RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13065
(114 letters)
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay,
cytoplasm, hydrolase, manganese, metal-binding, mRNA
processing; NMR {Saccharomyces cerevisiae}
Length = 146
Score = 79.5 bits (196), Expect = 1e-20
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 16 VLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGD 75
V EE GFD + I ++ ++E + +++LI GV F F PQ R EI +WF
Sbjct: 51 VKEEIGFDLTDYIDDNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRNEIDKIEWFDFKK 110
Query: 76 LPSSRKEIKTVLINGTPVGTNAFFMIMPFINSINI 110
+ + + +++I + +++
Sbjct: 111 ISKTMYK-----------SNIKYYLINSMMRPLSM 134
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A
{Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7
PDB: 2qkm_B*
Length = 271
Score = 80.8 bits (199), Expect = 6e-20
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 16 VLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGD 75
V EETGFD S I + +++ T Q RLY+IPG+ +D +F +TR EI +W + D
Sbjct: 149 VYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMD 208
Query: 76 LPSSRKEIKTVLINGTPVGTNAFFMIMPFINSI 108
LP+ +K + N F+M++PF+ +
Sbjct: 209 LPTFKKNKPQTMK-------NKFYMVIPFLAPL 234
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix,
hydrolase, GFG, GFG-1, FGF2AS, structural GENO
structural genomics consortium, SGC; HET: FLC; 1.70A
{Homo sapiens}
Length = 199
Score = 39.1 bits (91), Expect = 7e-05
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 16 VLEETGFDS--SHLIAEDSYLETTYNDQLTRLYLIPGV-PIDFKFAPQTRGEIKACQWFP 72
V EETG S +++ + +Y+I + P F E C+W
Sbjct: 75 VFEETGIKSEFRSVLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQE-ECLRCEWMD 133
Query: 73 IGDLPS 78
+ DL
Sbjct: 134 LNDLAK 139
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP:
d.113.1.1
Length = 153
Score = 36.0 bits (83), Expect = 7e-04
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 15 QVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLI-PGVPIDFKFAPQTRGEIKACQWFPI 73
+VLEETG + Y T ++ T L G + F + I WF I
Sbjct: 55 EVLEETGHSFLPEVLTGIYHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSI 114
Query: 74 GDLPSSRKEIKTVLI 88
++ + + +T L+
Sbjct: 115 DEIRAKQAMHRTPLV 129
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18;
NUDT18, NXR1, nucleotide hydrolase, hydrolase,
structural genomics; 2.10A {Homo sapiens}
Length = 156
Score = 34.3 bits (79), Expect = 0.003
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 8/66 (12%)
Query: 16 VLEETGFDSSHLIAEDSYLETTYND---QLTRLYLIPGVPIDFKFAPQTRGEIKACQWFP 72
V EE G L E L + + ++L K + + E W+P
Sbjct: 69 VKEEAG-----LHCEPETLLSVEERGPSWVRFVFLARPTGGILKTSKEADAESLQAAWYP 123
Query: 73 IGDLPS 78
LP+
Sbjct: 124 RTSLPT 129
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer,
putative NUDI hydrolase, structural genomics, unknown
function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1
PDB: 1jrk_A 1k26_A
Length = 156
Score = 33.7 bits (77), Expect = 0.005
Identities = 10/73 (13%), Positives = 25/73 (34%), Gaps = 10/73 (13%)
Query: 16 VLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVP---------IDFKF-APQTRGEI 65
EETG + ++ ++ L ++ V D + + G++
Sbjct: 46 FEEETGIVVEPIGFTYGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDL 105
Query: 66 KACQWFPIGDLPS 78
K +W + ++
Sbjct: 106 KNGEWIDVREIDR 118
>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A
hydrolase, alpha-beta; NMR {Homo sapiens} SCOP:
d.113.1.1 PDB: 1xsb_A 1xsc_A*
Length = 153
Score = 33.6 bits (77), Expect = 0.006
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 9/79 (11%)
Query: 16 VLEETGFDSSHLIAEDSYLETTY-----NDQLTRLYLIPGVPIDFKFAPQTRGEIKACQW 70
EE G ++ L + + + +L D + E +A +W
Sbjct: 64 TQEEAGIEAGQLTIIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRLSH--EHQAYRW 121
Query: 71 FPIGDLPS--SRKEIKTVL 87
+ + KE+K L
Sbjct: 122 LGLEEACQLAQFKEMKAAL 140
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER
HB8, hydrolase, riken structural genomics/proteomics
initia RSGI; 1.70A {Thermus thermophilus} SCOP:
d.113.1.1 PDB: 1vc8_A 1vc9_A*
Length = 126
Score = 32.3 bits (74), Expect = 0.010
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 16 VLEETGFDSS--HLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI 73
V EETG + + Y+ ++ +L+ + AP+ + WF
Sbjct: 47 VWEETGVRAEVLLPLYPTRYVNPKGVEREVHWFLM-----RGEGAPRLEEGMTGAGWFSP 101
Query: 74 GDLPS--SRKEIKTVL 87
+ + + E +L
Sbjct: 102 EEARALLAFPEDLGLL 117
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium
cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP:
d.113.1.1 PDB: 1kt9_A*
Length = 138
Score = 31.8 bits (73), Expect = 0.021
Identities = 13/85 (15%), Positives = 21/85 (24%), Gaps = 22/85 (25%)
Query: 16 VLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPI-----------DFKFAPQTRGE 64
EE L + ET + Y G P E
Sbjct: 53 TKEEANITKEQLTIHEDCHETLF-------YEAKGKPKSVKYWLAKLNNPDDVQLSH--E 103
Query: 65 IKACQWFPIGDLPS--SRKEIKTVL 87
+ +W + D E+ ++L
Sbjct: 104 HQNWKWCELEDAIKIADYAEMGSLL 128
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate,
structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex
aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Length = 134
Score = 31.8 bits (73), Expect = 0.022
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 11/79 (13%)
Query: 16 VLEETGFDSS--HLIAEDSYLETTYNDQL---TRLYLIPGVPIDFKFAPQTRGEIKACQW 70
V EETG I E Y T +++ + YL + + P E+K ++
Sbjct: 48 VWEETGVKGEILDYIGEIHYWYTLKGERIFKTVKYYL--MKYKEGEPRPSW--EVKDAKF 103
Query: 71 FPIGDLPS--SRKEIKTVL 87
FPI + K K +
Sbjct: 104 FPIKEAKKLLKYKGDKEIF 122
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II),
NYSGXRC, structural genomics; 2.02A {Clostridium
perfringens atcc 13124}
Length = 159
Score = 31.5 bits (71), Expect = 0.034
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 19/85 (22%)
Query: 13 AKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTR---------- 62
++ EE G + + D L+ + + +L + P I +P
Sbjct: 48 IREAKEEAGLNVTLYNPIDINLKKSCDLSGEKLLINPIHTILGDVSPNHSHIDFVYYATT 107
Query: 63 ---------GEIKACQWFPIGDLPS 78
GE K +W+ DL +
Sbjct: 108 TSFETSPEIGESKILKWYSKEDLKN 132
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2,
protein structure initiative; 1.70A {Chromobacterium
violaceum}
Length = 163
Score = 31.4 bits (71), Expect = 0.036
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 8/62 (12%)
Query: 16 VLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGD 75
+ EETG + ++ + T +N L + G P + + EI+ D
Sbjct: 60 IREETGLRINSMLYLFDH-ITPFNAHKVYLCIAQGQP-------KPQNEIERIALVSSPD 111
Query: 76 LP 77
Sbjct: 112 TD 113
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP
binding, dephosphorylation; 2.50A {Escherichia coli}
PDB: 3dku_A
Length = 153
Score = 30.9 bits (70), Expect = 0.050
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 13 AKQVLEETGFDSS--HLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRG-EIKACQ 69
A+++ EETG + H I + D+ L + + ++ Q +I C+
Sbjct: 49 ARELWEETGISAQPQHFIRMHQW---IAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCR 105
Query: 70 WFPIGDLPSS 79
W ++ +
Sbjct: 106 WVSAEEILQA 115
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich,
structural genomics, BSGC structure funded by NIH; 1.39A
{Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A
1su2_A* 1sz3_A*
Length = 159
Score = 29.8 bits (67), Expect = 0.13
Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 11/69 (15%)
Query: 16 VLEETGFDSSHLIAEDSYL---ETTYNDQLTR---LYLIPGVPIDFKFAPQTRGEIKACQ 69
EETG + +L + D + ++L P AP EI
Sbjct: 66 ACEETGLR----VRPVKFLGAYLGRFPDGVLILRHVWLAEPEPGQTL-APAFTDEIAEAS 120
Query: 70 WFPIGDLPS 78
+ D
Sbjct: 121 FVSREDFAQ 129
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2,
protein structure initiative; 2.50A {Bacillus
halodurans}
Length = 188
Score = 28.1 bits (63), Expect = 0.49
Identities = 8/65 (12%), Positives = 18/65 (27%), Gaps = 2/65 (3%)
Query: 16 VLEETGFD--SSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI 73
EETG + L S + ++ L + + + +W
Sbjct: 49 YWEETGITVKNPELKGIFSMVIFDEGKIVSEWMLFTFKATEHEGEMLKQSPEGKLEWKKK 108
Query: 74 GDLPS 78
++
Sbjct: 109 DEVLE 113
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics,
joint center for structural genomics, J protein
structure initiative; 2.27A {Streptococcus suis}
Length = 206
Score = 28.2 bits (63), Expect = 0.50
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 13 AKQVLEETGFD--SSHLIAEDSYLETTYNDQLTRLYLI--PGVPIDFKFAPQTRGEIKAC 68
K+V EE G D + ++A + R+ + + +F P + E A
Sbjct: 111 VKEVKEEAGLDVEAQRVVAILDKHKNNPAKSAHRVTKVFILCRLLGGEFQPNS--ETVAS 168
Query: 69 QWFPIGDLP 77
+F + DLP
Sbjct: 169 GFFSLDDLP 177
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima
dehydrogenase; shikimate, NADPH, dehydroshikimate,
bifunctional enzyme; HET: DHK TLA NAP; 1.78A
{Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Length = 523
Score = 28.1 bits (63), Expect = 0.53
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 68 CQWFPIGDLPSSRKEIKTVLINGTPVG 94
+ + DL + E VL N T +G
Sbjct: 409 GKALSLTDLDNYHPEDGMVLANTTSMG 435
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 1.80A {Aquifex aeolicus}
Length = 139
Score = 27.6 bits (62), Expect = 0.56
Identities = 9/75 (12%), Positives = 26/75 (34%), Gaps = 22/75 (29%)
Query: 16 VLEETGFDSSHLIAEDSYLE--TTYND--------QLTRLYLIPGVPIDFKFAPQTRGEI 65
+ EETG E + Y+D ++ +++ + + +
Sbjct: 60 MREETG-------LEVRLHKLMGVYSDPERDPRAHVVSVVWI---GDAQGEPKAGS--DA 107
Query: 66 KACQWFPIGDLPSSR 80
K + + + ++P +
Sbjct: 108 KKVKVYRLEEIPLDK 122
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics,
MCSG; 1.63A {Streptococcus pneumoniae}
Length = 154
Score = 27.4 bits (61), Expect = 0.74
Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 16 VLEETGFDSSHL----IAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWF 71
V EE G + + E+ + + + + + D Q + + C+W
Sbjct: 62 VKEELGVKAQAGQLAFVVENRFEVDGVSYHNIEFHYLVDLLEDAPLTMQEDEKRQPCEWI 121
Query: 72 PIGDLPS 78
+ L +
Sbjct: 122 DLDKLQN 128
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA
exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus
cereus} PDB: 3q4i_A
Length = 205
Score = 27.0 bits (60), Expect = 1.1
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 12/69 (17%)
Query: 16 VLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFA-------PQTRGEIKAC 68
V EETG + L ++ + + +T E +
Sbjct: 113 VFEETG-----YEVDHFKLLAIFDKEKHQPSPSATHVYKIFIGCEIIGGEKKTSIETEEV 167
Query: 69 QWFPIGDLP 77
++F +LP
Sbjct: 168 EFFGENELP 176
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure
initiative II(PSI II), nysgxrc; 1.76A {Bacillus
thuringiensis str} PDB: 3smd_A
Length = 153
Score = 26.7 bits (59), Expect = 1.3
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 18/77 (23%)
Query: 13 AKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDF------------KFAPQ 60
++V EETG + + + + R G +++ +
Sbjct: 63 VREVWEETGLK-----VQVKKQKGVFGGKEYRYTYSNGDEVEYIVVVFECEVTSGELRSI 117
Query: 61 TRGEIKACQWFPIGDLP 77
GE Q+F + + P
Sbjct: 118 D-GESLKLQYFSLSEKP 133
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.20A {Listeria innocua}
Length = 187
Score = 26.7 bits (59), Expect = 1.5
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Query: 16 VLEETGFDSSHLIAEDSYLETTYNDQ---LTRLYLIPGVPIDFKFAPQTRGEIKACQWFP 72
+ EET LI + + + + ++R + VP + + FP
Sbjct: 90 LEEETSLTDIPLIPFGVFDKPGRDPRGWIISRAFYAI-VPPEALEKRAAGDDAAEIGLFP 148
Query: 73 IGDLPSSR 80
+ +
Sbjct: 149 MTEALELP 156
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei
structure initiative; 2.00A {Nitrosomonas europaea atcc
19718}
Length = 189
Score = 26.6 bits (59), Expect = 1.9
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 13/66 (19%)
Query: 16 VLEETGFDSSHLIAEDSYLETTYN----DQLTRLYLIPGVPIDFKFAPQTRGEIKACQWF 71
LEE E L Y+ Q+ L+ + +DF E + F
Sbjct: 88 TLEEAN-----ARVEIRELYAVYSLPHISQVYMLFRAKLLDLDFFPGI----ESLEVRLF 138
Query: 72 PIGDLP 77
++P
Sbjct: 139 GEQEIP 144
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II),
NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium
perfringens atcc 13124}
Length = 197
Score = 26.2 bits (57), Expect = 2.4
Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 12/78 (15%)
Query: 13 AKQVLEETGFDSSHLIAED--SYLETTYNDQLTRLYLIPG-VPIDFKFAPQTRG------ 63
K++ EETG + + + + T N + R + + ++ + +
Sbjct: 89 IKELKEETGVKNPTPLLDKAFALDVLTVNGHIKRGKYVSSHLHLNLTYLIECSEDETLML 148
Query: 64 ---EIKACQWFPIGDLPS 78
E W P ++
Sbjct: 149 KEDENSGVMWIPFNEISK 166
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.50A
{Burkholderia pseudomallei}
Length = 157
Score = 25.8 bits (57), Expect = 2.8
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 21/74 (28%)
Query: 16 VLEETGFDSSHLIAEDSYLETTYNDQ--------LTRLYL---IPGVPIDFKFAPQTRGE 64
+ EE G + E + L + + +YL G P
Sbjct: 77 IEEELG-----IALERATLLCVVDHIDAANGEHWVAPVYLAHAFSGEP-----RVVEPDR 126
Query: 65 IKACQWFPIGDLPS 78
+A WF + DLP
Sbjct: 127 HEALGWFALDDLPQ 140
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics
consortium, structural genomics, protein structure
initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP:
c.6.2.5
Length = 252
Score = 26.0 bits (58), Expect = 3.2
Identities = 4/11 (36%), Positives = 8/11 (72%)
Query: 101 IMPFINSINIA 111
++ ++S NIA
Sbjct: 19 LLTLVSSANIA 29
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein,
structural genomics, NPPSFA; 1.90A {Thermus
thermophilus} SCOP: c.6.2.5
Length = 250
Score = 25.9 bits (58), Expect = 3.3
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 101 IMPFINSINIA 111
I P ++S N+A
Sbjct: 24 IFPLVSSANLA 34
>3som_A Methylmalonic aciduria and homocystinuria type C; structural
genomics, structural genomics consortium, SGC, CB
organic aciduria; HET: MSE B12 FLC 5AD; 2.40A {Homo
sapiens}
Length = 286
Score = 25.9 bits (56), Expect = 3.4
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIP 49
ME + + + + L GF+ YN+ L + +P
Sbjct: 5 MEPKVAELKQKIEDTLCPFGFEVYPFQVAW------YNELLPPAFHLP 46
>2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A
{Pseudomonas aeruginosa} PDB: 2xu2_A*
Length = 252
Score = 25.6 bits (57), Expect = 3.4
Identities = 4/11 (36%), Positives = 7/11 (63%)
Query: 101 IMPFINSINIA 111
MP ++ N+A
Sbjct: 30 SMPLVDQANLA 40
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization
protein, structural genomics; 1.70A {Pyrococcus
horikoshii} SCOP: c.6.2.5
Length = 255
Score = 25.6 bits (57), Expect = 3.7
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 101 IMPFINSINIA 111
+M +I S N+A
Sbjct: 24 VMKYITSANVA 34
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid; HET: NAD;
1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A*
1vi2_A*
Length = 312
Score = 25.3 bits (56), Expect = 5.0
Identities = 7/39 (17%), Positives = 11/39 (28%), Gaps = 1/39 (2%)
Query: 56 KFAPQTRGEIKACQWFPIGDLPSSRKEIKTVLINGTPVG 94
+ T + + +L NGT VG
Sbjct: 194 RVNENTDCVVTVTDLADQHAFTEALASA-DILTNGTKVG 231
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual
domains, hydrolase; HET: AMP; 2.30A {Francisella
tularensis} PDB: 2r5w_B
Length = 352
Score = 24.9 bits (54), Expect = 6.7
Identities = 9/77 (11%), Positives = 24/77 (31%), Gaps = 9/77 (11%)
Query: 15 QVLEETGFDSSHLIAEDSY-LETTYNDQ--------LTRLYLIPGVPIDFKFAPQTRGEI 65
++ EET + +H + E ++ ++ + L +
Sbjct: 255 ELFEETNINLTHEQLAIAKRCEKVFDYPDRSVRGRTISHVGLFVFDQWPSLPEINAADDA 314
Query: 66 KACQWFPIGDLPSSRKE 82
K +W +G + +
Sbjct: 315 KDVKWISLGSNIKNICD 331
>3sc0_A Methylmalonic aciduria and homocystinuria type C; mmachc, CBLC,
cobalamin, flavin, glutathione, flavin reducta
oxidoreductase, maturase; HET: COB; 1.95A {Homo
sapiens} PDB: 3sbz_A 3sby_A
Length = 241
Score = 25.1 bits (54), Expect = 6.9
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIP 49
ME + + + + L GF+ YN+ L + +P
Sbjct: 4 MEPKVAELKQKIEDTLCPFGFEVYPFQVAW------YNELLPPAFHLP 45
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein
structure initiative; HET: NAP; 2.35A
{Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Length = 287
Score = 24.8 bits (55), Expect = 7.1
Identities = 6/34 (17%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 63 GEIKACQWFPIGDLPSSRKEIKT--VLINGTPVG 94
E ++ ++ ++IN TP+G
Sbjct: 171 AEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIG 204
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid; HET: NAD SKM; 1.45A
{Listeria monocytogenes} PDB: 3toz_A*
Length = 315
Score = 24.9 bits (55), Expect = 7.4
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 1/39 (2%)
Query: 56 KFAPQTRGEIKACQWFPIGDLPSSRKEIKTVLINGTPVG 94
K +T + + L E + N T VG
Sbjct: 200 KINSKTDCKAQLFDIEDHEQLRKEIAES-VIFTNATGVG 237
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.402
Gapped
Lambda K H
0.267 0.0691 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,735,657
Number of extensions: 90713
Number of successful extensions: 313
Number of sequences better than 10.0: 1
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 44
Length of query: 114
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 37
Effective length of database: 4,551,876
Effective search space: 168419412
Effective search space used: 168419412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)