BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13066
(115 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 69/84 (82%), Positives = 74/84 (88%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE +RK+FIGGLDYRTTDESL+ FEQWGEIVDVVVMKDP TKRSRGFGFITYS A MV
Sbjct: 12 EPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMV 71
Query: 72 DDAMSNRPHNIDGRVVETKRAVPR 95
DDA + RPH +DGRVVE KRAVPR
Sbjct: 72 DDAQNARPHKVDGRVVEPKRAVPR 95
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 54/93 (58%)
Query: 3 PRYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGF 62
PR + + +++K+F+GG+ + L+ +F+Q+G +V ++ D T++ RGF F
Sbjct: 94 PRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAF 153
Query: 63 ITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPR 95
+ + + VD +R H I G+ ++ K+A+P+
Sbjct: 154 VEFDDYDPVDKICLSRNHQIRGKHIDVKKALPK 186
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila
melanogaster GN=Hrb98DE PE=2 SV=1
Length = 365
Score = 145 bits (366), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 75/86 (87%)
Query: 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAK 69
TEPE +RK+FIGGLDYRTTDE+L+A FE+WG IVDVVVMKDP TKRSRGFGFITYS +
Sbjct: 24 ITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSS 83
Query: 70 MVDDAMSNRPHNIDGRVVETKRAVPR 95
M+D+A +RPH IDGRVVE KRAVPR
Sbjct: 84 MIDEAQKSRPHKIDGRVVEPKRAVPR 109
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 56/93 (60%)
Query: 3 PRYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGF 62
PR D +++K+F+G L ++S++ +F+ +G IVD+ ++ D T + RGF F
Sbjct: 108 PRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAF 167
Query: 63 ITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPR 95
+ + + VD + + H ++G++V+ K+A+P+
Sbjct: 168 VEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPK 200
>sp|P48810|RB87F_DROME Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila
melanogaster GN=Hrb87F PE=2 SV=2
Length = 385
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/92 (73%), Positives = 78/92 (84%), Gaps = 1/92 (1%)
Query: 5 YDDSK-CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
YDD + TEPE LRK+FIGGLDYRTTD+ L+A FE+WG IVDVVVMKDP TKRSRGFGFI
Sbjct: 11 YDDGEEITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFI 70
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPR 95
TYS++ M+D+A + RPH IDGR VE KRAVPR
Sbjct: 71 TYSQSYMIDNAQNARPHKIDGRTVEPKRAVPR 102
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 53/93 (56%)
Query: 3 PRYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGF 62
PR + +++K+F+GGL +E L+ +F+ +G+IV V ++ D T + RGF F
Sbjct: 101 PRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAF 160
Query: 63 ITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPR 95
I + + VD + + H+I + ++ K+A+ +
Sbjct: 161 IEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAK 193
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 69/85 (81%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE LRK+FIGGL + TTDESL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKV 68
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRD 96
D AM+ RPH +DGRVVE KRAV R+
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSRE 93
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 53/92 (57%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R D + +++K+F+GG+ T + L+ +FEQ+G+I + +M D + + RGF F+
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPR 95
T+ + VD + + H ++G E ++A+ +
Sbjct: 152 TFDDHNSVDKIVIQKYHTVNGHNCEVRKALSK 183
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 125 bits (314), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 69/85 (81%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE LRK+FIGGL + TTDESL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRD 96
D AM+ RPH +DGRVVE KRAV R+
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSRE 93
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 52/90 (57%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R D + +++K+F+GG+ T + L+ +FEQ+G+I + +M D + + RGF F+
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAV 93
T+ + VD + + H ++G E ++A+
Sbjct: 152 TFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 125 bits (314), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 69/85 (81%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE LRK+FIGGL + TTDESL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRD 96
D AM+ RPH +DGRVVE KRAV R+
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSRE 93
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 53/92 (57%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R D + +++K+F+GG+ T + L+ +FEQ+G+I + +M D + + RGF F+
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPR 95
T+ + VD + + H ++G E ++A+ +
Sbjct: 152 TFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 125 bits (314), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 69/85 (81%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE LRK+FIGGL + TTDESL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRD 96
D AM+ RPH +DGRVVE KRAV R+
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSRE 93
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 53/92 (57%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R D + +++K+F+GG+ T + L+ +FEQ+G+I + +M D + + RGF F+
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPR 95
T+ + VD + + H ++G E ++A+ +
Sbjct: 152 TFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 125 bits (314), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 69/85 (81%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE LRK+FIGGL + TTDESL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRD 96
D AM+ RPH +DGRVVE KRAV R+
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSRE 93
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 53/92 (57%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R D + +++K+F+GG+ T + L+ +FEQ+G+I + +M D + + RGF F+
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPR 95
T+ + VD + + H ++G E ++A+ +
Sbjct: 152 TFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus
GN=HNRNPA1 PE=1 SV=2
Length = 320
Score = 125 bits (314), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 69/85 (81%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE LRK+FIGGL + TTDESL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRD 96
D AM+ RPH +DGRVVE KRAV R+
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSRE 93
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 53/92 (57%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R D + +++K+F+GG+ T + L+ +FEQ+G+I + +M D + + RGF F+
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPR 95
T+ + VD + + H ++G E ++A+ +
Sbjct: 152 TFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
>sp|Q02926|RB97D_DROME Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=2
SV=1
Length = 471
Score = 124 bits (312), Expect = 1e-28, Method: Composition-based stats.
Identities = 59/95 (62%), Positives = 73/95 (76%), Gaps = 1/95 (1%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R +D C E E LRK+FIGGL TT+E+L+ F+ QWG++VDVVVM+D TKRSRGFGFI
Sbjct: 20 REEDDIC-ELEHLRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFI 78
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDVR 98
TY+++ MVD A NRPH IDG+ VE KRA+PR R
Sbjct: 79 TYTKSLMVDRAQENRPHIIDGKTVEAKRALPRPER 113
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
S++K+F+GGL +E L+ +F Q+G +V V ++ D T + RGF F+ + + VD A
Sbjct: 121 SVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKA 180
Query: 75 MSNRPHNIDGRVVETKRAV 93
+ + H I V+ K+++
Sbjct: 181 ILKKQHAIKYVHVDVKKSI 199
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/96 (62%), Positives = 73/96 (76%), Gaps = 2/96 (2%)
Query: 3 PRYDDS--KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGF 60
P DD + EPE LRK+FIGGL + TTD+SL+ FEQWG++ D VVM+DP TKRSRGF
Sbjct: 11 PSSDDQGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGF 70
Query: 61 GFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRD 96
GF+TYS + VD +MS RPH +DGRVVE KRAV R+
Sbjct: 71 GFVTYSCVEEVDASMSARPHKVDGRVVEPKRAVSRE 106
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 53/92 (57%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R D ++ +++K+F+GG+ T + L+ +FE +G+I + VM+D + + RGF F+
Sbjct: 105 REDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFV 164
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPR 95
T+ + VD + + H I+ E K+A+ +
Sbjct: 165 TFDDHDTVDKIVVQKYHTINLHNCEVKKALSK 196
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 68/85 (80%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE LRK+FIGGL + TTDESL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRD 96
D AM+ PH +DGRVVE KRAV R+
Sbjct: 69 DAAMNTTPHKVDGRVVEPKRAVSRE 93
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 53/92 (57%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R D + +++K+F+GG+ T + L+ +FEQ+G+I + +M D + + RGF F+
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPR 95
T+ + VD + + H + G E ++A+P+
Sbjct: 152 TFDDHDSVDKIVIQKYHTVKGHNCEVRKALPK 183
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 373
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 69/85 (81%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE LRK+FIGGL + TTD+SL+ FEQWG++ D VVM+DP TKRSRGFGF+TYS + V
Sbjct: 22 EPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 81
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRD 96
D +MS RPH +DGRVVE KRAV R+
Sbjct: 82 DASMSARPHKVDGRVVEPKRAVSRE 106
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 53/92 (57%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R D ++ +++K+F+GG+ T + L+ + E +G+I + VM+D + + RGF F+
Sbjct: 105 REDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFV 164
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPR 95
T+ + VD + + H I+G E K+A+ +
Sbjct: 165 TFDDHDTVDKIVVQKYHTINGHNCEVKKALSK 196
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 358
Score = 122 bits (306), Expect = 6e-28, Method: Composition-based stats.
Identities = 55/85 (64%), Positives = 67/85 (78%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
E E RK+FIGGL + TT+ESL+ F+EQWG++ D VVM+DP +KRSRGFGF+T+S V
Sbjct: 4 EKEQFRKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEV 63
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRD 96
D AMS RPH IDGRVVE KRAV R+
Sbjct: 64 DAAMSARPHTIDGRVVEPKRAVARE 88
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 55/92 (59%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R + +K +++K+F+GG+ T + L+ +FE++G+I ++ D + + RGFGF+
Sbjct: 87 REESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFV 146
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPR 95
T+++ VD + + H I+G E ++A+ +
Sbjct: 147 TFNDHDPVDKIVLQKYHTINGHNAEVRKALSK 178
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 66/86 (76%)
Query: 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKM 70
EPE LRK+FIGGL + TTDESL+ FEQWG + D VVM+DP +KRSRGFGF+TY
Sbjct: 8 NEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDE 67
Query: 71 VDDAMSNRPHNIDGRVVETKRAVPRD 96
VD AM+ RPH +DGRVVE KRAV R+
Sbjct: 68 VDAAMTARPHKVDGRVVEPKRAVSRE 93
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 54/92 (58%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R D S+ +++K+F+GG+ T ++ L+ +FEQ+G+I + +M D + + RGF F+
Sbjct: 92 REDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPR 95
T+ + VD + + H ++ + ++A+ +
Sbjct: 152 TFEDHDSVDKIVIQKYHTVNNHNSQVRKALSK 183
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 67/85 (78%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE LRK+FIGGL + TTD+SL+ FE+WG + D VVM+DP TKRSRGFGF+TYS + V
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRD 96
D AM RPH +DGRVVE KRAV R+
Sbjct: 90 DAAMCARPHKVDGRVVEPKRAVSRE 114
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 52/81 (64%)
Query: 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
+++K+F+GG+ T + +L+ +FE++G+I + VM+D + + RGF F+T+ + VD
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Query: 75 MSNRPHNIDGRVVETKRAVPR 95
+ + H I+G E K+A+ +
Sbjct: 184 VVQKYHTINGHNCEVKKALSK 204
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 67/85 (78%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE LRK+FIGGL + TTD+SL+ FE+WG + D VVM+DP TKRSRGFGF+TYS + V
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRD 96
D AM RPH +DGRVVE KRAV R+
Sbjct: 90 DAAMCARPHKVDGRVVEPKRAVSRE 114
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 52/81 (64%)
Query: 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
+++K+F+GG+ T + +L+ +FE++G+I + VM+D + + RGF F+T+ + VD
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Query: 75 MSNRPHNIDGRVVETKRAVPR 95
+ + H I+G E K+A+ +
Sbjct: 184 VVQKYHTINGHNCEVKKALSK 204
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 67/85 (78%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE LRK+FIGGL + TTD+SL+ FE+WG + D VVM+DP TKRSRGFGF+TYS + V
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRD 96
D AM RPH +DGRVVE KRAV R+
Sbjct: 90 DAAMCARPHKVDGRVVEPKRAVSRE 114
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 52/81 (64%)
Query: 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
+++K+F+GG+ T + +L+ +FE++G+I + VM+D + + RGF F+T+ + VD
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Query: 75 MSNRPHNIDGRVVETKRAVPR 95
+ + H I+G E K+A+ +
Sbjct: 184 VVQKYHTINGHNCEVKKALSK 204
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 70/90 (77%)
Query: 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYS 66
+ K E E RK+FIGGL + TT+ESL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S
Sbjct: 11 ERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFS 70
Query: 67 EAKMVDDAMSNRPHNIDGRVVETKRAVPRD 96
VD AM+ RPH+IDGRVVE KRAV R+
Sbjct: 71 SMAEVDAAMAARPHSIDGRVVEPKRAVARE 100
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 51/81 (62%)
Query: 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
+++K+F+GG+ T + L+ +FE++G+I + ++ D + + RGFGF+T+ + VD
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 75 MSNRPHNIDGRVVETKRAVPR 95
+ + H I+G E ++A+ R
Sbjct: 170 VLQKHHTINGHNAEVRKALSR 190
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus
GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 70/90 (77%)
Query: 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYS 66
+ K E E RK+FIGGL + TT+ESL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S
Sbjct: 11 ERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFS 70
Query: 67 EAKMVDDAMSNRPHNIDGRVVETKRAVPRD 96
VD AM+ RPH+IDGRVVE KRAV R+
Sbjct: 71 SMAEVDAAMAARPHSIDGRVVEPKRAVARE 100
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 50/81 (61%)
Query: 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
+++K+F+GG+ T + L+ +FE++G+I + ++ D + + RGFGF+T+ + VD
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 75 MSNRPHNIDGRVVETKRAVPR 95
+ H I+G E ++A+ R
Sbjct: 170 FLQKYHTINGHNAEVRKALSR 190
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 70/90 (77%)
Query: 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYS 66
+ K E E RK+FIGGL + TT+ESL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S
Sbjct: 11 ERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFS 70
Query: 67 EAKMVDDAMSNRPHNIDGRVVETKRAVPRD 96
VD AM+ RPH+IDGRVVE KRAV R+
Sbjct: 71 SMAEVDAAMAARPHSIDGRVVEPKRAVARE 100
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 51/81 (62%)
Query: 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
+++K+F+GG+ T + L+ +FE++G+I + ++ D + + RGFGF+T+ + VD
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 75 MSNRPHNIDGRVVETKRAVPR 95
+ + H I+G E ++A+ R
Sbjct: 170 VLQKYHTINGHNAEVRKALSR 190
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 70/90 (77%)
Query: 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYS 66
+ K E E RK+FIGGL + TT+ESL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S
Sbjct: 11 ERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFS 70
Query: 67 EAKMVDDAMSNRPHNIDGRVVETKRAVPRD 96
VD AM+ RPH+IDGRVVE KRAV R+
Sbjct: 71 SMAEVDAAMAARPHSIDGRVVEPKRAVARE 100
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 51/81 (62%)
Query: 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
+++K+F+GG+ T + L+ +FE++G+I + ++ D + + RGFGF+T+ + VD
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 75 MSNRPHNIDGRVVETKRAVPR 95
+ + H I+G E ++A+ R
Sbjct: 170 VLQKYHTINGHNAEVRKALSR 190
>sp|Q9TTV2|ROA2_SAGOE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus
oedipus GN=HNRNPA2B1 PE=1 SV=1
Length = 341
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 69/85 (81%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
E E RK+FIGGL ++TT+ESL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S V
Sbjct: 4 EKEQFRKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 63
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRD 96
D AM+ RPH+IDGRVVE KRAV R+
Sbjct: 64 DAAMAARPHSIDGRVVEPKRAVARE 88
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 53/92 (57%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R + K +++K+F+GG+ T + L+ +F ++G+I + ++ D + + RGFGF+
Sbjct: 87 REESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFV 146
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPR 95
T+ + VD + + H I+G E ++A+ R
Sbjct: 147 TFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 178
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 68/85 (80%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
E E RK+FIGGL + TT+ESL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S V
Sbjct: 4 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 63
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRD 96
D AM+ RPH+IDGRVVE KRAV R+
Sbjct: 64 DAAMAARPHSIDGRVVEPKRAVARE 88
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 51/81 (62%)
Query: 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
+++K+F+GG+ T + L+ +FE++G+I + ++ D + + RGFGF+T+ + VD
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 157
Query: 75 MSNRPHNIDGRVVETKRAVPR 95
+ + H I+G E ++A+ R
Sbjct: 158 VLQKYHTINGHNAEVRKALSR 178
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 346
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 66/85 (77%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
E E RK+FIGGL + TT+ESL+ ++EQWG + D VVM+DP +KRSRGFGF+T+S V
Sbjct: 4 EKEQFRKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEV 63
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRD 96
D AM+ RPH IDGRVVE KRAV R+
Sbjct: 64 DAAMATRPHTIDGRVVEPKRAVARE 88
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 54/92 (58%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R + +K +++K+F+GG+ T + L+ +FE++G+I + ++ D + + RGF F+
Sbjct: 87 REESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFV 146
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPR 95
T+ + VD + + H I+G E ++A+ +
Sbjct: 147 TFDDHDPVDKIVLQKYHTINGHNAEVRKALSK 178
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 67/85 (78%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE+LRK+F+GGL TTD+ ++ F+ Q+GEI D++VM+DP TKRSRGFGF+T+S V
Sbjct: 18 EPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEV 77
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRD 96
D AM RPH IDG+ V+ KRAVPRD
Sbjct: 78 DAAMKQRPHIIDGKTVDPKRAVPRD 102
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 52/94 (55%)
Query: 3 PRYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGF 62
PR D ++ S +++++ G+ T++ L +F ++G + ++ D T++ RGFGF
Sbjct: 100 PRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGF 159
Query: 63 ITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRD 96
+T+ + VD + + H ++G + ++ + +D
Sbjct: 160 VTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKD 193
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 100 bits (249), Expect = 2e-21, Method: Composition-based stats.
Identities = 45/98 (45%), Positives = 73/98 (74%), Gaps = 3/98 (3%)
Query: 1 MKPRYDDSKCTEPESLR--KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSR 58
M+ D+++ T P + K+FIGGL++ TTD+SL+ +FEQ+GE++D VM+D T RSR
Sbjct: 145 MESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSR 204
Query: 59 GFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRD 96
GFGF+T+ K V++ MS + H++DG++++ KRA+PR+
Sbjct: 205 GFGFLTFKNPKCVNEVMS-KEHHLDGKIIDPKRAIPRE 241
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 48/84 (57%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
E E K+F+GG+ T+E + FF Q+G ++D +M D T R RGFGF+TY V
Sbjct: 242 EQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAV 301
Query: 72 DDAMSNRPHNIDGRVVETKRAVPR 95
+ MS I G+ VE KRA P+
Sbjct: 302 EATMSQPYITIHGKPVEVKRATPK 325
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 95.1 bits (235), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 61/85 (71%)
Query: 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73
+ + K+F+GGLD+ TT E+L+++F Q+GE+VD V+MKD T +SRGFGF+ + + V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 74 AMSNRPHNIDGRVVETKRAVPRDVR 98
+++RPH +DGR ++ K PR ++
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQ 91
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/96 (38%), Positives = 61/96 (63%), Gaps = 6/96 (6%)
Query: 3 PRYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGF 62
PR D+SK K+F+GG+ + + L+ +F+++G + +VV++ D +R RGFGF
Sbjct: 105 PRSDNSKSN------KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158
Query: 63 ITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDVR 98
IT+ + + VD A++ H+I G+ VE KRA PRD +
Sbjct: 159 ITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSK 194
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 94.7 bits (234), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 61/85 (71%)
Query: 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73
+ + K+F+GGLD+ TT E+L+++F Q+GE+VD V+MKD T +SRGFGF+ + + V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 74 AMSNRPHNIDGRVVETKRAVPRDVR 98
+++RPH +DGR ++ K PR ++
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQ 91
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/96 (38%), Positives = 60/96 (62%), Gaps = 6/96 (6%)
Query: 3 PRYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGF 62
PR D SK K+F+GG+ + + L+ +F+++G + +VV++ D +R RGFGF
Sbjct: 105 PRSDSSKSN------KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158
Query: 63 ITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDVR 98
IT+ + + VD A++ H+I G+ VE KRA PRD +
Sbjct: 159 ITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSK 194
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 61/85 (71%)
Query: 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73
+ + K+F+GGLD+ TT E+L+++F Q+GE+VD V+MKD T +SRGFGF+ + + V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 74 AMSNRPHNIDGRVVETKRAVPRDVR 98
+++RPH +DGR ++ K PR ++
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQ 91
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 61/97 (62%), Gaps = 6/97 (6%)
Query: 2 KPRYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFG 61
+PR ++S+ K+F+GG+ + + L+ +F ++G + +VV++ D +R RGFG
Sbjct: 105 EPRTENSRSN------KIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFG 158
Query: 62 FITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDVR 98
FIT+ + + VD A++ H+I G+ VE KRA PRD +
Sbjct: 159 FITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSK 195
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 90.1 bits (222), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/83 (46%), Positives = 59/83 (71%)
Query: 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVD 72
P K+FIGGL ++T+ ESL+ +F ++G+I + +VMKDP T+RSRGFGF+T+S+ VD
Sbjct: 25 PNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVD 84
Query: 73 DAMSNRPHNIDGRVVETKRAVPR 95
++ H +DG+ V+ K A PR
Sbjct: 85 KVLTQGTHELDGKKVDPKVAFPR 107
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 35/83 (42%), Positives = 54/83 (65%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
+K+F+GGL TT E ++++FEQ+G I D ++M D T R RGFGF+T+ +VD
Sbjct: 118 KKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCE 177
Query: 77 NRPHNIDGRVVETKRAVPRDVRL 99
H I+ ++VE K+A P++V L
Sbjct: 178 IHFHEINNKMVECKKAQPKEVML 200
>sp|Q9CX86|ROA0_MOUSE Heterogeneous nuclear ribonucleoprotein A0 OS=Mus musculus
GN=Hnrnpa0 PE=1 SV=1
Length = 305
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 57/85 (67%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
E L K+FIGGL+ +T++ L+ FE +G + D VV+ +P TKRSR FGF+TYS +
Sbjct: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRD 96
D AM+ PH +DG VE KRAV R+
Sbjct: 62 DAAMAASPHAVDGNTVELKRAVSRE 86
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R D ++ ++K+F+GGL + L F Q+G + ++ D + + RGFGF+
Sbjct: 85 REDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFV 144
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRD 96
+ D A + H I G VE K+AVP++
Sbjct: 145 YFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKE 177
>sp|Q13151|ROA0_HUMAN Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens
GN=HNRNPA0 PE=1 SV=1
Length = 305
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 57/85 (67%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
E L K+FIGGL+ +T++ L+ FE +G + D VV+ +P TKRSR FGF+TYS +
Sbjct: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRD 96
D AM+ PH +DG VE KRAV R+
Sbjct: 62 DAAMAASPHAVDGNTVELKRAVSRE 86
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R D ++ ++K+F+GGL + L F Q+G + ++ D + + RGFGF+
Sbjct: 85 REDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFV 144
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRD 96
+ D A + H I G VE K+AVP++
Sbjct: 145 YFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKE 177
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 88.2 bits (217), Expect = 1e-17, Method: Composition-based stats.
Identities = 36/79 (45%), Positives = 61/79 (77%), Gaps = 1/79 (1%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
K+FIGGL++ TT+++L+ +F ++G + D+ +MKDP T RSRGFGF+++ + VD+ +
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219
Query: 78 RPHNIDGRVVETKRAVPRD 96
+ H +DG+V++ KRA+PRD
Sbjct: 220 Q-HILDGKVIDPKRAIPRD 237
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 34/87 (39%), Positives = 49/87 (56%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
E + K+F+GG+ + + FF QWG I+D +M D T +SRGFGF+TY A V
Sbjct: 238 EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAV 297
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDVR 98
D N+ + R +E KRA PR ++
Sbjct: 298 DRVCQNKFIDFKDRKIEIKRAEPRHMQ 324
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 87.8 bits (216), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/90 (42%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Query: 3 PRYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGF 62
PR+ ++ + E K+FIGGL + TT + L+ +F ++GE+VD + DPIT RSRGFGF
Sbjct: 84 PRHSEAATAQREEW-KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGF 142
Query: 63 ITYSEAKMVDDAMSNRPHNIDGRVVETKRA 92
+ + E++ VD M + H ++G+V++ KRA
Sbjct: 143 VLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 47/83 (56%)
Query: 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73
E ++K+F+GGL T +E ++ +F +GE+ + + D T + RGF FIT+ E + V
Sbjct: 179 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
Query: 74 AMSNRPHNIDGRVVETKRAVPRD 96
M + HN+ E K A+ ++
Sbjct: 239 IMEKKYHNVGLSKCEIKVAMSKE 261
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 87.8 bits (216), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/90 (42%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Query: 3 PRYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGF 62
PR+ ++ + E K+FIGGL + TT + L+ +F ++GE+VD + DPIT RSRGFGF
Sbjct: 84 PRHTEAAAAQREEW-KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGF 142
Query: 63 ITYSEAKMVDDAMSNRPHNIDGRVVETKRA 92
+ + E++ VD M + H ++G+V++ KRA
Sbjct: 143 VLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 47/83 (56%)
Query: 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73
E ++K+F+GGL T +E ++ +F +GE+ + + D T + RGF FIT+ E + V
Sbjct: 179 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
Query: 74 AMSNRPHNIDGRVVETKRAVPRD 96
M + HN+ E K A+ ++
Sbjct: 239 IMEKKYHNVGLSKCEIKVAMSKE 261
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 60/90 (66%)
Query: 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVD 72
P K+FIGGL ++TT E L+ +F Q+GE+ + +VM+DP+TKRSRGFGF+T+ + VD
Sbjct: 16 PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 75
Query: 73 DAMSNRPHNIDGRVVETKRAVPRDVRLYLV 102
++ H +D + ++ K A PR + +V
Sbjct: 76 KVLAQSRHELDSKTIDPKVAFPRRAQPKMV 105
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 53/81 (65%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
+K+F+GGL TT E ++ +FEQ+G++ D ++M D T R RGFGF+T+ +V+
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 77 NRPHNIDGRVVETKRAVPRDV 97
H I+ ++VE K+A P++V
Sbjct: 169 IHFHEINNKMVECKKAQPKEV 189
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 60/90 (66%)
Query: 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVD 72
P K+FIGGL ++TT E L+ +F Q+GE+ + +VM+DP+TKRSRGFGF+T+ + VD
Sbjct: 16 PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 75
Query: 73 DAMSNRPHNIDGRVVETKRAVPRDVRLYLV 102
++ H +D + ++ K A PR + +V
Sbjct: 76 KVLAQSRHELDSKTIDPKVAFPRRAQPKMV 105
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 53/81 (65%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
+K+F+GGL TT E ++ +FEQ+G++ D ++M D T R RGFGF+T+ +V+
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 77 NRPHNIDGRVVETKRAVPRDV 97
H I+ ++VE K+A P++V
Sbjct: 169 IHFHEINNKMVECKKAQPKEV 189
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 60/90 (66%)
Query: 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVD 72
P K+FIGGL ++TT E L+ +F Q+GE+ + +VM+DP+TKRSRGFGF+T+ + VD
Sbjct: 16 PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 75
Query: 73 DAMSNRPHNIDGRVVETKRAVPRDVRLYLV 102
++ H +D + ++ K A PR + +V
Sbjct: 76 KVLAQSRHELDSKTIDPKVAFPRRAQPKMV 105
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 53/81 (65%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
+K+F+GGL TT E ++ +FEQ+G++ D ++M D T R RGFGF+T+ +V+
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 77 NRPHNIDGRVVETKRAVPRDV 97
H I+ ++VE K+A P++V
Sbjct: 169 IHFHEINNKMVECKKAQPKEV 189
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 85.5 bits (210), Expect = 8e-17, Method: Composition-based stats.
Identities = 36/85 (42%), Positives = 59/85 (69%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
K+FIGGL ++T+ +SL+ +F ++GEI + +VM+DP TKRSRGFGF+T+++ VD +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 78 RPHNIDGRVVETKRAVPRDVRLYLV 102
H +D + ++ K A PR + +V
Sbjct: 82 PHHELDSKTIDPKVAFPRRAQPKMV 106
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 52/81 (64%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
+K+F+GGL T E ++ +FEQ+G++ D ++M D T R RGFGF+T+ +V+
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 77 NRPHNIDGRVVETKRAVPRDV 97
H I+ ++VE K+A P++V
Sbjct: 170 IHFHEINNKMVECKKAQPKEV 190
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 85.5 bits (210), Expect = 8e-17, Method: Composition-based stats.
Identities = 37/90 (41%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Query: 3 PRYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGF 62
PR+ ++ + E K+FIGGL + TT + L+ +F ++G++VD + DPIT RSRGFGF
Sbjct: 82 PRHTEAATAQREEW-KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGF 140
Query: 63 ITYSEAKMVDDAMSNRPHNIDGRVVETKRA 92
+ + E++ VD M + H ++G+V++ KRA
Sbjct: 141 VLFKESESVDKVMDQKEHKLNGKVIDPKRA 170
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 47/83 (56%)
Query: 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73
E ++K+F+GGL T +E ++ +F +GE+ + + D T + RGF FIT+ E + V
Sbjct: 177 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 236
Query: 74 AMSNRPHNIDGRVVETKRAVPRD 96
M + HN+ E K A+ ++
Sbjct: 237 IMEKKYHNVGLSKCEIKVAMSKE 259
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 85.1 bits (209), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 59/87 (67%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
E + K+F+GGL + TT E+L +F ++G+I+D VVMK+ + RSRGFGF+T+++ V
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDVR 98
+ + N PH +DGR ++ K PR ++
Sbjct: 62 NHVLQNGPHTLDGRTIDPKPCNPRTLQ 88
Score = 79.3 bits (194), Expect = 7e-15, Method: Composition-based stats.
Identities = 39/101 (38%), Positives = 60/101 (59%), Gaps = 8/101 (7%)
Query: 4 RYDDSKCTEPESLRK--------VFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITK 55
R D K P +L+K VF+GGL T+ L+ FF ++G++ +VV+M D K
Sbjct: 75 RTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKK 134
Query: 56 RSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRD 96
+SRGFGF+++ E V+ + R N++G+ VE K+A PRD
Sbjct: 135 KSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPRD 175
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 59/85 (69%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
K+FIGGL ++T+ +SL+ +F ++GEI + +VM+DP TKRSRGFGF+T+++ VD +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 78 RPHNIDGRVVETKRAVPRDVRLYLV 102
H +D + ++ K A PR + +V
Sbjct: 82 PHHELDSKTIDPKVAFPRRAQPKMV 106
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 52/81 (64%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
+K+F+GGL T E ++ +FEQ+G++ D ++M D T R RGFGF+T+ +V+
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 77 NRPHNIDGRVVETKRAVPRDV 97
H I+ ++VE K+A P++V
Sbjct: 170 IHFHEINNKMVECKKAQPKEV 190
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 80.5 bits (197), Expect = 3e-15, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 50/80 (62%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
+K+F+GGL TDE + +FE +G + DV +M D T R RGFGF+++ VD +
Sbjct: 110 KKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLH 169
Query: 77 NRPHNIDGRVVETKRAVPRD 96
H++ G+ VE KRA+P+D
Sbjct: 170 KTFHDLSGKQVEVKRALPKD 189
Score = 73.2 bits (178), Expect = 5e-13, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
K+F+GG+ + T ++ L+ F +GE+ +VM+D +T R RGFGF+ +S+ ++D +
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 78 RPHNIDGRVVETKRAVPRD 96
+ H+ID R V+ KRA+ R+
Sbjct: 67 K-HSIDTREVDVKRAMSRE 84
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 79.0 bits (193), Expect = 8e-15, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 51/75 (68%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
K+FIGGL + T+ + L + ++GE+VD + DP+T RSRGFGF+ + +A VD +
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 78 RPHNIDGRVVETKRA 92
+ H +DG++++ KRA
Sbjct: 209 KEHKLDGKLIDPKRA 223
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 49/84 (58%)
Query: 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73
E +KVF+GGL T++E ++ +F +GEI ++ + D T RGF FITY++ + V
Sbjct: 230 EPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 289
Query: 74 AMSNRPHNIDGRVVETKRAVPRDV 97
+ +R H I E K A P++V
Sbjct: 290 LLESRYHQIGSGKCEIKVAQPKEV 313
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 53/80 (66%)
Query: 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVD 72
P S K+FIGGL + T+ + L + ++GE+VD + DP+T RSRGFGF+ + +A VD
Sbjct: 47 PTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 106
Query: 73 DAMSNRPHNIDGRVVETKRA 92
+ + H +DG++++ KRA
Sbjct: 107 KVLELKEHKLDGKLIDPKRA 126
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%)
Query: 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73
E +KVF+GGL T++E ++ +F +GEI ++ + D T RGF FITY++ + V
Sbjct: 133 EPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 192
Query: 74 AMSNRPHNIDGRVVETKRAVPRDV 97
+ +R H I E K A P++V
Sbjct: 193 LLESRYHQIGSGKCEIKVAQPKEV 216
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 54/80 (67%)
Query: 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73
E K+F+GGL + T+ + L+ +F ++GE+VD + DP T RSRGFGFI + +A V+
Sbjct: 66 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 125
Query: 74 AMSNRPHNIDGRVVETKRAV 93
+ + H +DGRV++ K+A+
Sbjct: 126 VLDQKEHRLDGRVIDPKKAM 145
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 16 LRKVFIGGLDYRT-TDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
++K+F+GGL+ + T+E ++ +F ++GEI + + DP + RGF FIT+ E + V
Sbjct: 152 VKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKV 211
Query: 75 MSNRPHNIDGRVVETKRAVPRDV 97
+ + H + G E K A P++V
Sbjct: 212 LEKKFHTVSGSKCEIKVAQPKEV 234
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 54/80 (67%)
Query: 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73
E K+F+GGL + T+ + L+ +F ++GE+VD + DP T RSRGFGFI + ++ V+
Sbjct: 72 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEK 131
Query: 74 AMSNRPHNIDGRVVETKRAV 93
+ + H +DGRV++ K+A+
Sbjct: 132 VLDQKEHRLDGRVIDPKKAM 151
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%)
Query: 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAM 75
++K+F+GGL+ T+E ++ +F Q+GEI + + DP + RGF FIT+ E V +
Sbjct: 158 VKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVL 217
Query: 76 SNRPHNIDGRVVETKRAVPRDV 97
+ H + G E K A P++V
Sbjct: 218 EKKFHTVSGSKCEIKVAQPKEV 239
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 51/75 (68%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
K+FIGGL + T+ + L + ++GE++D + DP+T RSRGFGF+ + +A VD +
Sbjct: 35 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 94
Query: 78 RPHNIDGRVVETKRA 92
+ H +DG++++ KRA
Sbjct: 95 KEHKLDGKLIDPKRA 109
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%)
Query: 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73
E +KVF+GGL TT+E ++ +F +GEI ++ + D T RGF F+TY++ + V
Sbjct: 116 EPPKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQK 175
Query: 74 AMSNRPHNIDGRVVETKRAVPRDV 97
+ +R H I E K A P++V
Sbjct: 176 LLESRFHQIGTGKCEIKAAQPKEV 199
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 51/75 (68%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
K+FIGGL + T+ + L + ++GE+VD + DP+T RSRGFGF+ + +A VD +
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 78 RPHNIDGRVVETKRA 92
+ H +DG++++ KRA
Sbjct: 90 KEHKLDGKLIDPKRA 104
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%)
Query: 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73
E +KVF+GGL T++E ++ +F +GEI ++ + D T RGF FITY++ + V
Sbjct: 111 EPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 170
Query: 74 AMSNRPHNIDGRVVETKRAVPRDV 97
+ +R H I E K A P++V
Sbjct: 171 LLESRYHQIGSGKCEIKVAQPKEV 194
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,625,289
Number of Sequences: 539616
Number of extensions: 1435610
Number of successful extensions: 5748
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 145
Number of HSP's that attempted gapping in prelim test: 4612
Number of HSP's gapped (non-prelim): 1175
length of query: 115
length of database: 191,569,459
effective HSP length: 83
effective length of query: 32
effective length of database: 146,781,331
effective search space: 4697002592
effective search space used: 4697002592
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)