RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13064
(192 letters)
>d2qklb1 a.242.1.1 (B:2-91) mRNA decapping enzyme Dcp2p,
N-terminal domain {Schizosaccharomyces pombe [TaxId:
4896]}
Length = 90
Score = 103 bits (258), Expect = 9e-30
Identities = 34/82 (41%), Positives = 53/82 (64%)
Query: 13 KDILDDLSSRFVINIPHEERGDVIRICFQMELAYWFYLDFYCTQDESLFKAGLKEFFFQM 72
+LDDLS+RF++N+P EE+ V R+CFQ+E A+WFY DF Q++ L GL+ F ++
Sbjct: 8 SQVLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKL 67
Query: 73 FHHIPSLTHFARKIDTVLDDWR 94
F H P L +++ + DD+
Sbjct: 68 FAHCPLLWKWSKVHEEAFDDFL 89
>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic
domain {Schizosaccharomyces pombe [TaxId: 4896]}
Length = 151
Score = 57.1 bits (137), Expect = 2e-11
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 136 VPTFGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVK 185
+P GAI++D S+ Q +LV+ + A + WGFPKGK+++DE + CAIREV
Sbjct: 2 IPVRGAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVY 51
>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A
hydrolase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 153
Score = 45.6 bits (107), Expect = 4e-07
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 144 IDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVKIIFCQH 191
+D + + LL+Q+ W PKG V E + A+R +
Sbjct: 24 VDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIE 71
>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus
thermophilus [TaxId: 274]}
Length = 126
Score = 43.1 bits (101), Expect = 2e-06
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 140 GAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVK 185
G ++ + +VLL++ W FPKG E A+REV
Sbjct: 6 GGVVFNAK-REVLLLRD--RMGFWVFPKGHPEPGESLEEAAVREVW 48
>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141
{Enterococcus faecalis [TaxId: 1351]}
Length = 147
Score = 42.1 bits (98), Expect = 5e-06
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 127 DDWRHYKQSVPTFGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVK 185
++ Y+ I+ ++LVQ+ ++ P G++ E REV
Sbjct: 9 EETLTYQTR-YAAYIIVSKPENNTMVLVQA--PNGAYFLPGGEIEGTETKEEAIHREVL 64
>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 158
Score = 40.5 bits (94), Expect = 3e-05
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 127 DDWRHYKQSVPTFGAILIDKSLTQVLLVQ------SFFARASWGFPKGKVNQDEPPMTCA 180
D+ H + G +L+++ +LLVQ W P G V E P A
Sbjct: 3 DERTHVPVELRAAGVVLLNER-GDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAA 61
Query: 181 IREVK 185
+RE
Sbjct: 62 VREAC 66
>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A
hydrolase) {Narrow-leaved blue lupine (Lupinus
angustifolius) [TaxId: 3871]}
Length = 165
Score = 39.8 bits (92), Expect = 4e-05
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 137 PTFGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVKIIFCQH 191
G L++ ++ +W P+G +++ E P AIRE++
Sbjct: 15 RNVGICLMNND-KKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVT 68
>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate
phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 38.2 bits (88), Expect = 1e-04
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 128 DWRHYKQSVPTFGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVK 185
D YK+ +S +VLLV S W P G + +E P A+REV
Sbjct: 6 DGDGYKKRAA--CLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVC 61
>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase
Hmth1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 156
Score = 37.0 bits (85), Expect = 5e-04
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 150 QVLLVQ--SFFARASWGFPKGKVNQDEPPMTCAIREVK 185
+VLL F W GKV + E A RE++
Sbjct: 17 RVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQ 54
>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose
pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 292
Score = 37.0 bits (85), Expect = 7e-04
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 7/44 (15%)
Query: 145 DKSLTQVLLVQSFFARA---SWGFPKGKVNQDEPPMTCAIREVK 185
K + Q + ++ R W P G V+ E RE
Sbjct: 135 GKHILQFVAIK----RKDCGEWAIPGGMVDPGEKISATLKREFG 174
>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus
radiodurans [TaxId: 1299]}
Length = 187
Score = 34.4 bits (78), Expect = 0.004
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 12/59 (20%)
Query: 142 ILIDKSLTQVLLVQSFFARAS--------WGFPKGKVNQDEPPMTCAIREVKIIFCQHS 192
L ++ +VLL R+S FP G ++ E P A+RE +
Sbjct: 38 ALTREADPRVLLTV----RSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDP 92
>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 152
Score = 33.7 bits (76), Expect = 0.006
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 140 GAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREVK 185
+L++ +VLLV+ + +P G V +E P+ RE +
Sbjct: 5 SGVLVENG--KVLLVKHKR-LGVYIYPGGHVEHNETPIEAVKREFE 47
>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184
{Nitrosomonas europaea [TaxId: 915]}
Length = 146
Score = 32.5 bits (73), Expect = 0.013
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 138 TFGAILIDKSLTQVLLVQSF--FARASWGFPKGKVNQDEPPMTCAIREVK 185
T A++ + LLV+ P G + E + REV
Sbjct: 5 TVAAVIEQDD--KYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVL 52
>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African
clawed frog (Xenopus laevis) [TaxId: 8355]}
Length = 196
Score = 32.7 bits (74), Expect = 0.016
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 12/66 (18%)
Query: 126 LDDWRH-------YKQSVPTFGAILIDKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMT 178
L+ ++H F + I + +L++ F GFP G V+ + +
Sbjct: 16 LEGYKHACHALLHAPSQAKLFDRVPIRR---VLLMMMRF--DGRLGFPGGFVDTRDISLE 70
Query: 179 CAIREV 184
++
Sbjct: 71 EGLKRE 76
>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus
thermophilus [TaxId: 274]}
Length = 158
Score = 32.0 bits (72), Expect = 0.020
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 125 VLDDWRHYKQSVPTFGAILIDKSLTQVLLVQSF---FARASWGFPKGKVNQDEPPMTCAI 181
L+ + P I + + ++L V+ A P G + E P+ A
Sbjct: 13 ALEGRYEIVEHKPAVAVIALREG--RMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAAR 70
Query: 182 REV 184
RE+
Sbjct: 71 REL 73
>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115)
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 155
Score = 32.0 bits (72), Expect = 0.023
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 132 YKQSVPTFGAILIDKSLTQVLLVQSFFARA---SWGFPKGKVNQDEPPMTCAIREVKI 186
+ ++ T ++ D +V++ + FP G V DE IRE+
Sbjct: 4 SQLTILTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYE 61
>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD
{Escherichia coli [TaxId: 562]}
Length = 160
Score = 31.4 bits (70), Expect = 0.037
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 127 DDWRHYKQSVP--TFGAILIDKSLTQVLLVQ--SFFARASWGFPKGKVNQDEPPMTCAIR 182
+D+ +S P + I+ + + LL + + A+ W P G+V +DE R
Sbjct: 7 EDFATVVRSTPLVSLDFIVENSR-GEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFER 65
Query: 183 EVK 185
Sbjct: 66 LTM 68
>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal
domain {Enterococcus faecalis [TaxId: 1351]}
Length = 202
Score = 31.3 bits (70), Expect = 0.039
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 150 QVLLVQ--SFFARASWGFPKGKVNQDEPPMTCAIREVK 185
+VLL+Q R SW P G VN++E +RE K
Sbjct: 55 KVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETK 92
>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia
coli [TaxId: 562]}
Length = 186
Score = 31.2 bits (70), Expect = 0.045
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 140 GAILIDKSLTQVLLVQSF---FARASWGFPKGKVNQDEPPMTCAIREVKIIFCQH 191
+++ ++L++ + GF KG ++ E A RE+K
Sbjct: 50 AVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFG 104
>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia
coli [TaxId: 562]}
Length = 131
Score = 28.9 bits (64), Expect = 0.18
Identities = 8/43 (18%), Positives = 10/43 (23%), Gaps = 1/43 (2%)
Query: 150 QVLLV-QSFFARASWGFPKGKVNQDEPPMTCAIREVKIIFCQH 191
+LL + G V E REV
Sbjct: 15 SILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIK 57
>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A
hydrolase) {Caenorhabditis elegans [TaxId: 6239]}
Length = 137
Score = 27.6 bits (60), Expect = 0.64
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 136 VPTFGAILI--DKSLTQVLLVQSFFARASWGFPKGKVNQDEPPMTCAIREV 184
V G ++ + LL+Q+ + W PKG V+ E AIRE
Sbjct: 2 VKAAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRET 52
>d1m8ra_ a.133.1.2 (A:) Snake phospholipase A2 {Snake (Agkistrodon
halys) [TaxId: 8714]}
Length = 124
Score = 27.2 bits (60), Expect = 0.82
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 6/28 (21%)
Query: 38 ICFQMELA------YWFYLDFYCTQDES 59
ICF+ L YW + C Q+ES
Sbjct: 94 ICFRDNLNTYNDKKYWAFGAKNCPQEES 121
>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase
(MutT) {Escherichia coli [TaxId: 562]}
Length = 129
Score = 25.3 bits (54), Expect = 4.0
Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 140 GAILIDKSLTQVLLVQSF---FARASWGFPKGKVNQDEPPMTCAIREVKIIFCQH 191
I+ +++ ++ + + FP GK+ E P +RE++
Sbjct: 8 VGIIRNEN-NEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGIT 61
>d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein
ParB/Spo0J {Thermus thermophilus [TaxId: 274]}
Length = 93
Score = 24.1 bits (52), Expect = 6.6
Identities = 12/85 (14%), Positives = 27/85 (31%), Gaps = 9/85 (10%)
Query: 44 LAYWFYLDFYCTQDESLFKAGLKEFFFQMFHHIPSLTHFARKIDTVLDDWRHYKQSVPTF 103
Y L+ TQ+E + G + L ++ + +
Sbjct: 10 RGYQALLEMGLTQEEVARRVGKARSTVANALRLLQLPP--EALEALERGEITAGHARA-- 65
Query: 104 GAILIDKSLTQVLLF---LRQGLTV 125
+L+ + ++ L +GL+V
Sbjct: 66 --LLMLEPEDRLWGLKEILEKGLSV 88
>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli
[TaxId: 562]}
Length = 209
Score = 24.7 bits (53), Expect = 7.2
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 8/52 (15%)
Query: 141 AILIDKSLTQVLLVQSFFARAS--------WGFPKGKVNQDEPPMTCAIREV 184
+ D +V+L++ A G + + E A RE
Sbjct: 62 LLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREA 113
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853
{Thermotoga maritima [TaxId: 2336]}
Length = 89
Score = 23.5 bits (50), Expect = 9.3
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 16/87 (18%)
Query: 10 TIRKDI-----LDDLSSRFVINIPHEERGDVIRICFQMELAYWFYLDFYCTQDESLFKAG 64
T K++ +D + + F+ NI HE R + I E Y + +
Sbjct: 5 TESKELERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLST-------- 56
Query: 65 LKEFFFQMFHHIPSLTHFARKIDTVLD 91
+ I H ++ +LD
Sbjct: 57 ---LKEFLEVIIDQSNHLENLLNELLD 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.142 0.450
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 784,712
Number of extensions: 35492
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 33
Length of query: 192
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,309,196
Effective search space: 146629952
Effective search space used: 146629952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.2 bits)