Query psy13065
Match_columns 114
No_of_seqs 109 out of 861
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 18:33:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13065.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13065hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03672 Dcp2p mRNA decapping e 99.7 1.1E-17 2.3E-22 118.1 7.6 105 2-112 34-138 (145)
2 cd04679 Nudix_Hydrolase_20 Mem 99.4 1.2E-12 2.7E-17 88.6 6.4 84 2-87 37-123 (125)
3 KOG2937|consensus 99.3 2.8E-13 6E-18 106.5 1.5 107 3-113 116-222 (348)
4 cd04680 Nudix_Hydrolase_21 Mem 99.3 4.8E-12 1E-16 84.5 6.7 83 2-87 32-116 (120)
5 cd04700 DR1025_like DR1025 fro 99.3 4.7E-12 1E-16 88.5 6.3 78 2-81 48-127 (142)
6 cd04691 Nudix_Hydrolase_32 Mem 99.3 5.3E-12 1.2E-16 85.3 5.4 78 2-84 36-113 (117)
7 cd04683 Nudix_Hydrolase_24 Mem 99.2 1.9E-11 4.1E-16 82.0 6.4 80 2-82 35-117 (120)
8 cd04678 Nudix_Hydrolase_19 Mem 99.2 3.2E-11 6.9E-16 81.9 7.2 81 2-82 37-120 (129)
9 cd04671 Nudix_Hydrolase_13 Mem 99.2 2.8E-11 6.1E-16 82.8 6.9 75 2-80 35-111 (123)
10 PLN02325 nudix hydrolase 99.2 4E-11 8.7E-16 84.2 7.3 86 2-87 43-133 (144)
11 cd03427 MTH1 MutT homolog-1 (M 99.2 4.1E-11 9E-16 82.0 6.9 75 2-80 35-112 (137)
12 cd04684 Nudix_Hydrolase_25 Con 99.2 5.8E-11 1.3E-15 79.8 7.1 77 2-79 34-117 (128)
13 cd04661 MRP_L46 Mitochondrial 99.2 3.8E-11 8.2E-16 82.9 5.8 84 2-89 35-130 (132)
14 cd04689 Nudix_Hydrolase_30 Mem 99.2 7E-11 1.5E-15 80.0 6.9 78 2-79 32-114 (125)
15 cd04672 Nudix_Hydrolase_14 Mem 99.2 5E-11 1.1E-15 80.7 5.8 83 2-87 33-120 (123)
16 cd03426 CoAse Coenzyme A pyrop 99.2 1.4E-11 3.1E-16 87.4 3.1 78 2-82 41-121 (157)
17 cd03673 Ap6A_hydrolase Diadeno 99.2 4.1E-11 8.8E-16 80.8 5.0 78 2-81 36-118 (131)
18 cd04673 Nudix_Hydrolase_15 Mem 99.2 4.8E-11 1E-15 79.7 5.3 76 2-81 34-116 (122)
19 cd04681 Nudix_Hydrolase_22 Mem 99.2 6.6E-11 1.4E-15 80.4 6.0 74 2-77 36-113 (130)
20 cd04687 Nudix_Hydrolase_28 Mem 99.2 8.2E-11 1.8E-15 80.0 6.3 80 2-81 34-123 (128)
21 cd04670 Nudix_Hydrolase_12 Mem 99.2 5.6E-11 1.2E-15 80.7 5.0 79 2-81 36-115 (127)
22 cd03671 Ap4A_hydrolase_plant_l 99.2 7.1E-11 1.5E-15 82.6 5.6 81 2-82 36-134 (147)
23 cd04688 Nudix_Hydrolase_29 Mem 99.1 1.5E-10 3.2E-15 78.4 6.8 78 2-80 32-119 (126)
24 cd04682 Nudix_Hydrolase_23 Mem 99.1 5.8E-11 1.3E-15 80.3 4.5 76 2-80 38-115 (122)
25 cd04669 Nudix_Hydrolase_11 Mem 99.1 1.7E-10 3.6E-15 78.3 6.8 74 2-80 34-115 (121)
26 cd04667 Nudix_Hydrolase_10 Mem 99.1 1.3E-10 2.9E-15 77.4 6.1 79 2-86 30-108 (112)
27 cd04696 Nudix_Hydrolase_37 Mem 99.1 5.7E-11 1.2E-15 80.5 4.4 75 2-80 35-115 (125)
28 cd03430 GDPMH GDP-mannose glyc 99.1 1.2E-10 2.5E-15 81.7 6.0 77 2-80 47-133 (144)
29 cd03675 Nudix_Hydrolase_2 Cont 99.1 1.3E-10 2.8E-15 79.4 5.7 78 2-81 33-113 (134)
30 cd03424 ADPRase_NUDT5 ADP-ribo 99.1 5.3E-11 1.2E-15 81.6 3.6 79 2-81 38-117 (137)
31 cd03674 Nudix_Hydrolase_1 Memb 99.1 2.7E-10 5.9E-15 78.9 6.8 76 2-79 35-123 (138)
32 PRK15434 GDP-mannose mannosyl 99.1 2E-10 4.3E-15 82.5 5.6 77 2-81 52-139 (159)
33 cd04677 Nudix_Hydrolase_18 Mem 99.1 4.8E-10 1E-14 76.0 7.3 79 2-82 39-125 (132)
34 cd04690 Nudix_Hydrolase_31 Mem 99.1 2.7E-10 5.8E-15 76.0 5.7 72 2-78 32-109 (118)
35 cd04692 Nudix_Hydrolase_33 Mem 99.1 1.3E-10 2.8E-15 81.0 4.3 79 2-81 43-129 (144)
36 cd04693 Nudix_Hydrolase_34 Mem 99.1 1E-10 2.2E-15 79.4 3.4 76 2-81 38-115 (127)
37 PRK00241 nudC NADH pyrophospha 99.1 3.6E-10 7.8E-15 86.7 6.4 77 2-82 165-241 (256)
38 COG1051 ADP-ribose pyrophospha 99.1 2.9E-10 6.2E-15 80.4 5.3 78 2-81 44-124 (145)
39 PRK15393 NUDIX hydrolase YfcD; 99.1 1.9E-10 4.1E-15 83.7 4.4 75 2-80 75-150 (180)
40 cd04697 Nudix_Hydrolase_38 Mem 99.0 2.1E-10 4.6E-15 78.2 4.0 76 2-81 38-114 (126)
41 cd04666 Nudix_Hydrolase_9 Memb 99.0 3E-10 6.6E-15 77.7 4.6 75 2-79 35-115 (122)
42 PRK15472 nucleoside triphospha 99.0 5.2E-10 1.1E-14 77.4 5.6 79 2-82 40-128 (141)
43 cd04695 Nudix_Hydrolase_36 Mem 99.0 3.2E-10 6.9E-15 77.7 4.3 78 2-82 36-117 (131)
44 PF00293 NUDIX: NUDIX domain; 99.0 2.3E-10 5E-15 76.8 3.0 80 2-82 39-122 (134)
45 cd04664 Nudix_Hydrolase_7 Memb 99.0 3.6E-10 7.8E-15 76.8 3.8 76 2-80 37-119 (129)
46 cd03428 Ap4A_hydrolase_human_l 99.0 4E-10 8.7E-15 76.3 4.0 77 2-81 36-117 (130)
47 PRK00714 RNA pyrophosphohydrol 99.0 5.2E-10 1.1E-14 79.5 4.5 80 2-81 41-137 (156)
48 cd03429 NADH_pyrophosphatase N 99.0 7.4E-10 1.6E-14 76.3 5.1 74 2-79 34-107 (131)
49 cd02885 IPP_Isomerase Isopente 99.0 6.4E-10 1.4E-14 79.4 4.2 76 2-81 68-150 (165)
50 cd04699 Nudix_Hydrolase_39 Mem 98.9 2.1E-09 4.6E-14 72.2 6.0 76 2-81 38-116 (129)
51 PRK09438 nudB dihydroneopterin 98.9 5.5E-10 1.2E-14 77.9 3.2 76 2-81 40-131 (148)
52 cd04511 Nudix_Hydrolase_4 Memb 98.9 3.4E-09 7.3E-14 72.5 6.5 70 2-77 47-117 (130)
53 cd04676 Nudix_Hydrolase_17 Mem 98.9 3.7E-09 8E-14 70.6 6.4 78 2-81 34-119 (129)
54 PRK11762 nudE adenosine nucleo 98.9 2E-09 4.4E-14 78.3 4.0 78 2-81 83-161 (185)
55 PRK03759 isopentenyl-diphospha 98.8 4.6E-09 1E-13 76.4 4.7 76 2-81 72-154 (184)
56 cd04686 Nudix_Hydrolase_27 Mem 98.8 6.3E-09 1.4E-13 71.5 4.7 78 2-80 31-120 (131)
57 cd02883 Nudix_Hydrolase Nudix 98.8 2.2E-08 4.8E-13 65.4 6.9 77 2-80 34-113 (123)
58 PRK10546 pyrimidine (deoxy)nuc 98.8 1.2E-08 2.5E-13 69.6 5.7 73 2-81 39-114 (135)
59 COG2816 NPY1 NTP pyrophosphohy 98.8 2.9E-09 6.2E-14 82.7 2.9 74 2-82 177-254 (279)
60 cd03425 MutT_pyrophosphohydrol 98.8 2.4E-08 5.1E-13 66.0 6.8 75 2-81 37-112 (124)
61 PRK10729 nudF ADP-ribose pyrop 98.8 1.2E-08 2.7E-13 75.7 5.9 80 2-81 91-173 (202)
62 cd04662 Nudix_Hydrolase_5 Memb 98.8 2E-08 4.2E-13 70.0 6.3 25 2-26 42-66 (126)
63 PRK05379 bifunctional nicotina 98.8 1.4E-08 3E-13 80.5 6.1 77 2-79 237-322 (340)
64 cd04685 Nudix_Hydrolase_26 Mem 98.8 1E-08 2.3E-13 71.2 4.3 82 2-83 37-127 (133)
65 PRK10776 nucleoside triphospha 98.7 4.7E-08 1E-12 65.4 6.8 73 2-81 40-115 (129)
66 PRK15009 GDP-mannose pyrophosp 98.7 1.2E-08 2.6E-13 75.3 4.1 77 5-81 90-168 (191)
67 cd04665 Nudix_Hydrolase_8 Memb 98.7 5.4E-08 1.2E-12 66.6 6.8 73 2-77 30-103 (118)
68 TIGR00052 nudix-type nucleosid 98.7 2.3E-08 4.9E-13 73.3 4.7 80 2-81 86-167 (185)
69 TIGR00586 mutt mutator mutT pr 98.7 9.1E-08 2E-12 64.3 7.1 73 3-82 41-116 (128)
70 cd03676 Nudix_hydrolase_3 Memb 98.7 3.5E-08 7.5E-13 71.3 5.2 78 2-81 74-160 (180)
71 TIGR02150 IPP_isom_1 isopenten 98.7 1.3E-08 2.7E-13 72.4 2.8 72 4-81 67-144 (158)
72 PRK08999 hypothetical protein; 98.6 1.2E-07 2.5E-12 73.6 7.4 96 2-103 41-137 (312)
73 PRK10707 putative NUDIX hydrol 98.6 5.9E-08 1.3E-12 71.5 5.4 74 5-80 73-147 (190)
74 cd03670 ADPRase_NUDT9 ADP-ribo 98.6 1.7E-07 3.7E-12 69.1 7.2 84 2-85 69-177 (186)
75 cd04663 Nudix_Hydrolase_6 Memb 98.6 4.3E-07 9.3E-12 63.2 8.1 74 2-78 33-115 (126)
76 cd04694 Nudix_Hydrolase_35 Mem 98.5 9.1E-08 2E-12 67.4 4.2 78 3-81 39-133 (143)
77 PLN02552 isopentenyl-diphospha 98.5 8.2E-08 1.8E-12 73.6 3.5 73 7-81 116-205 (247)
78 PLN03143 nudix hydrolase; Prov 98.5 1.4E-07 2.9E-12 73.9 4.7 86 1-86 166-272 (291)
79 cd04674 Nudix_Hydrolase_16 Mem 98.5 1E-06 2.2E-11 60.5 8.4 77 2-81 38-115 (118)
80 COG0494 MutT NTP pyrophosphohy 98.5 4.3E-07 9.3E-12 60.0 5.8 80 3-82 46-137 (161)
81 TIGR02705 nudix_YtkD nucleosid 98.4 6.7E-07 1.5E-11 64.3 5.8 74 2-81 54-129 (156)
82 PLN02709 nudix hydrolase 98.3 1.2E-06 2.7E-11 66.2 5.0 74 5-81 80-157 (222)
83 KOG3041|consensus 98.0 1.4E-05 3.1E-10 59.7 5.0 82 1-82 111-197 (225)
84 KOG2839|consensus 97.9 1E-05 2.3E-10 57.4 2.7 77 2-79 45-125 (145)
85 PLN02791 Nudix hydrolase homol 97.8 3.5E-05 7.5E-10 67.2 5.3 77 3-80 72-159 (770)
86 KOG3084|consensus 97.5 6.1E-05 1.3E-09 59.7 2.8 26 2-27 222-247 (345)
87 KOG0648|consensus 97.3 3E-05 6.5E-10 60.8 -1.6 75 2-77 152-229 (295)
88 COG4119 Predicted NTP pyrophos 96.9 0.0012 2.6E-08 46.5 3.7 74 3-79 46-135 (161)
89 KOG3069|consensus 96.9 0.00085 1.9E-08 51.3 3.1 76 4-83 86-167 (246)
90 PLN02839 nudix hydrolase 96.8 0.0015 3.3E-08 52.8 4.2 74 5-79 247-327 (372)
91 COG1443 Idi Isopentenyldiphosp 96.1 0.0049 1.1E-07 45.4 2.7 76 4-81 73-155 (185)
92 KOG4432|consensus 89.2 1 2.3E-05 36.1 5.4 100 3-108 294-399 (405)
93 KOG4432|consensus 86.2 0.96 2.1E-05 36.3 3.5 46 3-48 89-137 (405)
94 cd03431 DNA_Glycosylase_C DNA 83.5 3.9 8.5E-05 26.1 5.1 66 5-81 41-107 (118)
95 KOG0142|consensus 83.4 0.7 1.5E-05 34.9 1.6 70 7-81 104-185 (225)
96 COG4112 Predicted phosphoester 63.8 7.6 0.00016 28.6 2.7 63 12-78 117-186 (203)
97 PF14443 DBC1: DBC1 59.5 21 0.00045 24.9 4.2 20 7-26 41-60 (126)
98 PF14044 NETI: NETI protein 44.9 16 0.00035 22.1 1.5 23 2-26 4-26 (57)
99 PF14815 NUDIX_4: NUDIX domain 43.5 56 0.0012 21.0 4.2 67 8-81 38-105 (114)
100 COG5353 Uncharacterized protei 31.7 2E+02 0.0044 20.8 5.9 25 2-26 31-55 (161)
101 PF13680 DUF4152: Protein of u 31.3 26 0.00055 26.2 1.1 22 5-26 112-133 (227)
102 PF13014 KH_3: KH domain 30.7 40 0.00087 18.2 1.6 16 11-26 11-26 (43)
103 COG1707 ACT domain-containing 29.2 42 0.00092 25.0 1.9 18 10-27 157-174 (218)
104 PF04275 P-mevalo_kinase: Phos 27.5 34 0.00073 23.5 1.1 28 6-33 28-55 (116)
105 KOG2937|consensus 25.0 20 0.00044 29.0 -0.4 71 6-80 206-277 (348)
106 KOG3904|consensus 24.8 38 0.00083 25.6 1.0 17 9-25 26-42 (209)
107 cd02393 PNPase_KH Polynucleoti 23.6 62 0.0013 19.0 1.6 15 11-25 22-36 (61)
108 PF08053 Tna_leader: Tryptopha 23.3 50 0.0011 16.1 0.9 8 68-75 10-17 (24)
109 PRK09806 tryptophanase leader 20.8 60 0.0013 16.1 0.9 8 68-75 10-17 (26)
No 1
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.73 E-value=1.1e-17 Score=118.06 Aligned_cols=105 Identities=38% Similarity=0.681 Sum_probs=77.7
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCch
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSRK 81 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~~ 81 (114)
.+..||+.+||+||++||||+++..+.....|......++.+++|++..+.......+...+|+.+++||++++++.+..
T Consensus 34 ve~gEs~~~AA~REl~EETGl~v~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~ 113 (145)
T cd03672 34 INKDEDDHDCAIREVYEETGFDISKYIDKDDYIELIIRGQNVKLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKN 113 (145)
T ss_pred CCCCcCHHHHHHHHHHHhhCccceeccccceeeecccCCcEEEEEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhh
Confidence 47789999999999999999999875433344443334556777877766544333444567999999999999998776
Q ss_pred hhhhhhccCCCCCCCceEEEccchHhHHhhc
Q psy13065 82 EIKTVLINGTPVGTNAFFMIMPFINSINIAG 112 (114)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (114)
.. +. -..+.+|.++.||+-||+=|.
T Consensus 114 ~~----~~--~~~~~~~~~~~~~~~~~~~~~ 138 (145)
T cd03672 114 KK----IP--GLNSNKFFMVIPFIKPLKKWI 138 (145)
T ss_pred hc----cc--cccccceEEEhHHHHHHHHHH
Confidence 22 11 135789999999999998773
No 2
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.38 E-value=1.2e-12 Score=88.60 Aligned_cols=84 Identities=13% Similarity=0.164 Sum_probs=54.7
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeEE-EEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQLT-RLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS 78 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~~-~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~ 78 (114)
++..||+.+||+||++||||+++.. ++....+.......+.+ .+|++....+. ......+|+.+++||++++++.
T Consensus 37 ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~E~~~~~W~~~~~l~~ 114 (125)
T cd04679 37 VDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEPPQHWVAPVYLAENFSGE--PRLMEPDKLLELGWFALDALPQ 114 (125)
T ss_pred ccCCCCHHHHHHHHHHHHHCCCcccceEEEEEeecccCCCCeEEEEEEEEeecCCc--cccCCCccccEEEEeCHHHCCc
Confidence 4678999999999999999999874 33322221122233433 34554433222 1223346899999999999998
Q ss_pred Cchhhhhhh
Q psy13065 79 SRKEIKTVL 87 (114)
Q Consensus 79 ~~~~~~~~~ 87 (114)
...+.++..
T Consensus 115 ~l~~~~~~~ 123 (125)
T cd04679 115 PLTRATRDA 123 (125)
T ss_pred hhHHHHHHH
Confidence 777766654
No 3
>KOG2937|consensus
Probab=99.34 E-value=2.8e-13 Score=106.53 Aligned_cols=107 Identities=28% Similarity=0.419 Sum_probs=88.3
Q ss_pred ccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCchh
Q psy13065 3 EEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSRKE 82 (114)
Q Consensus 3 ~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~~~ 82 (114)
.+.|+..+||+|||.||||.|++..+..+.|+.....++.+.+|++.++..++.+.|+.+.||+.+.|+.++++-.-...
T Consensus 116 ~kdesd~~caiReV~eetgfD~skql~~~e~Ie~nI~dq~~~~fIi~gvs~d~~f~~~v~~eis~ihW~~l~~l~~t~~~ 195 (348)
T KOG2937|consen 116 SKDESDSDCAIREVTEETGFDYSKQLQDNEGIETNIRDQLVRLFIINGVSEDTNFNPRVRKEISKIHWHYLDHLVPTDKK 195 (348)
T ss_pred cccchhhhcchhcccchhhcCHHHHhccccCcccchhhceeeeeeeccceeeeecchhhhccccceeeeehhhhcccccc
Confidence 35688999999999999999999988788888888889999999999999999999999999999999999998433332
Q ss_pred hhhhhccCCCCCCCceEEEccchHhHHhhcc
Q psy13065 83 IKTVLINGTPVGTNAFFMIMPFINSINIAGK 113 (114)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (114)
-.++. ..+..++||+.||+++|+=|+.
T Consensus 196 s~~k~----~~~~dk~~~~~~~l~vlkk~~~ 222 (348)
T KOG2937|consen 196 SGPKG----VKSRDKNYMVCPFLRVLKKWIL 222 (348)
T ss_pred cCCCc----cccchhhcccchHHHHHHHHHH
Confidence 22221 2223688999999999998763
No 4
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.32 E-value=4.8e-12 Score=84.49 Aligned_cols=83 Identities=14% Similarity=0.127 Sum_probs=54.4
Q ss_pred cccCCCHHHHHHHHhhhhhCceee-eeeecceeeeec-cCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSS-HLIAEDSYLETT-YNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSS 79 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~-~li~~~~y~~~~-~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~ 79 (114)
++..||+.+||+||++||||+++. .......+.... .....+.+|.+....... ....+|+.+++||+++++|..
T Consensus 32 ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~---~~~~~E~~~~~w~~~~~l~~~ 108 (120)
T cd04680 32 LERGETFAEAARRELLEELGIRLAVVAELLGVYYHSASGSWDHVIVFRARADTQPV---IRPSHEISEARFFPPDALPEP 108 (120)
T ss_pred CCCCCCHHHHHHHHHHHHHCCccccccceEEEEecCCCCCceEEEEEEecccCCCc---cCCcccEEEEEEECHHHCccc
Confidence 467899999999999999999998 422111222111 123445556665433221 234579999999999999987
Q ss_pred chhhhhhh
Q psy13065 80 RKEIKTVL 87 (114)
Q Consensus 80 ~~~~~~~~ 87 (114)
..+..+..
T Consensus 109 ~~~~~~~~ 116 (120)
T cd04680 109 TTPATRRR 116 (120)
T ss_pred CChHHHHH
Confidence 66555443
No 5
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.31 E-value=4.7e-12 Score=88.46 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=52.2
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCe--EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQ--LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSS 79 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~--~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~ 79 (114)
++..||+.+||+||++||||+++........|......+. ..++|++..... ...+...+|+.+++||++++++.+
T Consensus 48 ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~E~~~~~w~~~~el~~~ 125 (142)
T cd04700 48 VEDGEFPQDAAVREACEETGLRVRPVKFLGTYLGRFDDGVLVLRHVWLAEPEGQ--TLAPKFTDEIAEASFFSREDVAQL 125 (142)
T ss_pred cCCCCCHHHHHHHHHHHhhCceeeccEEEEEEEEEcCCCcEEEEEEEEEEecCC--ccccCCCCCEEEEEEECHHHhhhc
Confidence 5789999999999999999999975321122322222232 234555543322 233444579999999999999987
Q ss_pred ch
Q psy13065 80 RK 81 (114)
Q Consensus 80 ~~ 81 (114)
..
T Consensus 126 ~~ 127 (142)
T cd04700 126 YA 127 (142)
T ss_pred cc
Confidence 75
No 6
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.29 E-value=5.3e-12 Score=85.27 Aligned_cols=78 Identities=18% Similarity=0.127 Sum_probs=51.2
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCch
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSRK 81 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~~ 81 (114)
++..||+.+||+||++||||+++..+.....+.........+.+|.+....+ .+. .+|+.++.||+++++|.++.
T Consensus 36 ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~E~~~~~W~~~~~l~~~~~ 110 (117)
T cd04691 36 IEAGESQEEALLREVQEELGVDPLSYTYLCSLYHPTSELQLLHYYVVTFWQG----EIP-AQEAAEVHWMTANDIVLASE 110 (117)
T ss_pred ecCCCCHHHHHHHHHHHHHCCCcccceEEEEEeccCCCeEEEEEEEEEEecC----CCC-cccccccEEcCHHHcchhhh
Confidence 5788999999999999999999754221111211111233455566554322 222 37999999999999998776
Q ss_pred hhh
Q psy13065 82 EIK 84 (114)
Q Consensus 82 ~~~ 84 (114)
..+
T Consensus 111 ~~~ 113 (117)
T cd04691 111 ADR 113 (117)
T ss_pred hHH
Confidence 443
No 7
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.25 E-value=1.9e-11 Score=81.98 Aligned_cols=80 Identities=15% Similarity=0.204 Sum_probs=49.7
Q ss_pred cccCCCHHHHHHHHhhhhhCceee--eeeecceeeeecc-CCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSS--HLIAEDSYLETTY-NDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS 78 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~--~li~~~~y~~~~~-~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~ 78 (114)
++..||+.+||+||++||||+++. .+.....+..... ..+.+.+|+.+....+ .......+|+.+++|+++++||.
T Consensus 35 ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~e~~~~~W~~~~~l~~ 113 (120)
T cd04683 35 LEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDIESRIGLFFTVRRWSG-EPRNCEPDKCAELRWFPLDALPD 113 (120)
T ss_pred cCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecCCCCceEEEEEEEEEeecC-ccccCCCCcEeeEEEEchHHCcc
Confidence 467899999999999999999987 3321112222111 1344444444432211 11122346899999999999997
Q ss_pred Cchh
Q psy13065 79 SRKE 82 (114)
Q Consensus 79 ~~~~ 82 (114)
...+
T Consensus 114 ~~~~ 117 (120)
T cd04683 114 DTVD 117 (120)
T ss_pred hhcc
Confidence 6643
No 8
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.24 E-value=3.2e-11 Score=81.92 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=50.5
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeee--eecceeeeeccCCeEEEEEEEeccCCCC-ccCcCCcCcccceEEEeCCCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHL--IAEDSYLETTYNDQLTRLYLIPGVPIDF-KFAPQTRGEIKACQWFPIGDLPS 78 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~l--i~~~~y~~~~~~~~~~~lfv~~~~~~~~-~~~p~~~~EI~~i~Wf~id~lp~ 78 (114)
.+..||+.+||+||++||||+++..+ +............+.+.+|+.+...... .......+|+.+++|+++++|+.
T Consensus 37 ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~ 116 (129)
T cd04678 37 LEFGESFEECAAREVLEETGLHIENVQFLTVTNDVFEEEGKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPS 116 (129)
T ss_pred ccCCCCHHHHHHHHHHHHhCCcccceEEEEEEeEEeCCCCcEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCC
Confidence 46789999999999999999998752 2211111112233445555544443221 11111346889999999999998
Q ss_pred Cchh
Q psy13065 79 SRKE 82 (114)
Q Consensus 79 ~~~~ 82 (114)
+...
T Consensus 117 ~~~~ 120 (129)
T cd04678 117 VDPL 120 (129)
T ss_pred cchh
Confidence 7443
No 9
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.24 E-value=2.8e-11 Score=82.84 Aligned_cols=75 Identities=23% Similarity=0.224 Sum_probs=47.9
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSS 79 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~ 79 (114)
++..||+.+||+||++||||+++.. ++.. ..........+|.+...++.....+.+.+|+.+++||+++++|..
T Consensus 35 ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~----~~~~~~~~~~~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el~~~ 110 (123)
T cd04671 35 MEPGETIEEAVKREVKEETGLDCEPTTLLSV----EEQGGSWFRFVFTGNITGGDLKTEKEADSESLQARWYSNKDLPLP 110 (123)
T ss_pred cCCCCCHHHHHHHHHHHHHCCeeecceEEEE----EccCCeEEEEEEEEEEeCCeEccCCCCCcceEEEEEECHHHCCCc
Confidence 4778999999999999999999975 2221 111122233445444333322222234568899999999999644
Q ss_pred c
Q psy13065 80 R 80 (114)
Q Consensus 80 ~ 80 (114)
.
T Consensus 111 ~ 111 (123)
T cd04671 111 L 111 (123)
T ss_pred c
Confidence 3
No 10
>PLN02325 nudix hydrolase
Probab=99.22 E-value=4e-11 Score=84.24 Aligned_cols=86 Identities=14% Similarity=0.085 Sum_probs=53.1
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee--eeecceeeee--ccCCeEEEEEEEeccCCC-CccCcCCcCcccceEEEeCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLET--TYNDQLTRLYLIPGVPID-FKFAPQTRGEIKACQWFPIGDL 76 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~--~~~~~~~~lfv~~~~~~~-~~~~p~~~~EI~~i~Wf~id~l 76 (114)
++..||+.+||+||++||||+++.. ++....+... ....+.+.+|+.+..... ........+|+.+++||++++|
T Consensus 43 ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~L 122 (144)
T PLN02325 43 LEFGESFEECAAREVKEETGLEIEKIELLTVTNNVFLEEPKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNL 122 (144)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCcceEEEEEecceeecCCCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHC
Confidence 4778999999999999999999875 3432222111 112344444444332211 1111223456789999999999
Q ss_pred CCCchhhhhhh
Q psy13065 77 PSSRKEIKTVL 87 (114)
Q Consensus 77 p~~~~~~~~~~ 87 (114)
|.......+..
T Consensus 123 p~~~~~p~~~~ 133 (144)
T PLN02325 123 PEPLFWPLEKL 133 (144)
T ss_pred ChhhhHHHHHH
Confidence 98666555544
No 11
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.22 E-value=4.1e-11 Score=82.02 Aligned_cols=75 Identities=20% Similarity=0.235 Sum_probs=46.9
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCe-EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS 78 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~ 78 (114)
++..||+.+||+||++||||+++.. +++...+........ ...+|++....+ .+...+|..+++|+++++++.
T Consensus 35 ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~e~~~~~W~~~~el~~ 110 (137)
T cd03427 35 VEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVFVFLATEFEG----EPLKESEEGILDWFDIDDLPL 110 (137)
T ss_pred CCCCCCHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCCCcEEEEEEEEECCccc----ccCCCCccccceEEcHhhccc
Confidence 4678999999999999999999985 232222221111122 234444433322 222345668999999999986
Q ss_pred Cc
Q psy13065 79 SR 80 (114)
Q Consensus 79 ~~ 80 (114)
+.
T Consensus 111 ~~ 112 (137)
T cd03427 111 LP 112 (137)
T ss_pred cc
Confidence 53
No 12
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.21 E-value=5.8e-11 Score=79.78 Aligned_cols=77 Identities=16% Similarity=0.158 Sum_probs=47.9
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCC----eE-EEEEEEeccCCCCccCcCCcCcccceEEEeCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYND----QL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIG 74 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~----~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id 74 (114)
.+..||+.+||+||++||||+++.. +++...+....... +. ..+|.+........ .....+|+.++.|++++
T Consensus 34 ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~e~~~~~W~~~~ 112 (128)
T cd04684 34 IEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGDYDAHHLCVFYDARVVGGALP-VQEPGEDSHGAAWLPLD 112 (128)
T ss_pred cCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCCeeccEEEEEEEEEEecCccc-cCCCCCCceeeEEECHH
Confidence 4678999999999999999999875 33332222221111 22 34444433222110 12235688999999999
Q ss_pred CCCCC
Q psy13065 75 DLPSS 79 (114)
Q Consensus 75 ~lp~~ 79 (114)
+++..
T Consensus 113 ~l~~~ 117 (128)
T cd04684 113 EAIER 117 (128)
T ss_pred Hhhcc
Confidence 99844
No 13
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.19 E-value=3.8e-11 Score=82.93 Aligned_cols=84 Identities=8% Similarity=-0.034 Sum_probs=54.0
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee-eee--c-ceeeeeccC--------CeEEEEEEEeccCCCCccCcCCcCcccceE
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH-LIA--E-DSYLETTYN--------DQLTRLYLIPGVPIDFKFAPQTRGEIKACQ 69 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~-li~--~-~~y~~~~~~--------~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~ 69 (114)
++..||+.+||+||++||||+++.. +++ + ..+...+.+ +..+.+|.+....+ .+...+|+.+++
T Consensus 35 ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g----~~~~~~e~~~~~ 110 (132)
T cd04661 35 REEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVRNEGIVGAKVFFFKARYMSG----QFELSQNQVDFK 110 (132)
T ss_pred ccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccccccCcccEEEEEEEEEecC----ccccCCCcceeE
Confidence 5789999999999999999998775 332 1 122222211 12344454544433 223347899999
Q ss_pred EEeCCCCCCCchhhhhhhcc
Q psy13065 70 WFPIGDLPSSRKEIKTVLIN 89 (114)
Q Consensus 70 Wf~id~lp~~~~~~~~~~~~ 89 (114)
|+++++|+.+....-=+.++
T Consensus 111 W~~~~el~~~l~~~~~~~~~ 130 (132)
T cd04661 111 WLAKEELQKYLNPPYLQSVK 130 (132)
T ss_pred ecCHHHHHhhcCHHHHHHHh
Confidence 99999999876544444443
No 14
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.19 E-value=7e-11 Score=79.97 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=47.4
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccC--CeE-EEEEEEeccCCCCccCcCCcCcccceEEEeCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYN--DQL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDL 76 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~--~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~l 76 (114)
.+..||+.+||+||++||||+++.. ++....+...... .+. ..+|.+..............+|+.+++|++++++
T Consensus 32 ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el 111 (125)
T cd04689 32 VEPGETAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTHEINHIFAVESSWLASDGPPQADEDHLSFSWVPVSDL 111 (125)
T ss_pred CCCCCCHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEEEEEEEEEEEcccccccCCccCccceEEEEEccHHHc
Confidence 3678999999999999999999875 3332222211111 222 3444444322211122334568999999999997
Q ss_pred CCC
Q psy13065 77 PSS 79 (114)
Q Consensus 77 p~~ 79 (114)
+..
T Consensus 112 ~~~ 114 (125)
T cd04689 112 SLY 114 (125)
T ss_pred ccC
Confidence 643
No 15
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.18 E-value=5e-11 Score=80.69 Aligned_cols=83 Identities=22% Similarity=0.210 Sum_probs=51.9
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee--eeecceeee-ec--cCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLE-TT--YNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDL 76 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~-~~--~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~l 76 (114)
.+..||+.+||+||++||||+++.. +++...... .. ...+.+.+++.+..... .++..+|+.+++||+++++
T Consensus 33 ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~E~~~~~W~~~~el 109 (123)
T cd04672 33 ADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPPQPYQVYKLFFLCEILGG---EFKPNIETSEVGFFALDDL 109 (123)
T ss_pred cCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEeccccccCCCCceEEEEEEEEEEecCC---cccCCCceeeeEEECHHHC
Confidence 3567999999999999999999853 332111111 11 11123333444443221 2233479999999999999
Q ss_pred CCCchhhhhhh
Q psy13065 77 PSSRKEIKTVL 87 (114)
Q Consensus 77 p~~~~~~~~~~ 87 (114)
+.+.....+-+
T Consensus 110 ~~l~~~~~~~~ 120 (123)
T cd04672 110 PPLSEKRNTEE 120 (123)
T ss_pred cccccCCcchh
Confidence 99887655544
No 16
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.18 E-value=1.4e-11 Score=87.40 Aligned_cols=78 Identities=10% Similarity=0.054 Sum_probs=49.4
Q ss_pred cccC-CCHHHHHHHHhhhhhCceeeee--eecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065 2 MEEI-MMNIISEAKQVLEETGFDSSHL--IAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS 78 (114)
Q Consensus 2 ~~~~-es~~eaAvREv~EETGl~v~~l--i~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~ 78 (114)
++.. ||+.+||+||++||||+++..+ +........ ..+..+.+|++.... .....+ ..+|+.++.|+++++++.
T Consensus 41 ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~-~~~~~v~~~~~~~~~-~~~~~~-~~~E~~~~~W~~~~el~~ 117 (157)
T cd03426 41 VDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYT-RSGFVVTPVVGLVPP-PLPLVL-NPDEVAEVFEVPLSFLLD 117 (157)
T ss_pred cCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCccc-cCCCEEEEEEEEECC-CCCCCC-CHHHhheeEEEcHHHHhC
Confidence 4667 9999999999999999998853 221111111 123344555543222 112222 235999999999999998
Q ss_pred Cchh
Q psy13065 79 SRKE 82 (114)
Q Consensus 79 ~~~~ 82 (114)
....
T Consensus 118 ~~~~ 121 (157)
T cd03426 118 PANP 121 (157)
T ss_pred cCCc
Confidence 7643
No 17
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.17 E-value=4.1e-11 Score=80.82 Aligned_cols=78 Identities=18% Similarity=0.288 Sum_probs=50.5
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeee--eecceeeeec---cCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHL--IAEDSYLETT---YNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDL 76 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~l--i~~~~y~~~~---~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~l 76 (114)
.+..||+.+||.||++||||+++... +....|.... .....+.+|.+...... ..+...+|+.+++|++++++
T Consensus 36 v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~E~~~~~W~~~~el 113 (131)
T cd03673 36 LEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSGKRVHKTVHWWLMRALGGE--FTPQPDEEVDEVRWLPPDEA 113 (131)
T ss_pred cCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEeccCCCCCcceEEEEEEEEEcCCC--cccCCCCcEEEEEEcCHHHH
Confidence 46789999999999999999998852 3322332221 12234555555433222 22224679999999999999
Q ss_pred CCCch
Q psy13065 77 PSSRK 81 (114)
Q Consensus 77 p~~~~ 81 (114)
+....
T Consensus 114 ~~~~~ 118 (131)
T cd03673 114 RDRLS 118 (131)
T ss_pred HHHcC
Confidence 86544
No 18
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.17 E-value=4.8e-11 Score=79.68 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=47.9
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeecc----CCeE-EEEEEEeccCCCCccCcCCcCcccceEEEeCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTY----NDQL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIG 74 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~----~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id 74 (114)
.+..||+.+||+||++||||+++.. ++....+..... ..+. ...|.+..... .....+|+.+++|++++
T Consensus 34 ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~E~~~~~w~~~~ 109 (122)
T cd04673 34 VELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGRVEFHYVLIDFLCRYLGG----EPVAGDDALDARWVPLD 109 (122)
T ss_pred cCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCCccceEEEEEEEEEEeCCC----cccCCcccceeEEECHH
Confidence 3678999999999999999999874 333222222111 1122 22333432221 22345799999999999
Q ss_pred CCCCCch
Q psy13065 75 DLPSSRK 81 (114)
Q Consensus 75 ~lp~~~~ 81 (114)
+++.+..
T Consensus 110 el~~~~~ 116 (122)
T cd04673 110 ELAALSL 116 (122)
T ss_pred HHhhCcC
Confidence 9987653
No 19
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.17 E-value=6.6e-11 Score=80.36 Aligned_cols=74 Identities=14% Similarity=0.194 Sum_probs=47.6
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeee--ee--cceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHL--IA--EDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLP 77 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~l--i~--~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp 77 (114)
++..||+.+||.||++||||+++..+ +. ...+.......+...+|+.+.+.... .....+|+.+++|+++++|+
T Consensus 36 ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~~W~~~~el~ 113 (130)
T cd04681 36 VDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGMEYDTLDLFFVCQVDDKP--IVKAPDDVAELKWVVPQDIE 113 (130)
T ss_pred ecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCCceeEEEEEEEEEEeCCCC--CcCChHHhheeEEecHHHCC
Confidence 46789999999999999999998752 22 12222111112334445555444321 12235799999999999996
No 20
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.16 E-value=8.2e-11 Score=80.04 Aligned_cols=80 Identities=13% Similarity=0.090 Sum_probs=48.9
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee--eeecceeeee------ccCCeEEEEEEEeccCCCCc--cCcCCcCcccceEEE
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLET------TYNDQLTRLYLIPGVPIDFK--FAPQTRGEIKACQWF 71 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~------~~~~~~~~lfv~~~~~~~~~--~~p~~~~EI~~i~Wf 71 (114)
++..||+.+||+||++||||+.+.. +.....|... ....+.+.+|+.+....+.. .......+..+++|+
T Consensus 34 ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~ 113 (128)
T cd04687 34 QEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELPGHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWL 113 (128)
T ss_pred cCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCCCceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEE
Confidence 4678999999999999999999874 3222222211 11234444444444332211 111233456799999
Q ss_pred eCCCCCCCch
Q psy13065 72 PIGDLPSSRK 81 (114)
Q Consensus 72 ~id~lp~~~~ 81 (114)
++++|+.+..
T Consensus 114 ~~~~l~~~~~ 123 (128)
T cd04687 114 KLKELGDIPL 123 (128)
T ss_pred cHHHhCcccc
Confidence 9999987764
No 21
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.15 E-value=5.6e-11 Score=80.65 Aligned_cols=79 Identities=22% Similarity=0.257 Sum_probs=46.7
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCeEEEEEEEeccCC-CCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPI-DFKFAPQTRGEIKACQWFPIGDLPSSR 80 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~~~~lfv~~~~~~-~~~~~p~~~~EI~~i~Wf~id~lp~~~ 80 (114)
.+..||+.+||+||++||||+++........+...........+|+.+.+.. ..... ...+|+.+++|+++++++...
T Consensus 36 ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~E~~~~~w~~~~el~~~~ 114 (127)
T cd04670 36 VDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHAHPGAFGKSDLYFICRLKPLSFDIN-FDTSEIAAAKWMPLEEYISQP 114 (127)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCcceeEEEEEEecCCCCcCceeEEEEEEEccCcCcCC-CChhhhheeEEEcHHHHhcch
Confidence 4678999999999999999999874211111111111112223333333321 11111 235689999999999997655
Q ss_pred h
Q psy13065 81 K 81 (114)
Q Consensus 81 ~ 81 (114)
.
T Consensus 115 ~ 115 (127)
T cd04670 115 I 115 (127)
T ss_pred h
Confidence 4
No 22
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.15 E-value=7.1e-11 Score=82.61 Aligned_cols=81 Identities=23% Similarity=0.379 Sum_probs=50.3
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee--eeec--c--eeeee------c----cCCeEEEEEEEeccC--CCCccCcCCcC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH--LIAE--D--SYLET------T----YNDQLTRLYLIPGVP--IDFKFAPQTRG 63 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~--li~~--~--~y~~~------~----~~~~~~~lfv~~~~~--~~~~~~p~~~~ 63 (114)
++..|++.+||+||++||||+++.. ++.. . .|... . ..++..++|++.... ......+.+.+
T Consensus 36 ~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 115 (147)
T cd03671 36 IDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHP 115 (147)
T ss_pred CCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeChhhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCC
Confidence 5678999999999999999999864 3321 1 12111 0 113344555543332 12222221357
Q ss_pred cccceEEEeCCCCCCCchh
Q psy13065 64 EIKACQWFPIGDLPSSRKE 82 (114)
Q Consensus 64 EI~~i~Wf~id~lp~~~~~ 82 (114)
|+.+++|+++++++.....
T Consensus 116 E~~~~~W~~~~el~~~~~~ 134 (147)
T cd03671 116 EFDEWRWVPLEELPDLIVP 134 (147)
T ss_pred CEeeEEeCCHHHHHHhchh
Confidence 9999999999999976653
No 23
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.14 E-value=1.5e-10 Score=78.43 Aligned_cols=78 Identities=18% Similarity=0.183 Sum_probs=48.1
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeecc--CCeE-EEEEEEeccCCCCccC-----cCCcCcccceEEE
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTY--NDQL-TRLYLIPGVPIDFKFA-----PQTRGEIKACQWF 71 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~--~~~~-~~lfv~~~~~~~~~~~-----p~~~~EI~~i~Wf 71 (114)
.+..||+.+||+||++||||+++.. ++.......... ..+. ..+|.+.. .++.... ..+.+|+.++.|+
T Consensus 32 ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~~e~~~~~W~ 110 (126)
T cd04688 32 IEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHEIEFYYLVTL-LDESLYQQDIEILEEEGEKIVFRWI 110 (126)
T ss_pred ccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEEEEEEEEEEe-CCCcccccccceeccCCCEEEEEEe
Confidence 4678999999999999999999875 332211111111 1233 34444443 3222111 1245789999999
Q ss_pred eCCCCCCCc
Q psy13065 72 PIGDLPSSR 80 (114)
Q Consensus 72 ~id~lp~~~ 80 (114)
+++++..+.
T Consensus 111 ~~~~l~~~~ 119 (126)
T cd04688 111 PIDELKEIK 119 (126)
T ss_pred eHHHcccCc
Confidence 999998553
No 24
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.14 E-value=5.8e-11 Score=80.28 Aligned_cols=76 Identities=13% Similarity=0.103 Sum_probs=49.7
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSS 79 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~ 79 (114)
++..||+.+||+||++||||+++.. +.....|... ......++|++...... ......+|+.+++|++++++...
T Consensus 38 ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~--~~~~~~~E~~~~~W~~~~el~~~ 114 (122)
T cd04682 38 REGGETPLECVLRELLEEIGLTLPESRIPWFRVYPSA-SPPGTEHVFVVPLTARE--DAILFGDEGQALRLMTVEEFLAH 114 (122)
T ss_pred ccCCCCHHHHHHHHHHHHhCCcccccccceeEecccC-CCCceEEEEEEEEecCC--CccccCchhheeecccHHHHhhc
Confidence 5778999999999999999999863 2111122211 12334555666544322 12234689999999999998655
Q ss_pred c
Q psy13065 80 R 80 (114)
Q Consensus 80 ~ 80 (114)
.
T Consensus 115 ~ 115 (122)
T cd04682 115 E 115 (122)
T ss_pred c
Confidence 4
No 25
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.14 E-value=1.7e-10 Score=78.33 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=46.6
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeEEEEEEEeccCCCCccC-c-----CCcCcccceEEEeC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQLTRLYLIPGVPIDFKFA-P-----QTRGEIKACQWFPI 73 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~-p-----~~~~EI~~i~Wf~i 73 (114)
.+..||+.+||+||++||||+++.. ++.. ..+ .+...++|.+....+..... + ...++..++.|+++
T Consensus 34 ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~----~~~-~~~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~ 108 (121)
T cd04669 34 IEEGETPEEAAKREALEELGLDVRVEEIFLI----VNQ-NGRTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDL 108 (121)
T ss_pred ccCCCCHHHHHHHHHHHhhCeeEeeeeEEEE----Eee-CCcEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEH
Confidence 4678999999999999999999964 2221 111 23334556555443221110 0 01235667999999
Q ss_pred CCCCCCc
Q psy13065 74 GDLPSSR 80 (114)
Q Consensus 74 d~lp~~~ 80 (114)
++||.+.
T Consensus 109 ~el~~l~ 115 (121)
T cd04669 109 DQLETIP 115 (121)
T ss_pred HHcccCC
Confidence 9999764
No 26
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.13 E-value=1.3e-10 Score=77.40 Aligned_cols=79 Identities=19% Similarity=0.322 Sum_probs=50.8
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCch
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSRK 81 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~~ 81 (114)
++..||+.+||.||++||||+++..+.....+ ........+|.+. +.... ..+..+|+.+++|+++++++.+..
T Consensus 30 ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~---~~~~~~~~~f~~~-~~~~~--~~~~~~e~~~~~W~~~~el~~~~~ 103 (112)
T cd04667 30 IEPGETPLQAARRELQEETGLQGLDLLYLFHV---DGGSTRHHVFVAS-VPPSA--QPKPSNEIADCRWLSLDALGDLNA 103 (112)
T ss_pred CCCCCCHHHHHHHHHHHHhCCcccceEEEEEE---eCCCEEEEEEEEE-cCCcC--CCCCchheeEEEEecHHHhhhccc
Confidence 46789999999999999999998653211111 1122333444443 32221 223457999999999999998766
Q ss_pred hhhhh
Q psy13065 82 EIKTV 86 (114)
Q Consensus 82 ~~~~~ 86 (114)
....+
T Consensus 104 ~~~~~ 108 (112)
T cd04667 104 SAATR 108 (112)
T ss_pred chhhh
Confidence 54433
No 27
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.13 E-value=5.7e-11 Score=80.52 Aligned_cols=75 Identities=11% Similarity=0.038 Sum_probs=46.7
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee--eeecceeeee-cc--CCeE-EEEEEEeccCCCCccCcCCcCcccceEEEeCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLET-TY--NDQL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGD 75 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~-~~--~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~ 75 (114)
++..||+.+||+||++||||+++.. ++....+... .. ..+. ...|.+.. .+ . .....+|+.+++||++++
T Consensus 35 ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~--~~~~~~e~~~~~W~~~~e 110 (125)
T cd04696 35 VEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFHKPAHFVLFDFFART-DG-T--EVTPNEEIVEWEWVTPEE 110 (125)
T ss_pred ccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCCCccEEEEEEEEEEe-cC-C--cccCCcccceeEEECHHH
Confidence 4668999999999999999999874 3322222211 11 1222 22233332 21 1 223457999999999999
Q ss_pred CCCCc
Q psy13065 76 LPSSR 80 (114)
Q Consensus 76 lp~~~ 80 (114)
++.+.
T Consensus 111 l~~~~ 115 (125)
T cd04696 111 ALDYP 115 (125)
T ss_pred HhcCC
Confidence 87764
No 28
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.13 E-value=1.2e-10 Score=81.73 Aligned_cols=77 Identities=9% Similarity=0.065 Sum_probs=48.1
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee----eeecceeeee------ccCCeEEEEEEEeccCCCCccCcCCcCcccceEEE
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH----LIAEDSYLET------TYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWF 71 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~----li~~~~y~~~------~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf 71 (114)
++..||+.+||+||++||||+++.. ++....+... ....+.+.+++.+....+.. ....+|+.+++||
T Consensus 47 ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~~~W~ 124 (144)
T cd03430 47 IRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDDNFFGDDFSTHYVVLGYVLKLSSNEL--LLPDEQHSEYQWL 124 (144)
T ss_pred ecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEEEEeccccccCCCccEEEEEEEEEEEcCCcc--cCCchhccEeEEe
Confidence 5778999999999999999999873 3332211111 11123333333333322211 2345799999999
Q ss_pred eCCCCCCCc
Q psy13065 72 PIGDLPSSR 80 (114)
Q Consensus 72 ~id~lp~~~ 80 (114)
++++++...
T Consensus 125 ~~~el~~~~ 133 (144)
T cd03430 125 TSDELLADD 133 (144)
T ss_pred cHHHHhcCC
Confidence 999998653
No 29
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.12 E-value=1.3e-10 Score=79.36 Aligned_cols=78 Identities=13% Similarity=0.186 Sum_probs=49.0
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeE-EEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS 78 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~ 78 (114)
++..||+.+||.||++||||+++.. ++....+......... ..+|++. +.... ......+|+.++.|+++++++.
T Consensus 33 ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~~~-~~~~~~~e~~~~~w~~~~el~~ 110 (134)
T cd03675 33 LEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLRFAFAAE-LLEHL-PDQPLDSGIVRAHWLTLEEILA 110 (134)
T ss_pred CCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeecCCCCeeEEEEEEEEE-ECCCC-CCCCCCCCceeeEEEeHHHHHh
Confidence 4678999999999999999999975 3332222211111222 2334443 22221 1222346899999999999998
Q ss_pred Cch
Q psy13065 79 SRK 81 (114)
Q Consensus 79 ~~~ 81 (114)
+..
T Consensus 111 ~~~ 113 (134)
T cd03675 111 LAA 113 (134)
T ss_pred hhh
Confidence 874
No 30
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.11 E-value=5.3e-11 Score=81.59 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=50.7
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeeeeecceeee-eccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLE-TTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR 80 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~-~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~ 80 (114)
++..||+.+||+||++||||+++..+.....+.. .......+.+|++......... ....+|+.+++|++++++..+.
T Consensus 38 ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~E~~~~~w~~~~el~~~~ 116 (137)
T cd03424 38 IDPGEDPEEAARRELEEETGYEAGDLEKLGSFYPSPGFSDERIHLFLAEDLSPGEEG-LLDEGEDIEVVLVPLDEALELL 116 (137)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCccceEEEeeEecCCcccCccEEEEEEEcccccccC-CCCCCCeeEEEEecHHHHHHHH
Confidence 4678999999999999999999974322222221 1112234555655433222111 2235689999999999998766
Q ss_pred h
Q psy13065 81 K 81 (114)
Q Consensus 81 ~ 81 (114)
.
T Consensus 117 ~ 117 (137)
T cd03424 117 A 117 (137)
T ss_pred H
Confidence 5
No 31
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.10 E-value=2.7e-10 Score=78.89 Aligned_cols=76 Identities=21% Similarity=0.244 Sum_probs=46.5
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeeeeec-----ceeeee--cc-----CCeE-EEEEEEeccCCCCccCcCCcCcccce
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHLIAE-----DSYLET--TY-----NDQL-TRLYLIPGVPIDFKFAPQTRGEIKAC 68 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~li~~-----~~y~~~--~~-----~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i 68 (114)
++..||+.+||+||++||||+++..+... ..+... .. ...+ ...|++....+. ..+...+|+.++
T Consensus 35 ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~--~~~~~~~E~~~~ 112 (138)
T cd03674 35 IDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGHPKRGVPGHLHLDLRFLAVAPADD--VAPPKSDESDAV 112 (138)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCcccceeccccccceeEeecCCCCCCCCCcEEEEEEEEEEccCcc--ccCCCCCccccc
Confidence 56789999999999999999987642111 111111 11 1222 233555432222 122245799999
Q ss_pred EEEeCCCCCCC
Q psy13065 69 QWFPIGDLPSS 79 (114)
Q Consensus 69 ~Wf~id~lp~~ 79 (114)
+|+++++++.+
T Consensus 113 ~W~~~~el~~~ 123 (138)
T cd03674 113 RWFPLDELASL 123 (138)
T ss_pred EEEcHHHhhhc
Confidence 99999999544
No 32
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.08 E-value=2e-10 Score=82.52 Aligned_cols=77 Identities=8% Similarity=0.074 Sum_probs=47.2
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee----eeeccee-eeecc-----CCeEEE-EEEEeccCCCCccCcCCcCcccceEE
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH----LIAEDSY-LETTY-----NDQLTR-LYLIPGVPIDFKFAPQTRGEIKACQW 70 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~----li~~~~y-~~~~~-----~~~~~~-lfv~~~~~~~~~~~p~~~~EI~~i~W 70 (114)
++..||+.+||+||++||||+++.. +++...+ ...+. ..+.+. +|.+. ...+. . ....+|+.+++|
T Consensus 52 VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~-~~~g~-~-~~~~~E~~~~~W 128 (159)
T PRK15434 52 VQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRLR-VAEED-L-LLPDEQHDDYRW 128 (159)
T ss_pred cCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEeecccccCCCccceEEEEEEEEEE-ecCCc-c-cCChHHeeEEEE
Confidence 5788999999999999999999742 3332111 11111 113333 33343 32221 1 223468999999
Q ss_pred EeCCCCCCCch
Q psy13065 71 FPIGDLPSSRK 81 (114)
Q Consensus 71 f~id~lp~~~~ 81 (114)
+++++++....
T Consensus 129 ~~~~el~~~~~ 139 (159)
T PRK15434 129 LTPDALLASDN 139 (159)
T ss_pred EeHHHhhhccc
Confidence 99999987543
No 33
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.08 E-value=4.8e-10 Score=76.00 Aligned_cols=79 Identities=20% Similarity=0.276 Sum_probs=50.2
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee--eeec---ceeeeeccCC---eEEEEEEEeccCCCCccCcCCcCcccceEEEeC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH--LIAE---DSYLETTYND---QLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI 73 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~--li~~---~~y~~~~~~~---~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~i 73 (114)
.+..||+.+||+||++||||+++.. ++.. ..+.....++ ....+|+++..... .. ....+|+.+++||++
T Consensus 39 v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~e~~~~~W~~~ 116 (132)
T cd04677 39 MELGESLEETARRELKEETGLEVEELELLGVYSGKEFYVKPNGDDEQYIVTLYYVTKVFGG-KL-VPDGDETLELKFFSL 116 (132)
T ss_pred cCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCceeecCCCCcEEEEEEEEEEEeccCC-cc-cCCCCceeeEEEECh
Confidence 3678999999999999999999985 2211 1111111122 23444554433221 11 224579999999999
Q ss_pred CCCCCCchh
Q psy13065 74 GDLPSSRKE 82 (114)
Q Consensus 74 d~lp~~~~~ 82 (114)
++++.+...
T Consensus 117 ~e~~~~~~~ 125 (132)
T cd04677 117 DELPELINP 125 (132)
T ss_pred hHCccchhH
Confidence 999987654
No 34
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.08 E-value=2.7e-10 Score=76.03 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=46.3
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee--eeecceeeee---ccCC-eEEEEEEEeccCCCCccCcCCcCcccceEEEeCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLET---TYND-QLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGD 75 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~---~~~~-~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~ 75 (114)
++..||+.+||+||++||||+++.. +.....+... ..+. ....+|.+. ... .+...+|+.+++|+++++
T Consensus 32 ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~----~~~~~~e~~~~~W~~~~e 106 (118)
T cd04690 32 IEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDVRATVYVAE-LTG----EPVPAAEIEEIRWVDYDD 106 (118)
T ss_pred cCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEEEEEEEEEc-ccC----CcCCCchhhccEEecHHH
Confidence 4678999999999999999998875 4322222211 1111 234445443 222 233457999999999999
Q ss_pred CCC
Q psy13065 76 LPS 78 (114)
Q Consensus 76 lp~ 78 (114)
++.
T Consensus 107 ~~~ 109 (118)
T cd04690 107 PAD 109 (118)
T ss_pred ccc
Confidence 743
No 35
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.08 E-value=1.3e-10 Score=80.98 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=49.0
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeec------cCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETT------YNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI 73 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~------~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~i 73 (114)
++..||+.+||+||++||||+++.. +.....+.... .......+|++..........+ ..+|+.+++|+++
T Consensus 43 ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~E~~~~~W~~~ 121 (144)
T cd04692 43 ILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEYDHIGKLIDREFHHVYLYELKVPLEEFTL-QKEEVAGVVLIPL 121 (144)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEEEEeccccCCCccceEEEEEEEeccCChhhcCC-ChhHhheEEEECH
Confidence 4678999999999999999998752 32111221111 1123345566654321111222 3479999999999
Q ss_pred CCCCCCch
Q psy13065 74 GDLPSSRK 81 (114)
Q Consensus 74 d~lp~~~~ 81 (114)
+++..+..
T Consensus 122 ~el~~~~~ 129 (144)
T cd04692 122 DEFAELLE 129 (144)
T ss_pred HHHHHHHH
Confidence 99976664
No 36
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.07 E-value=1e-10 Score=79.44 Aligned_cols=76 Identities=14% Similarity=0.155 Sum_probs=46.6
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSS 79 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~ 79 (114)
.+..||+ +||+||++||||+++.. +.....|...........+|..+ .... ...+ ..+|+.+++|+++++++.+
T Consensus 38 ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~-~~~E~~~~~w~~~~el~~~ 113 (127)
T cd04693 38 VQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAEGFDDYYLFYAD-VEIG-KLIL-QKEEVDEVKFVSKDEIDGL 113 (127)
T ss_pred CCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecCCeEEEEEEEec-Cccc-cccc-CHHHhhhEEEeCHHHHHHH
Confidence 4678999 99999999999999863 32222332221111222333332 2111 1112 3469999999999999877
Q ss_pred ch
Q psy13065 80 RK 81 (114)
Q Consensus 80 ~~ 81 (114)
..
T Consensus 114 ~~ 115 (127)
T cd04693 114 IG 115 (127)
T ss_pred Hh
Confidence 64
No 37
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.06 E-value=3.6e-10 Score=86.71 Aligned_cols=77 Identities=21% Similarity=0.164 Sum_probs=51.0
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCch
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSRK 81 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~~ 81 (114)
++..||+++||+|||+||||+++..+.....+... .....+..|.+....+. ..+ ..+|+.+++||+++++|.+..
T Consensus 165 vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~~~~-~p~~lm~~f~a~~~~~~--~~~-~~~Ei~~a~W~~~del~~lp~ 240 (256)
T PRK00241 165 VEVGETLEQCVAREVMEESGIKVKNLRYVGSQPWP-FPHSLMLGFHADYDSGE--IVF-DPKEIADAQWFRYDELPLLPP 240 (256)
T ss_pred CCCCCCHHHHhhhhhhhccCceeeeeEEEEeEeec-CCCeEEEEEEEEecCCc--ccC-CcccEEEEEEECHHHCcccCC
Confidence 46789999999999999999999863211111111 12344555666543222 222 346999999999999998765
Q ss_pred h
Q psy13065 82 E 82 (114)
Q Consensus 82 ~ 82 (114)
+
T Consensus 241 ~ 241 (256)
T PRK00241 241 S 241 (256)
T ss_pred c
Confidence 4
No 38
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.06 E-value=2.9e-10 Score=80.39 Aligned_cols=78 Identities=17% Similarity=0.188 Sum_probs=50.4
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeEE-EEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQLT-RLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS 78 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~~-~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~ 78 (114)
+|..||+.+||.||++|||||++.. ++...+...+...++++ .+|+++...+. ..+.+.++..+++||++++||.
T Consensus 44 ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~~~~rd~r~~~v~~~~~~~~~~g~--~~~~~~~d~~~~~~~~~~~l~~ 121 (145)
T COG1051 44 VEIGETLEEAARRELKEETGLRVRVLELLAVFDDPGRDPRGHHVSFLFFAAEPEGE--LLAGDGDDAAEVGWFPLDELPE 121 (145)
T ss_pred CCCCCCHHHHHHHHHHHHhCCcccceeEEEEecCCCCCCceeEEEEEEEEEecCCC--cccCChhhHhhcceecHhHccc
Confidence 5778999999999999999999864 33222222222334443 33444433222 2333345889999999999997
Q ss_pred Cch
Q psy13065 79 SRK 81 (114)
Q Consensus 79 ~~~ 81 (114)
+..
T Consensus 122 ~~~ 124 (145)
T COG1051 122 LPL 124 (145)
T ss_pred ccc
Confidence 543
No 39
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.05 E-value=1.9e-10 Score=83.67 Aligned_cols=75 Identities=13% Similarity=0.157 Sum_probs=47.9
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCeE-EEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR 80 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~ 80 (114)
.+..||+.+||+||++|||||++..+.....|......... ..+|.+. ..+. ..+ ..+|+.+++|+++++++.+.
T Consensus 75 ve~GEs~~eAA~REL~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~~--~~~-~~~E~~~~~W~~~~el~~~~ 150 (180)
T PRK15393 75 VQAGEQLLESARREAEEELGIAGVPFAEHGQFYFEDENCRVWGALFSCV-SHGP--FAL-QEEEVSEVCWMTPEEITARC 150 (180)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCccceeceeEEecCCCceEEEEEEEEE-eCCC--CCC-ChHHeeEEEECCHHHHhhhh
Confidence 47789999999999999999987653222233322222222 2334332 2221 122 34799999999999999764
No 40
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.04 E-value=2.1e-10 Score=78.22 Aligned_cols=76 Identities=12% Similarity=0.195 Sum_probs=49.6
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCC-eEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYND-QLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR 80 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~-~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~ 80 (114)
.+..||+.+||+||++||||+++..+.....|....... ....+|.+.. ... ..+ ..+|+.+++|+++++++.+.
T Consensus 38 ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~~~~~~~~~~f~~~~-~~~--~~~-~~~E~~~~~w~~~~el~~~~ 113 (126)
T cd04697 38 VQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYDTDGNRVWGKVFSCVY-DGP--LKL-QEEEVEEITWLSINEILQFK 113 (126)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCccccEEeeEEEecCCCceEEEEEEEEEE-CCC--CCC-CHhHhhheEEcCHHHHHHHh
Confidence 466899999999999999999998644333343322222 2234455432 222 222 34799999999999998754
Q ss_pred h
Q psy13065 81 K 81 (114)
Q Consensus 81 ~ 81 (114)
.
T Consensus 114 ~ 114 (126)
T cd04697 114 E 114 (126)
T ss_pred h
Confidence 3
No 41
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.03 E-value=3e-10 Score=77.75 Aligned_cols=75 Identities=12% Similarity=0.120 Sum_probs=45.7
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeee---eecceeeeecc---CCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHL---IAEDSYLETTY---NDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGD 75 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~l---i~~~~y~~~~~---~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~ 75 (114)
++..||+.+||+||++||||+++... ++...+..... ....+.+|.+. ..... ......++.+++|+++++
T Consensus 35 ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~-~~~~~--~~~~~~e~~~~~W~~~~e 111 (122)
T cd04666 35 PEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRPPRCEVAVFPLE-VTEEL--DEWPEMHQRKRKWFSPEE 111 (122)
T ss_pred cCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeeecCCCCCceEEEEEEEEE-Eeccc--cCCcccCceEEEEecHHH
Confidence 57899999999999999999997643 22222221111 12234444443 22211 122345788999999998
Q ss_pred CCCC
Q psy13065 76 LPSS 79 (114)
Q Consensus 76 lp~~ 79 (114)
+..+
T Consensus 112 a~~~ 115 (122)
T cd04666 112 AALL 115 (122)
T ss_pred HHHh
Confidence 8544
No 42
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.03 E-value=5.2e-10 Score=77.42 Aligned_cols=79 Identities=18% Similarity=0.148 Sum_probs=46.7
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeee-eec----ceee-eeccCC---eEEEEEE-EeccCCCCccCcCCcCcccceEEE
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHL-IAE----DSYL-ETTYND---QLTRLYL-IPGVPIDFKFAPQTRGEIKACQWF 71 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~l-i~~----~~y~-~~~~~~---~~~~lfv-~~~~~~~~~~~p~~~~EI~~i~Wf 71 (114)
++..||+.+||+||++|||||++... +.. ..+. ..+..+ +...+|+ +.....+. .....+|+.+++||
T Consensus 40 ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~E~~~~~w~ 117 (141)
T PRK15472 40 VEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYADGRKEEIYMIYLIFDCVSANR--DVKINEEFQDYAWV 117 (141)
T ss_pred CCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEecCCCceeEEEEEEEEEeecCCC--cccCChhhheEEEc
Confidence 47789999999999999999987531 111 1111 111122 2222222 21111111 22235799999999
Q ss_pred eCCCCCCCchh
Q psy13065 72 PIGDLPSSRKE 82 (114)
Q Consensus 72 ~id~lp~~~~~ 82 (114)
++++|+.+...
T Consensus 118 ~~~el~~l~~~ 128 (141)
T PRK15472 118 KPEDLVHYDLN 128 (141)
T ss_pred cHHHhcccccc
Confidence 99999987643
No 43
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.02 E-value=3.2e-10 Score=77.73 Aligned_cols=78 Identities=12% Similarity=0.100 Sum_probs=49.2
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeeeeec--ceeeeeccCC--eEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHLIAE--DSYLETTYND--QLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLP 77 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~li~~--~~y~~~~~~~--~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp 77 (114)
++..||+.+||+||++||||+++..+... ..+....... ....+|++...... . ....+|..+++|+++++++
T Consensus 36 ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~--~~~~~E~~~~~W~~~~e~~ 112 (131)
T cd04695 36 VEAGETAWQAALRELKEETGISLPELYNADYLEQFYEANDNRILMAPVFVGFVPPHQ-E--VVLNHEHTEYRWCSFAEAL 112 (131)
T ss_pred ccCCCCHHHHHHHHHHHHhCCCccccccccceeeEeecCCceEEEEEEEEEEecCCC-c--cccCchhcccEecCHHHHH
Confidence 47889999999999999999998754211 1111121122 22334554432221 1 1234699999999999998
Q ss_pred CCchh
Q psy13065 78 SSRKE 82 (114)
Q Consensus 78 ~~~~~ 82 (114)
.+...
T Consensus 113 ~~~~~ 117 (131)
T cd04695 113 ELAPF 117 (131)
T ss_pred HhcCC
Confidence 76653
No 44
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.00 E-value=2.3e-10 Score=76.81 Aligned_cols=80 Identities=20% Similarity=0.263 Sum_probs=49.8
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCC--eEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYND--QLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLP 77 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~--~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp 77 (114)
.++.||+.+||+||++||||+++.. +.....+....... ..+.+|++..........+ ..+|+.++.|++++++.
T Consensus 39 i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~W~~~~el~ 117 (134)
T PF00293_consen 39 IEPGESPEEAARRELKEETGLDVSPLELLGLFSYPSPSGDPEGEIVIFFIAELPSEQSEIQP-QDEEISEVKWVPPDELL 117 (134)
T ss_dssp ECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTESSEEEEEEEEEEEEEEESECHT-TTTTEEEEEEEEHHHHH
T ss_pred EEcCCchhhhHHhhhhhcccceecccccceeeeecccCCCcccEEEEEEEEEEeCCccccCC-CCccEEEEEEEEHHHhh
Confidence 4678999999999999999999964 22222232222222 3444444432222212222 23499999999999988
Q ss_pred CCchh
Q psy13065 78 SSRKE 82 (114)
Q Consensus 78 ~~~~~ 82 (114)
.+...
T Consensus 118 ~~~~~ 122 (134)
T PF00293_consen 118 ELLLN 122 (134)
T ss_dssp HHHHT
T ss_pred hchhC
Confidence 76553
No 45
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.00 E-value=3.6e-10 Score=76.83 Aligned_cols=76 Identities=22% Similarity=0.292 Sum_probs=47.0
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee--eeec-ce--eee-eccCCe-EEEEEEEeccCCCCccCcCCcCcccceEEEeCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH--LIAE-DS--YLE-TTYNDQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIG 74 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~--li~~-~~--y~~-~~~~~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id 74 (114)
++..||+.+||+||++||||+++.. ++.. .. +.. ...+.+ ...+|++.. .... .....+|+.+++|++++
T Consensus 37 ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~--~~~~~~E~~~~~W~~~~ 113 (129)
T cd04664 37 IEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTDNGRVWTEHPFAFHL-PSDA--VVTLDWEHDAFEWVPPE 113 (129)
T ss_pred cCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccCCCceEEEEeEEEEEc-CCCC--cccCCccccccEecCHH
Confidence 4678999999999999999999853 3322 11 111 111122 234444443 2221 12345789999999999
Q ss_pred CCCCCc
Q psy13065 75 DLPSSR 80 (114)
Q Consensus 75 ~lp~~~ 80 (114)
+++...
T Consensus 114 e~~~~~ 119 (129)
T cd04664 114 EAAALL 119 (129)
T ss_pred HHHHHH
Confidence 987543
No 46
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.00 E-value=4e-10 Score=76.33 Aligned_cols=77 Identities=14% Similarity=0.172 Sum_probs=49.6
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeeeeec----ceeeeec-cCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHLIAE----DSYLETT-YNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDL 76 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~li~~----~~y~~~~-~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~l 76 (114)
++..||+.+||+||++||||+++..+... ..+.... .....+.+|++...+. ... ...+|+.++.|++++++
T Consensus 36 ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~-~~~--~~~~E~~~~~W~~~~e~ 112 (130)
T cd03428 36 VEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQVRGKLKTVTYFLAELRPD-VEV--KLSEEHQDYRWLPYEEA 112 (130)
T ss_pred CCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEccccCcceEEEEEEEEeCCC-Ccc--ccccceeeEEeecHHHH
Confidence 46789999999999999999999853211 1111111 1234455566553322 122 22379999999999998
Q ss_pred CCCch
Q psy13065 77 PSSRK 81 (114)
Q Consensus 77 p~~~~ 81 (114)
+.+..
T Consensus 113 ~~~~~ 117 (130)
T cd03428 113 LKLLT 117 (130)
T ss_pred HHHcC
Confidence 87654
No 47
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=98.99 E-value=5.2e-10 Score=79.54 Aligned_cols=80 Identities=16% Similarity=0.179 Sum_probs=50.1
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee--eeec--ceeeeec-----------cCCeEEEEEEEeccCCCCccC--cCCcCc
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH--LIAE--DSYLETT-----------YNDQLTRLYLIPGVPIDFKFA--PQTRGE 64 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~--li~~--~~y~~~~-----------~~~~~~~lfv~~~~~~~~~~~--p~~~~E 64 (114)
.+..||+.+||.||++||||+++.. +++. ..+.+.. ..++..++|++.......... +.+.+|
T Consensus 41 ~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E 120 (156)
T PRK00714 41 IDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYDLPKRLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPE 120 (156)
T ss_pred CCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCCeEEecCcHHHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCC
Confidence 4678999999999999999999863 3332 1111110 112344566665433222222 223469
Q ss_pred ccceEEEeCCCCCCCch
Q psy13065 65 IKACQWFPIGDLPSSRK 81 (114)
Q Consensus 65 I~~i~Wf~id~lp~~~~ 81 (114)
+.+++||++++++....
T Consensus 121 ~~~~~W~~~del~~~~~ 137 (156)
T PRK00714 121 FDAWRWVSYWYPLDQVV 137 (156)
T ss_pred eeeeEeCCHHHHHHhch
Confidence 99999999999987643
No 48
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=98.99 E-value=7.4e-10 Score=76.28 Aligned_cols=74 Identities=14% Similarity=0.107 Sum_probs=46.2
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSS 79 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~ 79 (114)
++..||+.+||+||++||||+++..+.....+.... ......+|++..... ... ...+|+.+++|++++++...
T Consensus 34 ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~~~~~-~~~~~~~f~~~~~~~--~~~-~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 34 VEPGESLEEAVRREVKEEVGIRVKNIRYVGSQPWPF-PSSLMLGFTAEADSG--EIV-VDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred ccCCCCHHHHHhhhhhhccCceeeeeEEEeecCCCC-CceEEEEEEEEEcCC--ccc-CCchhhhccEeecHHHHhhc
Confidence 567899999999999999999997532111111111 123344455543321 121 23469999999999885543
No 49
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=98.96 E-value=6.4e-10 Score=79.39 Aligned_cols=76 Identities=13% Similarity=0.227 Sum_probs=48.9
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee--ee-ecceeeeeccCC---e-EEEEEEEeccCCCCccCcCCcCcccceEEEeCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH--LI-AEDSYLETTYND---Q-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIG 74 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~--li-~~~~y~~~~~~~---~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id 74 (114)
++..||+.+||+||++||||+.+.. ++ ....|....... + ...+|.+.. ... ..+ ..+|+.+++|++++
T Consensus 68 ie~GEt~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~-~~~--~~~-~~~Ev~~~~w~~~~ 143 (165)
T cd02885 68 PLPGEGVKDAAQRRLREELGITGDLLELVLPRFRYRAPDDGGLVEHEIDHVFFARA-DVT--LIP-NPDEVSEYRWVSLE 143 (165)
T ss_pred CCCCCCHHHHHHHHHHHHhCCCccchhhccceEEEEEEcCCCceeeEEEEEEEEEe-CCC--CCC-CccceeEEEEECHH
Confidence 4678999999999999999999875 32 222222222111 2 233444442 222 223 45799999999999
Q ss_pred CCCCCch
Q psy13065 75 DLPSSRK 81 (114)
Q Consensus 75 ~lp~~~~ 81 (114)
+++.+..
T Consensus 144 el~~~~~ 150 (165)
T cd02885 144 DLKELVA 150 (165)
T ss_pred HHHHHHH
Confidence 9987664
No 50
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.95 E-value=2.1e-09 Score=72.19 Aligned_cols=76 Identities=14% Similarity=0.201 Sum_probs=45.5
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeeeee-cceeeeeccC-CeEE-EEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHLIA-EDSYLETTYN-DQLT-RLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS 78 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~li~-~~~y~~~~~~-~~~~-~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~ 78 (114)
.+..||+.+||+||++||||+++..... ...+.+.... .+.. .+|.+..... .....+|+.++.|++++++..
T Consensus 38 ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~e~~~~~w~~~~el~~ 113 (129)
T cd04699 38 VEEGETFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVYNVIYLVFVCEALSG----AVKLSDEHEEYAWVTLEELAI 113 (129)
T ss_pred ccCCCCHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcCCCEEEEEEEEEEeeecCC----cccCChhheEEEEecHHHhhh
Confidence 4678999999999999999999875221 1111111111 1222 2233322211 122346889999999999854
Q ss_pred Cch
Q psy13065 79 SRK 81 (114)
Q Consensus 79 ~~~ 81 (114)
+..
T Consensus 114 ~~~ 116 (129)
T cd04699 114 LKA 116 (129)
T ss_pred hhc
Confidence 443
No 51
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=98.94 E-value=5.5e-10 Score=77.88 Aligned_cols=76 Identities=22% Similarity=0.233 Sum_probs=47.6
Q ss_pred cccCCCHHHHHHHHhhhhhCcee--eee--eec---cee------eeeccC---CeEEEEEEEeccCCCCccCcCCcCcc
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDS--SHL--IAE---DSY------LETTYN---DQLTRLYLIPGVPIDFKFAPQTRGEI 65 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v--~~l--i~~---~~y------~~~~~~---~~~~~lfv~~~~~~~~~~~p~~~~EI 65 (114)
.+..||+.+||+||++||||+++ ..+ ++. ..| ...+.. ....++|.+.. ..+. .+ ..+|+
T Consensus 40 ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~--~~-~~~E~ 115 (148)
T PRK09438 40 LEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYEIFPHWRHRYAPGVTRNTEHWFCLAL-PHER--PV-VLTEH 115 (148)
T ss_pred CCCCCCHHHHHHHHHHHHhCcCccccceeecccccccccccchhhhhccccccCCceeEEEEEec-CCCC--cc-ccCcc
Confidence 47789999999999999999998 332 210 111 111111 23345565543 2221 22 23599
Q ss_pred cceEEEeCCCCCCCch
Q psy13065 66 KACQWFPIGDLPSSRK 81 (114)
Q Consensus 66 ~~i~Wf~id~lp~~~~ 81 (114)
.+++|+++++++.+..
T Consensus 116 ~~~~W~~~~e~~~~~~ 131 (148)
T PRK09438 116 LAYQWLDAREAAALTK 131 (148)
T ss_pred cceeeCCHHHHHHHhc
Confidence 9999999999988653
No 52
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=98.93 E-value=3.4e-09 Score=72.51 Aligned_cols=70 Identities=17% Similarity=0.085 Sum_probs=45.9
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCC-eEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYND-QLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLP 77 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~-~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp 77 (114)
++..|++.+||+||++||||+++....-...|. .... ....+|.+....+. .....|..+++|+++++||
T Consensus 47 ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~----~~~~~e~~~~~~~~~~~l~ 117 (130)
T cd04511 47 MENGETTEQGALRETWEEAGARVEIDGLYAVYS--VPHISQVYMFYRARLLDLD----FAPGPESLEVRLFTEEEIP 117 (130)
T ss_pred ccCCCCHHHHHHHHHHHHhCCEEEeeeEEEEEe--cCCceEEEEEEEEEEcCCc----ccCCcchhceEEECHHHCC
Confidence 578899999999999999999986421111111 1222 33444555443221 2234688999999999998
No 53
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.92 E-value=3.7e-09 Score=70.61 Aligned_cols=78 Identities=22% Similarity=0.147 Sum_probs=47.4
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee--eeec---ceeeeeccCC---eEEEEEEEeccCCCCccCcCCcCcccceEEEeC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH--LIAE---DSYLETTYND---QLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI 73 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~--li~~---~~y~~~~~~~---~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~i 73 (114)
++..|++.+||+||++||||+++.. +++. ..+...+..+ +...+++.+...... .. ...+|..+++|+++
T Consensus 34 v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~e~~~~~w~~~ 111 (129)
T cd04676 34 VEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPNGDVRQYLDITFRCRVVGGE-LR-VGDDESLDVAWFDP 111 (129)
T ss_pred cCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCCCCcEEEEEEEEEEEeeCCe-ec-CCCCceeEEEEECh
Confidence 4678999999999999999998864 2211 1111122222 233333333332221 11 24568899999999
Q ss_pred CCCCCCch
Q psy13065 74 GDLPSSRK 81 (114)
Q Consensus 74 d~lp~~~~ 81 (114)
++++.+.-
T Consensus 112 ~el~~~~~ 119 (129)
T cd04676 112 DGLPPLLM 119 (129)
T ss_pred hhCccccC
Confidence 99998643
No 54
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=98.87 E-value=2e-09 Score=78.32 Aligned_cols=78 Identities=14% Similarity=0.145 Sum_probs=51.8
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeeeeecceeee-eccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLE-TTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR 80 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~-~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~ 80 (114)
+|..||+.+||+||++||||+++..+.....+.. .......+++|++..+.... ......|..++.|+++++++.+.
T Consensus 83 ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~~~~~~~f~a~~~~~~~--~~~~e~E~i~~~~~~~~e~~~~~ 160 (185)
T PRK11762 83 IDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPSYFSSKMNIVLAEDLYPER--LEGDEPEPLEVVRWPLADLDELL 160 (185)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCCccCcEEEEEEEEcccccc--CCCCCCceeEEEEEcHHHHHHHH
Confidence 4678999999999999999999986432222221 12234567778877654321 11234566788999999887665
Q ss_pred h
Q psy13065 81 K 81 (114)
Q Consensus 81 ~ 81 (114)
.
T Consensus 161 ~ 161 (185)
T PRK11762 161 A 161 (185)
T ss_pred H
Confidence 4
No 55
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=98.83 E-value=4.6e-09 Score=76.39 Aligned_cols=76 Identities=17% Similarity=0.177 Sum_probs=49.1
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeeee---ecceeeeeccCC----eEEEEEEEeccCCCCccCcCCcCcccceEEEeCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHLI---AEDSYLETTYND----QLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIG 74 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~li---~~~~y~~~~~~~----~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id 74 (114)
++..||+.+||+||++||||+++..+. ....|......+ ....+|++... + ...+ ..+|+.+++|++++
T Consensus 72 ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vf~~~~~-~--~~~~-~~~Ev~~~~W~~~~ 147 (184)
T PRK03759 72 PQPGESLEDAVIRRCREELGVEITDLELVLPDFRYRATDPNGIVENEVCPVFAARVT-S--ALQP-NPDEVMDYQWVDPA 147 (184)
T ss_pred CCCCCCHHHHHHHHHHHHhCCCccccccccceEEEEEecCCCceeeEEEEEEEEEEC-C--CCCC-ChhHeeeEEEECHH
Confidence 467899999999999999999997432 111222211122 22345555432 2 1222 34799999999999
Q ss_pred CCCCCch
Q psy13065 75 DLPSSRK 81 (114)
Q Consensus 75 ~lp~~~~ 81 (114)
++.....
T Consensus 148 el~~~i~ 154 (184)
T PRK03759 148 DLLRAVD 154 (184)
T ss_pred HHHHHHH
Confidence 9987665
No 56
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.81 E-value=6.3e-09 Score=71.53 Aligned_cols=78 Identities=17% Similarity=0.118 Sum_probs=43.5
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee---eeec-ceee-eeccCC---eEEEEEEEeccCCCCccCcCC-cCcc---cceE
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH---LIAE-DSYL-ETTYND---QLTRLYLIPGVPIDFKFAPQT-RGEI---KACQ 69 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~---li~~-~~y~-~~~~~~---~~~~lfv~~~~~~~~~~~p~~-~~EI---~~i~ 69 (114)
++..||+.+||+||++||||+.+.. .+.. ..|. ..+.++ +.+.+|+.+.+.... ..+.. ..|+ .++.
T Consensus 31 ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~ 109 (131)
T cd04686 31 VEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDADIFHMISYYYLCEVDAEL-GAQQLEDYEAELGMKPI 109 (131)
T ss_pred CCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCCceeEEEEEEEEEEEcCCc-CCcccchhhHhcCCCcE
Confidence 4678999999999999999998742 2221 1111 111222 233334444433221 11222 2233 3589
Q ss_pred EEeCCCCCCCc
Q psy13065 70 WFPIGDLPSSR 80 (114)
Q Consensus 70 Wf~id~lp~~~ 80 (114)
|++++++....
T Consensus 110 W~~~~ea~~~~ 120 (131)
T cd04686 110 WINIHEAIEHN 120 (131)
T ss_pred EecHHHHHHhh
Confidence 99999887544
No 57
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=98.80 E-value=2.2e-08 Score=65.36 Aligned_cols=77 Identities=19% Similarity=0.204 Sum_probs=47.1
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeee--eecceeeeec-cCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHL--IAEDSYLETT-YNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS 78 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~l--i~~~~y~~~~-~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~ 78 (114)
++..||+.+||+||++||||+.+... .....+.... .......+|.+....... .....+|+.+..|+++++++.
T Consensus 34 ~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~~w~~~~~l~~ 111 (123)
T cd02883 34 VEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGEHAVVFVFLARLVGGEP--TLLPPDEISEVRWVTLDELPA 111 (123)
T ss_pred ccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEeeccCCCceEEEEEEEEEeCCCCc--CCCCCCccceEEEEcHHHCcc
Confidence 57889999999999999999988632 1111121111 122334445443222211 112346889999999999987
Q ss_pred Cc
Q psy13065 79 SR 80 (114)
Q Consensus 79 ~~ 80 (114)
..
T Consensus 112 ~~ 113 (123)
T cd02883 112 LA 113 (123)
T ss_pred cc
Confidence 33
No 58
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=98.80 E-value=1.2e-08 Score=69.65 Aligned_cols=73 Identities=14% Similarity=0.112 Sum_probs=45.8
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCe-EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS 78 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~ 78 (114)
++..||+.+||+||++||||+++.. ++....+ ...... .+++|.+....+ .+. ..|..+++|+++++++.
T Consensus 39 ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~-~~e~~~~~W~~~~el~~ 111 (135)
T PRK10546 39 VEPGESQPQALIRELREELGIEATVGEYVASHQR--EVSGRRIHLHAWHVPDFHG----ELQ-AHEHQALVWCTPEEALR 111 (135)
T ss_pred CCCCCCHHHHHHHHHHHHHCCccccceeEEEEEE--ecCCcEEEEEEEEEEEecC----ccc-ccccceeEEcCHHHccc
Confidence 4678999999999999999999874 2321111 111222 234444432211 222 34678999999999987
Q ss_pred Cch
Q psy13065 79 SRK 81 (114)
Q Consensus 79 ~~~ 81 (114)
+..
T Consensus 112 ~~~ 114 (135)
T PRK10546 112 YPL 114 (135)
T ss_pred CCC
Confidence 643
No 59
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=98.80 E-value=2.9e-09 Score=82.66 Aligned_cols=74 Identities=20% Similarity=0.402 Sum_probs=52.9
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeec---cCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCC-CC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETT---YNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGD-LP 77 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~---~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~-lp 77 (114)
+|--||+++|++|||+||+|++|+.+ +|+..+ .....+.-|...+.+++ ..+. ..|+.+++||+.++ ||
T Consensus 177 VE~GETlE~AV~REv~EE~Gi~V~~v----rY~~SQPWPfP~SLMigf~aey~sge--I~~d-~~Eleda~WFs~~evl~ 249 (279)
T COG2816 177 VEPGETLEQAVAREVFEEVGIKVKNV----RYVGSQPWPFPHSLMLGFMAEYDSGE--ITPD-EGELEDARWFSRDEVLP 249 (279)
T ss_pred ccCCccHHHHHHHHHHHhhCeEEeee----eEEeccCCCCchhhhhhheeeecccc--ccCC-cchhhhccccCHhHHhh
Confidence 35679999999999999999999975 344322 12233444566665554 3343 37999999999999 88
Q ss_pred CCchh
Q psy13065 78 SSRKE 82 (114)
Q Consensus 78 ~~~~~ 82 (114)
.+..+
T Consensus 250 ~L~~~ 254 (279)
T COG2816 250 ALPPD 254 (279)
T ss_pred hcCCC
Confidence 88764
No 60
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=98.79 E-value=2.4e-08 Score=65.99 Aligned_cols=75 Identities=13% Similarity=0.091 Sum_probs=46.3
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCe-EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR 80 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~ 80 (114)
+++.|++.+||.||++||||+++...-....+.+...... .+.+|.+...... . ...|..++.|+++++++...
T Consensus 37 ~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~e~~~~~W~~~~el~~~~ 111 (124)
T cd03425 37 VEPGETPEQALVRELREELGIEVEVGELLATVEHDYPDKRVTLHVFLVELWSGE----P-QLLEHQELRWVPPEELDDLD 111 (124)
T ss_pred cCCCCCHHHHHHHHHHHhhCcEEeccceEEEEEeeCCCCeEEEEEEEEeeeCCC----c-ccccCceEEEeeHHHcccCC
Confidence 4678999999999999999999874211112222222222 3444444422111 1 13578899999999998754
Q ss_pred h
Q psy13065 81 K 81 (114)
Q Consensus 81 ~ 81 (114)
.
T Consensus 112 ~ 112 (124)
T cd03425 112 F 112 (124)
T ss_pred C
Confidence 3
No 61
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=98.79 E-value=1.2e-08 Score=75.73 Aligned_cols=80 Identities=11% Similarity=-0.054 Sum_probs=52.2
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeeeeecceeee-eccCCeEEEEEEEec-cCC-CCccCcCCcCcccceEEEeCCCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLE-TTYNDQLTRLYLIPG-VPI-DFKFAPQTRGEIKACQWFPIGDLPS 78 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~-~~~~~~~~~lfv~~~-~~~-~~~~~p~~~~EI~~i~Wf~id~lp~ 78 (114)
++..||+.+||+||+.|||||.+..+.....|.. .....+..++|++.. ... .......+.+|..++.|++++++..
T Consensus 91 vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~spg~~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~ 170 (202)
T PRK10729 91 IEEGESVEDVARREAIEEAGLIVGRTKPVLSYLASPGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQ 170 (202)
T ss_pred cCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEcCCCcCceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHH
Confidence 5778999999999999999999986433223332 223446678887763 211 1111122345667799999998876
Q ss_pred Cch
Q psy13065 79 SRK 81 (114)
Q Consensus 79 ~~~ 81 (114)
+..
T Consensus 171 ~~~ 173 (202)
T PRK10729 171 WVE 173 (202)
T ss_pred HHH
Confidence 654
No 62
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.78 E-value=2e-08 Score=69.98 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.5
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH 26 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~ 26 (114)
.+..|++.+||+||++||||+++..
T Consensus 42 ie~~E~~~~aA~REl~EEtGl~~~~ 66 (126)
T cd04662 42 YTEGEDPLLAAKREFSEETGFCVDG 66 (126)
T ss_pred CCCCcCHHHHHHHHHHHHhCCccee
Confidence 4678999999999999999999864
No 63
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=98.77 E-value=1.4e-08 Score=80.55 Aligned_cols=77 Identities=17% Similarity=0.244 Sum_probs=47.5
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee--eee--cceeeeecc----CCeE-EEEEEEeccCCCCccCcCCcCcccceEEEe
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH--LIA--EDSYLETTY----NDQL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFP 72 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~--li~--~~~y~~~~~----~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~ 72 (114)
++..||+.+||+||++|||||++.. +.. ...+...+. .++. .++|++. ++.+........+|..+++|++
T Consensus 237 ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p~r~~~~~~i~~~f~~~-~~~~~~~~~~~~de~~~~~W~~ 315 (340)
T PRK05379 237 LEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHPGRSLRGRTITHAFLFE-FPAGELPRVKGGDDADKARWVP 315 (340)
T ss_pred CCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCCCCCCCCcEEEEEEEEE-ecCCccCccCCCCceeeEEEEE
Confidence 4678999999999999999999863 211 111221111 2233 3444443 3322112223457899999999
Q ss_pred CCCCCCC
Q psy13065 73 IGDLPSS 79 (114)
Q Consensus 73 id~lp~~ 79 (114)
+++++.+
T Consensus 316 ~~el~~~ 322 (340)
T PRK05379 316 LAELLAM 322 (340)
T ss_pred HHHhhhh
Confidence 9999864
No 64
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.75 E-value=1e-08 Score=71.21 Aligned_cols=82 Identities=12% Similarity=0.216 Sum_probs=47.1
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee---eeecce--eeeeccCCeEEEEEEEeccCC-CCcc---CcCCcCcccceEEEe
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH---LIAEDS--YLETTYNDQLTRLYLIPGVPI-DFKF---APQTRGEIKACQWFP 72 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~---li~~~~--y~~~~~~~~~~~lfv~~~~~~-~~~~---~p~~~~EI~~i~Wf~ 72 (114)
.+..||+.+||.||++||||+++.. ++.... |.......+...+|+.+..+. .... .....+++.+++|++
T Consensus 37 ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~ 116 (133)
T cd04685 37 VEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTFLGVDGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWT 116 (133)
T ss_pred CCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEEEEecCccceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCC
Confidence 3678999999999999999999843 222222 222222222233333333332 1111 111224577899999
Q ss_pred CCCCCCCchhh
Q psy13065 73 IGDLPSSRKEI 83 (114)
Q Consensus 73 id~lp~~~~~~ 83 (114)
+++|.....+.
T Consensus 117 ~~el~~~~~~~ 127 (133)
T cd04685 117 RAELAATPETV 127 (133)
T ss_pred HHHHhhCCCcc
Confidence 99998764433
No 65
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=98.73 E-value=4.7e-08 Score=65.44 Aligned_cols=73 Identities=15% Similarity=0.152 Sum_probs=45.8
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeE-EEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS 78 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~ 78 (114)
++..||+.+||.||++||||+++.. .++. +.+...+... +.+|.+....+ .+ ...|..+++|+++++++.
T Consensus 40 ~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~-~~~e~~~~~W~~~~~l~~ 112 (129)
T PRK10776 40 IEAGETPEQALIRELQEEVGITVQHATLFEK--LEYEFPDRHITLWFWLVESWEG----EP-WGKEGQPGRWVSQVALNA 112 (129)
T ss_pred cCCCCCHHHHHHHHHHHHHCCceecceEEEE--EEeeCCCcEEEEEEEEEEEECC----cc-CCccCCccEEecHHHCcc
Confidence 4678999999999999999998764 2221 1122222332 34444432211 12 134778899999999997
Q ss_pred Cch
Q psy13065 79 SRK 81 (114)
Q Consensus 79 ~~~ 81 (114)
...
T Consensus 113 ~~~ 115 (129)
T PRK10776 113 DEF 115 (129)
T ss_pred CCC
Confidence 643
No 66
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=98.73 E-value=1.2e-08 Score=75.28 Aligned_cols=77 Identities=12% Similarity=0.046 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHhhhhhCceeeeeeeccee-eeeccCCeEEEEEEEeccCCC-CccCcCCcCcccceEEEeCCCCCCCch
Q psy13065 5 IMMNIISEAKQVLEETGFDSSHLIAEDSY-LETTYNDQLTRLYLIPGVPID-FKFAPQTRGEIKACQWFPIGDLPSSRK 81 (114)
Q Consensus 5 ~es~~eaAvREv~EETGl~v~~li~~~~y-~~~~~~~~~~~lfv~~~~~~~-~~~~p~~~~EI~~i~Wf~id~lp~~~~ 81 (114)
.++|.+||+||++||||+.+..+.....+ .......+..++|++...... ....+.+.+|..++.|++++++..+..
T Consensus 90 ~~~p~~aA~REL~EETGy~a~~~~~l~~~~~spG~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~ 168 (191)
T PRK15009 90 NDEPEVCIRKEAIEETGYEVGEVRKLFELYMSPGGVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIK 168 (191)
T ss_pred CCCHHHHHHHHHHHhhCCccceEEEeeEEEcCCcccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHH
Confidence 45899999999999999999865432232 222334566788888653211 111122346778899999999876653
No 67
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.71 E-value=5.4e-08 Score=66.65 Aligned_cols=73 Identities=16% Similarity=0.079 Sum_probs=46.8
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeecc-CCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTY-NDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLP 77 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~-~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp 77 (114)
.+..|++.+||.||++||||+++..+.....|..... ......+|++...... ......|+..+.||+.+...
T Consensus 30 ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~~~~~~~~~y~a~~~~~~---~~~~~~E~~~~~~~~~~~~~ 103 (118)
T cd04665 30 VEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLFESGFETLVYPAVSAQLE---EKASYLETDGPVLFKNEPEE 103 (118)
T ss_pred cCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEecCCCCcEEEEEEEEEEEecc---cccccccccCcEEeccCCcc
Confidence 4678999999999999999999975322223332211 2334455555433221 11245799999999976654
No 68
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=98.69 E-value=2.3e-08 Score=73.32 Aligned_cols=80 Identities=13% Similarity=0.035 Sum_probs=50.0
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeeeeecceeee-eccCCeEEEEEEEeccCCCC-ccCcCCcCcccceEEEeCCCCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLE-TTYNDQLTRLYLIPGVPIDF-KFAPQTRGEIKACQWFPIGDLPSS 79 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~-~~~~~~~~~lfv~~~~~~~~-~~~p~~~~EI~~i~Wf~id~lp~~ 79 (114)
.+..|++++||+||++||||+++..+.....+.. ........++|++....... ...+...+|-.++.|++++++..+
T Consensus 86 ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~g~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~ 165 (185)
T TIGR00052 86 VEKGESPEDVARREAIEEAGYQVKNLRKLLSFYSSPGGVTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQW 165 (185)
T ss_pred cCCCCCHHHHHHHHccccccceecceEEEEEEEcCCCCCcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHH
Confidence 5778999999999999999999986432222222 22234556777765322111 111223345567889999887765
Q ss_pred ch
Q psy13065 80 RK 81 (114)
Q Consensus 80 ~~ 81 (114)
..
T Consensus 166 ~~ 167 (185)
T TIGR00052 166 IK 167 (185)
T ss_pred HH
Confidence 43
No 69
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.68 E-value=9.1e-08 Score=64.31 Aligned_cols=73 Identities=14% Similarity=-0.021 Sum_probs=44.7
Q ss_pred ccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeE-EEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCC
Q psy13065 3 EEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSS 79 (114)
Q Consensus 3 ~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~ 79 (114)
++.||+.+||+||++||||+++.. .+.. +.+.....+. +.+|.+. ..++ .+. ..+..++.|+++++++.+
T Consensus 41 e~ge~~~~~~~RE~~EE~g~~~~~~~~~~~--~~h~~~~~~~~~~~~~~~-~~~~---~~~-~~~~~~~~W~~~~~l~~~ 113 (128)
T TIGR00586 41 EGGETPEQAVVRELEEEIGIPQHFSEFEKL--EYEFYPRHITLWFWLLER-WEGG---PPG-KEGQPEEWWVLVGLLADD 113 (128)
T ss_pred CCCCCHHHHHHHHHHHHHCCcceeeeEEEE--EEEECCCcEEEEEEEEEE-EcCC---CcC-cccccccEEeCHHHCCcc
Confidence 578999999999999999999764 2221 1111222222 2333333 2221 111 345678899999999987
Q ss_pred chh
Q psy13065 80 RKE 82 (114)
Q Consensus 80 ~~~ 82 (114)
...
T Consensus 114 ~~p 116 (128)
T TIGR00586 114 FFP 116 (128)
T ss_pred CCC
Confidence 654
No 70
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=98.67 E-value=3.5e-08 Score=71.26 Aligned_cols=78 Identities=22% Similarity=0.304 Sum_probs=47.9
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeee--e---ecceeeee-ccCC---eEEEEEEEeccCCCCccCcCCcCcccceEEEe
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHL--I---AEDSYLET-TYND---QLTRLYLIPGVPIDFKFAPQTRGEIKACQWFP 72 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~l--i---~~~~y~~~-~~~~---~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~ 72 (114)
.+..||+.+||+||++|||||++..+ + +.-.|... ...+ +..++|.+. ++.+....+ ..+|+.++.|++
T Consensus 74 v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~~~~~~e~~~~f~~~-~~~~~~~~~-~~~Ev~~~~~~~ 151 (180)
T cd03676 74 LGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAGGLQPEVEYVYDLE-LPPDFIPAP-QDGEVESFRLLT 151 (180)
T ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCCCcEeeeEEEEEEEE-cCCCCeeCC-CCCcEeEEEEEC
Confidence 35689999999999999999998742 1 11123322 1111 233444332 332222223 347999999999
Q ss_pred CCCCCCCch
Q psy13065 73 IGDLPSSRK 81 (114)
Q Consensus 73 id~lp~~~~ 81 (114)
++++..+..
T Consensus 152 ~~el~~~l~ 160 (180)
T cd03676 152 IDEVLRALK 160 (180)
T ss_pred HHHHHHHHH
Confidence 998876553
No 71
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=98.67 E-value=1.3e-08 Score=72.45 Aligned_cols=72 Identities=17% Similarity=0.344 Sum_probs=44.7
Q ss_pred cCCCHHHHHHHHhhhhhCceeeee----eecceeeeeccCC-e-EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCC
Q psy13065 4 EIMMNIISEAKQVLEETGFDSSHL----IAEDSYLETTYND-Q-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLP 77 (114)
Q Consensus 4 ~~es~~eaAvREv~EETGl~v~~l----i~~~~y~~~~~~~-~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp 77 (114)
..| .+||+||++||||+++... +..-.|...+.++ + ...+|.+.. .. ...+ ..+|+.+++|+++++++
T Consensus 67 ~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~~~~~g~~~~~~~f~~~~-~~--~~~~-~~~Ev~~~~W~~~~el~ 140 (158)
T TIGR02150 67 PGE--LEAAIRRLREELGIPADDVPLTVLPRFSYRARDAWGEHELCPVFFARA-PV--PLNP-NPEEVAEYRWVSLEELK 140 (158)
T ss_pred ccc--HHHHHHHHHHHHCCCccccceEEcceEEEEEecCCCcEEEEEEEEEec-CC--cccC-ChhHeeeEEEeCHHHHH
Confidence 345 4999999999999998752 2212233222222 2 234444442 22 2333 24699999999999998
Q ss_pred CCch
Q psy13065 78 SSRK 81 (114)
Q Consensus 78 ~~~~ 81 (114)
.+..
T Consensus 141 ~~~~ 144 (158)
T TIGR02150 141 EILK 144 (158)
T ss_pred HHHh
Confidence 7665
No 72
>PRK08999 hypothetical protein; Provisional
Probab=98.63 E-value=1.2e-07 Score=73.58 Aligned_cols=96 Identities=13% Similarity=0.063 Sum_probs=58.0
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCe-EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR 80 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~ 80 (114)
+++.||+.+||+||++||||+++........+.+...+.. .+.+|.+....+ .++ ..|..+++|+++++++.+.
T Consensus 41 ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~~~~~~~i~~y~~~~~~~----~~~-~~e~~~~~Wv~~~el~~~~ 115 (312)
T PRK08999 41 VEPGETVEQALARELQEELGIEVTAARPLITVRHDYPDKRVRLDVRRVTAWQG----EPH-GREGQPLAWVAPDELAVYP 115 (312)
T ss_pred CCCCCCHHHHHHHHHHHHhCCceecceeEEEEEEEcCCCeEEEEEEEEEEecC----ccc-CccCCccEEecHHHcccCC
Confidence 4678999999999999999999874211111111112222 344554443221 122 3577889999999999865
Q ss_pred hhhhhhhccCCCCCCCceEEEcc
Q psy13065 81 KEIKTVLINGTPVGTNAFFMIMP 103 (114)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ 103 (114)
.......+-. .......|+|+|
T Consensus 116 ~~~~~~~i~~-~l~lp~ly~it~ 137 (312)
T PRK08999 116 FPPANQPIVR-ALRLPDTYLITP 137 (312)
T ss_pred CCcchHHHHH-HhcCCCEEEEEC
Confidence 5444444332 133457899885
No 73
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=98.63 E-value=5.9e-08 Score=71.48 Aligned_cols=74 Identities=12% Similarity=0.051 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHhhhhhCceeeeeeecceeee-eccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065 5 IMMNIISEAKQVLEETGFDSSHLIAEDSYLE-TTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR 80 (114)
Q Consensus 5 ~es~~eaAvREv~EETGl~v~~li~~~~y~~-~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~ 80 (114)
.+++.+||+||++||||++++.+.....+.. ....+..+..|++.. .......+ +.+|+.++.|++++++....
T Consensus 73 de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~~~~~v~~~-~~~~~~~~-d~~Ev~~v~~vpl~e~~~~~ 147 (190)
T PRK10707 73 DASLIATALREAQEEVAIPPSAVEVIGVLPPVDSSTGYQVTPVVGII-PPDLPYRA-NEDEVAAVFEMPLAEALHLG 147 (190)
T ss_pred cccHHHHHHHHHHHHHCCCccceEEEEEeeeeeccCCcEEEEEEEEE-CCCCCCCC-ChhhhheEEEEeHHHHhCcc
Confidence 5789999999999999999875321111111 111233333333321 11112222 45799999999999988765
No 74
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=98.60 E-value=1.7e-07 Score=69.14 Aligned_cols=84 Identities=7% Similarity=-0.015 Sum_probs=48.1
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeee-------------e---ecceeee--eccCC------eEEEEEEEeccCCC-Cc
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHL-------------I---AEDSYLE--TTYND------QLTRLYLIPGVPID-FK 56 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~l-------------i---~~~~y~~--~~~~~------~~~~lfv~~~~~~~-~~ 56 (114)
++..||+.+||+||++||||+++... + ....|.. ..+.. ..+.+++....... ..
T Consensus 69 v~~~E~~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~~~~vy~~~~~dpr~td~~w~~Tva~~f~~~~~~~~~~ 148 (186)
T cd03670 69 VDPGEKISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDGVEVYKGYVDDPRNTDNAWMETVAVNFHDEDGNDVEN 148 (186)
T ss_pred ccCCCCHHHHHHHHHHHHHcccccccchhhhhhcchhhhhcccccEEEeccccCCCCCCcceEEEEEEEEEecCcccccc
Confidence 57899999999999999998764321 0 0111211 11111 23333332211000 01
Q ss_pred cCcCCcCcccceEEEeCCCCCCCchhhhh
Q psy13065 57 FAPQTRGEIKACQWFPIGDLPSSRKEIKT 85 (114)
Q Consensus 57 ~~p~~~~EI~~i~Wf~id~lp~~~~~~~~ 85 (114)
..++..++..+++||+++++|.+..+-..
T Consensus 149 ~~~~a~dda~~a~W~~v~~l~~L~~dH~~ 177 (186)
T cd03670 149 LPLEAGDDAGSVRWQDIDSKLPLYANHSQ 177 (186)
T ss_pred cccCCCCchheeEEEEcccccccccCHHH
Confidence 22334568999999999999977665443
No 75
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=98.57 E-value=4.3e-07 Score=63.16 Aligned_cols=74 Identities=14% Similarity=0.111 Sum_probs=41.9
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeee---ee-cceeeeeccCCeEEEEEEEec---cCCCCccCcCCcCcccceE--EEe
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHL---IA-EDSYLETTYNDQLTRLYLIPG---VPIDFKFAPQTRGEIKACQ--WFP 72 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~l---i~-~~~y~~~~~~~~~~~lfv~~~---~~~~~~~~p~~~~EI~~i~--Wf~ 72 (114)
.+..||+.+||+||++||||+++... .. ...+.. ...+.++++++.. .+......++ .+|...+. |++
T Consensus 33 ve~~E~~~~aa~Rel~EEtGl~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~-~~E~~~i~~~Wv~ 109 (126)
T cd04663 33 VEPGETPEAAALRELQEESGLPSFLSDYILHVWERRFY--QKRHFWHLTLCEVDQDLPDSWVHFVQ-DDGGHEFRFFWVD 109 (126)
T ss_pred CCCCCCHHHHHHHHHHHHHCCeeeeeeecceeeeCCEe--eccEEEEEEEEEecCCCcccccCccc-CCCCceEEEEEEc
Confidence 46789999999999999999997321 11 111111 1233344444322 1223323333 23445555 999
Q ss_pred CCCCCC
Q psy13065 73 IGDLPS 78 (114)
Q Consensus 73 id~lp~ 78 (114)
+++++.
T Consensus 110 l~~~~~ 115 (126)
T cd04663 110 LASCLD 115 (126)
T ss_pred cccccc
Confidence 999854
No 76
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.54 E-value=9.1e-08 Score=67.39 Aligned_cols=78 Identities=14% Similarity=0.182 Sum_probs=45.4
Q ss_pred ccCCCHHHHHHHHhhhhhCceeeee------eecc--eeeeec----cCCeEEEEEEEe-ccCCC--C--ccCcCCcCcc
Q psy13065 3 EEIMMNIISEAKQVLEETGFDSSHL------IAED--SYLETT----YNDQLTRLYLIP-GVPID--F--KFAPQTRGEI 65 (114)
Q Consensus 3 ~~~es~~eaAvREv~EETGl~v~~l------i~~~--~y~~~~----~~~~~~~lfv~~-~~~~~--~--~~~p~~~~EI 65 (114)
+..|++.+||+||++||||+++... +... .|-... ...++..+|++. ..... . ...+ ..+|+
T Consensus 39 ~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~~Ev 117 (143)
T cd04694 39 ELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLLSRGLPKRHHIVVYILVKSSETHQQLQARLQP-DPNEV 117 (143)
T ss_pred CCCCCHHHHHHHHHHHHHCCCccccccceeEEeeeccccccccCCCcccceeEEEEEEEEeccccccccccccC-Chhhc
Confidence 4578999999999999999998642 2111 111110 112334444432 22111 1 1112 24799
Q ss_pred cceEEEeCCCCCCCch
Q psy13065 66 KACQWFPIGDLPSSRK 81 (114)
Q Consensus 66 ~~i~Wf~id~lp~~~~ 81 (114)
.+++|++++++.....
T Consensus 118 ~~~~Wv~~~~a~~~~~ 133 (143)
T cd04694 118 SAAAWLDKSLAKAVVS 133 (143)
T ss_pred cceEeeCHHHHHHHHH
Confidence 9999999998765543
No 77
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=98.51 E-value=8.2e-08 Score=73.57 Aligned_cols=73 Identities=16% Similarity=0.213 Sum_probs=42.3
Q ss_pred CHHHHHHHHhhhhhCceeee-----eeecce--eeee-----ccCC----eEE-EEEEEeccCCCCccCcCCcCcccceE
Q psy13065 7 MNIISEAKQVLEETGFDSSH-----LIAEDS--YLET-----TYND----QLT-RLYLIPGVPIDFKFAPQTRGEIKACQ 69 (114)
Q Consensus 7 s~~eaAvREv~EETGl~v~~-----li~~~~--y~~~-----~~~~----~~~-~lfv~~~~~~~~~~~p~~~~EI~~i~ 69 (114)
+..+||+||++|||||++.. +..... |... ++++ +.+ .+|+..... +....++ .+|+.+++
T Consensus 116 ~~~eAA~REL~EElGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~-~~~l~lq-~eEV~~~~ 193 (247)
T PLN02552 116 GVKNAAQRKLLHELGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVR-DVKVNPN-PDEVADVK 193 (247)
T ss_pred hHHHHHHhHHHHHhCCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEecC-CCcccCC-HHHhheEE
Confidence 37899999999999999653 111111 1111 1112 222 223332222 2233333 47999999
Q ss_pred EEeCCCCCCCch
Q psy13065 70 WFPIGDLPSSRK 81 (114)
Q Consensus 70 Wf~id~lp~~~~ 81 (114)
|+++++++.+..
T Consensus 194 wvs~~el~~~~~ 205 (247)
T PLN02552 194 YVNREELKEMMR 205 (247)
T ss_pred EEeHHHHHHHHh
Confidence 999999997643
No 78
>PLN03143 nudix hydrolase; Provisional
Probab=98.51 E-value=1.4e-07 Score=73.92 Aligned_cols=86 Identities=19% Similarity=0.204 Sum_probs=53.2
Q ss_pred Cccc-CCCHHHHHHHHhhhhhCceee--eeeec----------ceeeeeccCCeEEEEEEEeccCCCC-------c-cCc
Q psy13065 1 MMEE-IMMNIISEAKQVLEETGFDSS--HLIAE----------DSYLETTYNDQLTRLYLIPGVPIDF-------K-FAP 59 (114)
Q Consensus 1 ~~~~-~es~~eaAvREv~EETGl~v~--~li~~----------~~y~~~~~~~~~~~lfv~~~~~~~~-------~-~~p 59 (114)
|+|. .+++.+||+||++|||||.+. .++.. ..|.......+.+++|++.+.-... . ...
T Consensus 166 ~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG~~dE~i~Lfla~~~v~~~~l~~l~~~~~~l 245 (291)
T PLN03143 166 MLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPGGCDEEISLFLYRGHVDKETIRQLQGKETGL 245 (291)
T ss_pred ccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCceEEecCCccCCeEEEEEEccccchhhhcccccccCCC
Confidence 4565 489999999999999999864 23322 1222222234567778766542110 0 011
Q ss_pred CCcCcccceEEEeCCCCCCCchhhhhh
Q psy13065 60 QTRGEIKACQWFPIGDLPSSRKEIKTV 86 (114)
Q Consensus 60 ~~~~EI~~i~Wf~id~lp~~~~~~~~~ 86 (114)
.+.+|..++.|++++++..+..++++.
T Consensus 246 ~degE~Iev~~vpl~eiw~~~aD~ktl 272 (291)
T PLN03143 246 RDHGELIKVHVVPYRELWRMTADAKVL 272 (291)
T ss_pred CCCCcEEEEEEEEHHHHHHHHHhHHHH
Confidence 234577789999999987776555543
No 79
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.50 E-value=1e-06 Score=60.48 Aligned_cols=77 Identities=16% Similarity=0.002 Sum_probs=42.6
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee-eeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH-LIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR 80 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~-li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~ 80 (114)
++..||+.+||.||++||||+++.. .+..- ........+...+++...... ...+....+..+..|+.++.+|.+.
T Consensus 38 ve~~E~~~~aa~REl~EE~g~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~E~~~~~~~~~~~~~~ 114 (118)
T cd04674 38 IELGETWQDAVARELLEETGVAVDPADIRLF-DVRSAPDGTLLVFGLLPERRA--ADLPPFEPTDETTERAVVTAPSELA 114 (118)
T ss_pred cCCCCCHHHHHHHHHHHHHCCcccccEEEEE-EEEecCCCeEEEEEEEecccc--ccCCCCCCCcceeeEEEccCCcccc
Confidence 5788999999999999999999873 22111 111222333333323322211 1122233344555677777777655
Q ss_pred h
Q psy13065 81 K 81 (114)
Q Consensus 81 ~ 81 (114)
.
T Consensus 115 ~ 115 (118)
T cd04674 115 F 115 (118)
T ss_pred c
Confidence 3
No 80
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=98.47 E-value=4.3e-07 Score=60.02 Aligned_cols=80 Identities=18% Similarity=0.243 Sum_probs=42.5
Q ss_pred ccCCCHHH-HHHHHhhhhhCceeee--eeecceeeeecc-C----CeEEEEEEEeccCCCCccCcCC----cCcccceEE
Q psy13065 3 EEIMMNII-SEAKQVLEETGFDSSH--LIAEDSYLETTY-N----DQLTRLYLIPGVPIDFKFAPQT----RGEIKACQW 70 (114)
Q Consensus 3 ~~~es~~e-aAvREv~EETGl~v~~--li~~~~y~~~~~-~----~~~~~lfv~~~~~~~~~~~p~~----~~EI~~i~W 70 (114)
+..|++.+ ||+||++||||+++.. +.....+..... . ......++.............. ..|+..+.|
T Consensus 46 e~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 125 (161)
T COG0494 46 EPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSPGDGSSVGGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEW 125 (161)
T ss_pred CCCCchHHHHHHHHHHHHhCCeeeeecceeeeeccCcccCcccccceEEEEEEeeeccccccccccccCCCcchhhceee
Confidence 44556677 9999999999999983 222222211110 0 1111111222111111111111 258999999
Q ss_pred EeCCCCCCCchh
Q psy13065 71 FPIGDLPSSRKE 82 (114)
Q Consensus 71 f~id~lp~~~~~ 82 (114)
++++++......
T Consensus 126 ~~~~~~~~~~~~ 137 (161)
T COG0494 126 VPLDELAALVLA 137 (161)
T ss_pred eeHHHccccccc
Confidence 999988877653
No 81
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=98.41 E-value=6.7e-07 Score=64.29 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=47.1
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeecc-CCeEEEEEEEeccCCCCccCcCCcCcccceE-EEeCCCCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTY-NDQLTRLYLIPGVPIDFKFAPQTRGEIKACQ-WFPIGDLPSS 79 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~-~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~-Wf~id~lp~~ 79 (114)
.+..||+.+||+||++||||+.+..+.....|..... ......+|++..... ++. +|..++. ++++++++..
T Consensus 54 vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~~~~~~~~~vf~A~~~~~----~~~--~e~~E~~~~~~~~~~~~~ 127 (156)
T TIGR02705 54 VEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEGESTDFVKDVYFAEVSAL----ESK--DDYLETKGPVLLQEIPDI 127 (156)
T ss_pred cCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecCCCcEEEEEEEEEEEecc----ccC--CCceeeEeEEEHHHHHHH
Confidence 3678999999999999999999986433233433221 223456666654422 222 4544555 7999888765
Q ss_pred ch
Q psy13065 80 RK 81 (114)
Q Consensus 80 ~~ 81 (114)
..
T Consensus 128 ~~ 129 (156)
T TIGR02705 128 IK 129 (156)
T ss_pred Hh
Confidence 54
No 82
>PLN02709 nudix hydrolase
Probab=98.28 E-value=1.2e-06 Score=66.24 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHhhhhhCceeee--eeec-ceeeeeccCCeEEEEEEEec-cCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065 5 IMMNIISEAKQVLEETGFDSSH--LIAE-DSYLETTYNDQLTRLYLIPG-VPIDFKFAPQTRGEIKACQWFPIGDLPSSR 80 (114)
Q Consensus 5 ~es~~eaAvREv~EETGl~v~~--li~~-~~y~~~~~~~~~~~lfv~~~-~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~ 80 (114)
.+|+.+||+||+.||+||+... +++. ..+. . ..+..+.=|++.- -+......+ +.+|+.++-|++++.+....
T Consensus 80 D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~-t-~sg~~V~P~V~~~~~~~~~~~~~-np~EV~~vf~vPL~~ll~~~ 156 (222)
T PLN02709 80 DKDDIATALREAREEIGLDPSLVTIISVLEPFV-N-KKGMSVAPVIGFLHDKKAFKPLP-NPAEVEEIFDVPLEMFLKDK 156 (222)
T ss_pred CCCHHHHHHHHHHHHHCCCchheEEeeecCCeE-C-CCCCEEEEEEEEecCCCCccccC-ChhhhheeEEecHHHHhCCc
Confidence 3688999999999999998863 4442 2222 2 2233344344311 111222222 45799999999999887654
Q ss_pred h
Q psy13065 81 K 81 (114)
Q Consensus 81 ~ 81 (114)
.
T Consensus 157 ~ 157 (222)
T PLN02709 157 N 157 (222)
T ss_pred c
Confidence 3
No 83
>KOG3041|consensus
Probab=97.96 E-value=1.4e-05 Score=59.67 Aligned_cols=82 Identities=17% Similarity=0.259 Sum_probs=48.3
Q ss_pred CcccCCCHHHHHHHHhhhhhCceeee-eeecceeeeeccCC--eEEEEEEEec-cCCCCccCcC-CcCcccceEEEeCCC
Q psy13065 1 MMEEIMMNIISEAKQVLEETGFDSSH-LIAEDSYLETTYND--QLTRLYLIPG-VPIDFKFAPQ-TRGEIKACQWFPIGD 75 (114)
Q Consensus 1 ~~~~~es~~eaAvREv~EETGl~v~~-li~~~~y~~~~~~~--~~~~lfv~~~-~~~~~~~~p~-~~~EI~~i~Wf~id~ 75 (114)
|.+.-|++.+||+||++|||||.-+. ..++.-|......+ ..+.++-+.+ .+++....++ .+.|--++.=++..+
T Consensus 111 LiD~ge~~~~aAiREl~EEtGy~gkv~~~s~~~f~DPGltn~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~ 190 (225)
T KOG3041|consen 111 LIDDGEDFEGAAIRELEEETGYKGKVDMVSPTVFLDPGLTNCNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSE 190 (225)
T ss_pred cccCCCchHHHHHHHHHHHhCccceeeeccccEEcCCCCCCCceEEEEEEecCCCccccCccccCCCCceEEEEEeeHHH
Confidence 46778999999999999999998443 22344455443222 2233333332 4444333322 235777777777777
Q ss_pred CCCCchh
Q psy13065 76 LPSSRKE 82 (114)
Q Consensus 76 lp~~~~~ 82 (114)
|+.-..+
T Consensus 191 L~~~~~~ 197 (225)
T KOG3041|consen 191 LWRELAD 197 (225)
T ss_pred HHHHHHh
Confidence 6654443
No 84
>KOG2839|consensus
Probab=97.87 E-value=1e-05 Score=57.43 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=45.6
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeee---eecceeeeeccCCe-EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHL---IAEDSYLETTYNDQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLP 77 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~l---i~~~~y~~~~~~~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp 77 (114)
+|-.||+.+||+||+.||.|+.-... .+..++..+..... ....|+. .+......-|....|-...+|+.++|.-
T Consensus 45 wE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~~~~~~~~~~~~~k~~~~~l-~v~e~le~wp~~~~~~r~r~W~~ledA~ 123 (145)
T KOG2839|consen 45 WEPDESVEEAALRETWEEAGVKGKLGRLLGGFEDFLSKKHRTKPKGVMYVL-AVTEELEDWPESEHEFREREWLKLEDAI 123 (145)
T ss_pred CCCCCCHHHHHHHHHHHHhCceeeeeccccchhhccChhhcccccceeehh-hhhhhcccChhhhcccceeEEeeHHHHH
Confidence 46789999999999999999987742 22223332211111 1122333 2222333335455678999999997764
Q ss_pred CC
Q psy13065 78 SS 79 (114)
Q Consensus 78 ~~ 79 (114)
+.
T Consensus 124 ~~ 125 (145)
T KOG2839|consen 124 EL 125 (145)
T ss_pred HH
Confidence 43
No 85
>PLN02791 Nudix hydrolase homolog
Probab=97.79 E-value=3.5e-05 Score=67.20 Aligned_cols=77 Identities=18% Similarity=0.257 Sum_probs=46.6
Q ss_pred ccCCCHHHHHHHHhhhhhCceeee--eeecceeeee---c----cCCeEEEEEEEeccCCC--CccCcCCcCcccceEEE
Q psy13065 3 EEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLET---T----YNDQLTRLYLIPGVPID--FKFAPQTRGEIKACQWF 71 (114)
Q Consensus 3 ~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~---~----~~~~~~~lfv~~~~~~~--~~~~p~~~~EI~~i~Wf 71 (114)
.-.||+.+||+||++||+||++.. +.....+... . ......++|++..+... ..+.++ .+|+.++.|+
T Consensus 72 ~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq-~eEV~~v~wv 150 (770)
T PLN02791 72 SAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQ-ESEVSAVKYM 150 (770)
T ss_pred CCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEeeccCCCcceeeEEEEEEEEECCCCCcccCCCC-hhhhheeEEE
Confidence 456899999999999999998742 2111111111 1 11234556665422211 123343 4799999999
Q ss_pred eCCCCCCCc
Q psy13065 72 PIGDLPSSR 80 (114)
Q Consensus 72 ~id~lp~~~ 80 (114)
+++++..+.
T Consensus 151 sl~El~~~l 159 (770)
T PLN02791 151 SIEEYKSAL 159 (770)
T ss_pred cHHHHHHHH
Confidence 999886544
No 86
>KOG3084|consensus
Probab=97.53 E-value=6.1e-05 Score=59.67 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=23.5
Q ss_pred cccCCCHHHHHHHHhhhhhCceeeee
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSHL 27 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~l 27 (114)
+|--||.+|||+||++||||++|+.+
T Consensus 222 lEpGES~eeav~REtwEEtGi~V~~I 247 (345)
T KOG3084|consen 222 LEPGESIEEAVRRETWEETGIEVEVI 247 (345)
T ss_pred CCccccHHHHHHHHHHHHhCceeeeE
Confidence 56679999999999999999999964
No 87
>KOG0648|consensus
Probab=97.29 E-value=3e-05 Score=60.81 Aligned_cols=75 Identities=21% Similarity=0.320 Sum_probs=43.8
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeEEEEEEEeccC-CCCccCcCCcCcccceEEEeCCCCC
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQLTRLYLIPGVP-IDFKFAPQTRGEIKACQWFPIGDLP 77 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~~~lfv~~~~~-~~~~~~p~~~~EI~~i~Wf~id~lp 77 (114)
.++-|++.++|+|||+||||++-.- .+...+-+.........+.|+.|.+- .+..... ...||..++|+++.+.-
T Consensus 152 v~~~e~i~~gavrEvkeetgid~ef~eVla~r~~H~~~~~~~ksd~f~~c~L~p~s~~i~~-~~~ei~~~~Wmp~~e~v 229 (295)
T KOG0648|consen 152 VEEGEDIWHGAVREVKEETGIDTEFVEVLAFRRAHNATFGLIKSDMFFTCELRPRSLDITK-CKREIEAAAWMPIEEYV 229 (295)
T ss_pred ecccccchhhhhhhhHHHhCcchhhhhHHHHHhhhcchhhcccccceeEEEeeccccccch-hHHHHHHHhcccHHHhh
Confidence 3678999999999999999996652 22111111110111134456655543 2222222 24599999999998543
No 88
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=96.91 E-value=0.0012 Score=46.54 Aligned_cols=74 Identities=14% Similarity=0.165 Sum_probs=46.1
Q ss_pred ccCCCHHHHHHHHhhhhhCceeee-eeecceeeeeccCCeEEEEEEEec---------------cCCCCccCcCCcCccc
Q psy13065 3 EEIMMNIISEAKQVLEETGFDSSH-LIAEDSYLETTYNDQLTRLYLIPG---------------VPIDFKFAPQTRGEIK 66 (114)
Q Consensus 3 ~~~es~~eaAvREv~EETGl~v~~-li~~~~y~~~~~~~~~~~lfv~~~---------------~~~~~~~~p~~~~EI~ 66 (114)
.+-|++.-||.||.-||+|+.|+. +++...+. +..++.+..|-+.. .|.. .+.-+.=.|+.
T Consensus 46 ~~gEdp~~AArREf~EE~Gi~vdGP~~~lG~~k--Q~GGKvVta~~veae~Dva~~rSntFe~eWPpr-SG~M~~FPEVD 122 (161)
T COG4119 46 TGGEDPWLAARREFSEEIGICVDGPRIDLGSLK--QSGGKVVTAFGVEAELDVADARSNTFELEWPPR-SGKMRKFPEVD 122 (161)
T ss_pred CCCcCHHHHHHHHhhhhhceeecCchhhhhhhc--cCCCcEEEEEeeeeeeehhhhhcceeeeecCCC-CCccccCcccc
Confidence 467899999999999999999985 44333332 23455565554432 1100 01111124899
Q ss_pred ceEEEeCCCCCCC
Q psy13065 67 ACQWFPIGDLPSS 79 (114)
Q Consensus 67 ~i~Wf~id~lp~~ 79 (114)
...||++.+....
T Consensus 123 RagWF~l~eAr~K 135 (161)
T COG4119 123 RAGWFPLAEARTK 135 (161)
T ss_pred cccceecHHHHhH
Confidence 9999998765543
No 89
>KOG3069|consensus
Probab=96.91 E-value=0.00085 Score=51.28 Aligned_cols=76 Identities=16% Similarity=0.257 Sum_probs=45.1
Q ss_pred cCCCHHHHHHHHhhhhhCceeee--eee-cceeeeeccCCe--EEEEEEEec-cCCCCccCcCCcCcccceEEEeCCCCC
Q psy13065 4 EIMMNIISEAKQVLEETGFDSSH--LIA-EDSYLETTYNDQ--LTRLYLIPG-VPIDFKFAPQTRGEIKACQWFPIGDLP 77 (114)
Q Consensus 4 ~~es~~eaAvREv~EETGl~v~~--li~-~~~y~~~~~~~~--~~~lfv~~~-~~~~~~~~p~~~~EI~~i~Wf~id~lp 77 (114)
+..|.++||.||.+||.|++.+. +++ ...+..+ .+.. -+..|+... +- .... ....|+.++-|+|++++-
T Consensus 86 ~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r-~~~~v~p~v~~l~~~~~l--~~~~-ln~gEv~~~F~VPL~~ll 161 (246)
T KOG3069|consen 86 HDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLR-SGWSVFPVVGFLSDKKIL--PSLR-LNSGEVESAFWVPLTDLL 161 (246)
T ss_pred cccchHHHHHHHHHHHhCCCHHHhhhhhhccceeec-cCcccceeEEEEeccccc--cccc-CCchheeeeeeeeHHHHh
Confidence 45688899999999999999864 222 1122222 1222 122233221 10 1111 234799999999999988
Q ss_pred CCchhh
Q psy13065 78 SSRKEI 83 (114)
Q Consensus 78 ~~~~~~ 83 (114)
......
T Consensus 162 ~~~~~~ 167 (246)
T KOG3069|consen 162 LPKHQT 167 (246)
T ss_pred hhhcch
Confidence 776644
No 90
>PLN02839 nudix hydrolase
Probab=96.83 E-value=0.0015 Score=52.81 Aligned_cols=74 Identities=22% Similarity=0.284 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHhhhhhCceee---eeeec--ceeeeeccCC-eEEEEEEEe-ccCCCCccCcCCcCcccceEEEeCCCCC
Q psy13065 5 IMMNIISEAKQVLEETGFDSS---HLIAE--DSYLETTYND-QLTRLYLIP-GVPIDFKFAPQTRGEIKACQWFPIGDLP 77 (114)
Q Consensus 5 ~es~~eaAvREv~EETGl~v~---~li~~--~~y~~~~~~~-~~~~lfv~~-~~~~~~~~~p~~~~EI~~i~Wf~id~lp 77 (114)
-|++.+|++||+.||.||... .+... -.|......+ +.-.+|+.. .+|.+....++ +.|+.+..+++++++-
T Consensus 247 Gesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~~~evly~YDLeLP~df~P~~q-DGEVe~F~Lm~v~EV~ 325 (372)
T PLN02839 247 GISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCFKRDVLFCYDLELPQDFVPKNQ-DGEVESFKLIPVAQVA 325 (372)
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCccccCEEEEeeeecCCccccCCC-ccceeEEEEecHHHHH
Confidence 589999999999999999755 22221 2233222111 222334322 35555544444 4699999999998875
Q ss_pred CC
Q psy13065 78 SS 79 (114)
Q Consensus 78 ~~ 79 (114)
..
T Consensus 326 ~~ 327 (372)
T PLN02839 326 NV 327 (372)
T ss_pred HH
Confidence 33
No 91
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=96.11 E-value=0.0049 Score=45.35 Aligned_cols=76 Identities=12% Similarity=0.129 Sum_probs=46.9
Q ss_pred cCCCHHHHHHHHhhhhhCceeee--e---eecceeeeeccCC--eEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCC
Q psy13065 4 EIMMNIISEAKQVLEETGFDSSH--L---IAEDSYLETTYND--QLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDL 76 (114)
Q Consensus 4 ~~es~~eaAvREv~EETGl~v~~--l---i~~~~y~~~~~~~--~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~l 76 (114)
..||..+||+|-+.+|.|+.+.. . +..-+|.....++ ++-..|++.+...+ .+.+ ..+|+.+.+|++++++
T Consensus 73 ~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~~~~~~E~Eic~V~~~~~~~-~~~~-npdEV~~~~wv~~e~l 150 (185)
T COG1443 73 PGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAADPDGIVENEICPVLAARLDS-ALDP-NPDEVMDYRWVSPEDL 150 (185)
T ss_pred CCCchHHHHHHHHHHHhCCCCcccCccccccceEEeccCCCCcceeeeeeEEEEeecC-CCCC-ChHHhhheeccCHHHH
Confidence 35899999999999999999984 1 1122333332222 22222333222221 3444 3589999999999887
Q ss_pred CCCch
Q psy13065 77 PSSRK 81 (114)
Q Consensus 77 p~~~~ 81 (114)
-....
T Consensus 151 ~~~~~ 155 (185)
T COG1443 151 KEMVD 155 (185)
T ss_pred HHhhc
Confidence 65553
No 92
>KOG4432|consensus
Probab=89.22 E-value=1 Score=36.07 Aligned_cols=100 Identities=13% Similarity=0.195 Sum_probs=57.0
Q ss_pred ccCCCHHHHHHHHhhhhhCceeee--eeecceeeeec-cCCeEEEEEEEe--ccCC-CCccCcCCcCcccceEEEeCCCC
Q psy13065 3 EEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETT-YNDQLTRLYLIP--GVPI-DFKFAPQTRGEIKACQWFPIGDL 76 (114)
Q Consensus 3 ~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~-~~~~~~~lfv~~--~~~~-~~~~~p~~~~EI~~i~Wf~id~l 76 (114)
+.+-|..+-|.||+.||.||++-. +--...|+... ..+.....|.+. .... +.-+-....+|+.++-=++++++
T Consensus 294 d~p~s~~e~a~~e~veecGYdlp~~~~k~va~y~sGVG~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEvv~lsle~a 373 (405)
T KOG4432|consen 294 DDPFSDPEKAARESVEECGYDLPEDSFKLVAKYISGVGQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEVVRLSLEDA 373 (405)
T ss_pred CCCcccHHHHHHHHHHHhCCCCCHHHHhhhheeecccCCcCCeeEEEEEEeehhhccCCCCCcccccceeeEEEechhhh
Confidence 455688899999999999999963 22223344321 123333333331 1110 01111123457788888899998
Q ss_pred CCCchhhhhhhccCCCCCCCceEEEccchHhH
Q psy13065 77 PSSRKEIKTVLINGTPVGTNAFFMIMPFINSI 108 (114)
Q Consensus 77 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (114)
|.+-. +++|+ ...+-+|-+.=|+.++
T Consensus 374 ~~~~~---q~~I~---~~lt~~~gi~wfl~q~ 399 (405)
T KOG4432|consen 374 PSLYR---QHNIG---PPLTTYYGIGWFLDQL 399 (405)
T ss_pred hHHHh---ccCCC---CCcceeeeHHHHHhhh
Confidence 87654 44455 3346677776666554
No 93
>KOG4432|consensus
Probab=86.17 E-value=0.96 Score=36.27 Aligned_cols=46 Identities=17% Similarity=0.248 Sum_probs=30.6
Q ss_pred ccCCCHHHHHHHHhhhhhCceeee--eeecceeeee-ccCCeEEEEEEE
Q psy13065 3 EEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLET-TYNDQLTRLYLI 48 (114)
Q Consensus 3 ~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~-~~~~~~~~lfv~ 48 (114)
++.-|+.+-|..||.||.|++|.. ++....|... +..+.-.++|.+
T Consensus 89 dke~s~~eia~eev~eecgy~v~~d~l~hv~~~~~g~~~s~sa~~l~y~ 137 (405)
T KOG4432|consen 89 DKELSPREIASEEVAEECGYRVDPDDLIHVITFVVGAHQSGSAQHLYYA 137 (405)
T ss_pred ccccCHHHHhHHHHHHHhCCcCChhHceEEEEEEeccccCccchheeee
Confidence 456899999999999999999984 5544444322 112333455554
No 94
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=83.55 E-value=3.9 Score=26.12 Aligned_cols=66 Identities=11% Similarity=-0.019 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCe-EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCch
Q psy13065 5 IMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSRK 81 (114)
Q Consensus 5 ~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~~ 81 (114)
.++..++..|+..+|.++ ....++ .+.+...+.. .+.+|.+....+. .+..++.|+++++++....
T Consensus 41 ~~~~~~~~~~~~~~~~~~-~~~~~~--~~~H~fth~~~~~~~~~~~~~~~~--------~~~~~~~W~~~eel~~~~~ 107 (118)
T cd03431 41 EADGEEALLSALKKALRL-SLEPLG--TVKHTFTHFRLTLHVYLARLEGDL--------LAPDEGRWVPLEELDEYAL 107 (118)
T ss_pred CcCHHHHHHHHHHHHhCc-ccccce--eEEEecCCeEEEEEEEEEEEeCCC--------cCccccEEccHHHHhhCCC
Confidence 356788889999888765 111111 1222222222 2344444322110 2456789999999987653
No 95
>KOG0142|consensus
Probab=83.37 E-value=0.7 Score=34.91 Aligned_cols=70 Identities=13% Similarity=0.200 Sum_probs=44.1
Q ss_pred CHHHHHHHHhhhhhCceeeee-------eecceeeeeccC--C-eE--EEEEEEeccCCCCccCcCCcCcccceEEEeCC
Q psy13065 7 MNIISEAKQVLEETGFDSSHL-------IAEDSYLETTYN--D-QL--TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIG 74 (114)
Q Consensus 7 s~~eaAvREv~EETGl~v~~l-------i~~~~y~~~~~~--~-~~--~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id 74 (114)
-...||+|-++=|.|+..+.+ +...+|.....+ | +. +.+|+...++ ..| ..+|+++++|++.+
T Consensus 104 GVr~AAqRkL~~ELGIp~e~v~pee~~~ltrihYkA~sdg~wGEhEiDYiL~~~~~~~----~nP-npnEv~e~ryvs~e 178 (225)
T KOG0142|consen 104 GVRRAAQRKLKAELGIPLEEVPPEEFNFLTRIHYKAPSDGIWGEHEIDYILFLVKDVT----LNP-NPNEVSEIRYVSRE 178 (225)
T ss_pred HHHHHHHHHHHHhhCCCccccCHHHcccceeeeeecCCCCCcccceeeEEEEEeccCC----CCC-ChhhhhHhheecHH
Confidence 457899999999999988742 222233322111 2 22 3334444332 233 34899999999999
Q ss_pred CCCCCch
Q psy13065 75 DLPSSRK 81 (114)
Q Consensus 75 ~lp~~~~ 81 (114)
+|-.+..
T Consensus 179 elkel~~ 185 (225)
T KOG0142|consen 179 ELKELVA 185 (225)
T ss_pred HHHHHHh
Confidence 9887766
No 96
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=63.77 E-value=7.6 Score=28.64 Aligned_cols=63 Identities=13% Similarity=0.263 Sum_probs=34.5
Q ss_pred HHHHhhhhhCceeee-----eeec-ceeeeeccCC-eEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065 12 EAKQVLEETGFDSSH-----LIAE-DSYLETTYND-QLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS 78 (114)
Q Consensus 12 AvREv~EETGl~v~~-----li~~-~~y~~~~~~~-~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~ 78 (114)
+.||+.||.|+.-.. +++. ++- ...... +.-.+|..+.-+.+.. . ...+..+++|+..++|.+
T Consensus 117 ~~REleEEv~vseqd~q~~e~lGlINdd-~neVgkVHiG~lf~~~~k~ndve--v-KEkd~~~~kwik~~ele~ 186 (203)
T COG4112 117 LERELEEEVDVSEQDLQELEFLGLINDD-TNEVGKVHIGALFLGRGKFNDVE--V-KEKDLFEWKWIKLEELEK 186 (203)
T ss_pred hHHHHHHHhCcCHHHhhhheeeeeecCC-CcccceEEEEEEEEeecccccee--e-eecceeeeeeeeHHHHHH
Confidence 789999999998432 2221 110 001111 2234455554432222 1 134678899999988876
No 97
>PF14443 DBC1: DBC1
Probab=59.51 E-value=21 Score=24.93 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=18.1
Q ss_pred CHHHHHHHHhhhhhCceeee
Q psy13065 7 MNIISEAKQVLEETGFDSSH 26 (114)
Q Consensus 7 s~~eaAvREv~EETGl~v~~ 26 (114)
..+.+|+|=+++=||+|.+.
T Consensus 41 ~LI~TAiR~~K~~tgiDLS~ 60 (126)
T PF14443_consen 41 VLIRTAIRTCKALTGIDLSN 60 (126)
T ss_pred HHHHHHHHHHHHHhccchhh
Confidence 46889999999999999985
No 98
>PF14044 NETI: NETI protein
Probab=44.89 E-value=16 Score=22.08 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=18.4
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH 26 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~ 26 (114)
.+||||+.+|..| ..+-||....
T Consensus 4 V~enETI~~CL~R--M~~eGY~Pvr 26 (57)
T PF14044_consen 4 VEENETISDCLAR--MKKEGYMPVR 26 (57)
T ss_pred ccCCCcHHHHHHH--HHHcCCCcee
Confidence 3689999999999 5566887764
No 99
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=43.52 E-value=56 Score=21.04 Aligned_cols=67 Identities=12% Similarity=0.105 Sum_probs=31.8
Q ss_pred HHHHHHHHhhhhhCceeeeeeecceeeeeccCCe-EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCch
Q psy13065 8 NIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSRK 81 (114)
Q Consensus 8 ~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~~ 81 (114)
..+++.+.+.+..|+.+...-....+.+...+.. ++++|.+... ... ..+-.+..|++.+++....-
T Consensus 38 ~~~~l~~~~~~~~~~~~~~~~~~~~v~H~fSH~~~~~~~~~~~~~-~~~------~~~~~~~~W~~~~~l~~~~~ 105 (114)
T PF14815_consen 38 DEEELEEWLEEQLGLSIRSVEPLGTVKHVFSHRRWTIHVYEVEVS-ADP------PAEPEEGQWVSLEELDQYPL 105 (114)
T ss_dssp CHHHHHHHTCCSSS-EEEE-S-SEEEEEE-SSEEEEEEEEEEEEE--SS----------TTEEEEEGGGGGGS--
T ss_pred CHHHHHHHHHHHcCCChhhheecCcEEEEccceEEEEEEEEEEec-CCC------CCCCCCcEEEEHHHHhhCCC
Confidence 3566667777888988764221112222211222 2444444322 111 11468899999999876543
No 100
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.70 E-value=2e+02 Score=20.82 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=20.6
Q ss_pred cccCCCHHHHHHHHhhhhhCceeee
Q psy13065 2 MEEIMMNIISEAKQVLEETGFDSSH 26 (114)
Q Consensus 2 ~~~~es~~eaAvREv~EETGl~v~~ 26 (114)
|+-.++.++.|+.++.+||+|.-..
T Consensus 31 ~~P~~~~~~qA~~~a~~~~dL~~~d 55 (161)
T COG5353 31 MKPYHEAEEQAIDLATEETDLATAD 55 (161)
T ss_pred cCccchhHHHHHHHHhhcccceecc
Confidence 4556788899999999999997653
No 101
>PF13680 DUF4152: Protein of unknown function (DUF4152)
Probab=31.31 E-value=26 Score=26.18 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHhhhhhCceeee
Q psy13065 5 IMMNIISEAKQVLEETGFDSSH 26 (114)
Q Consensus 5 ~es~~eaAvREv~EETGl~v~~ 26 (114)
.-...|-..+-++||||+.+-.
T Consensus 112 LskdlQPLAkkfWEetgiEIlA 133 (227)
T PF13680_consen 112 LSKDLQPLAKKFWEETGIEILA 133 (227)
T ss_pred HHHHhHHHHHHHHHhhCcEEEE
Confidence 3345677889999999999864
No 102
>PF13014 KH_3: KH domain
Probab=30.66 E-value=40 Score=18.18 Aligned_cols=16 Identities=38% Similarity=0.372 Sum_probs=13.4
Q ss_pred HHHHHhhhhhCceeee
Q psy13065 11 SEAKQVLEETGFDSSH 26 (114)
Q Consensus 11 aAvREv~EETGl~v~~ 26 (114)
+-+|++.+|||..+..
T Consensus 11 ~~I~~I~~~tg~~I~i 26 (43)
T PF13014_consen 11 STIKEIREETGAKIQI 26 (43)
T ss_pred hHHHHHHHHhCcEEEE
Confidence 3589999999999874
No 103
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=29.16 E-value=42 Score=24.96 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=15.2
Q ss_pred HHHHHHhhhhhCceeeee
Q psy13065 10 ISEAKQVLEETGFDSSHL 27 (114)
Q Consensus 10 eaAvREv~EETGl~v~~l 27 (114)
.-|+.|++||+|+.|-++
T Consensus 157 teaVk~lr~~hgI~VISL 174 (218)
T COG1707 157 TEAVKELREEHGIPVISL 174 (218)
T ss_pred HHHHHHHHHhcCCeEEEe
Confidence 358999999999999763
No 104
>PF04275 P-mevalo_kinase: Phosphomevalonate kinase ; InterPro: IPR005919 Phosphomevalonate kinase (2.7.4.2 from EC) catalyzes the phosphorylation of 5-phosphomevalonate into 5-diphosphomevalonate, an essential step in isoprenoid biosynthesis via the mevalonate pathway. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the higher eukaryotic form and the ERG8 type. This model represents the form of the enzyme found in animals. ; GO: 0004631 phosphomevalonate kinase activity, 0006695 cholesterol biosynthetic process, 0005737 cytoplasm; PDB: 3CH4_B.
Probab=27.48 E-value=34 Score=23.53 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=13.0
Q ss_pred CCHHHHHHHHhhhhhCceeeeeeeccee
Q psy13065 6 MMNIISEAKQVLEETGFDSSHLIAEDSY 33 (114)
Q Consensus 6 es~~eaAvREv~EETGl~v~~li~~~~y 33 (114)
-++-+..+||-.++||++...|++-..|
T Consensus 28 v~iS~p~K~~yA~~~glDl~~LL~d~~Y 55 (116)
T PF04275_consen 28 VSISDPIKREYAEAHGLDLDRLLSDRAY 55 (116)
T ss_dssp E-THHHHHHHHHHTTT------------
T ss_pred EEechHHHHHHHHHhCcCHHHHhcCcch
Confidence 3566888999999999999987754433
No 105
>KOG2937|consensus
Probab=25.04 E-value=20 Score=28.99 Aligned_cols=71 Identities=14% Similarity=0.075 Sum_probs=41.0
Q ss_pred CCHHHHHHHHhhhhhCceeeeeeecc-eeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065 6 MMNIISEAKQVLEETGFDSSHLIAED-SYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR 80 (114)
Q Consensus 6 es~~eaAvREv~EETGl~v~~li~~~-~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~ 80 (114)
+...-|+.+++++|+++++..-++.. .+. -+..+.-++...+..+.....+...++.+..||+...+-...
T Consensus 206 k~~~~~~~l~vlkk~~~k~~~~vak~~e~~----~~~~tl~~~~t~v~~d~~~~aqS~~~~~e~~~~~~~k~sr~e 277 (348)
T KOG2937|consen 206 KNYMVCPFLRVLKKWILKADEVVAKFPEKK----STVPTLGAALTDVEMDHVVTAQSYFAKPENWTFPKGKISRGE 277 (348)
T ss_pred hhcccchHHHHHHHHHHhccchhhcCcccC----ccchhHHhhhhccccccceeecccccccccccCcccccccCC
Confidence 44567999999999999998643321 111 111111122223333334445566788888999886665544
No 106
>KOG3904|consensus
Probab=24.76 E-value=38 Score=25.58 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=14.0
Q ss_pred HHHHHHHhhhhhCceee
Q psy13065 9 IISEAKQVLEETGFDSS 25 (114)
Q Consensus 9 ~eaAvREv~EETGl~v~ 25 (114)
...|+||.+||.|+-.-
T Consensus 26 rltAire~feE~gillC 42 (209)
T KOG3904|consen 26 RLTAIRETFEEVGILLC 42 (209)
T ss_pred ccHHHHHHHhhhheeEE
Confidence 35799999999998653
No 107
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=23.55 E-value=62 Score=19.05 Aligned_cols=15 Identities=33% Similarity=0.565 Sum_probs=12.9
Q ss_pred HHHHHhhhhhCceee
Q psy13065 11 SEAKQVLEETGFDSS 25 (114)
Q Consensus 11 aAvREv~EETGl~v~ 25 (114)
.-+|++.|+||..+.
T Consensus 22 ~~ik~I~~~tg~~I~ 36 (61)
T cd02393 22 KTIKKIIEETGVKID 36 (61)
T ss_pred hHHHHHHHHHCCEEE
Confidence 357999999999986
No 108
>PF08053 Tna_leader: Tryptophanese operon leader peptide; InterPro: IPR012620 This entry defines the apparent leader peptides of tryptophanase operons in Escherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae, and related species. It has been suggested that these peptides act in cis to alter the behaviour of the translating ribosome []. The tryptophanese (tna) operon leader peptide catalyses the degradation of L-tryptophan to indole, pyruvate and ammonia, enabling the bacteria to utilise tryptophan as a source of carbon, nitrogen and energy. The tna operon of Escherichia coli contains two major structural genes, tnaA and tnaB. Preceding tnaA in the tna operon is a 319 -nucleotide transcribed regulatory region that contains the coding region for a 24-residue leader peptide, TnaC. The RNA sequence in the vicinity of the tnaC stop codon is rich in Cytidylate residues which is required for efficient Rho -dependent termination in the leader region of the tna operon [].; GO: 0031554 regulation of transcription termination, DNA-dependent, 0031556 transcriptional attenuation by ribosome
Probab=23.25 E-value=50 Score=16.10 Aligned_cols=8 Identities=38% Similarity=1.174 Sum_probs=6.1
Q ss_pred eEEEeCCC
Q psy13065 68 CQWFPIGD 75 (114)
Q Consensus 68 i~Wf~id~ 75 (114)
-+||.+|.
T Consensus 10 skwfnidn 17 (24)
T PF08053_consen 10 SKWFNIDN 17 (24)
T ss_pred eeeEeccC
Confidence 48999875
No 109
>PRK09806 tryptophanase leader peptide; Provisional
Probab=20.80 E-value=60 Score=16.11 Aligned_cols=8 Identities=38% Similarity=1.174 Sum_probs=6.2
Q ss_pred eEEEeCCC
Q psy13065 68 CQWFPIGD 75 (114)
Q Consensus 68 i~Wf~id~ 75 (114)
-+||.+|.
T Consensus 10 skwfnidn 17 (26)
T PRK09806 10 SKWFNIDN 17 (26)
T ss_pred eeEEeccC
Confidence 48999875
Done!