BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13065
(114 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CYC6|DCP2_MOUSE m7GpppN-mRNA hydrolase OS=Mus musculus GN=Dcp2 PE=1 SV=2
Length = 422
Score = 94.7 bits (234), Expect = 2e-19, Method: Composition-based stats.
Identities = 46/96 (47%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Query: 13 AKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFP 72
A++V EETGFD I +D Y+E NDQL RLY+IPGVP D KF P+TR EI+ +WF
Sbjct: 142 AREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGVPKDTKFNPKTRREIRNIEWFS 201
Query: 73 IGDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSI 108
I LP R ++ G + N FFM +PFI +
Sbjct: 202 IEKLPCHRNDMTPKSKLG--LAPNKFFMAIPFIRPL 235
>sp|Q5REQ8|DCP2_PONAB m7GpppN-mRNA hydrolase OS=Pongo abelii GN=DCP2 PE=2 SV=1
Length = 385
Score = 93.6 bits (231), Expect = 4e-19, Method: Composition-based stats.
Identities = 45/96 (46%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Query: 13 AKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFP 72
A++V EETGFD I +D Y+E NDQL RLY+IPG+P D KF P+TR EI+ +WF
Sbjct: 142 AREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGIPKDTKFNPKTRREIRNIEWFS 201
Query: 73 IGDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSI 108
I LP R ++ G + N FFM +PFI +
Sbjct: 202 IEKLPCHRNDMTPKSKLG--LAPNKFFMAIPFIRPL 235
>sp|Q8IU60|DCP2_HUMAN m7GpppN-mRNA hydrolase OS=Homo sapiens GN=DCP2 PE=1 SV=2
Length = 420
Score = 93.2 bits (230), Expect = 4e-19, Method: Composition-based stats.
Identities = 45/96 (46%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Query: 13 AKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFP 72
A++V EETGFD I +D Y+E NDQL RLY+IPG+P D KF P+TR EI+ +WF
Sbjct: 142 AREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGIPKDTKFNPKTRREIRNIEWFS 201
Query: 73 IGDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSI 108
I LP R ++ G + N FFM +PFI +
Sbjct: 202 IEKLPCHRNDMTPKSKLG--LAPNKFFMAIPFIRPL 235
>sp|O62255|DCP2_CAEEL mRNA-decapping enzyme 2 OS=Caenorhabditis elegans GN=dcap-2 PE=2
SV=4
Length = 786
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 14 KQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI 73
++ EETGFD ++ + ND + RLYL+ VP DF F PQTR EI+ +WF I
Sbjct: 287 RETFEETGFDFGIYSEKEKKFQRFINDGMVRLYLVKNVPKDFNFQPQTRKEIRKIEWFKI 346
Query: 74 GDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSINI 110
DLP+ + + + G N F+M+MPF+ I I
Sbjct: 347 DDLPTDKTDELPAYLQG-----NKFYMVMPFVKDIQI 378
>sp|O13828|DCP2_SCHPO mRNA decapping complex subunit 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dcp2 PE=1 SV=1
Length = 741
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 14 KQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI 73
++V EETGFD S I + +++ T Q RLY+IPG+ +D +F +TR EI +W +
Sbjct: 142 REVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNL 201
Query: 74 GDLPSSRKEIKTVLINGTPVGTNAFFMIMPFI 105
DLP+ +K N N F+M++PF+
Sbjct: 202 MDLPTFKK-------NKPQTMKNKFYMVIPFL 226
>sp|Q8GW31|DCP2_ARATH mRNA-decapping enzyme subunit 2 OS=Arabidopsis thaliana GN=DCP2
PE=1 SV=1
Length = 373
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 14 KQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI 73
++VLEETGFD S L+ + Y+E + Q RLY++ GV D FAP T+ EI W +
Sbjct: 153 REVLEETGFDVSKLLKREEYIEFVFRQQRVRLYIVAGVTEDTVFAPLTKKEISEITWHRL 212
Query: 74 GDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSI 108
L + E+ T ++G + +M+ PF++S+
Sbjct: 213 DHLQPASNEVITHGVSGLKL-----YMVAPFLSSL 242
>sp|Q75BK1|DCP2_ASHGO mRNA-decapping enzyme subunit 2 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DCP2
PE=3 SV=1
Length = 880
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 14 KQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQW 70
++V+EE GFD ++ + ED Y+E + ++YL+ GVP DF F PQ R EI+ +W
Sbjct: 148 REVMEEIGFDLTNYVLEDQYIERNIGGKNYKIYLVKGVPQDFAFKPQVRNEIEKIEW 204
>sp|P53550|DCP2_YEAST mRNA-decapping enzyme subunit 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DCP2 PE=1 SV=1
Length = 970
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 14 KQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI 73
++V EE GFD + I ++ ++E + +++LI GV F F PQ R EI +WF
Sbjct: 148 REVKEEIGFDLTDYIDDNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRNEIDKIEWFDF 207
Query: 74 GDLPSS--RKEIKTVLING 90
+ + + IK LIN
Sbjct: 208 KKISKTMYKSNIKYYLINS 226
>sp|A6ZRW5|DCP2_YEAS7 mRNA-decapping enzyme subunit 2 OS=Saccharomyces cerevisiae (strain
YJM789) GN=DCP2 PE=3 SV=1
Length = 970
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 14 KQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI 73
++V EE GFD + I ++ ++E + +++LI GV F F PQ R EI +WF
Sbjct: 148 REVKEEIGFDLTDYIDDNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRNEIDKIEWFDF 207
Query: 74 GDLPSS--RKEIKTVLING 90
+ + + IK LIN
Sbjct: 208 KKISKTMYKSNIKYYLINS 226
>sp|Q5QYU0|TOLB_IDILO Protein TolB OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM
15497 / L2-TR) GN=tolB PE=3 SV=1
Length = 449
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 10/64 (15%)
Query: 15 QVLEETGFDSSHLIAEDSYL---ETTYNDQLTRLYLIPGVPIDFKFA---PQTRGEIKAC 68
QVL +T D S +A + + TT+N++ ++ V ID +F P T GEIK+
Sbjct: 388 QVLTKTSLDESPSVAPNGSMVIYSTTHNNK----QVLALVSIDGRFKARLPATDGEIKSP 443
Query: 69 QWFP 72
W P
Sbjct: 444 AWSP 447
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,275,809
Number of Sequences: 539616
Number of extensions: 1584001
Number of successful extensions: 3385
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3374
Number of HSP's gapped (non-prelim): 12
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)