RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13065
(114 letters)
>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic
domain {Schizosaccharomyces pombe [TaxId: 4896]}
Length = 151
Score = 66.3 bits (161), Expect = 1e-15
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 13 AKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFP 72
++V EETGFD S I + +++ T Q RLY+IPG+ +D +F +TR EI +W
Sbjct: 47 IREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHN 106
Query: 73 IGDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSI 108
+ DLP+ +K + N F+M++PF+ +
Sbjct: 107 LMDLPTFKKNKPQTMK-------NKFYMVIPFLAPL 135
>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 158
Score = 31.7 bits (71), Expect = 0.009
Identities = 15/78 (19%), Positives = 20/78 (25%), Gaps = 6/78 (7%)
Query: 3 EEIMMNIISEAKQVLEETGFDSS--HLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQ 60
E + EA EETG + L ++L P AP
Sbjct: 55 ENPQDAAVREAC---EETGLRVRPVKFLGAYLGRFPDGVLILRHVWLAEPEPGQ-TLAPA 110
Query: 61 TRGEIKACQWFPIGDLPS 78
EI + D
Sbjct: 111 FTDEIAEASFVSREDFAQ 128
>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate
phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 30.9 bits (69), Expect = 0.019
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 2/77 (2%)
Query: 1 MMEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQ 60
ME ++ ++V EE G + + E T +Y++ V +
Sbjct: 45 GMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIF-ENQERKHRTYVYVLI-VTEVLEDWED 102
Query: 61 TRGEIKACQWFPIGDLP 77
+ + +WF I D
Sbjct: 103 SVNIGRKREWFKIEDAI 119
>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia
coli [TaxId: 562]}
Length = 161
Score = 30.5 bits (68), Expect = 0.023
Identities = 10/78 (12%), Positives = 22/78 (28%), Gaps = 6/78 (7%)
Query: 1 MMEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQ 60
E+++ + EA+ EE G + N ++ F
Sbjct: 70 ADEQLLESARREAE---EELGIAGVPFAEHGQFYFEDKNCRVWGALFSCVSHGPFALQE- 125
Query: 61 TRGEIKACQWFPIGDLPS 78
E+ W ++ +
Sbjct: 126 --DEVSEVCWLTPEEITA 141
>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose
pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 292
Score = 29.7 bits (66), Expect = 0.066
Identities = 10/65 (15%), Positives = 16/65 (24%), Gaps = 6/65 (9%)
Query: 19 ETGFDSSHLIAEDSYLETTYNDQLTR------LYLIPGVPIDFKFAPQTRGEIKACQWFP 72
F HL+ Y++ N Y I + + +W
Sbjct: 196 HKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVD 255
Query: 73 IGDLP 77
I D
Sbjct: 256 INDKL 260
>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079
{Deinococcus radiodurans str. R1 (Deinococcus
radiodurans R1) [TaxId: 243230]}
Length = 162
Score = 28.6 bits (63), Expect = 0.13
Identities = 8/65 (12%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Query: 14 KQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI 73
++ EE + L + + L+ + + D +I +W
Sbjct: 78 REAREELNVEIDALSWRPLASFSPFQTTLSSFMCVYELRSDATPIFNP-NDISGGEWLTP 136
Query: 74 GDLPS 78
L +
Sbjct: 137 EHLLA 141
>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African
clawed frog (Xenopus laevis) [TaxId: 8355]}
Length = 196
Score = 28.5 bits (63), Expect = 0.14
Identities = 15/110 (13%), Positives = 36/110 (32%), Gaps = 14/110 (12%)
Query: 13 AKQVLEETGFDSSHL-IAEDSYLETTYNDQLTRL----YLIPGVPIDF----KFAPQTR- 62
+++ EE G + + + ED Y + + + Y+ + A +
Sbjct: 74 KRELEEELGPALATVEVTEDDYRSSQVREHPQKCVTHFYIKELKLEEIERIEAEAVNAKD 133
Query: 63 --GEIKACQWFPIGDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSINI 110
E+ P+ L + L N N+ ++ + S+ +
Sbjct: 134 HGLEVMGLIRVPLYTLRDRVGGLPAFLCN--NFIGNSKSQLLYALRSLKL 181
>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184
{Nitrosomonas europaea [TaxId: 915]}
Length = 146
Score = 27.8 bits (61), Expect = 0.19
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 3 EEIMMNIISEAKQVLEETGFDSSHLIAEDSYLET-TYNDQLTRLYLIPGVPIDFKFAPQT 61
E I+ E VLEETG + Y T N + G + F +
Sbjct: 41 ESIIQACSRE---VLEETGHSFLPEVLTGIYHWTCASNGTTYLRFTFSGQVVSFDPDRKL 97
Query: 62 RGEIKACQWFPIGDLPSSRKEIKTVLI 88
I WF I ++ + + +T L+
Sbjct: 98 DTGIVRAAWFSIDEIRAKQAMHRTPLV 124
>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus
thermophilus [TaxId: 274]}
Length = 126
Score = 26.9 bits (59), Expect = 0.45
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 13 AKQVLEETGFDSSHL--IAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQW 70
++V EETG + L + Y+ ++ +L+ + AP+ + W
Sbjct: 44 VREVWEETGVRAEVLLPLYPTRYVNPKGVEREVHWFLM-----RGEGAPRLEEGMTGAGW 98
Query: 71 FPIGDLPS 78
F + +
Sbjct: 99 FSPEEARA 106
>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 152
Score = 26.8 bits (58), Expect = 0.52
Identities = 12/87 (13%), Positives = 31/87 (35%), Gaps = 10/87 (11%)
Query: 2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVP--------- 52
+E I + ++ EETG + ++ ++ L ++ V
Sbjct: 32 VEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPLVILEEVVKYPEETHIH 91
Query: 53 IDFKF-APQTRGEIKACQWFPIGDLPS 78
D + + G++K +W + ++
Sbjct: 92 FDLIYLVKRVGGDLKNGEWIDVREIDR 118
>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia
coli [TaxId: 562]}
Length = 131
Score = 26.6 bits (58), Expect = 0.59
Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 3/74 (4%)
Query: 4 EIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRG 63
E+ + + + E + + + L ++ D P
Sbjct: 37 EVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGDIVIDP---K 93
Query: 64 EIKACQWFPIGDLP 77
E+ W+ DLP
Sbjct: 94 ELLEANWYRYDDLP 107
>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase
Hmth1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 156
Score = 25.4 bits (55), Expect = 1.5
Identities = 12/96 (12%), Positives = 28/96 (29%), Gaps = 12/96 (12%)
Query: 16 VLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGD 75
+ EE+G + + + + + + + + P E++ C WF +
Sbjct: 53 LQEESGLTVDA-LHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVESDEMRPC-WFQLDQ 110
Query: 76 LPSSR-----KEIKTVLINGTPVGTNAFFMIMPFIN 106
+P +L+ F F
Sbjct: 111 IPFKDMWPDDSYWFPLLLQKKK-----FHGYFKFQG 141
>d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit
{Yeast (Candida albicans) [TaxId: 5476]}
Length = 245
Score = 24.8 bits (53), Expect = 2.9
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 48 IPGVPIDFKFAPQTRGEI-KACQW----FPIGDLPSS--RKEIKTVLIN 89
IPG +D + + R + + FP G P S R+ ++ L+
Sbjct: 12 IPGNKLDEEETKELRLMVAELLGRRNTGFP-GSQPVSFERRHLEETLMQ 59
>d1xw8a_ c.6.2.5 (A:) Hypothetical protein YbgL {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 24.9 bits (54), Expect = 2.9
Identities = 4/11 (36%), Positives = 8/11 (72%)
Query: 101 IMPFINSINIA 111
++ ++S NIA
Sbjct: 19 LLTLVSSANIA 29
>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A
hydrolase) {Caenorhabditis elegans [TaxId: 6239]}
Length = 137
Score = 24.5 bits (52), Expect = 3.0
Identities = 11/79 (13%), Positives = 26/79 (32%), Gaps = 4/79 (5%)
Query: 13 AKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPG--VPIDFKFAPQTRGEIKACQW 70
++ EE L + ET + + + + ++ Q E + +W
Sbjct: 49 IRETKEEANITKEQLTIHEDCHETLFYEAKGKPKSVKYWLAKLNNPDDVQLSHEHQNWKW 108
Query: 71 FPIGDLPS--SRKEIKTVL 87
+ D E+ ++L
Sbjct: 109 CELEDAIKIADYAEMGSLL 127
>d1v6ta_ c.6.2.5 (A:) Hypothetical protein PH0986 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 254
Score = 24.5 bits (53), Expect = 3.5
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 101 IMPFINSINIA 111
+M +I S N+A
Sbjct: 24 VMKYITSANVA 34
>d2dfaa1 c.6.2.5 (A:1-250) Hypothetical protein TTHB195 {Thermus
thermophilus [TaxId: 274]}
Length = 250
Score = 24.1 bits (52), Expect = 4.1
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 101 IMPFINSINIA 111
I P ++S N+A
Sbjct: 24 IFPLVSSANLA 34
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein
1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 24.5 bits (51), Expect = 4.6
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 69 QWFPIGDLPSSRKEIKTVLING 90
W + DL R + ++ G
Sbjct: 30 TWLRLADLQVPRSGLAGCVVGG 51
>d1lbua1 a.20.1.1 (A:1-83) Zn2+ DD-carboxypeptidase, N-terminal
domain {Streptomyces albus G [TaxId: 1962]}
Length = 83
Score = 23.4 bits (50), Expect = 4.9
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 41 QLTRL-YLIPGVPIDFKFAPQTRGEIKACQW 70
++ + ID +F P T+ ++ Q
Sbjct: 25 RVAGYPGTGAQLAIDGQFGPATKAAVQRFQS 55
>d1so2a_ a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic
phosphodiesterase B, pde3b {Human (Homo sapiens) [TaxId:
9606]}
Length = 415
Score = 24.3 bits (52), Expect = 4.9
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 4 EIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQ 41
E+M ++ A + G ++ L+A ++ YND+
Sbjct: 152 ELMALYVAAAMHDYDHPGRTNAFLVATNAPQAVLYNDR 189
>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal
domain {Enterococcus faecalis [TaxId: 1351]}
Length = 202
Score = 24.0 bits (51), Expect = 5.8
Identities = 3/19 (15%), Positives = 5/19 (26%)
Query: 59 PQTRGEIKACQWFPIGDLP 77
+ K WF +
Sbjct: 135 LIAGDDAKEVHWFNLERHG 153
>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115)
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 155
Score = 23.6 bits (50), Expect = 6.1
Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 7/79 (8%)
Query: 2 MEEIMMNIISEAKQVLEETGFD--SSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAP 59
+E S +++ EETG + L+ ++ T + Y +
Sbjct: 45 VENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLDTGGRYIVICYKATEFSGTLQ--- 101
Query: 60 QTRGEIKACQWFPIGDLPS 78
E W +P+
Sbjct: 102 --SSEEGEVSWVQKDQIPN 118
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.402
Gapped
Lambda K H
0.267 0.0483 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 425,501
Number of extensions: 17733
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 26
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.5 bits)