Query psy13066
Match_columns 115
No_of_seqs 113 out of 1346
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 18:34:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13066.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13066hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 3.6E-20 7.8E-25 114.5 12.0 88 13-100 31-119 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 4.7E-19 1E-23 123.2 12.6 83 15-97 268-351 (352)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 3E-18 6.6E-23 119.1 11.2 83 15-97 2-85 (352)
4 TIGR01659 sex-lethal sex-letha 99.8 1E-17 2.2E-22 116.4 11.8 86 11-96 102-188 (346)
5 KOG0113|consensus 99.8 2.1E-17 4.5E-22 110.2 11.0 92 9-100 94-186 (335)
6 KOG0121|consensus 99.8 5.3E-18 1.2E-22 100.7 7.1 81 14-94 34-115 (153)
7 KOG0149|consensus 99.7 7.9E-18 1.7E-22 108.9 7.9 81 12-92 8-88 (247)
8 PF00076 RRM_1: RNA recognitio 99.7 3.1E-17 6.8E-22 89.3 8.7 69 19-88 1-70 (70)
9 KOG0122|consensus 99.7 3.6E-17 7.9E-22 106.4 10.1 83 14-96 187-270 (270)
10 KOG0125|consensus 99.7 7.1E-17 1.5E-21 108.8 9.4 93 6-100 86-179 (376)
11 TIGR01645 half-pint poly-U bin 99.7 2.9E-16 6.2E-21 115.0 11.6 82 15-96 203-285 (612)
12 PF14259 RRM_6: RNA recognitio 99.7 3E-16 6.6E-21 85.7 8.9 69 19-88 1-70 (70)
13 TIGR01645 half-pint poly-U bin 99.7 4.8E-16 1E-20 113.9 11.4 79 15-93 106-185 (612)
14 TIGR01659 sex-lethal sex-letha 99.7 7.1E-16 1.5E-20 107.2 11.3 85 13-97 190-277 (346)
15 KOG0145|consensus 99.7 4.8E-16 1E-20 102.4 9.2 89 12-100 37-126 (360)
16 PLN03120 nucleic acid binding 99.7 9.4E-16 2E-20 101.7 10.6 77 16-95 4-80 (260)
17 TIGR01622 SF-CC1 splicing fact 99.7 1.6E-15 3.4E-20 108.8 12.6 83 13-95 86-168 (457)
18 KOG0126|consensus 99.6 3.5E-17 7.6E-22 102.5 1.4 78 15-92 34-112 (219)
19 TIGR01628 PABP-1234 polyadenyl 99.6 2.2E-15 4.7E-20 110.7 10.9 77 18-94 2-79 (562)
20 TIGR01642 U2AF_lg U2 snRNP aux 99.6 6.5E-15 1.4E-19 106.9 12.7 81 14-94 293-374 (509)
21 TIGR01622 SF-CC1 splicing fact 99.6 5.7E-15 1.2E-19 106.0 11.2 78 16-93 186-264 (457)
22 KOG0144|consensus 99.6 1.6E-15 3.5E-20 105.5 7.8 86 13-98 31-120 (510)
23 KOG0130|consensus 99.6 1.7E-15 3.7E-20 90.9 6.7 87 10-96 66-153 (170)
24 TIGR01628 PABP-1234 polyadenyl 99.6 5E-15 1.1E-19 108.8 10.6 84 14-98 283-367 (562)
25 KOG0108|consensus 99.6 4.4E-15 9.6E-20 105.2 9.1 84 17-100 19-103 (435)
26 PLN03121 nucleic acid binding 99.6 2E-14 4.3E-19 94.2 11.2 76 15-93 4-79 (243)
27 smart00362 RRM_2 RNA recogniti 99.6 1.8E-14 4E-19 77.9 9.4 71 18-90 1-72 (72)
28 TIGR01648 hnRNP-R-Q heterogene 99.6 1.2E-14 2.7E-19 106.2 10.3 80 13-93 55-136 (578)
29 PLN03213 repressor of silencin 99.6 1.1E-14 2.4E-19 103.2 9.8 79 13-95 7-88 (759)
30 KOG4207|consensus 99.6 4.8E-15 1E-19 94.7 7.0 83 11-93 8-91 (256)
31 KOG0107|consensus 99.6 1.1E-14 2.4E-19 90.8 8.4 78 15-97 9-87 (195)
32 smart00360 RRM RNA recognition 99.6 3.3E-14 7.1E-19 76.6 8.7 69 21-89 1-70 (71)
33 KOG0148|consensus 99.6 1.1E-14 2.3E-19 96.3 7.8 82 16-97 62-144 (321)
34 KOG0111|consensus 99.6 3.1E-15 6.8E-20 96.5 4.8 86 14-99 8-94 (298)
35 KOG0117|consensus 99.6 2.6E-14 5.7E-19 99.8 9.7 82 14-95 81-164 (506)
36 KOG0105|consensus 99.6 1.9E-14 4E-19 90.7 7.7 99 14-115 4-130 (241)
37 COG0724 RNA-binding proteins ( 99.6 5.6E-14 1.2E-18 93.3 10.3 79 16-94 115-194 (306)
38 KOG0148|consensus 99.5 4E-14 8.7E-19 93.6 8.6 87 5-97 153-240 (321)
39 KOG0127|consensus 99.5 7.9E-14 1.7E-18 99.6 9.5 83 16-99 117-200 (678)
40 cd00590 RRM RRM (RNA recogniti 99.5 3.1E-13 6.6E-18 73.3 10.0 73 18-91 1-74 (74)
41 TIGR01648 hnRNP-R-Q heterogene 99.5 2.5E-13 5.4E-18 99.5 11.0 76 15-98 232-310 (578)
42 KOG0131|consensus 99.5 4.3E-14 9.2E-19 88.7 5.9 80 14-93 7-87 (203)
43 KOG0127|consensus 99.5 1.6E-13 3.4E-18 98.1 9.4 85 14-98 290-381 (678)
44 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 3E-13 6.6E-18 97.9 10.6 76 15-96 1-79 (481)
45 KOG4205|consensus 99.5 1.1E-13 2.4E-18 94.5 7.0 99 15-113 5-103 (311)
46 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 8.8E-13 1.9E-17 95.5 11.5 77 14-95 273-351 (481)
47 KOG0114|consensus 99.5 1.2E-12 2.6E-17 75.4 9.3 84 11-97 13-97 (124)
48 KOG0117|consensus 99.5 2.7E-13 6E-18 94.8 7.6 78 15-100 258-336 (506)
49 KOG0144|consensus 99.4 3.9E-13 8.5E-18 93.8 5.8 84 15-99 123-210 (510)
50 KOG0415|consensus 99.4 7.1E-13 1.5E-17 90.8 6.7 84 14-97 237-321 (479)
51 KOG0132|consensus 99.4 1.6E-12 3.4E-17 96.1 8.1 93 16-114 421-516 (894)
52 smart00361 RRM_1 RNA recogniti 99.4 5.2E-12 1.1E-16 69.1 8.0 60 30-89 2-69 (70)
53 KOG0153|consensus 99.4 3.7E-12 8E-17 86.8 8.3 81 8-94 220-302 (377)
54 KOG0147|consensus 99.4 1.1E-12 2.3E-17 93.7 5.8 76 19-94 281-357 (549)
55 KOG0124|consensus 99.4 5.5E-13 1.2E-17 91.8 4.2 76 17-92 114-190 (544)
56 KOG4208|consensus 99.4 7.5E-12 1.6E-16 80.0 8.5 85 11-95 44-130 (214)
57 PF13893 RRM_5: RNA recognitio 99.3 1.7E-11 3.6E-16 64.1 7.8 55 33-92 1-56 (56)
58 KOG0145|consensus 99.3 4.8E-11 1E-15 79.1 10.1 83 13-95 275-358 (360)
59 KOG4205|consensus 99.3 1.1E-11 2.3E-16 84.9 7.3 86 15-100 96-181 (311)
60 TIGR01642 U2AF_lg U2 snRNP aux 99.3 2.5E-11 5.5E-16 88.2 9.5 75 12-92 171-257 (509)
61 KOG0123|consensus 99.3 2.1E-11 4.5E-16 85.6 8.2 83 19-104 79-162 (369)
62 KOG4212|consensus 99.3 3.6E-11 7.9E-16 84.5 9.0 79 15-94 43-123 (608)
63 KOG0131|consensus 99.3 1.4E-11 3.1E-16 77.5 5.6 85 15-99 95-181 (203)
64 KOG0124|consensus 99.3 2.6E-11 5.5E-16 83.7 7.3 80 15-94 209-289 (544)
65 KOG0109|consensus 99.2 8.7E-11 1.9E-15 78.7 6.5 72 17-96 3-75 (346)
66 KOG0146|consensus 99.2 5.4E-11 1.2E-15 79.1 5.3 89 10-98 279-368 (371)
67 KOG0146|consensus 99.2 1.2E-10 2.7E-15 77.4 6.5 85 13-98 16-104 (371)
68 KOG0533|consensus 99.1 1.1E-09 2.5E-14 72.6 8.8 87 12-99 79-166 (243)
69 KOG4211|consensus 99.1 9.3E-10 2E-14 78.1 8.7 83 12-97 6-88 (510)
70 KOG0226|consensus 99.1 1.7E-10 3.7E-15 76.0 4.5 93 4-96 178-271 (290)
71 KOG4206|consensus 99.1 1.2E-09 2.5E-14 70.9 8.1 79 16-97 9-92 (221)
72 KOG0123|consensus 99.0 1.5E-09 3.3E-14 76.3 7.9 73 18-96 3-76 (369)
73 KOG0116|consensus 99.0 2.9E-09 6.4E-14 75.6 8.9 81 16-96 288-368 (419)
74 KOG0110|consensus 99.0 2.4E-09 5.3E-14 78.8 8.0 77 17-93 516-596 (725)
75 KOG4661|consensus 99.0 2.8E-09 6E-14 77.4 8.1 82 14-95 403-485 (940)
76 KOG0109|consensus 99.0 2E-09 4.4E-14 72.3 5.9 76 13-96 75-151 (346)
77 KOG0110|consensus 99.0 1E-09 2.3E-14 80.7 4.8 82 16-97 613-695 (725)
78 PF04059 RRM_2: RNA recognitio 98.9 1.8E-08 3.9E-13 58.2 8.8 80 16-95 1-87 (97)
79 KOG4209|consensus 98.9 3.3E-09 7.2E-14 70.2 5.8 83 11-93 96-178 (231)
80 KOG1548|consensus 98.9 2.1E-08 4.6E-13 68.8 9.5 80 13-93 131-219 (382)
81 KOG4660|consensus 98.9 2.5E-09 5.4E-14 76.9 4.8 76 8-88 67-143 (549)
82 KOG4211|consensus 98.8 2.1E-08 4.5E-13 71.4 8.0 79 14-93 101-180 (510)
83 KOG4212|consensus 98.8 1.2E-08 2.7E-13 72.0 6.7 75 13-92 533-608 (608)
84 KOG0151|consensus 98.8 3.7E-08 8.1E-13 73.0 7.4 82 13-94 171-256 (877)
85 KOG1457|consensus 98.7 2.7E-07 5.8E-12 60.3 9.5 85 11-95 29-118 (284)
86 KOG4454|consensus 98.7 9.9E-09 2.2E-13 66.6 2.0 79 13-93 6-85 (267)
87 KOG0147|consensus 98.6 1.9E-08 4.2E-13 72.3 2.3 83 12-94 175-257 (549)
88 KOG0106|consensus 98.6 9.3E-08 2E-12 62.4 4.6 69 18-94 3-72 (216)
89 KOG0120|consensus 98.5 1.8E-07 3.8E-12 67.7 5.7 90 12-101 285-375 (500)
90 KOG1995|consensus 98.3 1.9E-06 4.1E-11 59.5 5.4 89 8-96 58-155 (351)
91 KOG4849|consensus 98.2 1.3E-06 2.9E-11 60.4 3.5 77 15-91 79-158 (498)
92 COG5175 MOT2 Transcriptional r 98.1 1.4E-05 3E-10 55.3 6.3 78 17-94 115-202 (480)
93 KOG4210|consensus 98.1 6.1E-06 1.3E-10 56.5 4.3 83 16-98 184-267 (285)
94 KOG1365|consensus 98.0 4E-06 8.8E-11 58.7 1.8 78 16-94 161-242 (508)
95 PF08777 RRM_3: RNA binding mo 97.9 4.9E-05 1.1E-09 44.6 5.9 68 17-90 2-75 (105)
96 KOG1365|consensus 97.9 3.8E-05 8.3E-10 54.0 6.0 77 16-93 280-360 (508)
97 PF11608 Limkain-b1: Limkain b 97.9 0.00012 2.7E-09 41.0 6.6 67 17-93 3-75 (90)
98 PF05172 Nup35_RRM: Nup53/35/4 97.9 0.00012 2.5E-09 42.6 6.8 79 14-93 4-90 (100)
99 KOG1190|consensus 97.9 0.00015 3.2E-09 51.4 8.1 74 16-94 297-372 (492)
100 KOG4206|consensus 97.8 0.00017 3.7E-09 47.2 7.8 76 13-93 143-220 (221)
101 PF14605 Nup35_RRM_2: Nup53/35 97.8 0.00011 2.3E-09 37.9 5.3 52 17-75 2-53 (53)
102 KOG1457|consensus 97.8 3.3E-05 7.1E-10 50.7 4.1 61 13-77 207-267 (284)
103 KOG4307|consensus 97.7 0.00026 5.6E-09 53.3 8.3 75 15-90 866-942 (944)
104 KOG0129|consensus 97.7 0.00018 3.9E-09 52.1 7.3 69 9-77 363-432 (520)
105 KOG2314|consensus 97.6 0.00069 1.5E-08 50.0 8.6 78 13-91 55-140 (698)
106 KOG0129|consensus 97.6 0.0009 2E-08 48.7 8.7 64 13-77 256-325 (520)
107 KOG0106|consensus 97.6 7.6E-05 1.7E-09 49.0 3.0 72 13-92 96-168 (216)
108 KOG3152|consensus 97.5 0.00013 2.9E-09 48.6 3.5 72 15-86 73-157 (278)
109 KOG0128|consensus 97.4 9.8E-05 2.1E-09 56.3 2.1 78 16-94 736-814 (881)
110 KOG1190|consensus 97.3 0.0013 2.7E-08 46.9 7.0 76 15-94 413-490 (492)
111 KOG0120|consensus 97.3 0.0012 2.6E-08 48.3 7.1 62 32-93 425-490 (500)
112 KOG1548|consensus 97.3 0.0025 5.3E-08 44.5 7.7 81 11-95 260-352 (382)
113 PF08952 DUF1866: Domain of un 97.2 0.0043 9.3E-08 38.4 7.4 55 32-94 52-106 (146)
114 KOG1456|consensus 97.2 0.0024 5.2E-08 45.1 6.7 81 10-96 25-108 (494)
115 KOG1456|consensus 97.1 0.0083 1.8E-07 42.5 9.0 79 12-95 283-363 (494)
116 KOG1855|consensus 97.1 0.00097 2.1E-08 47.6 4.4 66 13-78 228-306 (484)
117 KOG4307|consensus 97.1 0.00059 1.3E-08 51.5 3.4 81 14-95 432-514 (944)
118 PF10309 DUF2414: Protein of u 96.9 0.017 3.7E-07 30.6 7.2 55 15-77 4-61 (62)
119 KOG4676|consensus 96.8 0.0032 7E-08 44.7 4.9 78 15-92 6-86 (479)
120 KOG2193|consensus 96.7 0.0017 3.8E-08 46.5 3.1 77 18-101 3-82 (584)
121 KOG0105|consensus 96.5 0.021 4.6E-07 36.9 6.8 57 14-77 113-169 (241)
122 PF08675 RNA_bind: RNA binding 96.5 0.03 6.6E-07 31.4 6.6 54 15-77 8-61 (87)
123 KOG0112|consensus 96.4 0.0069 1.5E-07 47.0 4.9 82 12-99 451-535 (975)
124 KOG2068|consensus 96.4 0.001 2.3E-08 46.0 0.4 78 17-95 78-163 (327)
125 KOG0128|consensus 96.4 0.00016 3.4E-09 55.2 -3.8 63 16-78 667-729 (881)
126 PF03467 Smg4_UPF3: Smg-4/UPF3 96.2 0.01 2.2E-07 38.0 4.1 69 14-82 5-80 (176)
127 KOG2202|consensus 96.1 0.0033 7.2E-08 42.1 1.5 59 33-92 85-145 (260)
128 KOG4285|consensus 96.1 0.11 2.5E-06 35.9 8.8 78 15-99 196-274 (350)
129 KOG2416|consensus 95.9 0.015 3.3E-07 43.4 4.4 77 11-93 439-520 (718)
130 KOG0112|consensus 95.7 0.0036 7.8E-08 48.5 0.6 84 10-94 366-450 (975)
131 KOG1996|consensus 95.7 0.082 1.8E-06 36.5 6.9 62 30-91 300-363 (378)
132 KOG0115|consensus 95.6 0.019 4.2E-07 38.6 3.6 73 17-90 32-109 (275)
133 PF15023 DUF4523: Protein of u 95.1 0.24 5.2E-06 30.8 6.9 74 13-93 83-160 (166)
134 PF07576 BRAP2: BRCA1-associat 94.8 0.46 9.9E-06 28.2 8.9 66 17-84 13-81 (110)
135 KOG2135|consensus 94.6 0.031 6.6E-07 40.7 2.5 72 18-95 374-446 (526)
136 PF04847 Calcipressin: Calcipr 93.4 0.72 1.6E-05 29.9 6.8 61 30-96 9-72 (184)
137 KOG4210|consensus 93.3 0.075 1.6E-06 36.7 2.5 79 15-93 87-166 (285)
138 KOG4483|consensus 93.2 0.7 1.5E-05 33.4 7.1 64 7-77 382-446 (528)
139 KOG0804|consensus 92.2 1.3 2.7E-05 32.6 7.3 68 13-83 71-141 (493)
140 KOG4660|consensus 92.0 0.42 9E-06 35.7 4.9 57 40-96 413-474 (549)
141 KOG2253|consensus 90.4 0.22 4.8E-06 37.8 2.3 69 13-90 37-106 (668)
142 PF03880 DbpA: DbpA RNA bindin 89.5 2.2 4.7E-05 23.2 6.6 59 25-92 10-74 (74)
143 smart00596 PRE_C2HC PRE_C2HC d 89.3 1.2 2.6E-05 24.1 3.9 61 31-93 2-63 (69)
144 PF07530 PRE_C2HC: Associated 87.8 2 4.3E-05 23.1 4.3 62 31-94 2-64 (68)
145 KOG4676|consensus 86.0 0.079 1.7E-06 37.9 -2.3 64 16-83 151-214 (479)
146 PF11767 SET_assoc: Histone ly 85.6 4 8.6E-05 21.9 6.4 53 27-88 11-64 (66)
147 KOG4410|consensus 82.5 5.7 0.00012 27.7 5.4 47 16-68 330-377 (396)
148 KOG2591|consensus 82.3 6.3 0.00014 30.0 5.9 69 13-88 172-245 (684)
149 KOG4574|consensus 79.1 1.8 3.9E-05 34.3 2.4 73 19-97 301-376 (1007)
150 KOG2318|consensus 73.2 36 0.00077 26.3 7.6 75 11-85 169-296 (650)
151 PF07292 NID: Nmi/IFP 35 domai 71.1 15 0.00032 20.9 4.2 23 13-35 49-71 (88)
152 PF15513 DUF4651: Domain of un 70.5 14 0.0003 19.5 4.2 18 31-48 9-26 (62)
153 KOG4019|consensus 69.3 4.1 8.9E-05 26.4 1.9 75 15-95 9-90 (193)
154 PF10567 Nab6_mRNP_bdg: RNA-re 68.1 21 0.00045 25.1 5.1 78 14-91 13-104 (309)
155 KOG4454|consensus 63.2 1.4 3E-05 29.5 -1.1 64 13-77 77-144 (267)
156 PRK11558 putative ssRNA endonu 59.3 24 0.00053 20.4 3.7 50 16-68 27-76 (97)
157 PF09707 Cas_Cas2CT1978: CRISP 57.5 33 0.00072 19.4 4.2 49 16-67 25-73 (86)
158 KOG0156|consensus 53.9 33 0.00073 25.7 4.6 60 19-87 35-97 (489)
159 KOG2891|consensus 53.4 28 0.0006 24.4 3.8 37 12-48 145-193 (445)
160 COG0724 RNA-binding proteins ( 52.6 33 0.00072 22.2 4.1 42 11-52 220-261 (306)
161 KOG4008|consensus 46.4 28 0.00061 23.7 2.9 31 14-44 38-68 (261)
162 PF10281 Ish1: Putative stress 46.2 23 0.00051 16.4 1.9 17 27-43 3-19 (38)
163 PF14893 PNMA: PNMA 43.8 21 0.00046 25.4 2.1 25 15-39 17-41 (331)
164 PF03468 XS: XS domain; Inter 42.6 73 0.0016 19.0 4.9 47 28-77 29-76 (116)
165 PF01479 S4: S4 domain; Inter 41.8 42 0.00092 16.0 2.7 23 66-88 14-36 (48)
166 PHA01632 hypothetical protein 41.0 40 0.00086 17.4 2.3 22 19-40 19-40 (64)
167 PF02714 DUF221: Domain of unk 38.6 44 0.00095 23.2 3.1 34 61-96 1-35 (325)
168 COG5193 LHP1 La protein, small 36.8 11 0.00024 27.5 -0.1 64 13-76 171-244 (438)
169 KOG1295|consensus 36.2 72 0.0015 23.3 3.8 64 14-77 5-71 (376)
170 PF03439 Spt5-NGN: Early trans 35.0 83 0.0018 17.4 3.4 22 56-77 42-63 (84)
171 KOG2295|consensus 34.1 4.3 9.3E-05 30.8 -2.5 68 15-82 230-298 (648)
172 PF15407 Spo7_2_N: Sporulation 32.8 16 0.00034 19.6 0.1 25 14-38 25-49 (67)
173 PF11411 DNA_ligase_IV: DNA li 31.4 43 0.00094 15.7 1.5 16 26-41 19-34 (36)
174 PF15063 TC1: Thyroid cancer p 29.2 43 0.00093 18.5 1.4 28 17-44 26-53 (79)
175 KOG0226|consensus 29.0 45 0.00098 23.0 1.8 79 14-93 94-176 (290)
176 COG0445 GidA Flavin-dependent 28.5 2.2E+02 0.0047 22.3 5.4 59 11-77 296-356 (621)
177 PF14111 DUF4283: Domain of un 28.1 1.2E+02 0.0026 18.2 3.6 34 16-49 104-138 (153)
178 KOG4213|consensus 23.9 1.4E+02 0.0031 19.6 3.3 36 41-77 132-169 (205)
179 PF13046 DUF3906: Protein of u 21.6 1.4E+02 0.0029 16.0 2.4 31 30-60 32-62 (64)
180 PF11823 DUF3343: Protein of u 21.5 1.1E+02 0.0023 16.3 2.1 19 59-77 2-20 (73)
181 PF08206 OB_RNB: Ribonuclease 20.3 47 0.001 16.9 0.5 37 57-93 7-44 (58)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.85 E-value=3.6e-20 Score=114.52 Aligned_cols=88 Identities=34% Similarity=0.574 Sum_probs=80.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEe
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~ 91 (115)
....++|||+|||+.+++++|+.+|.+||.|..+.++.++.+++++|||||+|.+.++|+.|+.. ++..|+|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34467899999999999999999999999999999999999999999999999999999999987 89999999999999
Q ss_pred ccCCccccc
Q psy13066 92 AVPRDVRLY 100 (115)
Q Consensus 92 a~~~~~~~~ 100 (115)
+.++....+
T Consensus 111 a~~~~~~~~ 119 (144)
T PLN03134 111 ANDRPSAPR 119 (144)
T ss_pred CCcCCCCCC
Confidence 987665443
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.82 E-value=4.7e-19 Score=123.16 Aligned_cols=83 Identities=18% Similarity=0.351 Sum_probs=78.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEecc
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~ 93 (115)
...+|||+|||..+++++|.++|++||.|..++++.++.++.++|||||+|.+.++|..|+.. +|..++|+.|+|+++.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 345799999999999999999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred CCcc
Q psy13066 94 PRDV 97 (115)
Q Consensus 94 ~~~~ 97 (115)
++..
T Consensus 348 ~~~~ 351 (352)
T TIGR01661 348 NKAY 351 (352)
T ss_pred CCCC
Confidence 8765
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.78 E-value=3e-18 Score=119.11 Aligned_cols=83 Identities=22% Similarity=0.429 Sum_probs=78.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEecc
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~ 93 (115)
+..+|||+|||..+++++|+.+|..||+|..+.++.++.+|+++|||||+|.+.++|..|+.. ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 467999999999999999999999999999999999988999999999999999999999987 8999999999999998
Q ss_pred CCcc
Q psy13066 94 PRDV 97 (115)
Q Consensus 94 ~~~~ 97 (115)
+...
T Consensus 82 ~~~~ 85 (352)
T TIGR01661 82 PSSD 85 (352)
T ss_pred cccc
Confidence 7654
No 4
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.77 E-value=1e-17 Score=116.35 Aligned_cols=86 Identities=22% Similarity=0.303 Sum_probs=79.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEE
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v 89 (115)
.+....++|||++||+++++++|+.+|..+|.|..++++.+..+++++|||||+|.++++|.+|+.. ++..+.++.|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 3455678999999999999999999999999999999999988999999999999999999999987 899999999999
Q ss_pred EeccCCc
Q psy13066 90 KRAVPRD 96 (115)
Q Consensus 90 ~~a~~~~ 96 (115)
.++.+..
T Consensus 182 ~~a~p~~ 188 (346)
T TIGR01659 182 SYARPGG 188 (346)
T ss_pred ecccccc
Confidence 9987654
No 5
>KOG0113|consensus
Probab=99.75 E-value=2.1e-17 Score=110.15 Aligned_cols=92 Identities=25% Similarity=0.503 Sum_probs=83.5
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEE
Q psy13066 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (115)
Q Consensus 9 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i 87 (115)
+....++-+||||+.|+..++|..|+..|..||+|..|.++.+..||+++|||||+|.++.++..|.+. .+..|+|+.|
T Consensus 94 p~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 94 PNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred CcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 334456788999999999999999999999999999999999999999999999999999999999988 8999999999
Q ss_pred EEEeccCCccccc
Q psy13066 88 ETKRAVPRDVRLY 100 (115)
Q Consensus 88 ~v~~a~~~~~~~~ 100 (115)
.|++...+....+
T Consensus 174 ~VDvERgRTvkgW 186 (335)
T KOG0113|consen 174 LVDVERGRTVKGW 186 (335)
T ss_pred EEEeccccccccc
Confidence 9998877665544
No 6
>KOG0121|consensus
Probab=99.75 E-value=5.3e-18 Score=100.71 Aligned_cols=81 Identities=23% Similarity=0.448 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEec
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a 92 (115)
..+++|||+||+..++|++|.++|+..|+|..|.+-.|+.+-.++|||||+|.+.++|+.|+.. ++..++.+.|.+++.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 4578999999999999999999999999999999999999999999999999999999999999 999999999999986
Q ss_pred cC
Q psy13066 93 VP 94 (115)
Q Consensus 93 ~~ 94 (115)
-.
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 54
No 7
>KOG0149|consensus
Probab=99.74 E-value=7.9e-18 Score=108.92 Aligned_cols=81 Identities=40% Similarity=0.722 Sum_probs=74.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEe
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKR 91 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~ 91 (115)
.|..-+.|||++|++.+..+.|+..|++||+|.+..++.|+.+|+++||+||.|.+.++|.+|++.-.-.|+||+..|..
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnl 87 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNL 87 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccch
Confidence 45566799999999999999999999999999999999999999999999999999999999998866679999987765
Q ss_pred c
Q psy13066 92 A 92 (115)
Q Consensus 92 a 92 (115)
|
T Consensus 88 A 88 (247)
T KOG0149|consen 88 A 88 (247)
T ss_pred h
Confidence 4
No 8
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.74 E-value=3.1e-17 Score=89.28 Aligned_cols=69 Identities=28% Similarity=0.663 Sum_probs=65.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEE
Q psy13066 19 VFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (115)
Q Consensus 19 l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~ 88 (115)
|||+|||..+++++|+.+|++||.+..+.+..+ .++..+++|||+|.+.++|+.|+.. ++..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999887 4889999999999999999999997 99999999875
No 9
>KOG0122|consensus
Probab=99.74 E-value=3.6e-17 Score=106.38 Aligned_cols=83 Identities=20% Similarity=0.398 Sum_probs=78.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEec
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a 92 (115)
.+..+|.|.||+.++++++|+++|.++|.+.++.+.+++.||.++|||||.|.++++|.+||.. +|.-+++-.|.|.|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 3566899999999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cCCc
Q psy13066 93 VPRD 96 (115)
Q Consensus 93 ~~~~ 96 (115)
+|+.
T Consensus 267 kP~~ 270 (270)
T KOG0122|consen 267 KPSN 270 (270)
T ss_pred CCCC
Confidence 9863
No 10
>KOG0125|consensus
Probab=99.71 E-value=7.1e-17 Score=108.83 Aligned_cols=93 Identities=24% Similarity=0.507 Sum_probs=82.2
Q ss_pred CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCC
Q psy13066 6 DDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG 84 (115)
Q Consensus 6 ~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g 84 (115)
++..++.+..+++|+|+|||+...+.||+.+|.+||.|.+|.|+.+. +-+|||+||+|.+.++|++|.+. ++..+.|
T Consensus 86 ~st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEG 163 (376)
T KOG0125|consen 86 PSTNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEG 163 (376)
T ss_pred CCCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeec
Confidence 34455566778999999999999999999999999999999999874 56899999999999999999998 9999999
Q ss_pred eEEEEEeccCCccccc
Q psy13066 85 RVVETKRAVPRDVRLY 100 (115)
Q Consensus 85 ~~i~v~~a~~~~~~~~ 100 (115)
|+|+|..|.++-...+
T Consensus 164 RkIEVn~ATarV~n~K 179 (376)
T KOG0125|consen 164 RKIEVNNATARVHNKK 179 (376)
T ss_pred eEEEEeccchhhccCC
Confidence 9999999988754443
No 11
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.70 E-value=2.9e-16 Score=115.04 Aligned_cols=82 Identities=18% Similarity=0.536 Sum_probs=77.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEecc
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~ 93 (115)
..++|||+|||+.+++++|+.+|+.||.|..+.+.+++.+++++|||||+|.+.++|..|+.. |+..++|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 457999999999999999999999999999999999988899999999999999999999999 8999999999999998
Q ss_pred CCc
Q psy13066 94 PRD 96 (115)
Q Consensus 94 ~~~ 96 (115)
+..
T Consensus 283 ~pP 285 (612)
T TIGR01645 283 TPP 285 (612)
T ss_pred CCc
Confidence 643
No 12
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.70 E-value=3e-16 Score=85.72 Aligned_cols=69 Identities=33% Similarity=0.602 Sum_probs=63.0
Q ss_pred EEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEE
Q psy13066 19 VFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (115)
Q Consensus 19 l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~ 88 (115)
|||+|||+.+++++|..+|..+|.+..+.+..++. +..+++|||+|.++++|..|+.. ++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 68999999999999999999999999999999975 89999999999999999999999 77999999874
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.69 E-value=4.8e-16 Score=113.89 Aligned_cols=79 Identities=20% Similarity=0.526 Sum_probs=74.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEecc
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~ 93 (115)
..++|||+|||..+++++|+.+|.+||.|.++.++.++.+|+++|||||+|.+.+++..|+.. ++..++|+.|+|....
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 457999999999999999999999999999999999999999999999999999999999987 8999999999998654
No 14
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.68 E-value=7.1e-16 Score=107.22 Aligned_cols=85 Identities=20% Similarity=0.405 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCC--eEEEE
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG--RVVET 89 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g--~~i~v 89 (115)
+...++|||+|||..+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++. ++..+.+ +.|.|
T Consensus 190 ~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V 269 (346)
T TIGR01659 190 SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTV 269 (346)
T ss_pred ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 34567899999999999999999999999999999999988999999999999999999999998 7887765 68889
Q ss_pred EeccCCcc
Q psy13066 90 KRAVPRDV 97 (115)
Q Consensus 90 ~~a~~~~~ 97 (115)
.++.....
T Consensus 270 ~~a~~~~~ 277 (346)
T TIGR01659 270 RLAEEHGK 277 (346)
T ss_pred EECCcccc
Confidence 88876543
No 15
>KOG0145|consensus
Probab=99.68 E-value=4.8e-16 Score=102.39 Aligned_cols=89 Identities=24% Similarity=0.426 Sum_probs=83.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEE
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~ 90 (115)
.++..+.|.|..||..+|+++++.+|.+.|+|+.+++++|+.+|.+.||+||.|.++++|++|+.. +|..+..+.|+|+
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 366678999999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred eccCCccccc
Q psy13066 91 RAVPRDVRLY 100 (115)
Q Consensus 91 ~a~~~~~~~~ 100 (115)
+|+|-....+
T Consensus 117 yARPSs~~Ik 126 (360)
T KOG0145|consen 117 YARPSSDSIK 126 (360)
T ss_pred eccCChhhhc
Confidence 9998776544
No 16
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.67 E-value=9.4e-16 Score=101.70 Aligned_cols=77 Identities=17% Similarity=0.279 Sum_probs=70.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEeccCC
Q psy13066 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPR 95 (115)
Q Consensus 16 ~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~a~~~ 95 (115)
.++|||+|||+.+++++|+.+|+.||.|.++.++.++. .+|||||+|.++++++.|+..++..|.|+.|.|..+..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 57999999999999999999999999999999988752 568999999999999999988999999999999988643
No 17
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.67 E-value=1.6e-15 Score=108.84 Aligned_cols=83 Identities=23% Similarity=0.415 Sum_probs=77.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEec
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRA 92 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~a 92 (115)
+...++|||+|||..+++++|+.+|.++|.|..+.++.++.+++++|||||+|.+.++|.+|+..++..+.|+.|.|..+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 44577999999999999999999999999999999999998999999999999999999999988999999999999876
Q ss_pred cCC
Q psy13066 93 VPR 95 (115)
Q Consensus 93 ~~~ 95 (115)
...
T Consensus 166 ~~~ 168 (457)
T TIGR01622 166 QAE 168 (457)
T ss_pred chh
Confidence 543
No 18
>KOG0126|consensus
Probab=99.65 E-value=3.5e-17 Score=102.51 Aligned_cols=78 Identities=32% Similarity=0.608 Sum_probs=72.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEec
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a 92 (115)
....+||+|||...||.+|.-+|++||.+..|.+++|..||+++||||+.|.++.+.--|+.. ||+.|.||.|+|+..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 345899999999999999999999999999999999999999999999999999988878777 899999999999744
No 19
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.65 E-value=2.2e-15 Score=110.65 Aligned_cols=77 Identities=22% Similarity=0.538 Sum_probs=73.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEeccC
Q psy13066 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVP 94 (115)
Q Consensus 18 ~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~~ 94 (115)
+|||+|||.++++++|..+|+++|.|..|++.++..+++++|||||+|.+.++|.+|+.. ++..+.|+.|+|.++..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 699999999999999999999999999999999998999999999999999999999988 78889999999998753
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.64 E-value=6.5e-15 Score=106.86 Aligned_cols=81 Identities=21% Similarity=0.464 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEec
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a 92 (115)
...++|||+|||..+++++|+.+|..||.|..+.++.+..+|.++|||||+|.+.++|..|+.. ++..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3457999999999999999999999999999999999988999999999999999999999987 899999999999998
Q ss_pred cC
Q psy13066 93 VP 94 (115)
Q Consensus 93 ~~ 94 (115)
..
T Consensus 373 ~~ 374 (509)
T TIGR01642 373 CV 374 (509)
T ss_pred cc
Confidence 54
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.63 E-value=5.7e-15 Score=105.98 Aligned_cols=78 Identities=33% Similarity=0.680 Sum_probs=74.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEecc
Q psy13066 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (115)
Q Consensus 16 ~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~ 93 (115)
.++|||+|||..+++++|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..|+.. ++..|.|+.|.|.++.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 58999999999999999999999999999999999988889999999999999999999987 8999999999999976
No 22
>KOG0144|consensus
Probab=99.62 E-value=1.6e-15 Score=105.49 Aligned_cols=86 Identities=26% Similarity=0.459 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc--CCCee--CCeEEE
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN--RPHNI--DGRVVE 88 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~--~~~~i--~g~~i~ 88 (115)
+.+.-.+||+.+|..|+|.||+.+|++||.+.+|.+++|+.++.++|||||.|.+.+++.+|+.+ +...+ ..+.|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 45566899999999999999999999999999999999999999999999999999999999988 45556 445788
Q ss_pred EEeccCCccc
Q psy13066 89 TKRAVPRDVR 98 (115)
Q Consensus 89 v~~a~~~~~~ 98 (115)
|++|..+.++
T Consensus 111 vk~Ad~E~er 120 (510)
T KOG0144|consen 111 VKYADGERER 120 (510)
T ss_pred ecccchhhhc
Confidence 9998877665
No 23
>KOG0130|consensus
Probab=99.62 E-value=1.7e-15 Score=90.91 Aligned_cols=87 Identities=18% Similarity=0.321 Sum_probs=79.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEE
Q psy13066 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (115)
Q Consensus 10 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~ 88 (115)
++.+.....|||++++...++++|...|..||+|..+++..++.||-.+|||+|+|.+.+.|.+|+.. |+..|.|..|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 33444567899999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred EEeccCCc
Q psy13066 89 TKRAVPRD 96 (115)
Q Consensus 89 v~~a~~~~ 96 (115)
|+|+.-+.
T Consensus 146 VDw~Fv~g 153 (170)
T KOG0130|consen 146 VDWCFVKG 153 (170)
T ss_pred EEEEEecC
Confidence 99986443
No 24
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.62 E-value=5e-15 Score=108.77 Aligned_cols=84 Identities=29% Similarity=0.474 Sum_probs=77.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEec
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a 92 (115)
....+|||+||+..+++++|+.+|+.||.|..+.++.+ .+|.++|||||+|.+.++|.+|+.. ++..++|+.|.|.++
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 34568999999999999999999999999999999999 4899999999999999999999988 899999999999999
Q ss_pred cCCccc
Q psy13066 93 VPRDVR 98 (115)
Q Consensus 93 ~~~~~~ 98 (115)
.++..+
T Consensus 362 ~~k~~~ 367 (562)
T TIGR01628 362 QRKEQR 367 (562)
T ss_pred cCcHHH
Confidence 887654
No 25
>KOG0108|consensus
Probab=99.61 E-value=4.4e-15 Score=105.19 Aligned_cols=84 Identities=24% Similarity=0.489 Sum_probs=79.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEeccCC
Q psy13066 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPR 95 (115)
Q Consensus 17 ~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~~~ 95 (115)
+.+||||+|.++++++|..+|...|.|..++++.|+.+|+++||+|++|.+.+++..|++. ++.++.|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999999999999999999999999999999999999 899999999999998766
Q ss_pred ccccc
Q psy13066 96 DVRLY 100 (115)
Q Consensus 96 ~~~~~ 100 (115)
..+.+
T Consensus 99 ~~~~~ 103 (435)
T KOG0108|consen 99 KNAER 103 (435)
T ss_pred chhHH
Confidence 55443
No 26
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.61 E-value=2e-14 Score=94.24 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=69.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEecc
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAV 93 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~a~ 93 (115)
...++||+||++.+++++|+++|+.+|.|..+.++++. ...++|||+|.+++.++.|+..+|..|.|+.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 45799999999999999999999999999999999884 44589999999999999999889999999999997754
No 27
>smart00362 RRM_2 RNA recognition motif.
Probab=99.61 E-value=1.8e-14 Score=77.85 Aligned_cols=71 Identities=27% Similarity=0.585 Sum_probs=64.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEE
Q psy13066 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (115)
Q Consensus 18 ~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~ 90 (115)
+++|+|||..+++++|+.+|.++|.+..+.+..++ +.++|+||++|.+.++|..|+.. ++..++|+.+.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999888776 77889999999999999999988 7788999988763
No 28
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.59 E-value=1.2e-14 Score=106.23 Aligned_cols=80 Identities=25% Similarity=0.470 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCee-CCeEEEEE
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI-DGRVVETK 90 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i-~g~~i~v~ 90 (115)
+...++|||+|||.++++++|+.+|+++|.|..++++.+ .+|.++|||||+|.+.++|.+|++. ++..+ .|+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 445689999999999999999999999999999999999 6999999999999999999999998 77777 47777776
Q ss_pred ecc
Q psy13066 91 RAV 93 (115)
Q Consensus 91 ~a~ 93 (115)
.+.
T Consensus 134 ~S~ 136 (578)
T TIGR01648 134 ISV 136 (578)
T ss_pred ccc
Confidence 553
No 29
>PLN03213 repressor of silencing 3; Provisional
Probab=99.59 E-value=1.1e-14 Score=103.20 Aligned_cols=79 Identities=18% Similarity=0.307 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCH--HHHHHHHhc-CCCeeCCeEEEE
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEA--KMVDDAMSN-RPHNIDGRVVET 89 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~--~~a~~al~~-~~~~i~g~~i~v 89 (115)
.....+||||||++.+++++|+..|..||.|..+.+++ .+| +|||||+|.+. .++.+|+.. ++..+.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 34557999999999999999999999999999999984 466 89999999987 679999998 999999999999
Q ss_pred EeccCC
Q psy13066 90 KRAVPR 95 (115)
Q Consensus 90 ~~a~~~ 95 (115)
..|+|.
T Consensus 83 NKAKP~ 88 (759)
T PLN03213 83 EKAKEH 88 (759)
T ss_pred eeccHH
Confidence 998764
No 30
>KOG4207|consensus
Probab=99.59 E-value=4.8e-15 Score=94.71 Aligned_cols=83 Identities=29% Similarity=0.587 Sum_probs=76.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEE
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v 89 (115)
.+-+.-.+|-|.||...++.++|+.+|++||.|-+|.|..|+.|+.++|||||.|....+|++|+.+ +|..++|+.|.|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 3444567899999999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred Eecc
Q psy13066 90 KRAV 93 (115)
Q Consensus 90 ~~a~ 93 (115)
..|.
T Consensus 88 q~ar 91 (256)
T KOG4207|consen 88 QMAR 91 (256)
T ss_pred hhhh
Confidence 8765
No 31
>KOG0107|consensus
Probab=99.59 E-value=1.1e-14 Score=90.78 Aligned_cols=78 Identities=24% Similarity=0.484 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEecc
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~ 93 (115)
-.+.|||+||+..+++.+|+..|..||.+..+.+-.+ +.|||||+|.++.+|+.|+.. ++..|+|..|.|..+.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 4678999999999999999999999999999988664 468999999999999999999 8999999999998877
Q ss_pred CCcc
Q psy13066 94 PRDV 97 (115)
Q Consensus 94 ~~~~ 97 (115)
.+..
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 5544
No 32
>smart00360 RRM RNA recognition motif.
Probab=99.58 E-value=3.3e-14 Score=76.56 Aligned_cols=69 Identities=28% Similarity=0.592 Sum_probs=63.9
Q ss_pred EcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEE
Q psy13066 21 IGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (115)
Q Consensus 21 v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v 89 (115)
|+|||..+++++|+.+|.++|.+..+.+..++.++.++|+|||+|.+.++|..|+.. ++..++|+.+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 578999999999999999999999999998877789999999999999999999988 778899998876
No 33
>KOG0148|consensus
Probab=99.58 E-value=1.1e-14 Score=96.33 Aligned_cols=82 Identities=26% Similarity=0.507 Sum_probs=78.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEeccC
Q psy13066 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVP 94 (115)
Q Consensus 16 ~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~~ 94 (115)
..-+||+.|.+.++-++|++.|.+||+|.+.++++|..|++++||+||.|-..++|+.||.. +|..|.+|.|+..||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 56899999999999999999999999999999999999999999999999999999999999 89999999999999987
Q ss_pred Ccc
Q psy13066 95 RDV 97 (115)
Q Consensus 95 ~~~ 97 (115)
|..
T Consensus 142 Kp~ 144 (321)
T KOG0148|consen 142 KPS 144 (321)
T ss_pred Ccc
Confidence 763
No 34
>KOG0111|consensus
Probab=99.57 E-value=3.1e-15 Score=96.46 Aligned_cols=86 Identities=29% Similarity=0.563 Sum_probs=80.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEec
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a 92 (115)
...++|||++|..++++.-|...|-+||+|..+.++.|-.+++.+||+||+|...++|.+|+.. +..++.|+.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 4567999999999999999999999999999999999989999999999999999999999999 899999999999999
Q ss_pred cCCcccc
Q psy13066 93 VPRDVRL 99 (115)
Q Consensus 93 ~~~~~~~ 99 (115)
.|.....
T Consensus 88 kP~kike 94 (298)
T KOG0111|consen 88 KPEKIKE 94 (298)
T ss_pred CCccccC
Confidence 9875543
No 35
>KOG0117|consensus
Probab=99.57 E-value=2.6e-14 Score=99.83 Aligned_cols=82 Identities=23% Similarity=0.490 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCee-CCeEEEEEe
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI-DGRVVETKR 91 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i-~g~~i~v~~ 91 (115)
...+.|||+.||.++.|++|..+|.+.|.|.+++++.++.+|.++|||||.|.+.+.|..|++. |+.+| .|+.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 4568999999999999999999999999999999999999999999999999999999999998 88877 888898887
Q ss_pred ccCC
Q psy13066 92 AVPR 95 (115)
Q Consensus 92 a~~~ 95 (115)
+..+
T Consensus 161 Svan 164 (506)
T KOG0117|consen 161 SVAN 164 (506)
T ss_pred eeec
Confidence 6543
No 36
>KOG0105|consensus
Probab=99.56 E-value=1.9e-14 Score=90.72 Aligned_cols=99 Identities=17% Similarity=0.326 Sum_probs=81.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEec
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a 92 (115)
...+++||+|||.++.+.+|+.+|-+||.|..|.+...+ ....||||+|.+..+|+.|+.. ++..++|..|+|.++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 456899999999999999999999999999999876543 3457999999999999999999 899999999999876
Q ss_pred cC---------------------------CccccceeeeceeeeeeeecC
Q psy13066 93 VP---------------------------RDVRLYLVFCVSVLISFVTFL 115 (115)
Q Consensus 93 ~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 115 (115)
.. ...+......++.++...+|+
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQ 130 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQ 130 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchH
Confidence 53 334445566666667666663
No 37
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.56 E-value=5.6e-14 Score=93.32 Aligned_cols=79 Identities=28% Similarity=0.645 Sum_probs=75.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEeccC
Q psy13066 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVP 94 (115)
Q Consensus 16 ~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~~ 94 (115)
.++|||+|||..+++++|..+|..+|.+..+.+..++.++..+|+|||+|.+.+++..|+.. ++..+.|+.|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999999988999999999999999999999999 78999999999999653
No 38
>KOG0148|consensus
Probab=99.55 E-value=4e-14 Score=93.64 Aligned_cols=87 Identities=21% Similarity=0.433 Sum_probs=77.1
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeC
Q psy13066 5 YDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID 83 (115)
Q Consensus 5 ~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~ 83 (115)
+++...+.+...+++||+|++..++|++++..|++||+|.+|++..+. ||+||.|.+.|.|.+||.. |+.+|.
T Consensus 153 fdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~ 226 (321)
T KOG0148|consen 153 FDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIG 226 (321)
T ss_pred HHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeC
Confidence 344455667778999999999999999999999999999999988774 8999999999999999999 999999
Q ss_pred CeEEEEEeccCCcc
Q psy13066 84 GRVVETKRAVPRDV 97 (115)
Q Consensus 84 g~~i~v~~a~~~~~ 97 (115)
|+.+++.|.+....
T Consensus 227 G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 227 GQLVRCSWGKEGDD 240 (321)
T ss_pred ceEEEEeccccCCC
Confidence 99999999875443
No 39
>KOG0127|consensus
Probab=99.53 E-value=7.9e-14 Score=99.62 Aligned_cols=83 Identities=25% Similarity=0.502 Sum_probs=77.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEeccC
Q psy13066 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVP 94 (115)
Q Consensus 16 ~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~~ 94 (115)
...|.|+|||+.+...+|+.+|+.||.+..+.|++.+ .|+.+|||||.|....+|..|++. |+..|+|++|.|+||.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 5689999999999999999999999999999999776 677789999999999999999999 99999999999999999
Q ss_pred Ccccc
Q psy13066 95 RDVRL 99 (115)
Q Consensus 95 ~~~~~ 99 (115)
++...
T Consensus 196 Kd~ye 200 (678)
T KOG0127|consen 196 KDTYE 200 (678)
T ss_pred ccccc
Confidence 87654
No 40
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.53 E-value=3.1e-13 Score=73.34 Aligned_cols=73 Identities=23% Similarity=0.575 Sum_probs=66.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEe
Q psy13066 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (115)
Q Consensus 18 ~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~ 91 (115)
+++|++||..+++++++.+|+.+|.+..+.+..++. +..+|+||++|.+.++|..|+.. ++..++|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~-~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD-TKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999988864 37789999999999999999998 77779999998863
No 41
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.51 E-value=2.5e-13 Score=99.47 Aligned_cols=76 Identities=21% Similarity=0.456 Sum_probs=68.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhc--CCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEe
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQW--GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~--G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~ 91 (115)
..++|||+||+..+++++|+++|++| |.|.++.++ ++||||+|.+.++|.+|++. ++..|+|+.|+|++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45789999999999999999999999 999998754 35999999999999999987 89999999999999
Q ss_pred ccCCccc
Q psy13066 92 AVPRDVR 98 (115)
Q Consensus 92 a~~~~~~ 98 (115)
+.|+...
T Consensus 304 Akp~~~~ 310 (578)
T TIGR01648 304 AKPVDKK 310 (578)
T ss_pred ccCCCcc
Confidence 9886543
No 42
>KOG0131|consensus
Probab=99.51 E-value=4.3e-14 Score=88.68 Aligned_cols=80 Identities=25% Similarity=0.481 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEec
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a 92 (115)
....++||+||+..++++.|.++|-+.|++..+++.+++.++..+||||++|.++++|+=|+.. +...+.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 3456999999999999999999999999999999999999999999999999999999999999 888999999999988
Q ss_pred c
Q psy13066 93 V 93 (115)
Q Consensus 93 ~ 93 (115)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 43
>KOG0127|consensus
Probab=99.51 E-value=1.6e-13 Score=98.13 Aligned_cols=85 Identities=26% Similarity=0.479 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcC------C-CeeCCeE
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNR------P-HNIDGRV 86 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~------~-~~i~g~~ 86 (115)
...++|||+|||+++++++|...|++||.+..+.++.++.|+.++|.|||.|.++..+..||..- + ..++|+.
T Consensus 290 ~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~ 369 (678)
T KOG0127|consen 290 TEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRL 369 (678)
T ss_pred cccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccE
Confidence 34589999999999999999999999999999999999999999999999999999999999862 3 5689999
Q ss_pred EEEEeccCCccc
Q psy13066 87 VETKRAVPRDVR 98 (115)
Q Consensus 87 i~v~~a~~~~~~ 98 (115)
|.|..+.++.+.
T Consensus 370 Lkv~~Av~RkeA 381 (678)
T KOG0127|consen 370 LKVTLAVTRKEA 381 (678)
T ss_pred EeeeeccchHHH
Confidence 999999877554
No 44
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.50 E-value=3e-13 Score=97.89 Aligned_cols=76 Identities=11% Similarity=0.206 Sum_probs=68.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc---CCCeeCCeEEEEEe
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN---RPHNIDGRVVETKR 91 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~---~~~~i~g~~i~v~~ 91 (115)
++++|||+|||..+++++|+.+|++||.|..+.++.+ +++|||+|.+.++|..|+.. ++..+.|+.|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3579999999999999999999999999999988754 47999999999999999974 57899999999999
Q ss_pred ccCCc
Q psy13066 92 AVPRD 96 (115)
Q Consensus 92 a~~~~ 96 (115)
+.++.
T Consensus 75 s~~~~ 79 (481)
T TIGR01649 75 STSQE 79 (481)
T ss_pred cCCcc
Confidence 97653
No 45
>KOG4205|consensus
Probab=99.48 E-value=1.1e-13 Score=94.54 Aligned_cols=99 Identities=46% Similarity=0.769 Sum_probs=90.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEeccC
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~a~~ 94 (115)
..+.+||++|+++++++.|+..|.+||.+.++.+++++.++.++||+||+|.+.+.+.+++....+.|+|+.|.+..|.|
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 67899999999999999999999999999999999999999999999999999999999988878889999999999999
Q ss_pred Cccccceeeeceeeeeeee
Q psy13066 95 RDVRLYLVFCVSVLISFVT 113 (115)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~ 113 (115)
+....+.......++.|+.
T Consensus 85 r~~~~~~~~~~~tkkiFvG 103 (311)
T KOG4205|consen 85 REDQTKVGRHLRTKKIFVG 103 (311)
T ss_pred cccccccccccceeEEEec
Confidence 9988877766667777764
No 46
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.47 E-value=8.8e-13 Score=95.51 Aligned_cols=77 Identities=14% Similarity=0.241 Sum_probs=69.7
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEe
Q psy13066 14 ESLRKVFIGGLDY-RTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (115)
Q Consensus 14 ~~~~~l~v~~lp~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~ 91 (115)
...++|||+|||+ .+++++|+.+|+.||.|..+.++.++ +|+|||+|.+.++|..|+.. ++..|.|+.|.|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4567999999998 69999999999999999999998863 58999999999999999987 89999999999998
Q ss_pred ccCC
Q psy13066 92 AVPR 95 (115)
Q Consensus 92 a~~~ 95 (115)
+..+
T Consensus 348 s~~~ 351 (481)
T TIGR01649 348 SKQQ 351 (481)
T ss_pred cccc
Confidence 8643
No 47
>KOG0114|consensus
Probab=99.47 E-value=1.2e-12 Score=75.43 Aligned_cols=84 Identities=24% Similarity=0.424 Sum_probs=73.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEE
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v 89 (115)
-++...+-|||.|||..+|.++...+|.+||.|..+++-..+ ..+|-|||.|.+..+|..|+.. .|..++++.+.|
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 345566789999999999999999999999999999886654 4679999999999999999998 899999999999
Q ss_pred EeccCCcc
Q psy13066 90 KRAVPRDV 97 (115)
Q Consensus 90 ~~a~~~~~ 97 (115)
-+-++...
T Consensus 90 lyyq~~~~ 97 (124)
T KOG0114|consen 90 LYYQPEDA 97 (124)
T ss_pred EecCHHHH
Confidence 98877544
No 48
>KOG0117|consensus
Probab=99.46 E-value=2.7e-13 Score=94.81 Aligned_cols=78 Identities=24% Similarity=0.471 Sum_probs=71.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEecc
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~ 93 (115)
..+.|||.||+.++|++.|++.|++||.+.++..++| ||||.|.++++|.+|++. ++.+|+|..|.|..|+
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 4579999999999999999999999999999976654 999999999999999999 9999999999999999
Q ss_pred CCccccc
Q psy13066 94 PRDVRLY 100 (115)
Q Consensus 94 ~~~~~~~ 100 (115)
|..++..
T Consensus 330 P~~k~k~ 336 (506)
T KOG0117|consen 330 PVDKKKK 336 (506)
T ss_pred Chhhhcc
Confidence 9876654
No 49
>KOG0144|consensus
Probab=99.41 E-value=3.9e-13 Score=93.78 Aligned_cols=84 Identities=25% Similarity=0.437 Sum_probs=74.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCC-ee--CCeEEEEE
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPH-NI--DGRVVETK 90 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~-~i--~g~~i~v~ 90 (115)
..+.|||+.|+..++|.+++++|.+||.|+++.+.++. .+.++|||||.|.+.+-|..|++. |+. .+ +..+|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 36789999999999999999999999999999999997 899999999999999999999998 543 33 56789999
Q ss_pred eccCCcccc
Q psy13066 91 RAVPRDVRL 99 (115)
Q Consensus 91 ~a~~~~~~~ 99 (115)
+|.++..+.
T Consensus 202 FADtqkdk~ 210 (510)
T KOG0144|consen 202 FADTQKDKD 210 (510)
T ss_pred ecccCCCch
Confidence 999877654
No 50
>KOG0415|consensus
Probab=99.41 E-value=7.1e-13 Score=90.77 Aligned_cols=84 Identities=25% Similarity=0.361 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEec
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a 92 (115)
.+...|||+-|.+.+++++|+-+|+.||.|..+.++++..||.+..||||+|.+.+++++|.-. ....|+++.|.|+++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 3456899999999999999999999999999999999999999999999999999999999888 688899999999998
Q ss_pred cCCcc
Q psy13066 93 VPRDV 97 (115)
Q Consensus 93 ~~~~~ 97 (115)
++-..
T Consensus 317 QSVsk 321 (479)
T KOG0415|consen 317 QSVSK 321 (479)
T ss_pred hhhhh
Confidence 76543
No 51
>KOG0132|consensus
Probab=99.39 E-value=1.6e-12 Score=96.06 Aligned_cols=93 Identities=18% Similarity=0.445 Sum_probs=79.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEeccC
Q psy13066 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVP 94 (115)
Q Consensus 16 ~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~~ 94 (115)
++||||++|+..++|.+|..+|+.||+|.+|.++.++ |||||.+....+|++|+.+ ....+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R------~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR------GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC------ceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 5899999999999999999999999999999887654 8999999999999999998 78889999999999998
Q ss_pred Cccccce--eeeceeeeeeeec
Q psy13066 95 RDVRLYL--VFCVSVLISFVTF 114 (115)
Q Consensus 95 ~~~~~~~--~~~~~~~~~~~~~ 114 (115)
+..+... .+.++....|+.|
T Consensus 495 ~G~kse~k~~wD~~lGVt~IP~ 516 (894)
T KOG0132|consen 495 KGPKSEYKDYWDVELGVTYIPW 516 (894)
T ss_pred CCcchhhhhhhhcccCeeEeeh
Confidence 8877733 3334445666665
No 52
>smart00361 RRM_1 RNA recognition motif.
Probab=99.39 E-value=5.2e-12 Score=69.07 Aligned_cols=60 Identities=25% Similarity=0.467 Sum_probs=53.1
Q ss_pred HHHHHHHhh----hcCCeeEEE-EEeCCCC--CCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEE
Q psy13066 30 DESLQAFFE----QWGEIVDVV-VMKDPIT--KRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (115)
Q Consensus 30 ~~~l~~~f~----~~G~i~~~~-~~~~~~~--~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v 89 (115)
+++|+.+|+ .||.+.++. ++.++.+ +.++|++||.|.+.++|..|+.. ++..++|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888888 999999995 6766656 88999999999999999999998 899999999876
No 53
>KOG0153|consensus
Probab=99.37 E-value=3.7e-12 Score=86.81 Aligned_cols=81 Identities=23% Similarity=0.478 Sum_probs=73.0
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc--CCCeeCCe
Q psy13066 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN--RPHNIDGR 85 (115)
Q Consensus 8 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~--~~~~i~g~ 85 (115)
..+.++...++|||++|-..+++.+|+.+|.+||+|..+.+.... ++|||+|.+.++|+.|.+. +...|+|+
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecce
Confidence 345667788999999999999999999999999999999887653 6999999999999999987 77889999
Q ss_pred EEEEEeccC
Q psy13066 86 VVETKRAVP 94 (115)
Q Consensus 86 ~i~v~~a~~ 94 (115)
+|.|.|+.+
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999999988
No 54
>KOG0147|consensus
Probab=99.37 E-value=1.1e-12 Score=93.72 Aligned_cols=76 Identities=30% Similarity=0.639 Sum_probs=72.0
Q ss_pred EEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEeccC
Q psy13066 19 VFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVP 94 (115)
Q Consensus 19 l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~~ 94 (115)
+||+||+++++++.++..|..||.|..+.+..+..||.++||+|++|.+.++|..|++. |+.+|-|+.|+|..-..
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 89999999999999999999999999999999988999999999999999999999998 89999999999876543
No 55
>KOG0124|consensus
Probab=99.37 E-value=5.5e-13 Score=91.76 Aligned_cols=76 Identities=21% Similarity=0.546 Sum_probs=72.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEec
Q psy13066 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (115)
Q Consensus 17 ~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a 92 (115)
+++|||.+.++..|+.|+..|..||+|.++.+..|+.|++.+|||||+|.-++.|.-|++. |+..++||.|+|...
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 6899999999999999999999999999999999999999999999999999999999999 899999999999743
No 56
>KOG4208|consensus
Probab=99.36 E-value=7.5e-12 Score=80.00 Aligned_cols=85 Identities=15% Similarity=0.306 Sum_probs=76.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhc-CCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEE
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQW-GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~-G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~ 88 (115)
.......-+|+..+|....+.++..+|.++ |.+...++.+++.||.++|||||+|.+.+.|+-|.+. |+..+.++.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 345556789999999999999999999988 6888889989999999999999999999999999999 78888999999
Q ss_pred EEeccCC
Q psy13066 89 TKRAVPR 95 (115)
Q Consensus 89 v~~a~~~ 95 (115)
|...-|.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9988776
No 57
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.34 E-value=1.7e-11 Score=64.12 Aligned_cols=55 Identities=24% Similarity=0.575 Sum_probs=48.6
Q ss_pred HHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEec
Q psy13066 33 LQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (115)
Q Consensus 33 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a 92 (115)
|...|++||.|..+.+..+. +++|||+|.+.++|..|+.. ++..++|+.|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 57889999999999886653 58999999999999999998 999999999999885
No 58
>KOG0145|consensus
Probab=99.30 E-value=4.8e-11 Score=79.06 Aligned_cols=83 Identities=22% Similarity=0.401 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEe
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~ 91 (115)
+.....+||=||.+++.|.-|..+|.+||.+..+++++|..+.+.+||+||.+.+-++|..|+.. +|..+.++.+.|++
T Consensus 275 ~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsF 354 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 354 (360)
T ss_pred CCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEE
Confidence 34467899999999999999999999999999999999998899999999999999999999999 99999999999988
Q ss_pred ccCC
Q psy13066 92 AVPR 95 (115)
Q Consensus 92 a~~~ 95 (115)
...+
T Consensus 355 Ktnk 358 (360)
T KOG0145|consen 355 KTNK 358 (360)
T ss_pred ecCC
Confidence 6654
No 59
>KOG4205|consensus
Probab=99.30 E-value=1.1e-11 Score=84.93 Aligned_cols=86 Identities=42% Similarity=0.796 Sum_probs=80.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEeccC
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~a~~ 94 (115)
....+||++||..+++++++..|.+||.|..+.++.|..+.+.+||+||.|.+++++.+++...-+.|+|+.+.|..|.|
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 35689999999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred Cccccc
Q psy13066 95 RDVRLY 100 (115)
Q Consensus 95 ~~~~~~ 100 (115)
+.....
T Consensus 176 k~~~~~ 181 (311)
T KOG4205|consen 176 KEVMQS 181 (311)
T ss_pred hhhccc
Confidence 987664
No 60
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.29 E-value=2.5e-11 Score=88.24 Aligned_cols=75 Identities=16% Similarity=0.365 Sum_probs=61.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcC------------CeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCC
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWG------------EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRP 79 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G------------~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~ 79 (115)
.....++|||+|||..+++++|..+|..++ .|..+. .++.+|||||+|.+.++|..||..++
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~------~~~~kg~afVeF~~~e~A~~Al~l~g 244 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN------INKEKNFAFLEFRTVEEATFAMALDS 244 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE------ECCCCCEEEEEeCCHHHHhhhhcCCC
Confidence 345578999999999999999999999752 223333 24457999999999999999997789
Q ss_pred CeeCCeEEEEEec
Q psy13066 80 HNIDGRVVETKRA 92 (115)
Q Consensus 80 ~~i~g~~i~v~~a 92 (115)
..+.|+.|.|...
T Consensus 245 ~~~~g~~l~v~r~ 257 (509)
T TIGR01642 245 IIYSNVFLKIRRP 257 (509)
T ss_pred eEeeCceeEecCc
Confidence 9999999999644
No 61
>KOG0123|consensus
Probab=99.28 E-value=2.1e-11 Score=85.62 Aligned_cols=83 Identities=22% Similarity=0.354 Sum_probs=76.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEeccCCcc
Q psy13066 19 VFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPRDV 97 (115)
Q Consensus 19 l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~~~~~ 97 (115)
+||.||+++++..+|..+|+.||.|..+++..+. +| ++|| ||+|.+++.|..|+.. ||..+.|++|.|....++.+
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 9999999999999999999999999999999996 55 9999 9999999999999999 89999999999999988887
Q ss_pred ccceeee
Q psy13066 98 RLYLVFC 104 (115)
Q Consensus 98 ~~~~~~~ 104 (115)
+.+....
T Consensus 156 r~~~~~~ 162 (369)
T KOG0123|consen 156 REAPLGE 162 (369)
T ss_pred hcccccc
Confidence 7654443
No 62
>KOG4212|consensus
Probab=99.28 E-value=3.6e-11 Score=84.47 Aligned_cols=79 Identities=22% Similarity=0.386 Sum_probs=72.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhh-hcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEec
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFE-QWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a 92 (115)
..+.+||+|||.+..+.+|+.++. +.|+|..+.+..|. +|+++|||.|+|++++.+++|++. +.++++|+.|.|...
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 446799999999999999999996 77999999999996 999999999999999999999999 899999999999765
Q ss_pred cC
Q psy13066 93 VP 94 (115)
Q Consensus 93 ~~ 94 (115)
..
T Consensus 122 ~d 123 (608)
T KOG4212|consen 122 HD 123 (608)
T ss_pred Cc
Confidence 44
No 63
>KOG0131|consensus
Probab=99.26 E-value=1.4e-11 Score=77.47 Aligned_cols=85 Identities=26% Similarity=0.479 Sum_probs=76.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEE-EEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEec
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDV-VVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a 92 (115)
...++||+||.+.+.+..|...|+.+|.+... .+++++.||+++|++|+.|.+.+.+.+|++. ++..++++++.|.++
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 34689999999999999999999999988764 7888888999999999999999999999999 899999999999999
Q ss_pred cCCcccc
Q psy13066 93 VPRDVRL 99 (115)
Q Consensus 93 ~~~~~~~ 99 (115)
..+....
T Consensus 175 ~k~~~kg 181 (203)
T KOG0131|consen 175 FKKDTKG 181 (203)
T ss_pred EecCCCc
Confidence 8665543
No 64
>KOG0124|consensus
Probab=99.26 E-value=2.6e-11 Score=83.66 Aligned_cols=80 Identities=19% Similarity=0.556 Sum_probs=74.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEecc
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~ 93 (115)
.-.++||..++++.+++||+.+|+-||+|..|.+-+.+..+..+||+|++|.+..+...|+.. |-+.++|..++|..+.
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 356899999999999999999999999999999999998889999999999999999999998 8889999999998776
Q ss_pred C
Q psy13066 94 P 94 (115)
Q Consensus 94 ~ 94 (115)
.
T Consensus 289 T 289 (544)
T KOG0124|consen 289 T 289 (544)
T ss_pred C
Confidence 3
No 65
>KOG0109|consensus
Probab=99.17 E-value=8.7e-11 Score=78.74 Aligned_cols=72 Identities=25% Similarity=0.595 Sum_probs=66.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEeccCC
Q psy13066 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPR 95 (115)
Q Consensus 17 ~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~~~ 95 (115)
..|||+|||..+++.+|+.+|++||.+.++.++.+ |+||...+...++.|+.. ++..|+|..|.|..++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 36899999999999999999999999999998876 999999999999999997 899999999999988877
Q ss_pred c
Q psy13066 96 D 96 (115)
Q Consensus 96 ~ 96 (115)
.
T Consensus 75 s 75 (346)
T KOG0109|consen 75 S 75 (346)
T ss_pred C
Confidence 3
No 66
>KOG0146|consensus
Probab=99.17 E-value=5.4e-11 Score=79.10 Aligned_cols=89 Identities=24% Similarity=0.355 Sum_probs=82.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEE
Q psy13066 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (115)
Q Consensus 10 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~ 88 (115)
..+..+.++|||=.||.+..+.+|...|-.||.|.+.++.-|+.|..++=|+||.|.++.++..||.. ||.-|+-++|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 34567789999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred EEeccCCccc
Q psy13066 89 TKRAVPRDVR 98 (115)
Q Consensus 89 v~~a~~~~~~ 98 (115)
|...+|++..
T Consensus 359 VQLKRPkdan 368 (371)
T KOG0146|consen 359 VQLKRPKDAN 368 (371)
T ss_pred hhhcCccccC
Confidence 9998888754
No 67
>KOG0146|consensus
Probab=99.15 E-value=1.2e-10 Score=77.41 Aligned_cols=85 Identities=22% Similarity=0.455 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCC-eeCC--eEEE
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPH-NIDG--RVVE 88 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~-~i~g--~~i~ 88 (115)
..+.+.|||+.|...-+|+|++.+|..||.+.++.+.+.+ .|.++||+||.|.+.-++..||.. ++. .+-| ..|.
T Consensus 16 g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 16 GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 3367889999999999999999999999999999999987 899999999999999999999988 432 3333 3577
Q ss_pred EEeccCCccc
Q psy13066 89 TKRAVPRDVR 98 (115)
Q Consensus 89 v~~a~~~~~~ 98 (115)
|.++....+|
T Consensus 95 VK~ADTdkER 104 (371)
T KOG0146|consen 95 VKFADTDKER 104 (371)
T ss_pred EEeccchHHH
Confidence 8888765544
No 68
>KOG0533|consensus
Probab=99.09 E-value=1.1e-09 Score=72.58 Aligned_cols=87 Identities=22% Similarity=0.334 Sum_probs=77.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEE
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~ 90 (115)
.+..++.++|.|||..+.+++|+++|..||.+..+.+..++ +|.+.|.|-|.|...++|.+|++. ++..++|+.+++.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 45556889999999999999999999999999999999997 899999999999999999999999 8899999999988
Q ss_pred eccCCcccc
Q psy13066 91 RAVPRDVRL 99 (115)
Q Consensus 91 ~a~~~~~~~ 99 (115)
...+.....
T Consensus 158 ~i~~~~~~~ 166 (243)
T KOG0533|consen 158 IISSPSQSK 166 (243)
T ss_pred EecCccccc
Confidence 776655443
No 69
>KOG4211|consensus
Probab=99.09 E-value=9.3e-10 Score=78.15 Aligned_cols=83 Identities=18% Similarity=0.338 Sum_probs=71.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEe
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKR 91 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~ 91 (115)
+......|.+.+||+++|+++|..+|+.. .|..+.+.+ .+|+..|-|||+|.++++++.|++.+...+..+.|+|..
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFT 82 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEc
Confidence 45566788899999999999999999998 456644444 479999999999999999999999999999999999998
Q ss_pred ccCCcc
Q psy13066 92 AVPRDV 97 (115)
Q Consensus 92 a~~~~~ 97 (115)
+.+.+.
T Consensus 83 ~~~~e~ 88 (510)
T KOG4211|consen 83 AGGAEA 88 (510)
T ss_pred cCCccc
Confidence 876654
No 70
>KOG0226|consensus
Probab=99.08 E-value=1.7e-10 Score=75.99 Aligned_cols=93 Identities=20% Similarity=0.363 Sum_probs=84.1
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCee
Q psy13066 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI 82 (115)
Q Consensus 4 ~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i 82 (115)
+.+++..+.+....+||++.|--+++++.+-..|.+|-.-...+++++..+|+++||+||.|.+..++.+|+.. +|..+
T Consensus 178 wedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV 257 (290)
T KOG0226|consen 178 WEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV 257 (290)
T ss_pred cCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc
Confidence 45677888899999999999999999999999999997777788899999999999999999999999999988 89999
Q ss_pred CCeEEEEEeccCCc
Q psy13066 83 DGRVVETKRAVPRD 96 (115)
Q Consensus 83 ~g~~i~v~~a~~~~ 96 (115)
+.+.|++..+..++
T Consensus 258 gsrpiklRkS~wke 271 (290)
T KOG0226|consen 258 GSRPIKLRKSEWKE 271 (290)
T ss_pred ccchhHhhhhhHHh
Confidence 99999988776655
No 71
>KOG4206|consensus
Probab=99.07 E-value=1.2e-09 Score=70.91 Aligned_cols=79 Identities=22% Similarity=0.440 Sum_probs=69.7
Q ss_pred CCeEEEcCCCCCCCHHHHHH----HhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEE
Q psy13066 16 LRKVFIGGLDYRTTDESLQA----FFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (115)
Q Consensus 16 ~~~l~v~~lp~~~~~~~l~~----~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~ 90 (115)
..|+||.||+.-+..++|+. +|++||.|..|.... +.+.+|=|||.|.+.+.|..|+.. +|.-+.|+.+++.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 33999999999999888777 999999999886544 678899999999999999999999 8999999999999
Q ss_pred eccCCcc
Q psy13066 91 RAVPRDV 97 (115)
Q Consensus 91 ~a~~~~~ 97 (115)
+|..+..
T Consensus 86 yA~s~sd 92 (221)
T KOG4206|consen 86 YAKSDSD 92 (221)
T ss_pred cccCccc
Confidence 9986654
No 72
>KOG0123|consensus
Probab=99.03 E-value=1.5e-09 Score=76.31 Aligned_cols=73 Identities=16% Similarity=0.368 Sum_probs=67.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEeccCCc
Q psy13066 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPRD 96 (115)
Q Consensus 18 ~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~~~~ 96 (115)
.|||| +.+++..|.+.|+.+|++..+++-++. | +.|||||.|.++.+|++||.. |...+.|++|++-|+....
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 68998 999999999999999999999999997 5 999999999999999999999 7888999999999987543
No 73
>KOG0116|consensus
Probab=99.01 E-value=2.9e-09 Score=75.58 Aligned_cols=81 Identities=23% Similarity=0.392 Sum_probs=67.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEeccCC
Q psy13066 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPR 95 (115)
Q Consensus 16 ~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~a~~~ 95 (115)
..+|||.|||.+++.++|+.+|.+||.|....+..-...++...||||+|.+.+.+..|+.++...|+++++.|..-++.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecccc
Confidence 34599999999999999999999999999875543322344448999999999999999999999999999999876654
Q ss_pred c
Q psy13066 96 D 96 (115)
Q Consensus 96 ~ 96 (115)
.
T Consensus 368 ~ 368 (419)
T KOG0116|consen 368 F 368 (419)
T ss_pred c
Confidence 3
No 74
>KOG0110|consensus
Probab=98.99 E-value=2.4e-09 Score=78.82 Aligned_cols=77 Identities=26% Similarity=0.493 Sum_probs=67.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCC---CcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEec
Q psy13066 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITK---RSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (115)
Q Consensus 17 ~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~---~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a 92 (115)
+.+|+.||++.++.+++...|...|.|..+.+...+... -+.|||||+|.+.++|..|+.. +|..|+|+.|.|..+
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 449999999999999999999999999988776654221 2359999999999999999999 789999999999988
Q ss_pred c
Q psy13066 93 V 93 (115)
Q Consensus 93 ~ 93 (115)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 7
No 75
>KOG4661|consensus
Probab=98.99 E-value=2.8e-09 Score=77.42 Aligned_cols=82 Identities=21% Similarity=0.467 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEec
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a 92 (115)
.-.++|||.+|...+...+|+.+|++||.|...+++++..+.-.+=|+||++.+..+|.+||.. +..+|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 3457999999999999999999999999999999999977777788999999999999999999 899999999999877
Q ss_pred cCC
Q psy13066 93 VPR 95 (115)
Q Consensus 93 ~~~ 95 (115)
...
T Consensus 483 KNE 485 (940)
T KOG4661|consen 483 KNE 485 (940)
T ss_pred ccC
Confidence 643
No 76
>KOG0109|consensus
Probab=98.95 E-value=2e-09 Score=72.28 Aligned_cols=76 Identities=20% Similarity=0.466 Sum_probs=69.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEe
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~ 91 (115)
....++++|+||.+.++..+++..|++||.+.++.++++ |+||.|.-.++|..|++. ++.++.|+++.|..
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 446779999999999999999999999999999988775 999999999999999988 89999999999998
Q ss_pred ccCCc
Q psy13066 92 AVPRD 96 (115)
Q Consensus 92 a~~~~ 96 (115)
+.++-
T Consensus 147 stsrl 151 (346)
T KOG0109|consen 147 STSRL 151 (346)
T ss_pred ecccc
Confidence 87654
No 77
>KOG0110|consensus
Probab=98.95 E-value=1e-09 Score=80.71 Aligned_cols=82 Identities=18% Similarity=0.389 Sum_probs=74.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEeccC
Q psy13066 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVP 94 (115)
Q Consensus 16 ~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~~ 94 (115)
.+.|+|.|||+..+-.+++.+|..||.+..++++.....+.++|||||+|.++.+|..|+.. ....+.|+.+.+.||..
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 57999999999999999999999999999999887755678899999999999999999988 67889999999999987
Q ss_pred Ccc
Q psy13066 95 RDV 97 (115)
Q Consensus 95 ~~~ 97 (115)
.+.
T Consensus 693 d~~ 695 (725)
T KOG0110|consen 693 DNT 695 (725)
T ss_pred chH
Confidence 654
No 78
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.94 E-value=1.8e-08 Score=58.15 Aligned_cols=80 Identities=16% Similarity=0.190 Sum_probs=65.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhc--CCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCee----CCeEEE
Q psy13066 16 LRKVFIGGLDYRTTDESLQAFFEQW--GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI----DGRVVE 88 (115)
Q Consensus 16 ~~~l~v~~lp~~~~~~~l~~~f~~~--G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i----~g~~i~ 88 (115)
.+||++.|||...+++.|.+.+... |....+-++.|..++-..|||||.|.+++.+...... +|..+ ..+.+.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 3799999999999999999888654 5666788888988899999999999999999988877 66555 355677
Q ss_pred EEeccCC
Q psy13066 89 TKRAVPR 95 (115)
Q Consensus 89 v~~a~~~ 95 (115)
|.+|.=+
T Consensus 81 i~yAriQ 87 (97)
T PF04059_consen 81 ISYARIQ 87 (97)
T ss_pred EehhHhh
Confidence 8777643
No 79
>KOG4209|consensus
Probab=98.91 E-value=3.3e-09 Score=70.23 Aligned_cols=83 Identities=24% Similarity=0.432 Sum_probs=76.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEE
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETK 90 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~ 90 (115)
......+.+|++|+....+.++++..|+.+|.+..+.+..+...+.++||+|++|.+.+.++.++..++..|.|+.+.|.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 44567789999999999999999999999999999999999988899999999999999999999989999999999987
Q ss_pred ecc
Q psy13066 91 RAV 93 (115)
Q Consensus 91 ~a~ 93 (115)
+..
T Consensus 176 ~~r 178 (231)
T KOG4209|consen 176 LKR 178 (231)
T ss_pred eee
Confidence 654
No 80
>KOG1548|consensus
Probab=98.90 E-value=2.1e-08 Score=68.77 Aligned_cols=80 Identities=20% Similarity=0.366 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCee--------EEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeC
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIV--------DVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID 83 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~ 83 (115)
+...+.|||.|||.++|.+++..+|+++|-|. .|++.++. .|+.+|-|.++|.-.+++.-|+.. ++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 33456799999999999999999999999664 47888886 699999999999999999999999 888999
Q ss_pred CeEEEEEecc
Q psy13066 84 GRVVETKRAV 93 (115)
Q Consensus 84 g~~i~v~~a~ 93 (115)
|+.|+|..|+
T Consensus 210 g~~~rVerAk 219 (382)
T KOG1548|consen 210 GKKLRVERAK 219 (382)
T ss_pred CcEEEEehhh
Confidence 9999998775
No 81
>KOG4660|consensus
Probab=98.89 E-value=2.5e-09 Score=76.93 Aligned_cols=76 Identities=17% Similarity=0.371 Sum_probs=67.1
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeE
Q psy13066 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (115)
Q Consensus 8 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~ 86 (115)
.+.+.+.+.++|+|.|||..+++++|...|+.||+|..++. +...+|.+||+|.+..+|++|++. ++.++.|+.
T Consensus 67 np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~ 141 (549)
T KOG4660|consen 67 NPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKR 141 (549)
T ss_pred CCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhh
Confidence 34444677889999999999999999999999999999653 566789999999999999999999 888999988
Q ss_pred EE
Q psy13066 87 VE 88 (115)
Q Consensus 87 i~ 88 (115)
|+
T Consensus 142 ~k 143 (549)
T KOG4660|consen 142 IK 143 (549)
T ss_pred hc
Confidence 88
No 82
>KOG4211|consensus
Probab=98.84 E-value=2.1e-08 Score=71.44 Aligned_cols=79 Identities=23% Similarity=0.375 Sum_probs=67.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeE-EEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEec
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVD-VVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRA 92 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~a 92 (115)
.....|.+++||+.+++++|.++|+..--+.. +.++.++ .+++.|-|||+|.+++.++.|+..+...|..+.|.|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 56678999999999999999999998754443 5566665 677999999999999999999999888999999999866
Q ss_pred c
Q psy13066 93 V 93 (115)
Q Consensus 93 ~ 93 (115)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 4
No 83
>KOG4212|consensus
Probab=98.84 E-value=1.2e-08 Score=72.01 Aligned_cols=75 Identities=17% Similarity=0.310 Sum_probs=66.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEe
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~ 91 (115)
..+.++|+|.|||.++|+.-|+.-|..+|.+....++. +|+++| -|.|.++++|++|+.. ++..++|+.|+|.+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 45678999999999999999999999999999887744 477776 7899999999999999 89999999999986
Q ss_pred c
Q psy13066 92 A 92 (115)
Q Consensus 92 a 92 (115)
.
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 3
No 84
>KOG0151|consensus
Probab=98.76 E-value=3.7e-08 Score=72.96 Aligned_cols=82 Identities=15% Similarity=0.285 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCC---CCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEE
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPI---TKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~ 88 (115)
+...+++||+||++.+++.+|-..|..||++..++++..+. ....+.|+||.|.+..++++|+.. ++..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 45568999999999999999999999999999998876652 245677999999999999999999 89999999999
Q ss_pred EEeccC
Q psy13066 89 TKRAVP 94 (115)
Q Consensus 89 v~~a~~ 94 (115)
+.|+.+
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 998844
No 85
>KOG1457|consensus
Probab=98.71 E-value=2.7e-07 Score=60.28 Aligned_cols=85 Identities=15% Similarity=0.283 Sum_probs=64.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeC-CCCCCcccEEEEEEcCHHHHHHHHhc-CCCee---CCe
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKD-PITKRSRGFGFITYSEAKMVDDAMSN-RPHNI---DGR 85 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~-~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i---~g~ 85 (115)
.+....+||||.+||.++-..+|..+|+.+-.-+...+... +...-.+-+||+.|.+...|.+|+.. ||..+ .+.
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 34556899999999999999999999998865555555433 22223357999999999999999988 88877 455
Q ss_pred EEEEEeccCC
Q psy13066 86 VVETKRAVPR 95 (115)
Q Consensus 86 ~i~v~~a~~~ 95 (115)
.|++..|++.
T Consensus 109 tLhiElAKSN 118 (284)
T KOG1457|consen 109 TLHIELAKSN 118 (284)
T ss_pred eeEeeehhcC
Confidence 6666666543
No 86
>KOG4454|consensus
Probab=98.67 E-value=9.9e-09 Score=66.61 Aligned_cols=79 Identities=14% Similarity=0.224 Sum_probs=70.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEe
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~ 91 (115)
....++|||+|+...++++-|.++|-+.|++.++.|...+ .++.+ ||||.|.++.++.-|+.. +|..+.+..+.+..
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 4556899999999999999999999999999999988876 66777 999999999999999999 89999888887765
Q ss_pred cc
Q psy13066 92 AV 93 (115)
Q Consensus 92 a~ 93 (115)
-.
T Consensus 84 r~ 85 (267)
T KOG4454|consen 84 RC 85 (267)
T ss_pred cc
Confidence 43
No 87
>KOG0147|consensus
Probab=98.62 E-value=1.9e-08 Score=72.35 Aligned_cols=83 Identities=24% Similarity=0.386 Sum_probs=75.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEe
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKR 91 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~ 91 (115)
++...+++|+-.++...+..+|..+|+.+|.|..+.++.++.++.++|.+||+|.+.+.+..|+...|..+.|.+|.|..
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQL 254 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecc
Confidence 34456789999999999999999999999999999999999999999999999999999999998888899999999976
Q ss_pred ccC
Q psy13066 92 AVP 94 (115)
Q Consensus 92 a~~ 94 (115)
...
T Consensus 255 sEa 257 (549)
T KOG0147|consen 255 SEA 257 (549)
T ss_pred cHH
Confidence 543
No 88
>KOG0106|consensus
Probab=98.58 E-value=9.3e-08 Score=62.42 Aligned_cols=69 Identities=29% Similarity=0.641 Sum_probs=61.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEeccC
Q psy13066 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVP 94 (115)
Q Consensus 18 ~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~~ 94 (115)
.+||++||....+.+++.+|..||.+..+.+. .||+||+|.+..+|..|+.- ++..+.|..+.+.++.+
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 58999999999999999999999999887753 36889999999999999988 88889998888888774
No 89
>KOG0120|consensus
Probab=98.55 E-value=1.8e-07 Score=67.69 Aligned_cols=90 Identities=23% Similarity=0.506 Sum_probs=79.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEE
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~ 90 (115)
.......+++++||...++.++.+.+..+|++....++.+..+|.++||||.+|.+......|+.. +|..+.++.+.|.
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 344567899999999999999999999999999999999998899999999999999999999999 8999999999998
Q ss_pred eccCCccccce
Q psy13066 91 RAVPRDVRLYL 101 (115)
Q Consensus 91 ~a~~~~~~~~~ 101 (115)
.|.+.......
T Consensus 365 ~A~~g~~~~~~ 375 (500)
T KOG0120|consen 365 RAIVGASNANV 375 (500)
T ss_pred hhhccchhccc
Confidence 88765544433
No 90
>KOG1995|consensus
Probab=98.29 E-value=1.9e-06 Score=59.55 Aligned_cols=89 Identities=18% Similarity=0.271 Sum_probs=77.3
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCee--------EEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-C
Q psy13066 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIV--------DVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R 78 (115)
Q Consensus 8 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~ 78 (115)
+...+....-++||-+||..+++.++..+|.+.|.|. .+.+.+++.|++.++-|.|.|.+...|++|+.. .
T Consensus 58 ~~~~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~a 137 (351)
T KOG1995|consen 58 SSMADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFA 137 (351)
T ss_pred CccccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhc
Confidence 4444555667999999999999999999999999774 467888889999999999999999999999998 8
Q ss_pred CCeeCCeEEEEEeccCCc
Q psy13066 79 PHNIDGRVVETKRAVPRD 96 (115)
Q Consensus 79 ~~~i~g~~i~v~~a~~~~ 96 (115)
+..+.|..|+|..|..+.
T Consensus 138 gkdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 138 GKDFCGNTIKVSLAERRT 155 (351)
T ss_pred cccccCCCchhhhhhhcc
Confidence 899999999998877554
No 91
>KOG4849|consensus
Probab=98.22 E-value=1.3e-06 Score=60.44 Aligned_cols=77 Identities=18% Similarity=0.329 Sum_probs=66.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcC--CeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEe
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWG--EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~ 91 (115)
....+||+||-+.+|+++|.+.+.+-| ++.++++..++.+|.++|||++...+....++.++. -..+|.|..-.|..
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 345799999999999999999999887 677888889999999999999999999999999988 46678887666543
No 92
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.09 E-value=1.4e-05 Score=55.33 Aligned_cols=78 Identities=24% Similarity=0.431 Sum_probs=60.2
Q ss_pred CeEEEcCCCCCCCHHH------HHHHhhhcCCeeEEEEEeCC-CCCCcccE--EEEEEcCHHHHHHHHhc-CCCeeCCeE
Q psy13066 17 RKVFIGGLDYRTTDES------LQAFFEQWGEIVDVVVMKDP-ITKRSRGF--GFITYSEAKMVDDAMSN-RPHNIDGRV 86 (115)
Q Consensus 17 ~~l~v~~lp~~~~~~~------l~~~f~~~G~i~~~~~~~~~-~~~~~~g~--~fv~f~~~~~a~~al~~-~~~~i~g~~ 86 (115)
.-+||-+||+-+..++ -.++|.+||.|.+|.+.+.- ......++ .||.|.+-++|.+|+.. +|..++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4589999999887665 26789999999998765432 11122233 49999999999999999 899999999
Q ss_pred EEEEeccC
Q psy13066 87 VETKRAVP 94 (115)
Q Consensus 87 i~v~~a~~ 94 (115)
|+..+...
T Consensus 195 lkatYGTT 202 (480)
T COG5175 195 LKATYGTT 202 (480)
T ss_pred EeeecCch
Confidence 99987654
No 93
>KOG4210|consensus
Probab=98.06 E-value=6.1e-06 Score=56.48 Aligned_cols=83 Identities=27% Similarity=0.496 Sum_probs=72.7
Q ss_pred CCeEE-EcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEeccC
Q psy13066 16 LRKVF-IGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (115)
Q Consensus 16 ~~~l~-v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~a~~ 94 (115)
..++| +++++..+++++|...|...|.|..+++..++.++..+|++|++|........++..+...+.++.+.+....+
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEP 263 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCC
Confidence 34555 99999999999999999999999999999999999999999999999999988887656678899999988877
Q ss_pred Cccc
Q psy13066 95 RDVR 98 (115)
Q Consensus 95 ~~~~ 98 (115)
....
T Consensus 264 ~~~~ 267 (285)
T KOG4210|consen 264 RPKS 267 (285)
T ss_pred Cccc
Confidence 6544
No 94
>KOG1365|consensus
Probab=97.95 E-value=4e-06 Score=58.71 Aligned_cols=78 Identities=23% Similarity=0.335 Sum_probs=64.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhh---c-CCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEe
Q psy13066 16 LRKVFIGGLDYRTTDESLQAFFEQ---W-GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKR 91 (115)
Q Consensus 16 ~~~l~v~~lp~~~~~~~l~~~f~~---~-G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~ 91 (115)
.-.+.+++||+++++.++..+|.. . |....+.++..+ +|+..|-||+.|..+++|..|+..+...|+-|.|++..
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 446778899999999999999963 2 355678888776 78999999999999999999999877777778777765
Q ss_pred ccC
Q psy13066 92 AVP 94 (115)
Q Consensus 92 a~~ 94 (115)
+..
T Consensus 240 STa 242 (508)
T KOG1365|consen 240 STA 242 (508)
T ss_pred HhH
Confidence 544
No 95
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.93 E-value=4.9e-05 Score=44.62 Aligned_cols=68 Identities=21% Similarity=0.366 Sum_probs=41.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc---C---CCeeCCeEEEEE
Q psy13066 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN---R---PHNIDGRVVETK 90 (115)
Q Consensus 17 ~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~---~---~~~i~g~~i~v~ 90 (115)
..|.+.+++..++.++|+..|+.+|.|..|.+... ..-|||.|.+.+.|..|+.. . +..|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 35788889999999999999999999998876443 24799999999999999876 2 445566555544
No 96
>KOG1365|consensus
Probab=97.91 E-value=3.8e-05 Score=53.98 Aligned_cols=77 Identities=22% Similarity=0.286 Sum_probs=65.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcC-CeeE--EEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEe
Q psy13066 16 LRKVFIGGLDYRTTDESLQAFFEQWG-EIVD--VVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (115)
Q Consensus 16 ~~~l~v~~lp~~~~~~~l~~~f~~~G-~i~~--~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~ 91 (115)
...+.+++||.+.+.++|..+|..|. .|.. ++++.+. .|.+.|-|||+|.+.+.+..|... ++....++.|+|..
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 45788999999999999999999886 4443 8888885 789999999999999999999888 66666799999876
Q ss_pred cc
Q psy13066 92 AV 93 (115)
Q Consensus 92 a~ 93 (115)
+-
T Consensus 359 ~S 360 (508)
T KOG1365|consen 359 CS 360 (508)
T ss_pred cc
Confidence 53
No 97
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.89 E-value=0.00012 Score=40.97 Aligned_cols=67 Identities=12% Similarity=0.296 Sum_probs=44.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhh----hcC-CeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEE
Q psy13066 17 RKVFIGGLDYRTTDESLQAFFE----QWG-EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (115)
Q Consensus 17 ~~l~v~~lp~~~~~~~l~~~f~----~~G-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~ 90 (115)
..|+|.|||.+.....|+.-+. .+| .+..+ +.+.|++.|.+++.|.+|.+. ++..+-|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4689999999998877655554 444 44443 126899999999999999988 7888999999999
Q ss_pred ecc
Q psy13066 91 RAV 93 (115)
Q Consensus 91 ~a~ 93 (115)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 864
No 98
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.88 E-value=0.00012 Score=42.64 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=52.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEE-EEeCC------CCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeE
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVV-VMKDP------ITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRV 86 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~-~~~~~------~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~ 86 (115)
...+.+.|-+.|+.. ...+...|+++|.|.+.. ...+. ........-.+.|.++.+|.+||..||..++|..
T Consensus 4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~ 82 (100)
T PF05172_consen 4 DSETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSL 82 (100)
T ss_dssp GGCCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCE
T ss_pred cCCeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcE
Confidence 345678888999994 467888999999987653 10000 0123346889999999999999999999998864
Q ss_pred E-EEEecc
Q psy13066 87 V-ETKRAV 93 (115)
Q Consensus 87 i-~v~~a~ 93 (115)
+ -|.+..
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4 466654
No 99
>KOG1190|consensus
Probab=97.86 E-value=0.00015 Score=51.45 Aligned_cols=74 Identities=16% Similarity=0.284 Sum_probs=64.8
Q ss_pred CCeEEEcCCCCC-CCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEecc
Q psy13066 16 LRKVFIGGLDYR-TTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (115)
Q Consensus 16 ~~~l~v~~lp~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~ 93 (115)
...|.|.||..+ +|.+.|..+|..||++.++++..++. --|.|.|.+...|.-|+.. .|..+.|+.|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 467888888665 78999999999999999999988752 4699999999999999998 8999999999999885
Q ss_pred C
Q psy13066 94 P 94 (115)
Q Consensus 94 ~ 94 (115)
=
T Consensus 372 H 372 (492)
T KOG1190|consen 372 H 372 (492)
T ss_pred C
Confidence 3
No 100
>KOG4206|consensus
Probab=97.85 E-value=0.00017 Score=47.20 Aligned_cols=76 Identities=14% Similarity=0.286 Sum_probs=62.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeC-CeEEEEE
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID-GRVVETK 90 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~-g~~i~v~ 90 (115)
..+...+++.+||.+++.+.+...|.+|..-.+++++... .+.|||+|.+...+..|... ++..|. .+.+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 3445689999999999999999999999988888887653 47899999999888888877 677665 7777776
Q ss_pred ecc
Q psy13066 91 RAV 93 (115)
Q Consensus 91 ~a~ 93 (115)
++.
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 653
No 101
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.82 E-value=0.00011 Score=37.87 Aligned_cols=52 Identities=25% Similarity=0.472 Sum_probs=41.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHH
Q psy13066 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAM 75 (115)
Q Consensus 17 ~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al 75 (115)
+.|-|.+.++...+. +...|.++|.|..+.+. ......|+.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 567888999887755 55588899999998764 23458999999999999885
No 102
>KOG1457|consensus
Probab=97.82 E-value=3.3e-05 Score=50.75 Aligned_cols=61 Identities=16% Similarity=0.300 Sum_probs=48.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~ 77 (115)
.....++||.||.++++|++|+.+|+.|.....+++... +|. -.||++|.+.+.|..|+..
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g~--~vaf~~~~~~~~at~am~~ 267 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GGM--PVAFADFEEIEQATDAMNH 267 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CCc--ceEeecHHHHHHHHHHHHH
Confidence 334569999999999999999999999965554454322 343 4799999999999999866
No 103
>KOG4307|consensus
Probab=97.75 E-value=0.00026 Score=53.29 Aligned_cols=75 Identities=15% Similarity=0.238 Sum_probs=62.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCee-EEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEE
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIV-DVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~-~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~ 90 (115)
.++.|-+.|+|+.++-+||.++|..|-.+. +|.+.++ ..|+..|-|.|.|.++++|.+|... ++..|..+.+.+.
T Consensus 866 Gp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 866 GPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CCeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 345888999999999999999999997555 4444444 4799999999999999999999887 7777888877765
No 104
>KOG0129|consensus
Probab=97.74 E-value=0.00018 Score=52.14 Aligned_cols=69 Identities=30% Similarity=0.440 Sum_probs=62.2
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhh-hcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc
Q psy13066 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFE-QWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (115)
Q Consensus 9 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~ 77 (115)
.++.=++.+|+|||+||.-++.++|..++. -||.|..+.|-.|+.-.-++|-|-|.|.+..+.-+||.+
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 444556778999999999999999999998 899999999999977888999999999999999999876
No 105
>KOG2314|consensus
Probab=97.61 E-value=0.00069 Score=49.95 Aligned_cols=78 Identities=15% Similarity=0.232 Sum_probs=61.0
Q ss_pred CCCCCeEEEcCCCCCCCH------HHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCee-CC
Q psy13066 13 PESLRKVFIGGLDYRTTD------ESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI-DG 84 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~------~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i-~g 84 (115)
+.-...++|.|+|..-.. .-|.++|+++|.+..+.++.+..+| .+||.|++|.++.+|..|++. +|..+ .+
T Consensus 55 eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 55 EGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred CCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 345567889999876442 3478889999999999888887555 999999999999999999988 77766 44
Q ss_pred eEEEEEe
Q psy13066 85 RVVETKR 91 (115)
Q Consensus 85 ~~i~v~~ 91 (115)
+...|..
T Consensus 134 Htf~v~~ 140 (698)
T KOG2314|consen 134 HTFFVRL 140 (698)
T ss_pred ceEEeeh
Confidence 5555543
No 106
>KOG0129|consensus
Probab=97.57 E-value=0.0009 Score=48.67 Aligned_cols=64 Identities=28% Similarity=0.540 Sum_probs=48.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCC--CC-CCccc---EEEEEEcCHHHHHHHHhc
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDP--IT-KRSRG---FGFITYSEAKMVDDAMSN 77 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~--~~-~~~~g---~~fv~f~~~~~a~~al~~ 77 (115)
..-.+.+|||+||++++|+.|...|..||.+. +.+.... .. --++| |+|+.|.++.++...+.+
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 34467899999999999999999999999753 3333111 11 12355 999999999999888766
No 107
>KOG0106|consensus
Probab=97.56 E-value=7.6e-05 Score=48.96 Aligned_cols=72 Identities=21% Similarity=0.423 Sum_probs=61.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEe
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~ 91 (115)
....+.+.+.+++..+.+.+|...|..+|.+..... ..+++||+|...+++..|+.. ++..+.|+.|.+..
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 455678999999999999999999999998844332 346899999999999999999 89999999999844
Q ss_pred c
Q psy13066 92 A 92 (115)
Q Consensus 92 a 92 (115)
.
T Consensus 168 ~ 168 (216)
T KOG0106|consen 168 N 168 (216)
T ss_pred c
Confidence 3
No 108
>KOG3152|consensus
Probab=97.49 E-value=0.00013 Score=48.63 Aligned_cols=72 Identities=13% Similarity=0.224 Sum_probs=57.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCC--------CCccc----EEEEEEcCHHHHHHHHhc-CCCe
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPIT--------KRSRG----FGFITYSEAKMVDDAMSN-RPHN 81 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~--------~~~~g----~~fv~f~~~~~a~~al~~-~~~~ 81 (115)
....||+++||+.+...-++.+|..||.|-+|.+-....+ |...+ -|.|+|.+-..|.+.... |+.-
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5579999999999999999999999999999877655433 22222 256899999999888777 7777
Q ss_pred eCCeE
Q psy13066 82 IDGRV 86 (115)
Q Consensus 82 i~g~~ 86 (115)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 77765
No 109
>KOG0128|consensus
Probab=97.38 E-value=9.8e-05 Score=56.28 Aligned_cols=78 Identities=14% Similarity=0.209 Sum_probs=66.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEeccC
Q psy13066 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVP 94 (115)
Q Consensus 16 ~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~~ 94 (115)
...++|.|.|+..|.++++.++...|.+..+.++..+ .|+++|.+|+.|.++.++.++... ....+.-+.+.+..+.|
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 3478999999999999999999999999999988886 899999999999999999999877 55555555666666555
No 110
>KOG1190|consensus
Probab=97.34 E-value=0.0013 Score=46.88 Aligned_cols=76 Identities=11% Similarity=0.195 Sum_probs=59.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCC-eEEEEEec
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG-RVVETKRA 92 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g-~~i~v~~a 92 (115)
+..++.+.|+|.+++|++++..|..-|...+... .-++.+.++++.+.+.++|-.|+.. +.+.+.+ +.++|+++
T Consensus 413 psatlHlsnip~svsee~lk~~f~~~g~~vkafk----ff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFS 488 (492)
T KOG1190|consen 413 PSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFK----FFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFS 488 (492)
T ss_pred chhheeeccCCcccchhHHHHhhhcCCceEEeee----ecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEee
Confidence 3458999999999999999999998875543321 1345667999999999999999877 5666644 47899887
Q ss_pred cC
Q psy13066 93 VP 94 (115)
Q Consensus 93 ~~ 94 (115)
+.
T Consensus 489 ks 490 (492)
T KOG1190|consen 489 KS 490 (492)
T ss_pred cc
Confidence 64
No 111
>KOG0120|consensus
Probab=97.33 E-value=0.0012 Score=48.34 Aligned_cols=62 Identities=15% Similarity=0.246 Sum_probs=49.5
Q ss_pred HHHHHhhhcCCeeEEEEEeC-C--CCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEecc
Q psy13066 32 SLQAFFEQWGEIVDVVVMKD-P--ITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (115)
Q Consensus 32 ~l~~~f~~~G~i~~~~~~~~-~--~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~ 93 (115)
+++.-+.+||.|..|.+.++ . ...-+.|..||+|.+.+++++|++. .|..++|+.+.+.|-.
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 34555678899999988776 2 2234567899999999999999999 7999999998887754
No 112
>KOG1548|consensus
Probab=97.27 E-value=0.0025 Score=44.47 Aligned_cols=81 Identities=17% Similarity=0.293 Sum_probs=61.5
Q ss_pred CCCCCCCeEEEcCCCC----CCC-------HHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-C
Q psy13066 11 TEPESLRKVFIGGLDY----RTT-------DESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R 78 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~----~~~-------~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~ 78 (115)
......++|.+.|+-. ..+ +++|+.-..+||.+..+.+.- ..+.|.+-|.|.+.+.|..|+.. +
T Consensus 260 sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~ 335 (382)
T KOG1548|consen 260 SKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMD 335 (382)
T ss_pred ccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhc
Confidence 3344567888887721 122 356677788999999987642 34678999999999999999999 8
Q ss_pred CCeeCCeEEEEEeccCC
Q psy13066 79 PHNIDGRVVETKRAVPR 95 (115)
Q Consensus 79 ~~~i~g~~i~v~~a~~~ 95 (115)
|..++|++|.......+
T Consensus 336 GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 336 GRWFDGRQLTASIWDGK 352 (382)
T ss_pred CeeecceEEEEEEeCCc
Confidence 99999999988765544
No 113
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.18 E-value=0.0043 Score=38.39 Aligned_cols=55 Identities=25% Similarity=0.410 Sum_probs=43.8
Q ss_pred HHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEeccC
Q psy13066 32 SLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (115)
Q Consensus 32 ~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~a~~ 94 (115)
++...|..||.+.-++++-+ .-.|+|.+-+.|.+|+..++..++|+.|.|+...|
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCc
Confidence 67778889998777666443 57899999999999999999999999999987655
No 114
>KOG1456|consensus
Probab=97.16 E-value=0.0024 Score=45.12 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=66.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc---CCCeeCCeE
Q psy13066 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN---RPHNIDGRV 86 (115)
Q Consensus 10 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~---~~~~i~g~~ 86 (115)
+.....+-.+.|++|...+++.++-+.++.||.|..+..+... .-+.++|.+.+.++.+... +...+.|+.
T Consensus 25 phk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq~ 98 (494)
T KOG1456|consen 25 PHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQ 98 (494)
T ss_pred CCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCch
Confidence 3345556689999999999999999999999999998766543 5789999999999998754 678899999
Q ss_pred EEEEeccCCc
Q psy13066 87 VETKRAVPRD 96 (115)
Q Consensus 87 i~v~~a~~~~ 96 (115)
-.+.++.++.
T Consensus 99 Al~NyStsq~ 108 (494)
T KOG1456|consen 99 ALFNYSTSQC 108 (494)
T ss_pred hhcccchhhh
Confidence 8888886543
No 115
>KOG1456|consensus
Probab=97.10 E-value=0.0083 Score=42.50 Aligned_cols=79 Identities=18% Similarity=0.211 Sum_probs=66.0
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEE
Q psy13066 12 EPESLRKVFIGGLDYR-TTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v 89 (115)
...+.+.++|-+|... +..+-|..+|..||.|.++++++.+ .|-|.|++.+...+++|+.. ++..+-|.+|.|
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 3445678889999876 4667899999999999999998864 36799999999999999988 788888989998
Q ss_pred EeccCC
Q psy13066 90 KRAVPR 95 (115)
Q Consensus 90 ~~a~~~ 95 (115)
..+...
T Consensus 358 ~~SkQ~ 363 (494)
T KOG1456|consen 358 CVSKQN 363 (494)
T ss_pred eecccc
Confidence 877543
No 116
>KOG1855|consensus
Probab=97.09 E-value=0.00097 Score=47.63 Aligned_cols=66 Identities=18% Similarity=0.246 Sum_probs=54.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeC---CCC--CC--------cccEEEEEEcCHHHHHHHHhcC
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKD---PIT--KR--------SRGFGFITYSEAKMVDDAMSNR 78 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~---~~~--~~--------~~g~~fv~f~~~~~a~~al~~~ 78 (115)
..+.++|.+.|||.+-.-+.|.++|..+|.|..|++... +.+ +. .+-+|+|+|...+.|.+|.+.+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 347899999999999998999999999999999987554 222 11 2568999999999999998774
No 117
>KOG4307|consensus
Probab=97.08 E-value=0.00059 Score=51.46 Aligned_cols=81 Identities=14% Similarity=0.067 Sum_probs=65.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeE-EEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEe
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVD-VVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~ 91 (115)
.....|||..||..+++.++..+|...-.+.+ |.+-+.+ +++.++.|||.|..++.+..|... ....+..+.|+|+.
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 34568999999999999999999987766666 6665655 788999999999997777777655 78889999999986
Q ss_pred ccCC
Q psy13066 92 AVPR 95 (115)
Q Consensus 92 a~~~ 95 (115)
...+
T Consensus 511 i~~~ 514 (944)
T KOG4307|consen 511 IADY 514 (944)
T ss_pred hhhH
Confidence 6543
No 118
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.91 E-value=0.017 Score=30.59 Aligned_cols=55 Identities=15% Similarity=0.314 Sum_probs=43.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhc---CCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQW---GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~---G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~ 77 (115)
.+..|+|.++.. ++.++|+.+|..| ....++.++-|. -|-+.|.+.+.|.+||.+
T Consensus 4 rpeavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 4 RPEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVA 61 (62)
T ss_pred eeceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHc
Confidence 345799999855 6678899999988 234688888884 578999999999999864
No 119
>KOG4676|consensus
Probab=96.79 E-value=0.0032 Score=44.66 Aligned_cols=78 Identities=13% Similarity=0.175 Sum_probs=60.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCC---CCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEe
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPI---TKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKR 91 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~ 91 (115)
....|.|.||.+..+.++++.+|.-.|.|..+.+..+.. -......|||-|.+...+..|-..-.+.+-|+.|.|-.
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p 85 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRP 85 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEe
Confidence 345899999999999999999999999999998766432 23456789999999999998877734455555555543
Q ss_pred c
Q psy13066 92 A 92 (115)
Q Consensus 92 a 92 (115)
.
T Consensus 86 ~ 86 (479)
T KOG4676|consen 86 Y 86 (479)
T ss_pred c
Confidence 3
No 120
>KOG2193|consensus
Probab=96.70 E-value=0.0017 Score=46.48 Aligned_cols=77 Identities=21% Similarity=0.408 Sum_probs=60.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcC-CeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-C-CCeeCCeEEEEEeccC
Q psy13066 18 KVFIGGLDYRTTDESLQAFFEQWG-EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R-PHNIDGRVVETKRAVP 94 (115)
Q Consensus 18 ~l~v~~lp~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~-~~~i~g~~i~v~~a~~ 94 (115)
.+|++||.+..+.++++.+|...- ....-.++. .||+|+++.+...+.+|++. + ..++.|+++.+..+.+
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 589999999999999999997541 111112222 37999999999999999998 3 6678999999999998
Q ss_pred Cccccce
Q psy13066 95 RDVRLYL 101 (115)
Q Consensus 95 ~~~~~~~ 101 (115)
+..+.+.
T Consensus 76 kkqrsrk 82 (584)
T KOG2193|consen 76 KKQRSRK 82 (584)
T ss_pred HHHHhhh
Confidence 8776654
No 121
>KOG0105|consensus
Probab=96.52 E-value=0.021 Score=36.86 Aligned_cols=57 Identities=21% Similarity=0.329 Sum_probs=50.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~ 77 (115)
.+...+.|++||++-+..+|+......|+++...+.++ |++.|+|...++.+=|+..
T Consensus 113 rSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ 169 (241)
T KOG0105|consen 113 RSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRK 169 (241)
T ss_pred ccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHh
Confidence 34568999999999999999999999999999887776 4888999999999999877
No 122
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.50 E-value=0.03 Score=31.44 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=40.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~ 77 (115)
.....+++ +|..|-..||..+|+.||.|. |.++.+ .-|||.....+.+..++..
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHH
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHH
Confidence 34456665 999999999999999999864 556655 3799999999999988766
No 123
>KOG0112|consensus
Probab=96.41 E-value=0.0069 Score=46.99 Aligned_cols=82 Identities=18% Similarity=0.327 Sum_probs=65.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCC--eEEE
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG--RVVE 88 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g--~~i~ 88 (115)
.....+.+|+++|.+++....+...|..||.|..|.+ .++.-|+|+.|.+...+..|+.. .+.-++| +.+.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy------~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY------RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeec------ccCCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 4456789999999999999999999999999998765 33456999999999999999988 5665643 4588
Q ss_pred EEeccCCcccc
Q psy13066 89 TKRAVPRDVRL 99 (115)
Q Consensus 89 v~~a~~~~~~~ 99 (115)
|+++.+....+
T Consensus 525 vdla~~~~~~P 535 (975)
T KOG0112|consen 525 VDLASPPGATP 535 (975)
T ss_pred cccccCCCCCh
Confidence 88887654443
No 124
>KOG2068|consensus
Probab=96.39 E-value=0.001 Score=46.01 Aligned_cols=78 Identities=28% Similarity=0.468 Sum_probs=59.1
Q ss_pred CeEEEcCCCCCCCHHHH---HHHhhhcCCeeEEEEEeCCC----CCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEE
Q psy13066 17 RKVFIGGLDYRTTDESL---QAFFEQWGEIVDVVVMKDPI----TKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (115)
Q Consensus 17 ~~l~v~~lp~~~~~~~l---~~~f~~~G~i~~~~~~~~~~----~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~ 88 (115)
.-+||-+|+....++++ ...|.+||.|.++....++. .+... -+||.|...+++..|+.. ++..++|+.++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 45788899988766544 45788899999988776551 22222 279999999999999988 88889999887
Q ss_pred EEeccCC
Q psy13066 89 TKRAVPR 95 (115)
Q Consensus 89 v~~a~~~ 95 (115)
..+...+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 7766654
No 125
>KOG0128|consensus
Probab=96.38 E-value=0.00016 Score=55.21 Aligned_cols=63 Identities=25% Similarity=0.398 Sum_probs=54.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcC
Q psy13066 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNR 78 (115)
Q Consensus 16 ~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~ 78 (115)
..++|+++|+..+++.++...|..+|.+..+.+......+..+|+||++|...+++.+|+...
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~ 729 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR 729 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh
Confidence 357899999999999999999999998877665544457889999999999999999999874
No 126
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.16 E-value=0.01 Score=38.00 Aligned_cols=69 Identities=12% Similarity=0.019 Sum_probs=41.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhh-cCCe---eEEEEEeCCCCC--CcccEEEEEEcCHHHHHHHHhc-CCCee
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQ-WGEI---VDVVVMKDPITK--RSRGFGFITYSEAKMVDDAMSN-RPHNI 82 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~-~G~i---~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~al~~-~~~~i 82 (115)
.....|.|++||+.+|++++...+.. +++- ..+.-.....+- ....-||+.|.+.+++...... +|..+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 34568999999999999998886665 5544 333322222121 2234589999999998888877 66554
No 127
>KOG2202|consensus
Probab=96.07 E-value=0.0033 Score=42.11 Aligned_cols=59 Identities=15% Similarity=0.307 Sum_probs=46.4
Q ss_pred HHHHhh-hcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEec
Q psy13066 33 LQAFFE-QWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (115)
Q Consensus 33 l~~~f~-~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a 92 (115)
+...+. +||.|..+.+-.+. .....|-+||.|...++|++|+.. ++-.+.|++|....+
T Consensus 85 ~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 85 VFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 333344 88999888654443 456688899999999999999998 889999999987654
No 128
>KOG4285|consensus
Probab=96.06 E-value=0.11 Score=35.90 Aligned_cols=78 Identities=23% Similarity=0.252 Sum_probs=57.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEE-EEEecc
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVV-ETKRAV 93 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i-~v~~a~ 93 (115)
....+-|-++|+.-. .-+...|.++|.|.+.... .+| .+-+|.|.+.-+|++||..++..|+|..+ -|..+.
T Consensus 196 ~D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~---~ng---NwMhirYssr~~A~KALskng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 196 ADTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP---SNG---NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred ccceEEEeccCccch-hHHHHHHHhhCeeeeeecC---CCC---ceEEEEecchhHHHHhhhhcCeeeccceEEeeeecC
Confidence 366777778888765 4567789999988765422 123 48899999999999999999998988754 476666
Q ss_pred CCcccc
Q psy13066 94 PRDVRL 99 (115)
Q Consensus 94 ~~~~~~ 99 (115)
.+...+
T Consensus 269 Dksvi~ 274 (350)
T KOG4285|consen 269 DKSVIN 274 (350)
T ss_pred CHHHhc
Confidence 554443
No 129
>KOG2416|consensus
Probab=95.91 E-value=0.015 Score=43.41 Aligned_cols=77 Identities=10% Similarity=0.135 Sum_probs=58.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhc-CCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCee---CCe
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQW-GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI---DGR 85 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~-G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i---~g~ 85 (115)
........|+|.||-.-.|..+|+.++..- |.|... +. .+.+.+|||.|.+.++|-....+ ++... +++
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--Wm----DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK 512 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WM----DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPK 512 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHH--HH----HHhhcceeEecccHHHHHHHHHHHhccccCCCCCc
Confidence 356667899999999999999999999954 455554 22 23567999999999999888877 55543 666
Q ss_pred EEEEEecc
Q psy13066 86 VVETKRAV 93 (115)
Q Consensus 86 ~i~v~~a~ 93 (115)
.|.+.|..
T Consensus 513 ~L~adf~~ 520 (718)
T KOG2416|consen 513 HLIADFVR 520 (718)
T ss_pred eeEeeecc
Confidence 77777664
No 130
>KOG0112|consensus
Probab=95.71 E-value=0.0036 Score=48.48 Aligned_cols=84 Identities=18% Similarity=0.316 Sum_probs=63.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEE
Q psy13066 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (115)
Q Consensus 10 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~ 88 (115)
..+.....+||++||+..+++.+|+..|..+|.+.+|.+...+ -+...-|+|+.|.+...+..|+.. .+..|....++
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r 444 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHR 444 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccc
Confidence 3445567899999999999999999999999999999887663 233445899999988888888765 44445433455
Q ss_pred EEeccC
Q psy13066 89 TKRAVP 94 (115)
Q Consensus 89 v~~a~~ 94 (115)
+.+..+
T Consensus 445 ~glG~~ 450 (975)
T KOG0112|consen 445 IGLGQP 450 (975)
T ss_pred cccccc
Confidence 555443
No 131
>KOG1996|consensus
Probab=95.70 E-value=0.082 Score=36.50 Aligned_cols=62 Identities=16% Similarity=0.328 Sum_probs=49.2
Q ss_pred HHHHHHHhhhcCCeeEEEEEeCCCCCCcccE-EEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEe
Q psy13066 30 DESLQAFFEQWGEIVDVVVMKDPITKRSRGF-GFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (115)
Q Consensus 30 ~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~ 91 (115)
++++.+...+||.+..+.+...+........ -||+|...+++-+|+.. +|.+++|+.+...+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 4567888899999999887776644444334 69999999999999888 89999999887654
No 132
>KOG0115|consensus
Probab=95.59 E-value=0.019 Score=38.62 Aligned_cols=73 Identities=18% Similarity=0.310 Sum_probs=57.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-C----CCeeCCeEEEEE
Q psy13066 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R----PHNIDGRVVETK 90 (115)
Q Consensus 17 ~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~----~~~i~g~~i~v~ 90 (115)
..|||.||+..++-+.+...|+.||++....+..|- .++..+-++|.|...-.+..|+.. . +....++..-|.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 579999999999999999999999999876555553 577888899999988888888766 2 334455555554
No 133
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.11 E-value=0.24 Score=30.79 Aligned_cols=74 Identities=12% Similarity=0.174 Sum_probs=53.5
Q ss_pred CCCCCeEEEcCCCCCCCH----HHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEE
Q psy13066 13 PESLRKVFIGGLDYRTTD----ESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVE 88 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~----~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~ 88 (115)
+.+-.+|.|.=|..++.. ..+...++.||+|..+.+ . ++.-|.|.|.+..+|=.|+.+-+....|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~-----c--GrqsavVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL-----C--GRQSAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee-----c--CCceEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 444567888877666642 345666788999998754 2 34679999999999999988833466788888
Q ss_pred EEecc
Q psy13066 89 TKRAV 93 (115)
Q Consensus 89 v~~a~ 93 (115)
++|-.
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 87754
No 134
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.77 E-value=0.46 Score=28.15 Aligned_cols=66 Identities=12% Similarity=0.189 Sum_probs=43.4
Q ss_pred CeEEEcCCCCCCC-HHHHHHHhhhc-CCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCC
Q psy13066 17 RKVFIGGLDYRTT-DESLQAFFEQW-GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG 84 (115)
Q Consensus 17 ~~l~v~~lp~~~~-~~~l~~~f~~~-G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g 84 (115)
..+.+=..|+.++ .++|..+...+ ..|..++++++. ...+-.+.+.|.+...|...... ||..++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 4444445566555 45565554544 366678888873 22445689999999999998877 7766543
No 135
>KOG2135|consensus
Probab=94.58 E-value=0.031 Score=40.74 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=56.5
Q ss_pred eEEEcCCCCCC-CHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEeccCC
Q psy13066 18 KVFIGGLDYRT-TDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPR 95 (115)
Q Consensus 18 ~l~v~~lp~~~-~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~a~~~ 95 (115)
.+-+.-.|+.+ +.++|...|.+||.|..+.+-.. -..|.|+|.+..+|-.|-...+..|+++.|+|.|-.+-
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEEEEecCC
Confidence 34444455555 45789999999999998876544 24688999999998777777889999999999998773
No 136
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.36 E-value=0.72 Score=29.86 Aligned_cols=61 Identities=11% Similarity=0.137 Sum_probs=42.3
Q ss_pred HHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-C--CCeeCCeEEEEEeccCCc
Q psy13066 30 DESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R--PHNIDGRVVETKRAVPRD 96 (115)
Q Consensus 30 ~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~--~~~i~g~~i~v~~a~~~~ 96 (115)
...|+.+|..++.+..+.....- +=..|.|.+.+.|.+|... + +..+.|..+++.++.+..
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred HHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 46789999999988877655442 3467899999999999888 6 788999999999886543
No 137
>KOG4210|consensus
Probab=93.34 E-value=0.075 Score=36.65 Aligned_cols=79 Identities=18% Similarity=0.133 Sum_probs=61.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCC-CeeCCeEEEEEecc
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRP-HNIDGRVVETKRAV 93 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~-~~i~g~~i~v~~a~ 93 (115)
..++.|++++...+.+.+...++..+|................+|++++.|...+.+..|+...+ ..+.+..+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 57789999999999888888888888866666555544577889999999999999999998843 45666665544433
No 138
>KOG4483|consensus
Probab=93.24 E-value=0.7 Score=33.43 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=52.3
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcC-CeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc
Q psy13066 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWG-EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (115)
Q Consensus 7 ~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~ 77 (115)
+....+++=...|-|-++|...-.+||...|..|+ ...+|.|+-+. ++|..|.+...|..||..
T Consensus 382 ~~ll~e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 382 PPLLRESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred CCCCCcccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 34444555667888999999999999999999997 55688888774 899999999999999866
No 139
>KOG0804|consensus
Probab=92.20 E-value=1.3 Score=32.57 Aligned_cols=68 Identities=15% Similarity=0.226 Sum_probs=53.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcC-CeeEEEEEeCCCCCCcccE-EEEEEcCHHHHHHHHhc-CCCeeC
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWG-EIVDVVVMKDPITKRSRGF-GFITYSEAKMVDDAMSN-RPHNID 83 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~al~~-~~~~i~ 83 (115)
+.+.+.|.|=.+|-.++-.|+..|...+- .|..++++++ |.+..| ..+.|.+..+|...-.. ||..++
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd---~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRD---GMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeec---CCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 33377888989999999999999988663 7778899985 444445 79999999999998877 666553
No 140
>KOG4660|consensus
Probab=92.00 E-value=0.42 Score=35.65 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=40.9
Q ss_pred cCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCe---e-CCeEEEEEeccCCc
Q psy13066 40 WGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHN---I-DGRVVETKRAVPRD 96 (115)
Q Consensus 40 ~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~---i-~g~~i~v~~a~~~~ 96 (115)
.|.-..+.++.|-.+....|||||.|.+++++..+.++ +|.. + ..+.+.+.||.-+.
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQG 474 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQG 474 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhc
Confidence 34445666777766777889999999999999998888 6543 3 34455777776443
No 141
>KOG2253|consensus
Probab=90.44 E-value=0.22 Score=37.80 Aligned_cols=69 Identities=19% Similarity=0.207 Sum_probs=55.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEE
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~ 90 (115)
-.+.-++||+++...+.++.+...+...|.+..+... .|+|..|.......+|+.. ....++|..+.+.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~---------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD---------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh---------hhcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 3345689999999999999999999999987765322 2899999999999999888 6777888876654
No 142
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.54 E-value=2.2 Score=23.16 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHhhhcCCe-----eEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEec
Q psy13066 25 DYRTTDESLQAFFEQWGEI-----VDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (115)
Q Consensus 25 p~~~~~~~l~~~f~~~G~i-----~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a 92 (115)
-..++..+|..++...+.+ -.+.+.. .|+|++.... .+..++.. ++..+.|+.+.|..|
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3456778888888876533 3555432 3888888764 56667777 888999999998754
No 143
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=89.33 E-value=1.2 Score=24.11 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=43.6
Q ss_pred HHHHHHhhhcC-CeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEecc
Q psy13066 31 ESLQAFFEQWG-EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAV 93 (115)
Q Consensus 31 ~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~a~ 93 (115)
++|++.|...| ++..++-+..+.++.+...-+|+.....+....+ +-..++|+.+.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~Il--~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEIL--NIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcceE--eehhhCCeeEEEecCc
Confidence 46888899888 7778888888877877778888887654433322 3345788888876543
No 144
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=87.78 E-value=2 Score=23.11 Aligned_cols=62 Identities=15% Similarity=0.220 Sum_probs=43.2
Q ss_pred HHHHHHhhhcC-CeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEeccC
Q psy13066 31 ESLQAFFEQWG-EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (115)
Q Consensus 31 ~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~a~~ 94 (115)
++|.+.|...| .+..+.-+..+.++.....-||+.....+...++ +-..++|..++|.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~--~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY--KIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee--ehHhhCCeEEEEecCCC
Confidence 56788888887 7778877777767777778888887655433332 33457888888876544
No 145
>KOG4676|consensus
Probab=85.99 E-value=0.079 Score=37.93 Aligned_cols=64 Identities=13% Similarity=0.034 Sum_probs=51.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeC
Q psy13066 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNID 83 (115)
Q Consensus 16 ~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~ 83 (115)
.++++|++|+..+...++...|..+|.+...++-. +--..+|-+.|....+...|+..++.++.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHHhcchhhh
Confidence 36899999999999999999999999988766533 33345777999998888889888766654
No 146
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=85.59 E-value=4 Score=21.87 Aligned_cols=53 Identities=11% Similarity=0.087 Sum_probs=38.0
Q ss_pred CCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEE
Q psy13066 27 RTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (115)
Q Consensus 27 ~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~ 88 (115)
.++-++++..|..|+- .++. .++ + .=||.|.+..+|++|... ++..+.+..+.
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~--~d~-t-----GfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIR--DDR-T-----GFYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEE--ecC-C-----EEEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 3567899999999953 3332 332 2 358999999999999988 77766655544
No 147
>KOG4410|consensus
Probab=82.49 E-value=5.7 Score=27.69 Aligned_cols=47 Identities=9% Similarity=0.073 Sum_probs=36.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCee-EEEEEeCCCCCCcccEEEEEEcCH
Q psy13066 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIV-DVVVMKDPITKRSRGFGFITYSEA 68 (115)
Q Consensus 16 ~~~l~v~~lp~~~~~~~l~~~f~~~G~i~-~~~~~~~~~~~~~~g~~fv~f~~~ 68 (115)
.+-++++||+.++.-.+|+..+..-|... ++.|. | +.|-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk-----g-~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK-----G-HFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee-----c-CCcceeEecCCc
Confidence 45799999999999999999999987543 33331 2 457799999764
No 148
>KOG2591|consensus
Probab=82.32 E-value=6.3 Score=29.98 Aligned_cols=69 Identities=13% Similarity=0.161 Sum_probs=50.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhc--CCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcC---CCeeCCeEE
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQW--GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNR---PHNIDGRVV 87 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~--G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~---~~~i~g~~i 87 (115)
-.+.+.+.++.||..+..++++.+|..- -....+.+-.+. -=||.|.+..+|..|.+.. ..+|-|+.|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 3456788899999999999999999863 244455544331 2489999999999998762 445677766
Q ss_pred E
Q psy13066 88 E 88 (115)
Q Consensus 88 ~ 88 (115)
.
T Consensus 245 m 245 (684)
T KOG2591|consen 245 M 245 (684)
T ss_pred h
Confidence 4
No 149
>KOG4574|consensus
Probab=79.14 E-value=1.8 Score=34.29 Aligned_cols=73 Identities=12% Similarity=0.201 Sum_probs=55.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCe--eCCeEEEEEeccCC
Q psy13066 19 VFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHN--IDGRVVETKRAVPR 95 (115)
Q Consensus 19 l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~--i~g~~i~v~~a~~~ 95 (115)
.++.|.+-..+...|..++..||.+...+..++- ..|.|+|.+.+.|-.|+.+ +|.+ ..|-+.+|..|..-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 4455556677888899999999999988766653 4789999999999988888 6654 46777888887754
Q ss_pred cc
Q psy13066 96 DV 97 (115)
Q Consensus 96 ~~ 97 (115)
.-
T Consensus 375 ~~ 376 (1007)
T KOG4574|consen 375 PM 376 (1007)
T ss_pred cc
Confidence 43
No 150
>KOG2318|consensus
Probab=73.15 E-value=36 Score=26.25 Aligned_cols=75 Identities=9% Similarity=0.233 Sum_probs=53.7
Q ss_pred CCCCCCCeEEEcCCCCC-CCHHHHHHHhhhc----CCeeEEEEEeCCC----------CCC-------------------
Q psy13066 11 TEPESLRKVFIGGLDYR-TTDESLQAFFEQW----GEIVDVVVMKDPI----------TKR------------------- 56 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~-~~~~~l~~~f~~~----G~i~~~~~~~~~~----------~~~------------------- 56 (115)
.-....++|-|.|+.|. +...+|..+|.+| |.|.+|.|..... .|.
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~e 248 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDE 248 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchh
Confidence 34667789999999998 4678999998877 5888887643321 111
Q ss_pred ------------------cccEEEEEEcCHHHHHHHHhc-CCCeeCCe
Q psy13066 57 ------------------SRGFGFITYSEAKMVDDAMSN-RPHNIDGR 85 (115)
Q Consensus 57 ------------------~~g~~fv~f~~~~~a~~al~~-~~~~i~g~ 85 (115)
..-||-|+|.+...|...-.. .|+++...
T Consensus 249 e~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 249 EEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred hhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 123688999999999888777 67777433
No 151
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=71.10 E-value=15 Score=20.91 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=19.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHH
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQA 35 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~ 35 (115)
..+.+++-++|||....+++++.
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D 71 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRD 71 (88)
T ss_pred cccCCEEEEeCCCCCCChhhhee
Confidence 34577999999999999998873
No 152
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=70.49 E-value=14 Score=19.55 Aligned_cols=18 Identities=39% Similarity=0.667 Sum_probs=14.9
Q ss_pred HHHHHHhhhcCCeeEEEE
Q psy13066 31 ESLQAFFEQWGEIVDVVV 48 (115)
Q Consensus 31 ~~l~~~f~~~G~i~~~~~ 48 (115)
.+|+.+|+..|+|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999886654
No 153
>KOG4019|consensus
Probab=69.26 E-value=4.1 Score=26.39 Aligned_cols=75 Identities=15% Similarity=0.145 Sum_probs=50.1
Q ss_pred CCCeEEEcCCCCCCCH-----HHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCe-EE
Q psy13066 15 SLRKVFIGGLDYRTTD-----ESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR-VV 87 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~-----~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~-~i 87 (115)
-..++.+++++..+.. .....+|.++.+.....+.+ +.+...|.|.+.+.+.+|... +...+.|+ .+
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 3456778888876532 23456666665544333322 235567899999999999877 78888888 77
Q ss_pred EEEeccCC
Q psy13066 88 ETKRAVPR 95 (115)
Q Consensus 88 ~v~~a~~~ 95 (115)
+.-++++.
T Consensus 83 k~yfaQ~~ 90 (193)
T KOG4019|consen 83 KLYFAQPG 90 (193)
T ss_pred EEEEccCC
Confidence 77776654
No 154
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=68.08 E-value=21 Score=25.05 Aligned_cols=78 Identities=10% Similarity=0.160 Sum_probs=55.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCC-------CCCCcccEEEEEEcCHHHHHHHHhc-------CC
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDP-------ITKRSRGFGFITYSEAKMVDDAMSN-------RP 79 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~-------~~~~~~g~~fv~f~~~~~a~~al~~-------~~ 79 (115)
=..+.|.+.|+..+++-..+..-|-+||+|+.+.++.+. ...+......+.|-+.+.|...--. -.
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 345678889999999888888889999999999988764 1234456778999988887665322 13
Q ss_pred CeeCCeEEEEEe
Q psy13066 80 HNIDGRVVETKR 91 (115)
Q Consensus 80 ~~i~g~~i~v~~ 91 (115)
..+....+.+.+
T Consensus 93 ~~L~S~~L~lsF 104 (309)
T PF10567_consen 93 TKLKSESLTLSF 104 (309)
T ss_pred HhcCCcceeEEE
Confidence 345666666544
No 155
>KOG4454|consensus
Probab=63.18 E-value=1.4 Score=29.45 Aligned_cols=64 Identities=38% Similarity=0.480 Sum_probs=50.7
Q ss_pred CCCCCeEEEcC----CCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc
Q psy13066 13 PESLRKVFIGG----LDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (115)
Q Consensus 13 ~~~~~~l~v~~----lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~ 77 (115)
++...+++.|+ |....+++.+...|++.|++..+++.++. .|..+.++|+.+.-......++..
T Consensus 77 ~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~ 144 (267)
T KOG4454|consen 77 DEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDL 144 (267)
T ss_pred chhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhh
Confidence 34456778887 77788999999999999999999888886 577888999888777666666654
No 156
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=59.27 E-value=24 Score=20.43 Aligned_cols=50 Identities=22% Similarity=0.274 Sum_probs=33.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCH
Q psy13066 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEA 68 (115)
Q Consensus 16 ~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~ 68 (115)
..-+||++++..+.+.-...+-+.+++..-+-+..+ +.. .||.|-.+...
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~--~~e-qG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT--NTE-SGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC--CCC-CCcEEEecCCC
Confidence 346999999988888766666666665444444443 233 38999888764
No 157
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=57.52 E-value=33 Score=19.37 Aligned_cols=49 Identities=24% Similarity=0.398 Sum_probs=34.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcC
Q psy13066 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSE 67 (115)
Q Consensus 16 ~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~ 67 (115)
..-+||++++..+.+.-...+....++..-+-+..++ + ..||+|-.+.+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~-n--eqG~~~~t~G~ 73 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN-N--EQGFDFRTLGD 73 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC-C--CCCEEEEEeCC
Confidence 3469999999999888777777766555555444443 2 66899887743
No 158
>KOG0156|consensus
Probab=53.88 E-value=33 Score=25.73 Aligned_cols=60 Identities=12% Similarity=0.202 Sum_probs=45.2
Q ss_pred EEEcCCCCCCC---HHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEE
Q psy13066 19 VFIGGLDYRTT---DESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVV 87 (115)
Q Consensus 19 l~v~~lp~~~~---~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i 87 (115)
=.||||+.-.. ...+.++-.+||++..+++-.. -.|...+.+.|+.++..++..+.+|..
T Consensus 35 PiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 35 PIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred CccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHhCCccccCCCC
Confidence 34788876544 3556666679999998876332 357888999999999998888888875
No 159
>KOG2891|consensus
Probab=53.41 E-value=28 Score=24.38 Aligned_cols=37 Identities=24% Similarity=0.487 Sum_probs=28.6
Q ss_pred CCCCCCeEEEcCCCCCC------------CHHHHHHHhhhcCCeeEEEE
Q psy13066 12 EPESLRKVFIGGLDYRT------------TDESLQAFFEQWGEIVDVVV 48 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~------------~~~~l~~~f~~~G~i~~~~~ 48 (115)
+...+-++++.+||..| +++-|+..|..||.|..+.+
T Consensus 145 pgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdi 193 (445)
T KOG2891|consen 145 PGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDI 193 (445)
T ss_pred CCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCC
Confidence 34556689999998643 46679999999999988765
No 160
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=52.61 E-value=33 Score=22.18 Aligned_cols=42 Identities=24% Similarity=0.436 Sum_probs=33.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCC
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDP 52 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~ 52 (115)
........+++.+++..++...+...|..+|.+....+....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 220 LLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred ccccccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 334556789999999999999999999999998666655544
No 161
>KOG4008|consensus
Probab=46.41 E-value=28 Score=23.66 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=26.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCee
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIV 44 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~ 44 (115)
....++|+-|+|..++++.+..+.++.|-+.
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq 68 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQ 68 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhh
Confidence 3456899999999999999999999887433
No 162
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=46.21 E-value=23 Score=16.37 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=14.3
Q ss_pred CCCHHHHHHHhhhcCCe
Q psy13066 27 RTTDESLQAFFEQWGEI 43 (115)
Q Consensus 27 ~~~~~~l~~~f~~~G~i 43 (115)
.+++++|+..+..+|-.
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 57899999999999843
No 163
>PF14893 PNMA: PNMA
Probab=43.85 E-value=21 Score=25.44 Aligned_cols=25 Identities=8% Similarity=0.259 Sum_probs=21.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhh
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQ 39 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~ 39 (115)
..+.+.|.+||.++++++|++.+..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHH
Confidence 4567999999999999998888764
No 164
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=42.62 E-value=73 Score=18.96 Aligned_cols=47 Identities=15% Similarity=0.287 Sum_probs=27.1
Q ss_pred CCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEc-CHHHHHHHHhc
Q psy13066 28 TTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYS-EAKMVDDAMSN 77 (115)
Q Consensus 28 ~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~-~~~~a~~al~~ 77 (115)
.+.+.|...|..|.++. +....++ ....|++.|.|. +-.....|+..
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHHH
Confidence 35578999999998765 4444543 246789999997 55555666544
No 165
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=41.81 E-value=42 Score=15.99 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=18.6
Q ss_pred cCHHHHHHHHhcCCCeeCCeEEE
Q psy13066 66 SEAKMVDDAMSNRPHNIDGRVVE 88 (115)
Q Consensus 66 ~~~~~a~~al~~~~~~i~g~~i~ 88 (115)
.+...|.+.+......++|+.+.
T Consensus 14 ~sr~~a~~~I~~g~V~VNg~~v~ 36 (48)
T PF01479_consen 14 SSRSEARRLIKQGRVKVNGKVVK 36 (48)
T ss_dssp SSHHHHHHHHHTTTEEETTEEES
T ss_pred CCHHHHHHhcCCCEEEECCEEEc
Confidence 46788899998888899998754
No 166
>PHA01632 hypothetical protein
Probab=41.01 E-value=40 Score=17.44 Aligned_cols=22 Identities=18% Similarity=0.378 Sum_probs=17.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhhc
Q psy13066 19 VFIGGLDYRTTDESLQAFFEQW 40 (115)
Q Consensus 19 l~v~~lp~~~~~~~l~~~f~~~ 40 (115)
+.|..+|..-|+++|+.++.+.
T Consensus 19 ilieqvp~kpteeelrkvlpki 40 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPKI 40 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHHH
Confidence 3455889999999999888653
No 167
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=38.57 E-value=44 Score=23.21 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=23.1
Q ss_pred EEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEeccCCc
Q psy13066 61 GFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPRD 96 (115)
Q Consensus 61 ~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~~~~ 96 (115)
|||.|++..+|+.|++. ... +++.+.+..|-...
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~--~~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK--RPNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC--CCCCceEeeCCCcc
Confidence 79999999999999876 222 23445666555433
No 168
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=36.81 E-value=11 Score=27.54 Aligned_cols=64 Identities=16% Similarity=0.230 Sum_probs=46.8
Q ss_pred CCCCCeEEEcCCCCCCCHH--------HHHHHhhh--cCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHh
Q psy13066 13 PESLRKVFIGGLDYRTTDE--------SLQAFFEQ--WGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~--------~l~~~f~~--~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~ 76 (115)
....+.+|+.++......+ ++..+|.. .+.+..+...++-.+...+|..|++|+..+.+.+...
T Consensus 171 ~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 171 SQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3445567777776655443 88888988 5566666666665567788899999999999998873
No 169
>KOG1295|consensus
Probab=36.24 E-value=72 Score=23.25 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=40.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCC-eeEEEEEeCCCCC--CcccEEEEEEcCHHHHHHHHhc
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGE-IVDVVVMKDPITK--RSRGFGFITYSEAKMVDDAMSN 77 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~al~~ 77 (115)
.....+.|.+||+..++.++.+....+-. +....+.....+- ...+.+||.|...++.......
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~ 71 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRR 71 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhh
Confidence 34557889999999999998887777531 1111222111111 1245689999999886665544
No 170
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=34.95 E-value=83 Score=17.37 Aligned_cols=22 Identities=14% Similarity=0.348 Sum_probs=20.1
Q ss_pred CcccEEEEEEcCHHHHHHHHhc
Q psy13066 56 RSRGFGFITYSEAKMVDDAMSN 77 (115)
Q Consensus 56 ~~~g~~fv~f~~~~~a~~al~~ 77 (115)
..+||-||+=.+..++..|+..
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~g 63 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRG 63 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT
T ss_pred CCceEEEEEeCCHHHHHHHHhc
Confidence 4789999999999999999977
No 171
>KOG2295|consensus
Probab=34.06 E-value=4.3 Score=30.77 Aligned_cols=68 Identities=4% Similarity=0.023 Sum_probs=45.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCee
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI 82 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i 82 (115)
..+++++.++++.++-++|...+..+-....+.+..............+.|+---....|+.+ +++.+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl 298 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRL 298 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccc
Confidence 456889999999999999999999885555554443332344456677888755555555544 44444
No 172
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=32.76 E-value=16 Score=19.65 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=17.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhh
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFE 38 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~ 38 (115)
...+.+|+|.+|..|-++.=..++.
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~k 49 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWYK 49 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHHH
Confidence 4567999999999987665444443
No 173
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=31.42 E-value=43 Score=15.65 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=10.0
Q ss_pred CCCCHHHHHHHhhhcC
Q psy13066 26 YRTTDESLQAFFEQWG 41 (115)
Q Consensus 26 ~~~~~~~l~~~f~~~G 41 (115)
.++++++|+..|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3578889999998764
No 174
>PF15063 TC1: Thyroid cancer protein 1
Probab=29.15 E-value=43 Score=18.50 Aligned_cols=28 Identities=21% Similarity=0.225 Sum_probs=22.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCee
Q psy13066 17 RKVFIGGLDYRTTDESLQAFFEQWGEIV 44 (115)
Q Consensus 17 ~~l~v~~lp~~~~~~~l~~~f~~~G~i~ 44 (115)
+.--+.||-.++....|+.+|..-|+..
T Consensus 26 RKkasaNIFe~vn~~qlqrLF~~sGD~k 53 (79)
T PF15063_consen 26 RKKASANIFENVNLDQLQRLFQKSGDKK 53 (79)
T ss_pred hhhhhhhhhhccCHHHHHHHHHHccchh
Confidence 3444668888999999999999999653
No 175
>KOG0226|consensus
Probab=29.03 E-value=45 Score=23.03 Aligned_cols=79 Identities=14% Similarity=0.221 Sum_probs=49.6
Q ss_pred CCCCeEEEcCCCCCCCHHH---HHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEE
Q psy13066 14 ESLRKVFIGGLDYRTTDES---LQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~---l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v 89 (115)
......+++++-..+..+- +...|..+-.+....+++++ -+...+++|+.|........+... ++..+.-..++.
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~ 172 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL 172 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceee
Confidence 3344555555544443332 25566666666666677765 677889999999987777766655 566666666665
Q ss_pred Eecc
Q psy13066 90 KRAV 93 (115)
Q Consensus 90 ~~a~ 93 (115)
...+
T Consensus 173 a~gt 176 (290)
T KOG0226|consen 173 AAGT 176 (290)
T ss_pred cccc
Confidence 5443
No 176
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=28.52 E-value=2.2e+02 Score=22.31 Aligned_cols=59 Identities=12% Similarity=0.342 Sum_probs=36.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEc--CHHHHHHHHhc
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYS--EAKMVDDAMSN 77 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~--~~~~a~~al~~ 77 (115)
.+......+|+.+|+.++.++-=.++....-....+.+.+. ||| |+|. ++.+....++.
T Consensus 296 PEGl~~~evY~nGlSTSlP~dVQ~~~irsipGlEna~i~rp-------gYA-IEYD~v~p~qL~~tLEt 356 (621)
T COG0445 296 PEGLDTDEVYPNGLSTSLPEDVQEQIIRSIPGLENAEILRP-------GYA-IEYDYVDPRQLKPTLET 356 (621)
T ss_pred CCCCCCceEecCcccccCCHHHHHHHHHhCcccccceeecc-------cee-eeecccChhhcccchhh
Confidence 44556678999999999988766666666655566665543 455 3443 44444444443
No 177
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=28.08 E-value=1.2e+02 Score=18.25 Aligned_cols=34 Identities=29% Similarity=0.186 Sum_probs=25.4
Q ss_pred CCeEEEcCCCCC-CCHHHHHHHhhhcCCeeEEEEE
Q psy13066 16 LRKVFIGGLDYR-TTDESLQAFFEQWGEIVDVVVM 49 (115)
Q Consensus 16 ~~~l~v~~lp~~-~~~~~l~~~f~~~G~i~~~~~~ 49 (115)
...+.+.+||.. ++++-+..+-+..|.+..+...
T Consensus 104 ~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 104 PVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred chhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 334556699998 5677788888899988877643
No 178
>KOG4213|consensus
Probab=23.91 E-value=1.4e+02 Score=19.58 Aligned_cols=36 Identities=14% Similarity=0.096 Sum_probs=25.8
Q ss_pred CCeeEEEEEeCCCCC--CcccEEEEEEcCHHHHHHHHhc
Q psy13066 41 GEIVDVVVMKDPITK--RSRGFGFITYSEAKMVDDAMSN 77 (115)
Q Consensus 41 G~i~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~al~~ 77 (115)
|.+..+...... .+ ..+|-.|+.|.+.+.+.+++..
T Consensus 132 ~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 132 GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhh
Confidence 566666554432 23 4578899999999999987765
No 179
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=21.57 E-value=1.4e+02 Score=15.97 Aligned_cols=31 Identities=16% Similarity=0.383 Sum_probs=19.0
Q ss_pred HHHHHHHhhhcCCeeEEEEEeCCCCCCcccE
Q psy13066 30 DESLQAFFEQWGEIVDVVVMKDPITKRSRGF 60 (115)
Q Consensus 30 ~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~ 60 (115)
+.+|++.|-+--.+.++.+...+.-+++.||
T Consensus 32 e~eler~fl~~P~v~e~~l~EKKri~~G~gy 62 (64)
T PF13046_consen 32 EVELERHFLPLPEVKEVALYEKKRIRKGAGY 62 (64)
T ss_pred HHHhhhhccCCCCceEEEEEEEEeeeCCcee
Confidence 4456777766667888877766534443333
No 180
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=21.45 E-value=1.1e+02 Score=16.27 Aligned_cols=19 Identities=16% Similarity=0.134 Sum_probs=15.3
Q ss_pred cEEEEEEcCHHHHHHHHhc
Q psy13066 59 GFGFITYSEAKMVDDAMSN 77 (115)
Q Consensus 59 g~~fv~f~~~~~a~~al~~ 77 (115)
.+.++.|.+..+|.+|-..
T Consensus 2 ~~~~i~F~st~~a~~~ek~ 20 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKL 20 (73)
T ss_pred ceEEEEECCHHHHHHHHHH
Confidence 3678999999998888655
No 181
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=20.32 E-value=47 Score=16.91 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=17.2
Q ss_pred cccEEEEEEcC-HHHHHHHHhcCCCeeCCeEEEEEecc
Q psy13066 57 SRGFGFITYSE-AKMVDDAMSNRPHNIDGRVVETKRAV 93 (115)
Q Consensus 57 ~~g~~fv~f~~-~~~a~~al~~~~~~i~g~~i~v~~a~ 93 (115)
.+||||+...+ .++.--.-...+.-++|-.+.|....
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 56899999876 11111011112334677777776554
Done!