 RGSHMGASRLYTLVLVLQPQ--RVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQ 74
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics,
MCSG; 1.63A {Streptococcus pneumoniae}
Length = 154
Score = 37.8 bits (88), Expect = 6e-04
Identities = 8/46 (17%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 140 GAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVK 185
A+++ ++L+ + + + G + +E +REVK
Sbjct: 23 TALIVQNH--KLLVTKD---KGKYYTIGGAIQVNESTEDAVVREVK 63
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer,
putative NUDI hydrolase, structural genomics, unknown
function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1
PDB: 1jrk_A 1k26_A
Length = 156
Score = 37.6 bits (87), Expect = 6e-04
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Query: 140 GAILIDKSLTQVLLVQSFFARAS---WGFPKGKVNQDEPPMTCAIREVK 185
+L++ +VLLV+ + +P G V +E P+ RE +
Sbjct: 5 SGVLVENG--KVLLVK----HKRLGVYIYPGGHVEHNETPIEAVKREFE 47
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for
structural GENO JCSG, protein structure initiative,
PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Length = 149
Score = 37.6 bits (87), Expect = 6e-04
Identities = 11/56 (19%), Positives = 16/56 (28%), Gaps = 8/56 (14%)
Query: 133 KQSVPTFGAILIDKSLTQVLLVQSFFARA---SWGFPKGKVNQDEPPMTCAIREVK 185
V I + + Q ++ R W F G +E A RE
Sbjct: 5 PFQVLVIPFIKTEANY-QFGVLH----RTDADVWQFVAGGGEDEEAISETAKRESI 55
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure
initiative, midwest center for structural genomics,
MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Length = 155
Score = 37.0 bits (86), Expect = 0.001
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 130 RHYKQSVPTFGAILIDKSLTQVLLVQ---SFFARASWGFPKGKVNQDEPPMTCAIREVK 185
R + I ++ +V++ + + FP G V DE IRE+
Sbjct: 3 RSQLTILTNICLIEDLET-QRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIY 60
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase;
2.00A {Deinococcus radiodurans}
Length = 145
Score = 36.7 bits (86), Expect = 0.001
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 150 QVLLVQSF---FARASWGFPKGKVNQDEPPMTCAIRE 183
+ +L++ F G V + E A RE
Sbjct: 18 EAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARE 54
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP:
d.113.1.1
Length = 153
Score = 36.7 bits (85), Expect = 0.001
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 138 TFGAILIDKSLTQVLLVQ--SFFARASWGFPKGKVNQDEPPMTCAIREVK 185
T A++ + LLV+ P G + E + REV
Sbjct: 10 TVAAVIEQDD--KYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVL 57
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei
structure initiative; 2.00A {Nitrosomonas europaea atcc
19718}
Length = 189
Score = 36.6 bits (85), Expect = 0.002
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 128 DWRHYKQSVPTFGAILIDKSLTQVLLVQ--SFFARASWGFPKGKVNQDEPPMTCAIREVK 185
HY+ G I ++ +VLL + R W P G + +E + A RE
Sbjct: 32 HTIHYQNPKVIVGCIPEWEN--KVLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETL 89
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT
family, riken structural genomics/proteomics initiative,
RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP:
d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A
1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Length = 170
Score = 36.0 bits (84), Expect = 0.002
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 150 QVLLVQSF---FARASWGFPKGKVNQDEPPMTCAIRE 183
++L V+ A P G + E P+ A RE
Sbjct: 46 RMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRE 82
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica
serovar typhimurium STR. unknown function; HET: PO4;
1.75A {Salmonella enterica subsp} PDB: 3n77_A
Length = 165
Score = 34.5 bits (79), Expect = 0.009
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 163 WGFPKGKVNQDEPPMTCAIREVK 185
W G V E RE++
Sbjct: 57 WALSGGGVEPGERIEEALRREIR 79
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual
domains, hydrolase; HET: AMP; 2.30A {Francisella
tularensis} PDB: 2r5w_B
Length = 352
Score = 35.0 bits (80), Expect = 0.009
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 12/60 (20%)
Query: 132 YKQSVPTFGAILIDKSLTQVLLVQSFFARAS------WGFPKGKVNQDEPPMTCAIREVK 185
+K + T A++I +L+VQ R + W P G + DE IRE+
Sbjct: 204 FKPNFVTVDALVIVND--HILMVQ----RKAHPGKDLWALPGGFLECDETIAQAIIRELF 257
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics,
joint center for structural genomics, J protein
structure initiative; 2.27A {Streptococcus suis}
Length = 206
Score = 34.4 bits (79), Expect = 0.013
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 128 DWRHYKQSVPTFGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVK 185
+ Y+ A + + ++LLVQ W P G + D+ ++EVK
Sbjct: 62 NETGYQTPKLDTRAAIFQE--DKILLVQE--NDGLWSLPGGWCDVDQSVKDNVVKEVK 115
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP
pyrophosphohydrolase MUTT dihydroneo triphosphate
pyrophosphohydrolase folate biosynthesis; 1.80A
{Escherichia coli} PDB: 2o5w_A
Length = 150
Score = 33.3 bits (76), Expect = 0.017
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 140 GAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVK 185
++ + +VL++Q W G V + E A+REVK
Sbjct: 13 LVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVK 58
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.20A {Listeria innocua}
Length = 187
Score = 33.6 bits (77), Expect = 0.021
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 9/45 (20%)
Query: 150 QVLLVQ---------SFFARASWGFPKGKVNQDEPPMTCAIREVK 185
+LL++ W P G V+++E A RE++
Sbjct: 47 HILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELE 91
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT
NEW YORK SGX research center for structural genomics,
nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum}
Length = 144
Score = 32.7 bits (75), Expect = 0.026
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 12/53 (22%)
Query: 140 GAILIDKSLTQVLLVQSFFARAS-------WGFPKGKVNQDEPPMTCAIREVK 185
A LID +VLL Q R W FP GK+ E P +RE+
Sbjct: 12 AAALIDPD-GRVLLAQ----RPPGKSLAGLWEFPGGKLEPGETPEAALVRELA 59
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA
exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus
cereus} PDB: 3q4i_A
Length = 205
Score = 32.8 bits (75), Expect = 0.040
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 9/58 (15%)
Query: 131 HYKQSVPTFGAILIDKSLTQVLLVQSFFARAS---WGFPKGKVNQDEPPMTCAIREVK 185
Y+ A++ ++L V+ S W P G + P A +EV
Sbjct: 63 GYQTPKVDIRAVVFQNE--KLLFVK----EKSDGKWALPGGWADVGYTPTEVAAKEVF 114
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI
ribose, RV1700, hydrolase; HET: APR; 2.00A
{Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A
1mqe_A* 1mqw_A* 1mr2_A*
Length = 207
Score = 32.3 bits (74), Expect = 0.062
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 150 QVLLVQSF---FARASWGFPKGKV-NQDEPPMTCAIRE 183
+ +V + + R W P G + EPP A RE
Sbjct: 56 NIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARE 93
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR
{Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A*
1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Length = 129
Score = 31.0 bits (71), Expect = 0.096
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 12/52 (23%)
Query: 141 AILIDKSLTQVLLVQSFFARAS-------WGFPKGKVNQDEPPMTCAIREVK 185
I+ +++ ++ + + RA+ FP GK+ E P +RE++
Sbjct: 9 GIIRNEN-NEIFITR----RAADAHMANKLEFPGGKIEMGETPEQAVVRELQ 55
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious
diseases, hydrol structural genomics; 2.10A {Bartonella
henselae}
Length = 158
Score = 31.2 bits (71), Expect = 0.11
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 12/53 (22%)
Query: 140 GAILIDKSLTQVLLVQSFFARAS-------WGFPKGKVNQDEPPMTCAIREVK 185
L+D+ +VLL Q R W FP GKV Q E P IRE++
Sbjct: 33 ACALLDQD-NRVLLTQ----RPEGKSLAGLWEFPGGKVEQGETPEASLIRELE 80
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Length = 140
Score = 31.0 bits (71), Expect = 0.12
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 13/53 (24%)
Query: 140 GAILIDKSLTQVLLVQSFFARAS-------WGFPKGKVNQDEPPMTCAIREVK 185
AI+ ++LL Q R + W F GKV DE +RE++
Sbjct: 13 AAIIERDG--KILLAQ----RPAQSDQAGLWEFAGGKVEPDESQRQALVRELR 59
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein
structure initiative, midwest center structural
genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP:
a.4.5.68 d.113.1.6
Length = 273
Score = 31.5 bits (71), Expect = 0.13
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 150 QVLLVQSFFA--RASWGFPKGKVNQDEPPMTCAIREVK 185
+VLL+Q R SW P G VN++E +RE K
Sbjct: 57 KVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETK 94
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual
domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis
SP}
Length = 341
Score = 31.1 bits (70), Expect = 0.18
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 12/64 (18%)
Query: 128 DWRHYKQSVPTFGAILIDKSLTQVLLVQSFFARA------SWGFPKGKVNQDEPPMTCAI 181
Y + T A+++ VL+V+ R P G + Q+E + +
Sbjct: 195 ATAPYAPTFITTDAVVVQA--GHVLMVR----RQAKPGLGLIALPGGFIKQNETLVEGML 248
Query: 182 REVK 185
RE+K
Sbjct: 249 RELK 252
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II),
NYSGXRC, structural genomics; 2.02A {Clostridium
perfringens atcc 13124}
Length = 159
Score = 30.7 bits (69), Expect = 0.19
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 138 TFGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVK 185
T ++ K +VLL A+ G + +E P IRE K
Sbjct: 8 TVSVFIVCKD--KVLLHLHKKAK-KMLPLGGHIEVNELPEEACIREAK 52
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.00A {Bacteroides fragilis}
Length = 140
Score = 30.3 bits (69), Expect = 0.19
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 15/55 (27%)
Query: 140 GAILIDKSLTQVLLVQSFFARAS---------WGFPKGKVNQDEPPMTCAIREVK 185
A++ + L VQ R + FP GKV + E RE+
Sbjct: 10 AAVIRLGE--KYLCVQ----RGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIM 58
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase;
1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A*
3ffu_A*
Length = 153
Score = 30.3 bits (69), Expect = 0.19
Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 13/53 (24%)
Query: 140 GAILIDKSLTQVLLVQSFFARAS-------WGFPKGKVNQDEPPMTCAIREVK 185
L ++L+ Q R W FP GK+ E P RE+
Sbjct: 26 AGFLRKDG--KILVGQ----RPENNSLAGQWEFPGGKIENGETPEEALARELN 72
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase;
HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB:
1qvj_A*
Length = 292
Score = 30.2 bits (67), Expect = 0.37
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 145 DKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIRE 183
K + Q + ++ W P G V+ E RE
Sbjct: 135 GKHILQFVAIKRKDCG-EWAIPGGMVDPGEKISATLKRE 172
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein
STRU initiative, midwest center for structural genomics,
MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP:
a.4.5.68 d.113.1.6
Length = 226
Score = 28.8 bits (64), Expect = 0.85
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 150 QVLLVQSFFA--RASWGFPKGKVNQDEPPMTCAIREVK 185
+LL++ F W G V +DE A R +
Sbjct: 29 SLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLA 66
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA
turnover, structural genomic consortium, SGC; HET: IMP;
1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A
Length = 217
Score = 27.9 bits (61), Expect = 2.0
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 116 LLFLRQGLTVLDDWRHYKQSV---PTFGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQ 172
L L + L + WRH ++ P G + L +L+Q F GFP G V+
Sbjct: 28 RLELGEALALGSGWRHVCHALLYAPDPGMLFGRIPLRYAILMQMRF-DGRLGFPGGFVDT 86
Query: 173 DEPPMTCAI-REVK 185
+ + + RE++
Sbjct: 87 QDRSLEDGLNRELR 100
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed
4-stranded beta sheet, 2-stranded antiparallel sheet;
NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Length = 165
Score = 26.8 bits (60), Expect = 3.1
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 10/57 (17%)
Query: 140 GAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIRE---------VKII 187
G L++ ++ +W P+G +++ E P AIRE ++I
Sbjct: 18 GICLMNND-KKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVI 73
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold,
hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB:
2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Length = 212
Score = 27.1 bits (59), Expect = 3.3
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 13/68 (19%)
Query: 126 LDDWRHY-------KQSVPTFGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPM- 177
L+ ++H F + I + +L++ F R GFP G V+ + +
Sbjct: 29 LEGYKHACHALLHAPSQAKLFDRVPIRRV---LLMMMRFDGR--LGFPGGFVDTRDISLE 83
Query: 178 TCAIREVK 185
RE++
Sbjct: 84 EGLKRELE 91
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans,
hydrolase; 1.70A {Deinococcus radiodurans} SCOP:
d.113.1.1 PDB: 1nqy_A
Length = 194
Score = 26.9 bits (60), Expect = 3.8
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 12/49 (24%)
Query: 143 LIDKSLTQVLLVQSFFARAS--------WGFPKGKVNQDEPPMTCAIRE 183
L ++ +VLL R+S FP G ++ E P A+RE
Sbjct: 42 LTREADPRVLLTV----RSSELPTHKGQIAFPGGSLDAGETPTQAALRE 86
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 27.0 bits (59), Expect = 4.0
Identities = 16/82 (19%), Positives = 21/82 (25%), Gaps = 27/82 (32%)
Query: 2 EKQKDK--------PY-TIRKDILDDLSSRFVINIPHEERGDVIRICFQMELAYWFYLDF 52
KQK K P+ I I +P E L+
Sbjct: 156 TKQKGKKFLVIAYEPFENI------------AIELPPNEILFSENNDMDNNNDGVDELNK 203
Query: 53 YCTQ-DESLFKAGLKEFFFQMF 73
CT D K ++ Q F
Sbjct: 204 KCTFWDAIS-----KLYYVQFF 220
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein,
flavoprotein, FAD, mitochondrion, plastid, chromophore,
chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana}
PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Length = 525
Score = 26.8 bits (60), Expect = 4.9
Identities = 3/32 (9%), Positives = 9/32 (28%)
Query: 67 EFFFQMFHHIPSLTHFARKIDTVLDDWRHYKQ 98
++F + + V W ++
Sbjct: 330 DYFRFLSIKCGNSLFHLGGPRNVQGKWSQDQK 361
>2r6v_A Uncharacterized protein PH0856; FMN-binding protein, flavin
reductase like DOMA structural genomics, joint center
for structural genomics; HET: FMN; 1.25A {Pyrococcus
horikoshii}
Length = 191
Score = 26.2 bits (58), Expect = 6.3
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 20 SSRFVINIPHEERGDVIRICF 40
FVI++P + + I
Sbjct: 77 YGEFVISVPSLDVLRDVWIAG 97
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response
regulator, beryllium fluoride, transcription factor,
activated, virulence; 1.90A {Escherichia coli} SCOP:
c.23.1.1 PDB: 2pkx_A
Length = 121
Score = 25.5 bits (57), Expect = 8.1
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 16/42 (38%)
Query: 122 GLTVLDDWRHYKQSVPTFGAILIDKSLTQVLLVQSFFARASW 163
GL+++ WR S+P IL+ LT AR SW
Sbjct: 59 GLSLIRRWRSNDVSLP----ILV---LT---------ARESW 84
>1usc_A Putative styrene monooxygenase small component; FMN-binding
protein, structural genomics, riken structural
genomics/proteomics initiative; HET: FMN; 1.24A
{Thermus thermophilus} SCOP: b.45.1.2 PDB: 1usf_A*
Length = 178
Score = 25.4 bits (56), Expect = 9.3
Identities = 5/29 (17%), Positives = 9/29 (31%), Gaps = 9/29 (31%)
Query: 20 SSRFVINIPHEERGDVIRICFQMELAYWF 48
+ RF + Q +L +W
Sbjct: 67 ARRFSASFHPFG---------QKDLVHWL 86
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.142 0.450
Gapped
Lambda K H
0.267 0.0691 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,109,948
Number of extensions: 176938
Number of successful extensions: 469
Number of sequences better than 10.0: 1
Number of HSP's gapped: 464
Number of HSP's successfully gapped: 72
Length of query: 192
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 104
Effective length of database: 4,244,745
Effective search space: 441453480
Effective search space used: 441453480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (24.7 bits)