Query psy13066
Match_columns 115
No_of_seqs 113 out of 1346
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 18:35:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13066.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13066hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 6.5E-24 2.2E-28 123.0 11.4 80 15-94 18-98 (99)
2 2lxi_A RNA-binding protein 10; 99.9 3.9E-24 1.3E-28 122.2 7.0 86 17-102 2-90 (91)
3 3s8s_A Histone-lysine N-methyl 99.9 9.1E-23 3.1E-27 120.2 10.8 88 13-100 3-91 (110)
4 2jrs_A RNA-binding protein 39; 99.9 1.9E-22 6.5E-27 118.5 11.0 92 5-96 15-107 (108)
5 3s7r_A Heterogeneous nuclear r 99.9 3.9E-22 1.3E-26 112.6 11.6 83 10-92 5-87 (87)
6 2dgs_A DAZ-associated protein 99.9 3.8E-22 1.3E-26 115.2 11.4 90 10-99 4-93 (99)
7 2rs2_A Musashi-1, RNA-binding 99.9 2.8E-22 9.6E-27 117.9 10.9 91 9-99 18-108 (109)
8 3md1_A Nuclear and cytoplasmic 99.9 5.8E-22 2E-26 110.9 11.3 80 17-96 2-82 (83)
9 2dgo_A Cytotoxic granule-assoc 99.9 1.2E-21 4.2E-26 115.9 13.0 93 8-100 7-100 (115)
10 2cq0_A Eukaryotic translation 99.9 6.7E-22 2.3E-26 114.9 11.4 91 9-99 8-99 (103)
11 1p27_B RNA-binding protein 8A; 99.9 5.1E-22 1.7E-26 115.9 10.8 87 11-97 18-105 (106)
12 1x4h_A RNA-binding protein 28; 99.9 6.1E-22 2.1E-26 116.4 11.2 92 9-100 8-106 (111)
13 1whw_A Hypothetical protein ri 99.9 7.7E-22 2.6E-26 113.9 11.1 89 12-100 4-93 (99)
14 1x5u_A Splicing factor 3B subu 99.9 8.8E-22 3E-26 114.7 11.4 92 8-99 7-99 (105)
15 3bs9_A Nucleolysin TIA-1 isofo 99.9 8.5E-22 2.9E-26 111.1 11.0 82 14-95 4-86 (87)
16 2cpz_A CUG triplet repeat RNA- 99.9 9E-22 3.1E-26 116.5 11.5 91 10-100 19-110 (115)
17 2do4_A Squamous cell carcinoma 99.9 1.4E-21 4.7E-26 113.0 12.0 88 10-98 11-99 (100)
18 1u6f_A Tcubp1, RNA-binding pro 99.9 9.1E-22 3.1E-26 119.9 11.4 94 10-103 36-130 (139)
19 2dh8_A DAZ-associated protein 99.9 5.1E-22 1.7E-26 115.8 9.8 92 8-99 8-99 (105)
20 2dng_A Eukaryotic translation 99.9 2.8E-21 9.6E-26 112.3 12.5 90 9-99 8-97 (103)
21 2cqb_A Peptidyl-prolyl CIS-tra 99.9 7E-22 2.4E-26 114.6 9.7 92 9-100 5-97 (102)
22 2cqg_A TDP-43, TAR DNA-binding 99.9 3.7E-21 1.3E-25 111.8 12.7 91 9-100 8-98 (103)
23 2dnz_A Probable RNA-binding pr 99.9 1.7E-21 5.9E-26 111.6 11.2 86 14-99 3-89 (95)
24 1oo0_B CG8781-PA, drosophila Y 99.9 1.3E-21 4.3E-26 115.0 10.7 89 9-97 19-108 (110)
25 2dnm_A SRP46 splicing factor; 99.9 8.8E-22 3E-26 114.4 9.9 91 9-99 6-97 (103)
26 2cqc_A Arginine/serine-rich sp 99.9 2.2E-21 7.6E-26 111.0 11.4 87 8-94 7-94 (95)
27 2la6_A RNA-binding protein FUS 99.9 1.9E-21 6.6E-26 112.3 11.0 86 8-93 5-99 (99)
28 2x1f_A MRNA 3'-END-processing 99.9 2E-21 6.8E-26 111.6 11.0 84 16-99 2-86 (96)
29 1x5t_A Splicing factor 3B subu 99.9 1.3E-21 4.4E-26 112.3 10.1 86 14-99 3-90 (96)
30 1x4b_A Heterogeneous nuclear r 99.9 8E-22 2.7E-26 116.9 9.5 87 14-100 25-111 (116)
31 2dgp_A Bruno-like 4, RNA bindi 99.9 1.3E-21 4.4E-26 114.2 10.2 92 8-99 5-100 (106)
32 4f25_A Polyadenylate-binding p 99.9 1.7E-21 5.7E-26 115.5 10.6 83 15-99 4-87 (115)
33 3mdf_A Peptidyl-prolyl CIS-tra 99.9 1.9E-21 6.4E-26 109.3 10.2 81 13-93 4-85 (85)
34 1x5s_A Cold-inducible RNA-bind 99.9 1.6E-21 5.3E-26 113.1 10.1 90 10-99 6-96 (102)
35 2dnh_A Bruno-like 5, RNA bindi 99.9 4.2E-21 1.4E-25 111.8 11.9 88 11-99 10-101 (105)
36 2cpe_A RNA-binding protein EWS 99.9 2E-21 6.9E-26 114.6 10.5 91 9-99 8-107 (113)
37 1wi8_A EIF-4B, eukaryotic tran 99.9 2.8E-21 9.4E-26 112.5 10.9 90 10-100 9-99 (104)
38 2lkz_A RNA-binding protein 5; 99.9 6.1E-22 2.1E-26 113.9 7.9 81 14-94 7-94 (95)
39 3p5t_L Cleavage and polyadenyl 99.9 2.2E-22 7.4E-27 114.5 6.0 82 17-98 2-86 (90)
40 2cqd_A RNA-binding region cont 99.9 6.3E-21 2.2E-25 113.0 12.5 89 9-98 10-99 (116)
41 2kxn_B Transformer-2 protein h 99.9 1.5E-21 5.2E-26 117.9 9.9 89 9-97 39-128 (129)
42 2d9p_A Polyadenylate-binding p 99.9 3.6E-21 1.2E-25 111.8 10.9 90 9-100 8-98 (103)
43 2e5h_A Zinc finger CCHC-type a 99.9 4.1E-21 1.4E-25 109.8 10.9 84 10-93 10-94 (94)
44 3n9u_C Cleavage and polyadenyl 99.9 1.7E-21 5.9E-26 121.1 10.1 83 15-97 54-139 (156)
45 3ucg_A Polyadenylate-binding p 99.9 9.5E-21 3.3E-25 107.2 11.9 82 15-96 5-86 (89)
46 2div_A TRNA selenocysteine ass 99.9 5.4E-21 1.9E-25 110.3 11.0 86 11-96 4-95 (99)
47 1l3k_A Heterogeneous nuclear r 99.9 8.3E-21 2.9E-25 120.9 12.8 106 8-113 5-110 (196)
48 2cph_A RNA binding motif prote 99.9 5.3E-21 1.8E-25 111.7 11.0 92 8-99 7-101 (107)
49 4a8x_A RNA-binding protein wit 99.9 2.8E-21 9.7E-26 109.1 9.3 83 15-97 3-87 (88)
50 2fy1_A RNA-binding motif prote 99.9 5.7E-21 2E-25 113.4 11.0 86 12-98 3-89 (116)
51 1s79_A Lupus LA protein; RRM, 99.9 2.3E-21 7.9E-26 113.0 8.9 82 12-94 7-88 (103)
52 2cq3_A RNA-binding protein 9; 99.9 2.1E-20 7.2E-25 108.6 12.9 90 8-99 7-97 (103)
53 3ex7_B RNA-binding protein 8A; 99.9 3.5E-21 1.2E-25 115.6 9.9 91 9-99 15-106 (126)
54 2dhg_A TRNA selenocysteine ass 99.9 3.8E-21 1.3E-25 111.8 9.6 88 12-100 5-95 (104)
55 2cpf_A RNA binding motif prote 99.9 4.8E-21 1.7E-25 110.3 9.9 86 14-99 3-92 (98)
56 2cqi_A Nucleolysin TIAR; RNA r 99.9 2E-20 6.8E-25 108.7 12.6 89 9-99 8-97 (103)
57 2khc_A Testis-specific RNP-typ 99.9 6.8E-21 2.3E-25 113.1 10.6 84 10-93 34-118 (118)
58 1p1t_A Cleavage stimulation fa 99.9 7E-22 2.4E-26 114.9 6.2 89 12-100 4-93 (104)
59 3ns6_A Eukaryotic translation 99.9 4.1E-22 1.4E-26 115.5 5.1 85 13-97 3-95 (100)
60 2j76_E EIF-4B, EIF4B, eukaryot 99.9 1.2E-21 4.2E-26 113.4 6.7 88 8-96 11-99 (100)
61 2ywk_A Putative RNA-binding pr 99.9 1.4E-20 4.9E-25 107.7 10.9 85 9-94 9-94 (95)
62 1h2v_Z 20 kDa nuclear CAP bind 99.9 2.2E-20 7.6E-25 115.9 12.6 87 13-99 36-123 (156)
63 2cq4_A RNA binding motif prote 99.9 1.5E-21 5.3E-26 115.3 6.8 85 14-98 23-107 (114)
64 2kn4_A Immunoglobulin G-bindin 99.9 1.6E-20 5.4E-25 116.6 11.7 89 11-99 65-154 (158)
65 2dgw_A Probable RNA-binding pr 99.9 2.8E-20 9.5E-25 105.8 11.7 86 10-97 4-89 (91)
66 3ulh_A THO complex subunit 4; 99.8 2.3E-20 7.9E-25 109.0 11.6 83 10-93 23-106 (107)
67 2m2b_A RNA-binding protein 10; 99.8 1.5E-21 5.1E-26 118.1 6.6 90 8-98 15-111 (131)
68 2xs2_A Deleted in azoospermia- 99.8 4.4E-21 1.5E-25 111.3 8.3 87 10-98 3-89 (102)
69 2cpy_A RNA-binding protein 12; 99.8 4E-21 1.4E-25 113.7 7.8 85 12-97 11-96 (114)
70 1wg5_A Heterogeneous nuclear r 99.8 1.5E-20 5.1E-25 109.6 10.2 87 10-97 9-96 (104)
71 2do0_A HnRNP M, heterogeneous 99.8 5.6E-20 1.9E-24 108.5 12.6 88 10-98 9-97 (114)
72 2cqp_A RNA-binding protein 12; 99.8 8.4E-21 2.9E-25 109.3 8.8 85 12-96 11-96 (98)
73 2dgv_A HnRNP M, heterogeneous 99.8 2.3E-20 8E-25 106.2 10.5 85 12-98 4-89 (92)
74 2mss_A Protein (musashi1); RNA 99.8 4.5E-21 1.5E-25 105.4 7.1 75 18-92 1-75 (75)
75 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.7E-20 9.2E-25 116.5 11.5 88 12-99 68-156 (165)
76 2dgx_A KIAA0430 protein; RRM d 99.8 3.3E-20 1.1E-24 106.6 10.9 82 13-97 6-92 (96)
77 2dis_A Unnamed protein product 99.8 2.4E-20 8.1E-25 109.3 10.4 87 13-99 5-96 (109)
78 1x4a_A Splicing factor, argini 99.8 8.2E-20 2.8E-24 107.1 12.7 89 8-99 14-103 (109)
79 2err_A Ataxin-2-binding protei 99.8 2.1E-20 7.1E-25 109.8 9.6 87 8-96 21-108 (109)
80 1wez_A HnRNP H', FTP-3, hetero 99.8 1.7E-20 5.8E-25 109.1 9.1 85 11-97 10-94 (102)
81 1iqt_A AUF1, heterogeneous nuc 99.8 5.4E-21 1.8E-25 105.1 6.2 75 18-92 1-75 (75)
82 2lea_A Serine/arginine-rich sp 99.8 7.3E-21 2.5E-25 115.7 7.4 90 10-99 41-131 (135)
83 1x5o_A RNA binding motif, sing 99.8 6.8E-20 2.3E-24 108.2 11.3 86 10-96 19-113 (114)
84 2db1_A Heterogeneous nuclear r 99.8 1.8E-20 6.2E-25 111.5 8.7 85 11-96 12-99 (118)
85 2kt5_A RNA and export factor-b 99.8 6.8E-20 2.3E-24 109.7 11.3 87 12-99 31-118 (124)
86 2nlw_A Eukaryotic translation 99.8 3.2E-20 1.1E-24 108.3 9.5 88 8-97 7-102 (105)
87 2jwn_A Embryonic polyadenylate 99.8 5.4E-20 1.8E-24 110.1 10.7 83 15-97 35-117 (124)
88 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 4.9E-20 1.7E-24 112.1 10.7 82 11-92 58-140 (140)
89 1fj7_A Nucleolin RBD1, protein 99.8 2.3E-21 8E-26 112.3 4.4 89 9-98 10-98 (101)
90 1uaw_A Mouse-musashi-1; RNP-ty 99.8 9.7E-21 3.3E-25 104.5 6.7 77 17-93 1-77 (77)
91 2ek1_A RNA-binding protein 12; 99.8 1.3E-20 4.3E-25 107.9 7.3 82 13-94 12-94 (95)
92 1sjq_A Polypyrimidine tract-bi 99.8 4.4E-20 1.5E-24 107.6 9.5 82 12-99 12-96 (105)
93 2ki2_A SS-DNA binding protein 99.8 5E-21 1.7E-25 108.7 4.9 82 17-99 2-84 (90)
94 2cpi_A CCR4-NOT transcription 99.8 4.6E-20 1.6E-24 108.6 9.2 86 11-96 10-102 (111)
95 2fc8_A NCL protein; structure 99.8 1.2E-19 4E-24 105.2 10.6 89 8-99 7-96 (102)
96 1x4e_A RNA binding motif, sing 99.8 5.6E-21 1.9E-25 107.4 4.7 81 13-93 2-83 (85)
97 2hgl_A HNRPF protein, heteroge 99.8 2.2E-20 7.5E-25 113.7 7.6 85 11-96 39-126 (136)
98 1wel_A RNA-binding protein 12; 99.8 1.2E-20 4E-25 113.1 6.3 85 12-96 21-105 (124)
99 2fc9_A NCL protein; structure 99.8 1.2E-19 4.1E-24 105.0 10.0 86 10-99 9-95 (101)
100 1l3k_A Heterogeneous nuclear r 99.8 2E-19 6.7E-24 114.5 11.9 88 13-100 101-188 (196)
101 2lmi_A GRSF-1, G-rich sequence 99.8 1.1E-20 3.9E-25 110.6 5.1 86 10-96 5-93 (107)
102 2a3j_A U1 small nuclear ribonu 99.8 1.2E-19 4.2E-24 109.2 9.8 86 11-99 24-114 (127)
103 2ad9_A Polypyrimidine tract-bi 99.8 1.1E-19 3.8E-24 108.1 9.4 87 8-100 23-112 (119)
104 2cpx_A Hypothetical protein FL 99.8 2.9E-20 9.8E-25 109.9 6.7 88 12-99 21-109 (115)
105 2dnq_A RNA-binding protein 4B; 99.8 2.9E-19 9.8E-24 101.4 10.4 80 12-99 4-84 (90)
106 3q2s_C Cleavage and polyadenyl 99.8 1E-19 3.5E-24 119.4 9.8 81 15-95 67-150 (229)
107 2cq1_A PTB-like protein L; RRM 99.8 4.4E-19 1.5E-23 102.9 11.3 83 11-99 10-95 (101)
108 2dnn_A RNA-binding protein 12; 99.8 6.8E-20 2.3E-24 107.7 7.8 79 15-95 15-93 (109)
109 2jvo_A Nucleolar protein 3; nu 99.8 2.4E-19 8.2E-24 105.1 10.0 81 10-98 25-106 (108)
110 2hgm_A HNRPF protein, heteroge 99.8 5E-20 1.7E-24 110.7 7.2 84 11-96 37-122 (126)
111 1fjc_A Nucleolin RBD2, protein 99.8 8.6E-20 2.9E-24 104.7 7.7 86 8-98 8-94 (96)
112 4f02_A Polyadenylate-binding p 99.8 3.8E-19 1.3E-23 115.2 11.7 85 13-97 12-97 (213)
113 3r27_A HnRNP L, heterogeneous 99.8 4E-19 1.4E-23 102.6 10.3 78 13-96 18-98 (100)
114 1x4c_A Splicing factor, argini 99.8 8.7E-19 3E-23 102.6 11.3 81 12-99 11-97 (108)
115 2dha_A FLJ20171 protein; RRM d 99.8 6.7E-20 2.3E-24 109.8 6.6 82 14-96 21-106 (123)
116 1why_A Hypothetical protein ri 99.8 4.7E-19 1.6E-23 101.8 9.9 80 12-97 13-95 (97)
117 2lcw_A RNA-binding protein FUS 99.7 2.2E-21 7.4E-26 115.1 0.0 89 12-100 3-100 (116)
118 2wbr_A GW182, gawky, LD47780P; 99.8 4.9E-19 1.7E-23 99.5 9.6 74 14-93 5-79 (89)
119 1x4g_A Nucleolysin TIAR; struc 99.8 7.4E-19 2.5E-23 103.0 10.8 82 12-99 21-103 (109)
120 1fxl_A Paraneoplastic encephal 99.8 1E-18 3.6E-23 108.3 12.0 82 16-97 2-84 (167)
121 2e5j_A Methenyltetrahydrofolat 99.8 5.6E-19 1.9E-23 101.5 10.0 82 11-97 14-96 (97)
122 1nu4_A U1A RNA binding domain; 99.8 1.3E-19 4.4E-24 104.0 7.1 84 12-98 4-92 (97)
123 2dgt_A RNA-binding protein 30; 99.8 1.1E-18 3.8E-23 99.3 10.8 83 9-99 3-86 (92)
124 3md3_A Nuclear and cytoplasmic 99.8 1.5E-18 5.1E-23 107.5 12.3 84 11-94 82-166 (166)
125 3lqv_A PRE-mRNA branch site pr 99.8 4.1E-19 1.4E-23 104.9 9.2 83 13-98 5-88 (115)
126 2la4_A Nuclear and cytoplasmic 99.8 4.3E-19 1.5E-23 102.6 9.1 78 12-95 23-101 (101)
127 2xnq_A Nuclear polyadenylated 99.8 1.5E-18 5E-23 99.9 11.2 80 9-96 15-96 (97)
128 2dgu_A Heterogeneous nuclear r 99.8 1.2E-18 4.1E-23 101.1 11.0 83 10-100 5-88 (103)
129 2cpj_A Non-POU domain-containi 99.8 7.7E-19 2.6E-23 101.3 9.9 82 10-97 9-91 (99)
130 1wex_A Hypothetical protein (r 99.8 7.6E-19 2.6E-23 102.4 9.9 82 11-98 10-94 (104)
131 1x4d_A Matrin 3; structural ge 99.8 3E-19 1E-23 103.7 7.9 81 11-97 10-94 (102)
132 1wf1_A RNA-binding protein RAL 99.8 1.6E-18 5.5E-23 101.7 11.1 77 13-97 24-102 (110)
133 2jvr_A Nucleolar protein 3; RN 99.8 4.5E-19 1.5E-23 104.5 8.6 81 12-96 24-106 (111)
134 2e5g_A U6 snRNA-specific termi 99.8 1.8E-18 6.3E-23 98.8 10.8 82 13-99 5-86 (94)
135 2krb_A Eukaryotic translation 99.8 1.9E-19 6.5E-24 100.3 6.4 71 17-89 2-80 (81)
136 2hvz_A Splicing factor, argini 99.8 3E-19 1E-23 103.3 7.5 79 17-100 1-80 (101)
137 2dnp_A RNA-binding protein 14; 99.8 1.8E-18 6.2E-23 98.1 10.5 81 11-99 4-85 (90)
138 2i2y_A Fusion protein consists 99.8 9.8E-19 3.4E-23 107.8 10.1 82 10-96 67-149 (150)
139 3d2w_A TAR DNA-binding protein 99.8 8E-19 2.7E-23 99.6 8.9 82 10-97 5-86 (89)
140 1b7f_A Protein (SXL-lethal pro 99.8 9.5E-19 3.2E-23 108.8 10.0 84 15-98 2-86 (168)
141 2ytc_A PRE-mRNA-splicing facto 99.8 2.4E-18 8.2E-23 96.5 10.5 79 9-93 5-85 (85)
142 2yh0_A Splicing factor U2AF 65 99.8 2.5E-18 8.6E-23 109.5 11.9 84 14-97 112-196 (198)
143 2hgn_A Heterogeneous nuclear r 99.8 8.5E-20 2.9E-24 111.5 4.7 85 12-98 42-126 (139)
144 2cqh_A IGF-II mRNA-binding pro 99.8 6.5E-19 2.2E-23 100.4 8.1 82 12-100 4-88 (93)
145 2cpd_A Apobec-1 stimulating pr 99.8 4.1E-18 1.4E-22 98.2 11.5 81 11-99 10-93 (99)
146 2f3j_A RNA and export factor b 99.8 1.2E-18 4E-23 110.3 10.0 85 13-98 85-170 (177)
147 2cjk_A Nuclear polyadenylated 99.8 4E-19 1.4E-23 110.5 7.4 82 15-96 86-167 (167)
148 3pgw_S U1-70K; protein-RNA com 99.8 2.3E-18 7.7E-23 122.1 12.2 86 13-98 99-185 (437)
149 2e44_A Insulin-like growth fac 99.8 1.4E-18 4.8E-23 99.6 8.9 80 13-96 12-93 (96)
150 2g4b_A Splicing factor U2AF 65 99.8 4E-18 1.4E-22 106.4 11.5 80 13-92 91-171 (172)
151 3egn_A RNA-binding protein 40; 99.8 3.3E-19 1.1E-23 109.1 5.5 85 12-99 41-134 (143)
152 2kvi_A Nuclear polyadenylated 99.8 1.7E-18 5.8E-23 99.4 8.0 80 12-99 6-87 (96)
153 2qfj_A FBP-interacting repress 99.8 5.2E-18 1.8E-22 109.3 11.3 85 14-98 123-208 (216)
154 2j8a_A Histone-lysine N-methyl 99.8 2.3E-18 7.7E-23 103.0 8.7 77 17-93 3-94 (136)
155 3md3_A Nuclear and cytoplasmic 99.8 1.1E-17 3.7E-22 103.6 11.1 80 17-97 1-81 (166)
156 1x5p_A Negative elongation fac 99.8 2.1E-17 7.3E-22 94.9 11.4 81 11-99 10-91 (97)
157 1x4f_A Matrin 3; structural ge 99.8 2.7E-18 9.1E-23 101.2 7.4 79 13-97 22-104 (112)
158 4f02_A Polyadenylate-binding p 99.8 4.4E-18 1.5E-22 110.2 9.1 82 15-98 102-184 (213)
159 1wf0_A TDP-43, TAR DNA-binding 99.8 2.5E-18 8.7E-23 97.1 6.8 80 14-99 3-82 (88)
160 2voo_A Lupus LA protein; RNA-b 99.8 1.8E-17 6.3E-22 106.1 11.5 81 15-96 108-188 (193)
161 2dnl_A Cytoplasmic polyadenyla 99.8 4.9E-18 1.7E-22 100.3 8.2 81 13-95 5-88 (114)
162 2cjk_A Nuclear polyadenylated 99.7 5.9E-18 2E-22 105.2 8.6 82 15-97 2-83 (167)
163 1whx_A Hypothetical protein ri 99.7 3.4E-18 1.2E-22 100.6 7.0 77 13-95 7-84 (111)
164 1b7f_A Protein (SXL-lethal pro 99.7 3.5E-17 1.2E-21 101.7 11.1 80 13-92 86-168 (168)
165 2qfj_A FBP-interacting repress 99.7 1.6E-17 5.5E-22 107.0 9.8 83 15-97 27-110 (216)
166 1wg1_A KIAA1579 protein, homol 99.7 1.6E-17 5.6E-22 93.8 8.1 75 14-95 3-78 (88)
167 1sjr_A Polypyrimidine tract-bi 99.7 4.8E-17 1.6E-21 101.4 10.8 81 12-96 42-125 (164)
168 1fxl_A Paraneoplastic encephal 99.7 5E-17 1.7E-21 100.7 10.4 80 13-92 85-167 (167)
169 3nmr_A Cugbp ELAV-like family 99.7 3.8E-17 1.3E-21 102.0 9.4 81 12-93 91-175 (175)
170 1fje_B Nucleolin RBD12, protei 99.7 4.7E-17 1.6E-21 101.9 9.6 80 12-96 95-175 (175)
171 3beg_B Splicing factor, argini 99.7 1.8E-17 6.1E-22 98.1 7.1 77 14-97 14-96 (115)
172 2hzc_A Splicing factor U2AF 65 99.7 8.6E-17 2.9E-21 90.4 9.3 73 13-91 3-86 (87)
173 3nmr_A Cugbp ELAV-like family 99.7 6.7E-17 2.3E-21 100.9 9.7 83 15-97 2-90 (175)
174 3smz_A Protein raver-1, ribonu 99.7 5.8E-17 2E-21 108.6 9.8 87 12-99 180-268 (284)
175 2e5i_A Heterogeneous nuclear r 99.7 3.6E-16 1.2E-20 93.6 12.1 76 16-97 25-104 (124)
176 2bz2_A Negative elongation fac 99.7 9E-17 3.1E-21 95.9 9.1 80 12-99 35-115 (121)
177 2ghp_A U4/U6 snRNA-associated 99.7 9.2E-17 3.1E-21 108.0 10.2 84 12-96 206-292 (292)
178 3smz_A Protein raver-1, ribonu 99.7 3.7E-16 1.3E-20 104.7 12.9 84 15-98 94-178 (284)
179 3zzy_A Polypyrimidine tract-bi 99.7 2.5E-16 8.7E-21 94.8 10.7 81 12-97 24-108 (130)
180 3pgw_A U1-A; protein-RNA compl 99.7 1.8E-16 6E-21 106.2 11.0 84 11-97 4-92 (282)
181 2cq2_A Hypothetical protein LO 99.7 8.8E-17 3E-21 94.8 8.4 77 13-95 22-106 (114)
182 3tyt_A Heterogeneous nuclear r 99.7 2.3E-16 7.9E-21 101.8 10.2 76 15-95 3-80 (205)
183 1fje_B Nucleolin RBD12, protei 99.7 1.5E-17 5.2E-22 104.2 4.0 86 11-97 8-93 (175)
184 2diu_A KIAA0430 protein; struc 99.7 3.5E-16 1.2E-20 88.7 8.9 73 16-98 9-87 (96)
185 2pe8_A Splicing factor 45; RRM 99.7 8E-16 2.7E-20 89.7 10.7 81 14-94 6-93 (105)
186 2adc_A Polypyrimidine tract-bi 99.7 3E-16 1E-20 102.5 9.0 78 13-95 31-110 (229)
187 2ghp_A U4/U6 snRNA-associated 99.7 3.9E-16 1.3E-20 104.9 9.3 85 15-100 116-202 (292)
188 3sde_A Paraspeckle component 1 99.7 1.5E-15 5E-20 101.0 10.7 81 9-95 15-96 (261)
189 3pgw_A U1-A; protein-RNA compl 99.6 2.5E-15 8.4E-20 100.6 11.3 77 12-93 203-281 (282)
190 3u1l_A PRE-mRNA-splicing facto 99.6 7.9E-16 2.7E-20 101.3 7.7 79 13-97 131-231 (240)
191 2dit_A HIV TAT specific factor 99.6 9.7E-15 3.3E-19 85.8 11.3 84 11-98 10-105 (112)
192 1qm9_A Polypyrimidine tract-bi 99.6 7.9E-16 2.7E-20 98.2 6.8 76 15-95 2-79 (198)
193 1qm9_A Polypyrimidine tract-bi 99.6 6.4E-15 2.2E-19 93.9 9.4 77 14-95 118-197 (198)
194 2g4b_A Splicing factor U2AF 65 99.6 1.2E-14 4.2E-19 90.5 10.5 76 15-96 3-89 (172)
195 3sde_A Paraspeckle component 1 99.6 8.4E-15 2.9E-19 97.4 10.1 82 15-97 95-181 (261)
196 2adc_A Polypyrimidine tract-bi 99.6 1.8E-14 6.3E-19 94.0 10.8 76 15-95 150-228 (229)
197 2yh0_A Splicing factor U2AF 65 99.6 2E-14 6.9E-19 91.3 10.1 75 15-95 3-88 (198)
198 1jmt_A Splicing factor U2AF 35 99.6 1.9E-15 6.3E-20 88.0 3.8 71 21-92 20-103 (104)
199 2d9o_A DNAJ (HSP40) homolog, s 99.6 1.4E-13 4.7E-18 79.5 11.6 80 13-98 7-93 (100)
200 3tyt_A Heterogeneous nuclear r 99.6 1.3E-14 4.5E-19 93.6 7.8 69 15-85 122-193 (205)
201 3v4m_A Splicing factor U2AF 65 99.5 4.7E-14 1.6E-18 82.1 8.2 81 14-94 3-96 (105)
202 3ue2_A Poly(U)-binding-splicin 99.5 2.2E-13 7.5E-18 80.8 8.6 80 15-94 19-108 (118)
203 3tht_A Alkylated DNA repair pr 99.4 7E-13 2.4E-17 91.3 8.4 75 13-93 15-97 (345)
204 3s6e_A RNA-binding protein 39; 99.3 1.8E-11 6.1E-16 72.2 9.2 78 13-94 4-92 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.3 9E-11 3.1E-15 66.0 9.1 74 14-95 5-86 (91)
206 1owx_A Lupus LA protein, SS-B, 99.1 1E-10 3.5E-15 69.4 5.5 77 13-95 15-96 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.0 1.9E-09 6.6E-14 60.9 7.0 73 13-93 12-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.0 1.3E-09 4.5E-14 70.6 7.3 66 28-93 141-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.7 2E-07 6.9E-12 53.9 9.4 73 13-91 18-96 (117)
210 1wey_A Calcipressin 1; structu 98.2 1.8E-05 6E-10 45.4 7.9 79 15-99 4-88 (104)
211 2dhx_A Poly (ADP-ribose) polym 98.1 0.00014 4.7E-09 41.6 10.6 77 14-98 6-87 (104)
212 1whv_A Poly(A)-specific ribonu 98.0 6.5E-05 2.2E-09 42.5 7.4 56 13-77 13-68 (100)
213 1uw4_A UPF3X; nonsense mediate 97.9 0.00016 5.5E-09 40.5 7.9 66 17-82 2-70 (91)
214 1wwh_A Nucleoporin 35, nucleop 97.9 0.0002 6.9E-09 42.0 8.4 78 11-95 19-97 (119)
215 3ctr_A Poly(A)-specific ribonu 97.7 0.00013 4.3E-09 41.4 5.5 52 17-77 7-58 (101)
216 3p3d_A Nucleoporin 53; structu 97.1 0.00073 2.5E-08 40.2 4.4 78 16-94 7-98 (132)
217 2kn4_A Immunoglobulin G-bindin 97.0 0.0014 4.9E-08 39.7 4.9 30 46-77 3-32 (158)
218 2l08_A Regulator of nonsense t 96.9 0.001 3.4E-08 37.6 3.6 65 18-82 11-78 (97)
219 3pq1_A Poly(A) RNA polymerase; 96.7 0.0019 6.6E-08 46.2 4.2 57 15-77 52-108 (464)
220 2i2y_A Fusion protein consists 95.4 0.02 7E-07 34.3 4.0 41 54-95 9-51 (150)
221 3d45_A Poly(A)-specific ribonu 93.7 0.41 1.4E-05 34.7 7.9 54 15-77 439-492 (507)
222 2cs4_A Protein C12ORF2; GTP bi 30.3 39 0.0013 18.7 2.3 21 20-40 20-40 (95)
223 3mfb_A Uncharacterized protein 28.4 1E+02 0.0035 18.7 4.9 36 28-63 3-41 (157)
224 4eyt_A Telomerase associated p 26.7 86 0.0029 17.2 6.4 78 16-101 12-97 (129)
225 3fut_A Dimethyladenosine trans 24.9 95 0.0032 20.3 3.8 33 17-50 111-143 (271)
226 3h7h_B Transcription elongatio 23.6 1E+02 0.0036 17.2 3.4 22 56-77 49-70 (106)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.91 E-value=6.5e-24 Score=123.00 Aligned_cols=80 Identities=21% Similarity=0.445 Sum_probs=76.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEecc
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~ 93 (115)
..++|||+|||..+++++|+.+|++||.|..+.+++++.+|.++|||||+|.+.++|.+|+.. ++..++|+.|.|.+|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 457899999999999999999999999999999999998999999999999999999999987 9999999999999998
Q ss_pred C
Q psy13066 94 P 94 (115)
Q Consensus 94 ~ 94 (115)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 2
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.90 E-value=3.9e-24 Score=122.16 Aligned_cols=86 Identities=21% Similarity=0.295 Sum_probs=78.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcC-CeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc--CCCeeCCeEEEEEecc
Q psy13066 17 RKVFIGGLDYRTTDESLQAFFEQWG-EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN--RPHNIDGRVVETKRAV 93 (115)
Q Consensus 17 ~~l~v~~lp~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~--~~~~i~g~~i~v~~a~ 93 (115)
.+|||+|||+.+++++|+.+|++|| .|..+.+++++.+|.++|||||+|.+.++|.+|++. ++..++|+.|.|.+|.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 799999999998999999999999999999999986 4567999999999999
Q ss_pred CCcccccee
Q psy13066 94 PRDVRLYLV 102 (115)
Q Consensus 94 ~~~~~~~~~ 102 (115)
|+......|
T Consensus 82 ~~~~~~~DW 90 (91)
T 2lxi_A 82 PKPKINEDW 90 (91)
T ss_dssp SCCCCSCSC
T ss_pred CCCCCCCCC
Confidence 987765543
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.89 E-value=9.1e-23 Score=120.21 Aligned_cols=88 Identities=15% Similarity=0.361 Sum_probs=81.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEe
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~ 91 (115)
+.+.++|||+|||+.+++++|+.+|++||.|.++.++.++.+++++|||||+|.+.++|.+|+.. ++..++|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34567999999999999999999999999999999999998999999999999999999999998 99999999999999
Q ss_pred ccCCccccc
Q psy13066 92 AVPRDVRLY 100 (115)
Q Consensus 92 a~~~~~~~~ 100 (115)
+.....+.+
T Consensus 83 a~~~~~~~~ 91 (110)
T 3s8s_A 83 DIKGQQRMK 91 (110)
T ss_dssp CSTTHHHHH
T ss_pred CCCCcHHHH
Confidence 987766554
No 4
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.89 E-value=1.9e-22 Score=118.45 Aligned_cols=92 Identities=25% Similarity=0.538 Sum_probs=84.5
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeC
Q psy13066 5 YDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID 83 (115)
Q Consensus 5 ~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~ 83 (115)
...+.+..+.+.++|||+|||..+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|..|+.. ++..++
T Consensus 15 ~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~ 94 (108)
T 2jrs_A 15 MANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA 94 (108)
T ss_dssp SCCSSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred cccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4455566677789999999999999999999999999999999999988999999999999999999999987 899999
Q ss_pred CeEEEEEeccCCc
Q psy13066 84 GRVVETKRAVPRD 96 (115)
Q Consensus 84 g~~i~v~~a~~~~ 96 (115)
|+.|.|.++.++.
T Consensus 95 g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 95 GRPMKVGHVTERT 107 (108)
T ss_dssp SSCCEEECSCSSC
T ss_pred CEEEEEEEcccCC
Confidence 9999999998865
No 5
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.89 E-value=3.9e-22 Score=112.65 Aligned_cols=83 Identities=40% Similarity=0.825 Sum_probs=76.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEE
Q psy13066 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVET 89 (115)
Q Consensus 10 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v 89 (115)
+.++...++|||+|||..+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..++..++|+.|.|
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v 84 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDP 84 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEE
Confidence 34566788999999999999999999999999999999999988999999999999999999999988888999999999
Q ss_pred Eec
Q psy13066 90 KRA 92 (115)
Q Consensus 90 ~~a 92 (115)
.+|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 6
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=3.8e-22 Score=115.24 Aligned_cols=90 Identities=36% Similarity=0.680 Sum_probs=83.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEE
Q psy13066 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVET 89 (115)
Q Consensus 10 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v 89 (115)
..+....++|||+|||..+++++|+.+|.+||.|..+.++.++.++.++|||||+|.+.++|.+|+..++..++|+.|.|
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V 83 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 83 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEE
Confidence 34556778999999999999999999999999999999999988999999999999999999999988889999999999
Q ss_pred EeccCCcccc
Q psy13066 90 KRAVPRDVRL 99 (115)
Q Consensus 90 ~~a~~~~~~~ 99 (115)
.++.++....
T Consensus 84 ~~a~~~~~~~ 93 (99)
T 2dgs_A 84 KRAEPRDSKS 93 (99)
T ss_dssp EECCCCCCCC
T ss_pred EECCCCcccC
Confidence 9999877654
No 7
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.89 E-value=2.8e-22 Score=117.88 Aligned_cols=91 Identities=41% Similarity=0.760 Sum_probs=78.7
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEE
Q psy13066 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVE 88 (115)
Q Consensus 9 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~ 88 (115)
...++...++|||+|||..+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..++..++|+.|.
T Consensus 18 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~ 97 (109)
T 2rs2_A 18 GSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTID 97 (109)
T ss_dssp --------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEE
Confidence 34456677899999999999999999999999999999999998899999999999999999999999977999999999
Q ss_pred EEeccCCcccc
Q psy13066 89 TKRAVPRDVRL 99 (115)
Q Consensus 89 v~~a~~~~~~~ 99 (115)
|.++.++..+.
T Consensus 98 V~~a~~~~~~~ 108 (109)
T 2rs2_A 98 PKVAFPRRAQP 108 (109)
T ss_dssp EEECCCCCCCC
T ss_pred EEEccCCCCCC
Confidence 99999877653
No 8
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.88 E-value=5.8e-22 Score=110.89 Aligned_cols=80 Identities=26% Similarity=0.505 Sum_probs=76.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEeccCC
Q psy13066 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPR 95 (115)
Q Consensus 17 ~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~~~ 95 (115)
++|||+|||..+++++|+.+|++||.|..+.++.++.++.++|||||+|.+.++|.+|+.. ++..++|+.|.|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 5899999999999999999999999999999999988999999999999999999999997 999999999999999986
Q ss_pred c
Q psy13066 96 D 96 (115)
Q Consensus 96 ~ 96 (115)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 5
No 9
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.88 E-value=1.2e-21 Score=115.89 Aligned_cols=93 Identities=26% Similarity=0.429 Sum_probs=84.5
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeE
Q psy13066 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (115)
Q Consensus 8 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~ 86 (115)
....+....++|||+|||..+++++|+.+|..||.|..+.++.++.++.++|||||+|.+.++|..|+.. ++..++|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (115)
T 2dgo_A 7 GQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 86 (115)
T ss_dssp SSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3444566788999999999999999999999999999999999988999999999999999999999987 899999999
Q ss_pred EEEEeccCCccccc
Q psy13066 87 VETKRAVPRDVRLY 100 (115)
Q Consensus 87 i~v~~a~~~~~~~~ 100 (115)
|.|.++.++....+
T Consensus 87 l~V~~a~~~~~~~~ 100 (115)
T 2dgo_A 87 IRTNWATRKPPAPK 100 (115)
T ss_dssp CEEEESSCCCCCSC
T ss_pred EEEEEccCCCCCCc
Confidence 99999998776554
No 10
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=6.7e-22 Score=114.93 Aligned_cols=91 Identities=21% Similarity=0.348 Sum_probs=83.5
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEE
Q psy13066 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (115)
Q Consensus 9 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i 87 (115)
...+..+.++|||+|||..+++++|+.+|.+||.|..+.++.++.++.++|||||+|.+.++|..|+.. ++..++|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (103)
T 2cq0_A 8 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL 87 (103)
T ss_dssp SCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 344566788999999999999999999999999999999999988999999999999999999999997 8999999999
Q ss_pred EEEeccCCcccc
Q psy13066 88 ETKRAVPRDVRL 99 (115)
Q Consensus 88 ~v~~a~~~~~~~ 99 (115)
.|.++.++..+.
T Consensus 88 ~v~~a~~~~~~~ 99 (103)
T 2cq0_A 88 NVEWAKPSTNSG 99 (103)
T ss_dssp EEEESSCCCCSC
T ss_pred EEEECCCCCCCC
Confidence 999999876554
No 11
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=5.1e-22 Score=115.94 Aligned_cols=87 Identities=20% Similarity=0.342 Sum_probs=80.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEE
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v 89 (115)
......++|||+|||..+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|..|+.. ++..++|+.|.|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 3345567899999999999999999999999999999999998999999999999999999999997 899999999999
Q ss_pred EeccCCcc
Q psy13066 90 KRAVPRDV 97 (115)
Q Consensus 90 ~~a~~~~~ 97 (115)
.++.++..
T Consensus 98 ~~a~~~~~ 105 (106)
T 1p27_B 98 DWCFVRGP 105 (106)
T ss_dssp EESEESSC
T ss_pred EeecCCCC
Confidence 99987653
No 12
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=6.1e-22 Score=116.42 Aligned_cols=92 Identities=24% Similarity=0.412 Sum_probs=84.0
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-C------CCe
Q psy13066 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R------PHN 81 (115)
Q Consensus 9 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~------~~~ 81 (115)
.+.+....++|||+|||..+++++|+.+|.+||.|..+.++.++.++.++|||||+|.+.++|.+|+.. + +..
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 8 LPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 344566788999999999999999999999999999999999988999999999999999999999998 7 899
Q ss_pred eCCeEEEEEeccCCccccc
Q psy13066 82 IDGRVVETKRAVPRDVRLY 100 (115)
Q Consensus 82 i~g~~i~v~~a~~~~~~~~ 100 (115)
++|+.|.|.++.++....+
T Consensus 88 ~~g~~l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 88 LDGRQLKVDLAVTRDEAAS 106 (111)
T ss_dssp SSSCEEEEECCCCCCCCCC
T ss_pred EcCEEEEEEECCCCccCCC
Confidence 9999999999998876554
No 13
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=7.7e-22 Score=113.87 Aligned_cols=89 Identities=19% Similarity=0.416 Sum_probs=82.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEE
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~ 90 (115)
...+.++|||+|||..+++++|+.+|.+||.|..+.++.++.++.++|||||+|.+.++|..|+.. ++..++|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 355778999999999999999999999999999999999988999999999999999999999976 8999999999999
Q ss_pred eccCCccccc
Q psy13066 91 RAVPRDVRLY 100 (115)
Q Consensus 91 ~a~~~~~~~~ 100 (115)
++.++.....
T Consensus 84 ~a~~~~~~~~ 93 (99)
T 1whw_A 84 PSTIKKEASQ 93 (99)
T ss_dssp ECCCCSTTCC
T ss_pred EcCCCccccc
Confidence 9998876543
No 14
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=8.8e-22 Score=114.75 Aligned_cols=92 Identities=24% Similarity=0.432 Sum_probs=84.0
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeE
Q psy13066 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (115)
Q Consensus 8 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~ 86 (115)
....+....++|||+|||..+++++|+.+|.+||.|..+.++.++.++.++|||||+|.+.++|..|+.. ++..++|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (105)
T 1x5u_A 7 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP 86 (105)
T ss_dssp CCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB
T ss_pred CCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 3445566788999999999999999999999999999999999988999999999999999999999997 899999999
Q ss_pred EEEEeccCCcccc
Q psy13066 87 VETKRAVPRDVRL 99 (115)
Q Consensus 87 i~v~~a~~~~~~~ 99 (115)
|.|.++.++....
T Consensus 87 l~v~~a~~~~~~~ 99 (105)
T 1x5u_A 87 IRVNKASAHNKNL 99 (105)
T ss_dssp CEEEETTTTSCCC
T ss_pred EEEEECCCCCcCC
Confidence 9999999876543
No 15
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.88 E-value=8.5e-22 Score=111.11 Aligned_cols=82 Identities=29% Similarity=0.491 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEec
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a 92 (115)
.+.++|||+|||..+++++|+.+|++||.|..+.++.++.++.++|||||+|.+.++|..|+.. ++..++|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4567999999999999999999999999999999999988999999999999999999999997 899999999999999
Q ss_pred cCC
Q psy13066 93 VPR 95 (115)
Q Consensus 93 ~~~ 95 (115)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 16
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.88 E-value=9e-22 Score=116.51 Aligned_cols=91 Identities=21% Similarity=0.292 Sum_probs=83.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEE
Q psy13066 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (115)
Q Consensus 10 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~ 88 (115)
..+....++|||+|||..+++++|+.+|..||.|..+.++.++.++.++|||||+|.+.++|.+|+.. ++..++|+.|.
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34455668999999999999999999999999999999999988999999999999999999999987 99999999999
Q ss_pred EEeccCCccccc
Q psy13066 89 TKRAVPRDVRLY 100 (115)
Q Consensus 89 v~~a~~~~~~~~ 100 (115)
|.++.++..+..
T Consensus 99 V~~a~~~~~~~~ 110 (115)
T 2cpz_A 99 VQLKRSKNDSKS 110 (115)
T ss_dssp EECCCCSCCCCC
T ss_pred EEEcCCCCcCCC
Confidence 999998776543
No 17
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.4e-21 Score=113.04 Aligned_cols=88 Identities=16% Similarity=0.364 Sum_probs=81.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEE
Q psy13066 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (115)
Q Consensus 10 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~ 88 (115)
.....+.++|||+|||..+++++|+.+|.+||.|..+.++.++ ++.++|||||+|.+.++|.+|+.. ++..++|+.|.
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3445667899999999999999999999999999999999998 999999999999999999999987 89999999999
Q ss_pred EEeccCCccc
Q psy13066 89 TKRAVPRDVR 98 (115)
Q Consensus 89 v~~a~~~~~~ 98 (115)
|.++.++..+
T Consensus 90 v~~a~~~~~~ 99 (100)
T 2do4_A 90 VAISNSGPSS 99 (100)
T ss_dssp EEECCCCSCC
T ss_pred EEECCCCCCC
Confidence 9999987653
No 18
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.88 E-value=9.1e-22 Score=119.95 Aligned_cols=94 Identities=23% Similarity=0.417 Sum_probs=84.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEE
Q psy13066 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (115)
Q Consensus 10 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~ 88 (115)
..++...++|||+|||..+++++|+.+|+.||.|..+.++.++.+++++|||||+|.+.++|.+|+.. ++..++|+.|.
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34456678999999999999999999999999999999999988999999999999999999999997 89999999999
Q ss_pred EEeccCCccccceee
Q psy13066 89 TKRAVPRDVRLYLVF 103 (115)
Q Consensus 89 v~~a~~~~~~~~~~~ 103 (115)
|.++.++..+.....
T Consensus 116 v~~a~~~~~~~~~~~ 130 (139)
T 1u6f_A 116 VALAASGHQRPGIAG 130 (139)
T ss_dssp EEESSCCCCCCCSSC
T ss_pred EEECCCCCCCCCCCC
Confidence 999998877655433
No 19
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=5.1e-22 Score=115.80 Aligned_cols=92 Identities=40% Similarity=0.854 Sum_probs=84.6
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEE
Q psy13066 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVV 87 (115)
Q Consensus 8 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i 87 (115)
....++...++|||+|||+.+++++|+.+|.+||.|..+.++.++.++.++|||||+|.+.++|.+|+..++..|+|+.|
T Consensus 8 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l 87 (105)
T 2dh8_A 8 MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNI 87 (105)
T ss_dssp CCCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEE
T ss_pred CCcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEE
Confidence 34456677899999999999999999999999999999999999889999999999999999999999888899999999
Q ss_pred EEEeccCCcccc
Q psy13066 88 ETKRAVPRDVRL 99 (115)
Q Consensus 88 ~v~~a~~~~~~~ 99 (115)
.|.++.++....
T Consensus 88 ~V~~a~~~~~~~ 99 (105)
T 2dh8_A 88 DPKPCTPRGMQP 99 (105)
T ss_dssp BCCCSCCSSCCT
T ss_pred EEEEccCCCCCC
Confidence 999999887654
No 20
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=2.8e-21 Score=112.32 Aligned_cols=90 Identities=20% Similarity=0.362 Sum_probs=81.4
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEE
Q psy13066 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVE 88 (115)
Q Consensus 9 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~ 88 (115)
....+.+.++|||+|||..+++++|+.+|.+|| |..+.++.++.++.++|||||+|.+.++|.+|+..++..|+|+.|.
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~ 86 (103)
T 2dng_A 8 KELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLR 86 (103)
T ss_dssp CCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECE
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEE
Confidence 344556778999999999999999999999997 9999999999899999999999999999999995599999999999
Q ss_pred EEeccCCcccc
Q psy13066 89 TKRAVPRDVRL 99 (115)
Q Consensus 89 v~~a~~~~~~~ 99 (115)
|.++.++....
T Consensus 87 V~~a~~~~~~~ 97 (103)
T 2dng_A 87 VDIAEGRKQDK 97 (103)
T ss_dssp EEECCCCCCCC
T ss_pred EEEecCCCCCC
Confidence 99999876544
No 21
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=7e-22 Score=114.62 Aligned_cols=92 Identities=26% Similarity=0.456 Sum_probs=83.7
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEE
Q psy13066 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (115)
Q Consensus 9 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i 87 (115)
......+.++|||+|||..+++++|+.+|.+||.|..+.++.++.++.++|||||+|.+.++|..|+.. ++..++|+.|
T Consensus 5 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2cqb_A 5 SSGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 84 (102)
T ss_dssp SSCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEE
T ss_pred cCCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 344456778999999999999999999999999999999999988999999999999999999999987 9999999999
Q ss_pred EEEeccCCccccc
Q psy13066 88 ETKRAVPRDVRLY 100 (115)
Q Consensus 88 ~v~~a~~~~~~~~ 100 (115)
.|.++.++..+..
T Consensus 85 ~V~~a~~~~~~~~ 97 (102)
T 2cqb_A 85 RVNLAKPMRIKES 97 (102)
T ss_dssp EEEECCCCCCCCC
T ss_pred EEEeCCCCCCCCC
Confidence 9999998776543
No 22
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.7e-21 Score=111.79 Aligned_cols=91 Identities=30% Similarity=0.486 Sum_probs=82.2
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEE
Q psy13066 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVE 88 (115)
Q Consensus 9 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~ 88 (115)
......+.++|||+|||..+++++|+.+|.+||.|..+.++.++.++.++|||||+|.+.++|.+|+.. +..++|+.|.
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~ 86 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCD 86 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEE
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEE
Confidence 344556678999999999999999999999999999999999988999999999999999999999984 6789999999
Q ss_pred EEeccCCccccc
Q psy13066 89 TKRAVPRDVRLY 100 (115)
Q Consensus 89 v~~a~~~~~~~~ 100 (115)
|.++.++....+
T Consensus 87 v~~a~~~~~~~~ 98 (103)
T 2cqg_A 87 CKLPNSKQSQDS 98 (103)
T ss_dssp EECCCTTCCCCC
T ss_pred EEecCCCCcCCC
Confidence 999998876543
No 23
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.7e-21 Score=111.55 Aligned_cols=86 Identities=29% Similarity=0.558 Sum_probs=80.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEec
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a 92 (115)
.+.++|||+|||..+++++|+.+|++||.|..+.+..++.++.++|||||+|.+.++|..|+.. ++..++|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4678999999999999999999999999999999999988899999999999999999999997 999999999999999
Q ss_pred cCCcccc
Q psy13066 93 VPRDVRL 99 (115)
Q Consensus 93 ~~~~~~~ 99 (115)
.++....
T Consensus 83 ~~~~~~~ 89 (95)
T 2dnz_A 83 TERLDGG 89 (95)
T ss_dssp SCCCCCC
T ss_pred ccccCCC
Confidence 9876543
No 24
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.87 E-value=1.3e-21 Score=115.01 Aligned_cols=89 Identities=17% Similarity=0.259 Sum_probs=81.5
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEE
Q psy13066 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (115)
Q Consensus 9 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i 87 (115)
.+....+.++|||+|||..+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|..|+.. ++..++|+.|
T Consensus 19 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 98 (110)
T 1oo0_B 19 GPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 98 (110)
T ss_dssp CBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 334455678999999999999999999999999999999999988999999999999999999999997 9999999999
Q ss_pred EEEeccCCcc
Q psy13066 88 ETKRAVPRDV 97 (115)
Q Consensus 88 ~v~~a~~~~~ 97 (115)
.|.++.++..
T Consensus 99 ~V~~a~~~~~ 108 (110)
T 1oo0_B 99 QVDWCFVKGP 108 (110)
T ss_dssp EEEESEESSC
T ss_pred EEEEcccCCC
Confidence 9999987664
No 25
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=8.8e-22 Score=114.43 Aligned_cols=91 Identities=27% Similarity=0.507 Sum_probs=82.7
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEE
Q psy13066 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (115)
Q Consensus 9 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i 87 (115)
++.+..+.++|||+|||..+++++|+.+|.+||.|..+.++.++.++.++|||||+|.+.++|.+|+.. ++..++|+.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 344556778999999999999999999999999999999999988899999999999999999999997 8999999999
Q ss_pred EEEeccCCcccc
Q psy13066 88 ETKRAVPRDVRL 99 (115)
Q Consensus 88 ~v~~a~~~~~~~ 99 (115)
.|.++.++....
T Consensus 86 ~V~~a~~~~~~~ 97 (103)
T 2dnm_A 86 RVQVARYGRRDL 97 (103)
T ss_dssp EEEECSSCCSCC
T ss_pred EEEECCcCCCCC
Confidence 999998765443
No 26
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.2e-21 Score=111.04 Aligned_cols=87 Identities=25% Similarity=0.463 Sum_probs=80.1
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeE
Q psy13066 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (115)
Q Consensus 8 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~ 86 (115)
....++.+.++|||+|||..+++++|+.+|.+||.|..+.++.++.++.++|||||+|.+.++|.+|+.. ++..++|+.
T Consensus 7 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (95)
T 2cqc_A 7 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 86 (95)
T ss_dssp CCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3445566778999999999999999999999999999999999988899999999999999999999997 999999999
Q ss_pred EEEEeccC
Q psy13066 87 VETKRAVP 94 (115)
Q Consensus 87 i~v~~a~~ 94 (115)
|.|.++.+
T Consensus 87 l~v~~a~~ 94 (95)
T 2cqc_A 87 IRVSGPSS 94 (95)
T ss_dssp EEEECCSC
T ss_pred EEEEecCC
Confidence 99998864
No 27
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.87 E-value=1.9e-21 Score=112.29 Aligned_cols=86 Identities=19% Similarity=0.293 Sum_probs=79.2
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeE--------EEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-C
Q psy13066 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVD--------VVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R 78 (115)
Q Consensus 8 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~ 78 (115)
..+..+...++|||+|||..+++++|+.+|++||.|.. +.++.++.+|.++|||||+|.+.++|..|+.. +
T Consensus 5 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 5 HHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp CSCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 44455667889999999999999999999999999999 99999988999999999999999999999987 9
Q ss_pred CCeeCCeEEEEEecc
Q psy13066 79 PHNIDGRVVETKRAV 93 (115)
Q Consensus 79 ~~~i~g~~i~v~~a~ 93 (115)
+..++|+.|.|.+|+
T Consensus 85 g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 85 GKEFSGNPIKVSFAT 99 (99)
T ss_dssp TCBSSSSBCEEEECC
T ss_pred CCEeCCcEEEEEecC
Confidence 999999999999874
No 28
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.87 E-value=2e-21 Score=111.65 Aligned_cols=84 Identities=24% Similarity=0.477 Sum_probs=79.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEeccC
Q psy13066 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVP 94 (115)
Q Consensus 16 ~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~~ 94 (115)
.++|||+|||..+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|..|+.. ++..++|+.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57999999999999999999999999999999999988999999999999999999999987 99999999999999998
Q ss_pred Ccccc
Q psy13066 95 RDVRL 99 (115)
Q Consensus 95 ~~~~~ 99 (115)
+....
T Consensus 82 ~~~~~ 86 (96)
T 2x1f_A 82 SDISG 86 (96)
T ss_dssp SSGGG
T ss_pred CCCCC
Confidence 76543
No 29
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.3e-21 Score=112.29 Aligned_cols=86 Identities=26% Similarity=0.450 Sum_probs=80.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEE-EEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEe
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDV-VVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~ 91 (115)
.+.++|||+|||..+++++|+.+|++||.|..+ .++.++.++.++|||||+|.+.++|..|+.. ++..++|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456799999999999999999999999999999 9999988999999999999999999999997 89999999999999
Q ss_pred ccCCcccc
Q psy13066 92 AVPRDVRL 99 (115)
Q Consensus 92 a~~~~~~~ 99 (115)
+.++..+.
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 99877554
No 30
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=8e-22 Score=116.88 Aligned_cols=87 Identities=60% Similarity=1.038 Sum_probs=81.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEecc
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAV 93 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~a~ 93 (115)
...++|||+|||..+++++|+.+|..||.|..+.++.++.++.++|||||+|.+.++|..|+..++..|+|+.|.|.++.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 34589999999999999999999999999999999999889999999999999999999999988899999999999999
Q ss_pred CCccccc
Q psy13066 94 PRDVRLY 100 (115)
Q Consensus 94 ~~~~~~~ 100 (115)
++....+
T Consensus 105 ~~~~~~~ 111 (116)
T 1x4b_A 105 AREESGS 111 (116)
T ss_dssp SCCCCCC
T ss_pred CCccCCC
Confidence 8876543
No 31
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.87 E-value=1.3e-21 Score=114.20 Aligned_cols=92 Identities=26% Similarity=0.398 Sum_probs=83.4
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCee---C
Q psy13066 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI---D 83 (115)
Q Consensus 8 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i---~ 83 (115)
+....+...++|||+|||..+++++|+.+|.+||.|..+.++.++.++.++|||||+|.+.++|.+|+.. ++..+ .
T Consensus 5 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 84 (106)
T 2dgp_A 5 SSGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM 84 (106)
T ss_dssp CCSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC
Confidence 4455667788999999999999999999999999999999999988999999999999999999999987 88777 8
Q ss_pred CeEEEEEeccCCcccc
Q psy13066 84 GRVVETKRAVPRDVRL 99 (115)
Q Consensus 84 g~~i~v~~a~~~~~~~ 99 (115)
|+.|.|.++.++..+.
T Consensus 85 g~~l~v~~a~~~~~~~ 100 (106)
T 2dgp_A 85 NRPIQVKPADSESRGG 100 (106)
T ss_dssp SSCCEEEECCCCSCCC
T ss_pred CceEEEEECCcccccC
Confidence 9999999999876654
No 32
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=1.7e-21 Score=115.52 Aligned_cols=83 Identities=24% Similarity=0.421 Sum_probs=74.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEecc
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~ 93 (115)
..++|||+|||+.+++++|+.+|++||.|..+.++.++ +.++|||||+|.+.++|.+|+.. ++..|+|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45789999999999999999999999999999999985 45799999999999999999987 9999999999999998
Q ss_pred CCcccc
Q psy13066 94 PRDVRL 99 (115)
Q Consensus 94 ~~~~~~ 99 (115)
++..+.
T Consensus 82 ~~~~~~ 87 (115)
T 4f25_A 82 SRKERE 87 (115)
T ss_dssp CCCC--
T ss_pred Cccccc
Confidence 876544
No 33
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.87 E-value=1.9e-21 Score=109.27 Aligned_cols=81 Identities=28% Similarity=0.502 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEe
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~ 91 (115)
+.+.++|||+|||..+++++|+.+|++||.|..+.++.++.++.++|||||+|.+.++|..|+.. ++..++|+.|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999977 99999999999998
Q ss_pred cc
Q psy13066 92 AV 93 (115)
Q Consensus 92 a~ 93 (115)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 34
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.6e-21 Score=113.13 Aligned_cols=90 Identities=36% Similarity=0.626 Sum_probs=82.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEE
Q psy13066 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (115)
Q Consensus 10 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~ 88 (115)
.....+.++|||+|||..+++++|+.+|.+||.|..+.++.++.++.++|||||+|.+.++|..|+.. ++..++|+.|.
T Consensus 6 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 6 SGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34456778999999999999999999999999999999999988999999999999999999999977 89999999999
Q ss_pred EEeccCCcccc
Q psy13066 89 TKRAVPRDVRL 99 (115)
Q Consensus 89 v~~a~~~~~~~ 99 (115)
|.++.++....
T Consensus 86 v~~a~~~~~~~ 96 (102)
T 1x5s_A 86 VDQAGKSSDNR 96 (102)
T ss_dssp EEEEECCCCCC
T ss_pred EEECCCCCCCC
Confidence 99998876543
No 35
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.87 E-value=4.2e-21 Score=111.84 Aligned_cols=88 Identities=20% Similarity=0.332 Sum_probs=80.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCC---eE
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG---RV 86 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g---~~ 86 (115)
......++|||+|||..+++++|+.+|.+||.|..+.++.++ ++.++|||||+|.+.++|.+|+.. ++..+.| +.
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~ 88 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSS 88 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCcc
Confidence 334567899999999999999999999999999999999998 899999999999999999999987 8888888 99
Q ss_pred EEEEeccCCcccc
Q psy13066 87 VETKRAVPRDVRL 99 (115)
Q Consensus 87 i~v~~a~~~~~~~ 99 (115)
|.|.++.++..+.
T Consensus 89 l~V~~a~~~~~~~ 101 (105)
T 2dnh_A 89 LVVKFADTDKESG 101 (105)
T ss_dssp CEEEESCSSCCCS
T ss_pred EEEEECccCcccC
Confidence 9999999877654
No 36
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2e-21 Score=114.63 Aligned_cols=91 Identities=18% Similarity=0.268 Sum_probs=83.2
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCee--------EEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CC
Q psy13066 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIV--------DVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RP 79 (115)
Q Consensus 9 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~ 79 (115)
...+....++|||+|||..+++++|+.+|.+||.|. .+.++.++.++.++|||||+|.+.++|..|+.. ++
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 8 DPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CcccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 345566788999999999999999999999999998 699999988999999999999999999999997 99
Q ss_pred CeeCCeEEEEEeccCCcccc
Q psy13066 80 HNIDGRVVETKRAVPRDVRL 99 (115)
Q Consensus 80 ~~i~g~~i~v~~a~~~~~~~ 99 (115)
..++|+.|.|.++.++....
T Consensus 88 ~~~~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 88 KDFQGSKLKVSLARKKPPMN 107 (113)
T ss_dssp CEETTEECEEECSSCCCCST
T ss_pred CccCCCEEEEEECCCCCCCC
Confidence 99999999999999877654
No 37
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.8e-21 Score=112.54 Aligned_cols=90 Identities=21% Similarity=0.384 Sum_probs=81.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCC-CCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEE
Q psy13066 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPIT-KRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVE 88 (115)
Q Consensus 10 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~ 88 (115)
+.++.+.++|||+|||..+++++|+.+|..|| |..+.++.++.+ +.++|||||+|.+.++|.+|+..++..++|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIR 87 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEE
Confidence 34455678999999999999999999999999 999999999877 9999999999999999999994489999999999
Q ss_pred EEeccCCccccc
Q psy13066 89 TKRAVPRDVRLY 100 (115)
Q Consensus 89 v~~a~~~~~~~~ 100 (115)
|.++.++..+.+
T Consensus 88 V~~a~~~~~~~~ 99 (104)
T 1wi8_A 88 VDVADQAQDKDS 99 (104)
T ss_dssp EEECCCCCCCCC
T ss_pred EEEccCCCCCCC
Confidence 999998876553
No 38
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.87 E-value=6.1e-22 Score=113.86 Aligned_cols=81 Identities=19% Similarity=0.372 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCC--eeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCC----eeCCeE
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGE--IVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPH----NIDGRV 86 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~--i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~----~i~g~~ 86 (115)
..-.+|||+|||+.+|+++|+++|++||. +..+++++|+.+|.++|||||+|.+.++|.+|++. ++. .|+|+.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34458999999999999999999999995 56899999999999999999999999999999987 554 699999
Q ss_pred EEEEeccC
Q psy13066 87 VETKRAVP 94 (115)
Q Consensus 87 i~v~~a~~ 94 (115)
|.|++|++
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999875
No 39
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.87 E-value=2.2e-22 Score=114.52 Aligned_cols=82 Identities=18% Similarity=0.342 Sum_probs=71.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcC--CeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEecc
Q psy13066 17 RKVFIGGLDYRTTDESLQAFFEQWG--EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (115)
Q Consensus 17 ~~l~v~~lp~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~ 93 (115)
.+|||+|||..+++++|+.+|++|| .+..+.++.++.+|+++|||||+|.+.++|.+|+.. ++..++|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 999999999998999999999999999999999987 8999999999999998
Q ss_pred CCccc
Q psy13066 94 PRDVR 98 (115)
Q Consensus 94 ~~~~~ 98 (115)
+....
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 86544
No 40
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=6.3e-21 Score=113.00 Aligned_cols=89 Identities=36% Similarity=0.648 Sum_probs=80.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEE
Q psy13066 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (115)
Q Consensus 9 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i 87 (115)
...++...++|||+|||..+++++|+.+|.+||.|..+.++.++.++.++|||||+|.+.++|.+|+.. ++ .++|+.|
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEE
Confidence 345566788999999999999999999999999999999999988999999999999999999999999 55 8999999
Q ss_pred EEEeccCCccc
Q psy13066 88 ETKRAVPRDVR 98 (115)
Q Consensus 88 ~v~~a~~~~~~ 98 (115)
.|.++.++...
T Consensus 89 ~V~~a~~~~~~ 99 (116)
T 2cqd_A 89 NVNLAYLGAKP 99 (116)
T ss_dssp EEEESTTTCCC
T ss_pred EEEEcccCCCc
Confidence 99999765443
No 41
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.87 E-value=1.5e-21 Score=117.93 Aligned_cols=89 Identities=25% Similarity=0.464 Sum_probs=82.0
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEE
Q psy13066 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (115)
Q Consensus 9 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i 87 (115)
...++.+.++|||+|||..+++++|+.+|.+||.|..+.++.++.++.++|||||+|.+.++|.+|+.. ++..|+|+.|
T Consensus 39 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 39 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp CSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 444566778999999999999999999999999999999999988999999999999999999999997 8999999999
Q ss_pred EEEeccCCcc
Q psy13066 88 ETKRAVPRDV 97 (115)
Q Consensus 88 ~v~~a~~~~~ 97 (115)
.|.++.++..
T Consensus 119 ~V~~a~~~~p 128 (129)
T 2kxn_B 119 RVDFSITKRP 128 (129)
T ss_dssp EESCCSSSSC
T ss_pred EEEEecCCCC
Confidence 9999987653
No 42
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=3.6e-21 Score=111.81 Aligned_cols=90 Identities=22% Similarity=0.371 Sum_probs=81.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEE
Q psy13066 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (115)
Q Consensus 9 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i 87 (115)
...++.+.++|||+|||+.+++++|+.+|.+||.|..+.++.+ ++.++|||||+|.+.++|.+|+.. ++..++|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2d9p_A 8 DRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 85 (103)
T ss_dssp CCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3344567889999999999999999999999999999999998 889999999999999999999997 8999999999
Q ss_pred EEEeccCCccccc
Q psy13066 88 ETKRAVPRDVRLY 100 (115)
Q Consensus 88 ~v~~a~~~~~~~~ 100 (115)
.|.++.++..+..
T Consensus 86 ~V~~a~~~~~~~~ 98 (103)
T 2d9p_A 86 YVALAQRKEERQS 98 (103)
T ss_dssp EEEECSSCCCCCC
T ss_pred EEEEecccccCCC
Confidence 9999998776543
No 43
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=4.1e-21 Score=109.81 Aligned_cols=84 Identities=25% Similarity=0.487 Sum_probs=77.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEE
Q psy13066 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (115)
Q Consensus 10 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~ 88 (115)
...+.+.++|||+|||..+++++|+.+|.+||.|..+.++.++.++.++|||||+|.+.++|.+|+.. ++..++|+.|.
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 10 GGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp CSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34455678999999999999999999999999999999999988899999999999999999999987 89999999999
Q ss_pred EEecc
Q psy13066 89 TKRAV 93 (115)
Q Consensus 89 v~~a~ 93 (115)
|.+|+
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99874
No 44
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.86 E-value=1.7e-21 Score=121.13 Aligned_cols=83 Identities=17% Similarity=0.380 Sum_probs=77.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcC--CeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEe
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWG--EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~ 91 (115)
..++|||+|||+.+++++|+.+|..|| .|..+.++.++.+|.++|||||+|.+.++|.+|+.. ++..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 999999999999999999999999999999999999 89999999999999
Q ss_pred ccCCcc
Q psy13066 92 AVPRDV 97 (115)
Q Consensus 92 a~~~~~ 97 (115)
+.++..
T Consensus 134 a~~~~~ 139 (156)
T 3n9u_C 134 ATRQNL 139 (156)
T ss_dssp CCHHHH
T ss_pred cCCCcc
Confidence 987643
No 45
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.86 E-value=9.5e-21 Score=107.18 Aligned_cols=82 Identities=23% Similarity=0.496 Sum_probs=76.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEeccC
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~a~~ 94 (115)
..++|||+|||..+++++|+.+|++||.|..+.+..++.++.++|||||+|.+.++|.+|+..++..++|+.|.|.++.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 45799999999999999999999999999999999998899999999999999999999994499999999999999987
Q ss_pred Cc
Q psy13066 95 RD 96 (115)
Q Consensus 95 ~~ 96 (115)
..
T Consensus 85 ~~ 86 (89)
T 3ucg_A 85 NR 86 (89)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 46
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=5.4e-21 Score=110.28 Aligned_cols=86 Identities=14% Similarity=0.323 Sum_probs=79.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCee-EEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeE--
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIV-DVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV-- 86 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~-~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~-- 86 (115)
......++|||+|||..+++++|+.+|.+||.|. .+.++.++.++.++|||||+|.+.++|.+|+.. ++..++|+.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 3455678999999999999999999999999999 999999988999999999999999999999997 899999999
Q ss_pred --EEEEeccCCc
Q psy13066 87 --VETKRAVPRD 96 (115)
Q Consensus 87 --i~v~~a~~~~ 96 (115)
|+|.++.+..
T Consensus 84 ~~l~v~~a~~~~ 95 (99)
T 2div_A 84 KRFKLNYATYSG 95 (99)
T ss_dssp EECCEEETTCCS
T ss_pred eeEEEeecCCCC
Confidence 9999998754
No 47
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.86 E-value=8.3e-21 Score=120.88 Aligned_cols=106 Identities=57% Similarity=0.895 Sum_probs=83.7
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEE
Q psy13066 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVV 87 (115)
Q Consensus 8 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i 87 (115)
..+.++...++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..++..++|+.|
T Consensus 5 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l 84 (196)
T 1l3k_A 5 ESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 84 (196)
T ss_dssp ---CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEEC
T ss_pred cCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEe
Confidence 34455667889999999999999999999999999999999999889999999999999999999999988899999999
Q ss_pred EEEeccCCccccceeeeceeeeeeee
Q psy13066 88 ETKRAVPRDVRLYLVFCVSVLISFVT 113 (115)
Q Consensus 88 ~v~~a~~~~~~~~~~~~~~~~~~~~~ 113 (115)
.|.++.++..............+|+.
T Consensus 85 ~v~~~~~~~~~~~~~~~~~~~~l~V~ 110 (196)
T 1l3k_A 85 EPKRAVSREDSQRPGAHLTVKKIFVG 110 (196)
T ss_dssp EEEECCC-----------CCSEEEEE
T ss_pred eeecccCcccccccccCCCcceEEEe
Confidence 99999877655544444444455543
No 48
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=5.3e-21 Score=111.69 Aligned_cols=92 Identities=17% Similarity=0.366 Sum_probs=83.0
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeC-CCCCCcccEEEEEEcCHHHHHHHHhc--CCCeeCC
Q psy13066 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKD-PITKRSRGFGFITYSEAKMVDDAMSN--RPHNIDG 84 (115)
Q Consensus 8 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~-~~~~~~~g~~fv~f~~~~~a~~al~~--~~~~i~g 84 (115)
....+....++|||+|||..+++++|+.+|.+||.|..+.++.+ +.++.++|||||+|.+.++|.+|+.. ++..++|
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g 86 (107)
T 2cph_A 7 GQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG 86 (107)
T ss_dssp CSSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS
T ss_pred cccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC
Confidence 34455667789999999999999999999999999999999998 77899999999999999999999987 6899999
Q ss_pred eEEEEEeccCCcccc
Q psy13066 85 RVVETKRAVPRDVRL 99 (115)
Q Consensus 85 ~~i~v~~a~~~~~~~ 99 (115)
+.|.|.++.++....
T Consensus 87 ~~l~v~~a~~~~~~~ 101 (107)
T 2cph_A 87 RRLVLEWADSEVTVQ 101 (107)
T ss_dssp CBCEEEECCCCCCCC
T ss_pred CEEEEEeCCCCCCCC
Confidence 999999999876544
No 49
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.86 E-value=2.8e-21 Score=109.10 Aligned_cols=83 Identities=18% Similarity=0.380 Sum_probs=76.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCC-cccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEec
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKR-SRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~-~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a 92 (115)
..++|||+|||..+++++|+.+|++||.|..+.++.++.++. ++|||||+|.+.++|.+|+.. ++..++|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 567999999999999999999999999999999998876665 899999999999999999997 999999999999999
Q ss_pred cCCcc
Q psy13066 93 VPRDV 97 (115)
Q Consensus 93 ~~~~~ 97 (115)
.+...
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 50
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.86 E-value=5.7e-21 Score=113.41 Aligned_cols=86 Identities=31% Similarity=0.607 Sum_probs=79.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEE
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~ 90 (115)
+....++|||+|||..+++++|+.+|++||.|..+.+..++ ++.++|||||+|.+.++|..|+.. ++..++|+.|.|.
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999998 999999999999999999999987 8999999999999
Q ss_pred eccCCccc
Q psy13066 91 RAVPRDVR 98 (115)
Q Consensus 91 ~a~~~~~~ 98 (115)
++.++...
T Consensus 82 ~a~~~~~~ 89 (116)
T 2fy1_A 82 QAKKPSFQ 89 (116)
T ss_dssp ECCCSSCS
T ss_pred ECCCCCCC
Confidence 99876544
No 51
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.3e-21 Score=112.97 Aligned_cols=82 Identities=12% Similarity=0.197 Sum_probs=76.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEe
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKR 91 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~ 91 (115)
++...++|||+|||+.+++++|+.+|++||.|..+.++.++. |.++|||||+|.+.++|..|+..++..++|+.|.|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345678999999999999999999999999999999999985 9999999999999999999999888999999999998
Q ss_pred ccC
Q psy13066 92 AVP 94 (115)
Q Consensus 92 a~~ 94 (115)
+.+
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 765
No 52
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.1e-20 Score=108.56 Aligned_cols=90 Identities=24% Similarity=0.503 Sum_probs=80.8
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeE
Q psy13066 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (115)
Q Consensus 8 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~ 86 (115)
.....+...++|||+|||..+++++|+.+|.+||.|..+.++.++. .++|||||+|.+.++|..|+.. ++..++|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cq3_A 7 GNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRK 84 (103)
T ss_dssp CCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 4455567789999999999999999999999999999999998863 3899999999999999999997 999999999
Q ss_pred EEEEeccCCcccc
Q psy13066 87 VETKRAVPRDVRL 99 (115)
Q Consensus 87 i~v~~a~~~~~~~ 99 (115)
|.|.++.++....
T Consensus 85 l~v~~a~~~~~~~ 97 (103)
T 2cq3_A 85 IEVNNATARVMTN 97 (103)
T ss_dssp CEEEECCSSCCCC
T ss_pred EEEEEcccCCCCC
Confidence 9999999876554
No 53
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.86 E-value=3.5e-21 Score=115.56 Aligned_cols=91 Identities=19% Similarity=0.301 Sum_probs=82.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEE
Q psy13066 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (115)
Q Consensus 9 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i 87 (115)
.+......++|||+|||..+++++|+.+|.+||.|..+.++.++.++.++|||||+|.+.++|.+|+.. ++..|+|+.|
T Consensus 15 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 15 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp CBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 344556678999999999999999999999999999999999988999999999999999999999987 9999999999
Q ss_pred EEEeccCCcccc
Q psy13066 88 ETKRAVPRDVRL 99 (115)
Q Consensus 88 ~v~~a~~~~~~~ 99 (115)
.|.++.++....
T Consensus 95 ~v~~a~~~~~~~ 106 (126)
T 3ex7_B 95 SVDWCFVRGPPK 106 (126)
T ss_dssp EEEESEESSSCC
T ss_pred EEEEecCCCCCC
Confidence 999998766543
No 54
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=3.8e-21 Score=111.84 Aligned_cols=88 Identities=22% Similarity=0.381 Sum_probs=81.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhh-cCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCe-eCCeEEE
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQ-WGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHN-IDGRVVE 88 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~-i~g~~i~ 88 (115)
+..+.++|||+|||..+++++|+.+|.+ ||.|..+.++.++ ++.++|||||+|.+.++|..|+.. ++.. ++|+.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4456789999999999999999999999 9999999999998 999999999999999999999997 8888 9999999
Q ss_pred EEeccCCccccc
Q psy13066 89 TKRAVPRDVRLY 100 (115)
Q Consensus 89 v~~a~~~~~~~~ 100 (115)
|.++.++..+.+
T Consensus 84 v~~a~~~~~~~~ 95 (104)
T 2dhg_A 84 LSVAIPKASRVK 95 (104)
T ss_dssp CCBCCCCCSCCC
T ss_pred EEEccCCCcCCC
Confidence 999988776554
No 55
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=4.8e-21 Score=110.30 Aligned_cols=86 Identities=26% Similarity=0.465 Sum_probs=78.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCC---CCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEE
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPI---TKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v 89 (115)
.+.++|||+|||..+++++|+.+|++||.|..+.+..++. ++.++|||||+|.+.++|.+|+.. ++..++|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4567999999999999999999999999999999998875 558899999999999999999997 899999999999
Q ss_pred EeccCCcccc
Q psy13066 90 KRAVPRDVRL 99 (115)
Q Consensus 90 ~~a~~~~~~~ 99 (115)
.++.++....
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9998876543
No 56
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2e-20 Score=108.65 Aligned_cols=89 Identities=16% Similarity=0.284 Sum_probs=79.5
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEE
Q psy13066 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (115)
Q Consensus 9 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i 87 (115)
...+....++|||+|||..+++++|+.+|.+||.|..+.++.++. .++|||||+|.+.++|..|+.. ++..++|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cqi_A 8 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 85 (103)
T ss_dssp CCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeE
Confidence 445566788999999999999999999999999999999999853 3689999999999999999997 8999999999
Q ss_pred EEEeccCCcccc
Q psy13066 88 ETKRAVPRDVRL 99 (115)
Q Consensus 88 ~v~~a~~~~~~~ 99 (115)
.|.++.++..+.
T Consensus 86 ~V~~a~~~~~~~ 97 (103)
T 2cqi_A 86 KVNWATTPSSQK 97 (103)
T ss_dssp EEEECCCTTCCC
T ss_pred EEEECCCCcccc
Confidence 999999876544
No 57
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.86 E-value=6.8e-21 Score=113.12 Aligned_cols=84 Identities=20% Similarity=0.300 Sum_probs=77.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEE
Q psy13066 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (115)
Q Consensus 10 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~ 88 (115)
..++...++|||+|||..+++++|+.+|.+||.|..+.++.++.++.++|||||+|.+.++|..|+.. ++..++|+.|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34455678999999999999999999999999999999999988999999999999999999999997 89999999999
Q ss_pred EEecc
Q psy13066 89 TKRAV 93 (115)
Q Consensus 89 v~~a~ 93 (115)
|.+++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99864
No 58
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=7e-22 Score=114.94 Aligned_cols=89 Identities=28% Similarity=0.523 Sum_probs=81.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEE
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~ 90 (115)
.+...++|||+|||..+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|..|+.. ++..++|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp SHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred cCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 344568999999999999999999999999999999999988999999999999999999999986 8999999999999
Q ss_pred eccCCccccc
Q psy13066 91 RAVPRDVRLY 100 (115)
Q Consensus 91 ~a~~~~~~~~ 100 (115)
++.++.....
T Consensus 84 ~a~~~~~~~~ 93 (104)
T 1p1t_A 84 NAASEKNKEE 93 (104)
T ss_dssp ETTCTTHHHH
T ss_pred eCCCccchhh
Confidence 9998776543
No 59
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.86 E-value=4.1e-22 Score=115.51 Aligned_cols=85 Identities=14% Similarity=0.209 Sum_probs=78.9
Q ss_pred CCCCCeEEEcCCCC------CCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCC-
Q psy13066 13 PESLRKVFIGGLDY------RTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG- 84 (115)
Q Consensus 13 ~~~~~~l~v~~lp~------~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g- 84 (115)
+...++|||+|||. .+++++|+.+|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+.. ++..++|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34467999999999 999999999999999999999999998899999999999999999999987 9999999
Q ss_pred eEEEEEeccCCcc
Q psy13066 85 RVVETKRAVPRDV 97 (115)
Q Consensus 85 ~~i~v~~a~~~~~ 97 (115)
+.|.|.++.|+..
T Consensus 83 r~l~V~~a~~~~~ 95 (100)
T 3ns6_A 83 HRLFLYTMKDVER 95 (100)
T ss_dssp CBCEEEESHHHHH
T ss_pred eEEEEEECchhhh
Confidence 9999999987654
No 60
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-21 Score=113.39 Aligned_cols=88 Identities=23% Similarity=0.418 Sum_probs=74.5
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCC-CCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeE
Q psy13066 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDP-ITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRV 86 (115)
Q Consensus 8 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~-~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~ 86 (115)
.........++|||+|||..+++++|+.+|+.|| |..+.++.++ .+|+++|||||+|.+.++|.+|+..++..++|+.
T Consensus 11 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~ 89 (100)
T 2j76_E 11 RSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRR 89 (100)
T ss_dssp ---------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBC
T ss_pred CCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeE
Confidence 3444566788999999999999999999999999 9999999987 5899999999999999999999955899999999
Q ss_pred EEEEeccCCc
Q psy13066 87 VETKRAVPRD 96 (115)
Q Consensus 87 i~v~~a~~~~ 96 (115)
|.|.++.++.
T Consensus 90 l~V~~a~~~~ 99 (100)
T 2j76_E 90 IRVDVADQAQ 99 (100)
T ss_dssp CCCEECCCSC
T ss_pred EEEEeccCCC
Confidence 9999998765
No 61
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.85 E-value=1.4e-20 Score=107.71 Aligned_cols=85 Identities=26% Similarity=0.439 Sum_probs=76.5
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEE
Q psy13066 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (115)
Q Consensus 9 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i 87 (115)
.+..+...++|||+|||+.+++++|+.+|.+||.|..+.+..++ ++.++|||||+|.+.++|.+|+.. ++..++|+.|
T Consensus 9 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (95)
T 2ywk_A 9 FPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87 (95)
T ss_dssp ---CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEE
Confidence 34455677899999999999999999999999999999999998 489999999999999999999997 9999999999
Q ss_pred EEEeccC
Q psy13066 88 ETKRAVP 94 (115)
Q Consensus 88 ~v~~a~~ 94 (115)
.|.++..
T Consensus 88 ~V~~a~~ 94 (95)
T 2ywk_A 88 NVSGPSS 94 (95)
T ss_dssp EEECCCC
T ss_pred EEEEcCC
Confidence 9998763
No 62
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.85 E-value=2.2e-20 Score=115.85 Aligned_cols=87 Identities=22% Similarity=0.406 Sum_probs=80.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEe
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~ 91 (115)
....++|||+|||..+++++|+.+|.+||.|..+.++.++.++.++|||||+|.+.++|.+|+.. ++..|+|+.|.|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999998999999999999999999999997 89999999999999
Q ss_pred ccCCcccc
Q psy13066 92 AVPRDVRL 99 (115)
Q Consensus 92 a~~~~~~~ 99 (115)
+.++....
T Consensus 116 a~~~~~~~ 123 (156)
T 1h2v_Z 116 DAGFKEGR 123 (156)
T ss_dssp ESCCCTTC
T ss_pred CCCCCCcC
Confidence 98766543
No 63
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.5e-21 Score=115.32 Aligned_cols=85 Identities=24% Similarity=0.387 Sum_probs=78.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEecc
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAV 93 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~a~ 93 (115)
...++|||+|||..+++++|+.+|..||.|..+.++.++.++.++|||||+|.+.++|..|+..++..|+|+.|.|.++.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 34579999999999999999999999999999999999988999999999999999999999449999999999999998
Q ss_pred CCccc
Q psy13066 94 PRDVR 98 (115)
Q Consensus 94 ~~~~~ 98 (115)
++..+
T Consensus 103 ~~~~~ 107 (114)
T 2cq4_A 103 AEKNR 107 (114)
T ss_dssp HHHHH
T ss_pred CCccC
Confidence 76544
No 64
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.85 E-value=1.6e-20 Score=116.60 Aligned_cols=89 Identities=29% Similarity=0.511 Sum_probs=81.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEE
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v 89 (115)
......++|||+|||..+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|..|+.. ++..++|+.|.|
T Consensus 65 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 144 (158)
T 2kn4_A 65 MDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 144 (158)
T ss_dssp CCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3445678999999999999999999999999999999999988999999999999999999999987 899999999999
Q ss_pred EeccCCcccc
Q psy13066 90 KRAVPRDVRL 99 (115)
Q Consensus 90 ~~a~~~~~~~ 99 (115)
.++.++..+.
T Consensus 145 ~~a~~~~~~~ 154 (158)
T 2kn4_A 145 QMARYGRPPD 154 (158)
T ss_dssp EEECCSSCCC
T ss_pred EECCCCCCCC
Confidence 9999875543
No 65
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2.8e-20 Score=105.80 Aligned_cols=86 Identities=16% Similarity=0.333 Sum_probs=78.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEE
Q psy13066 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVET 89 (115)
Q Consensus 10 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v 89 (115)
...+...++|||+|||..+++++|+.+|..+ .|..+.++.+ .+|.++|||||+|.+.++|..|+..++..++|+.|.|
T Consensus 4 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v 81 (91)
T 2dgw_A 4 GSSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEE
T ss_pred CCCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEE
Confidence 3445677899999999999999999999999 9999999999 5899999999999999999999998889999999999
Q ss_pred EeccCCcc
Q psy13066 90 KRAVPRDV 97 (115)
Q Consensus 90 ~~a~~~~~ 97 (115)
.++.++.+
T Consensus 82 ~~a~~~~~ 89 (91)
T 2dgw_A 82 FREKSGPS 89 (91)
T ss_dssp EEESSCCC
T ss_pred EECCcCCC
Confidence 99987753
No 66
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.85 E-value=2.3e-20 Score=109.01 Aligned_cols=83 Identities=22% Similarity=0.348 Sum_probs=77.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEE
Q psy13066 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (115)
Q Consensus 10 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~ 88 (115)
.....+.++|||+|||..+++++|+.+|.+||.|..+.++.++ +|.++|||||+|.+.++|.+|+.. ++..++|+.|.
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3445667899999999999999999999999999999999998 999999999999999999999997 99999999999
Q ss_pred EEecc
Q psy13066 89 TKRAV 93 (115)
Q Consensus 89 v~~a~ 93 (115)
|.++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99875
No 67
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.85 E-value=1.5e-21 Score=118.12 Aligned_cols=90 Identities=21% Similarity=0.313 Sum_probs=80.9
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeE--EEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCC----
Q psy13066 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVD--VVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPH---- 80 (115)
Q Consensus 8 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~--~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~---- 80 (115)
+.+..+...++|||+|||+.+++++|+.+|.+||.|.. +.++.++.+|.++|||||+|.+. +|.+|+.. ++.
T Consensus 15 ~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~ 93 (131)
T 2m2b_A 15 SEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPL 93 (131)
T ss_dssp CCCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCc
Confidence 34445567789999999999999999999999999976 99999998999999999999999 99999988 888
Q ss_pred eeCCeEEEEEeccCCccc
Q psy13066 81 NIDGRVVETKRAVPRDVR 98 (115)
Q Consensus 81 ~i~g~~i~v~~a~~~~~~ 98 (115)
.++|+.|.|.++.++...
T Consensus 94 ~~~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 94 TIDGKTINVEFAKGSKRD 111 (131)
T ss_dssp CGGGCCCCCEECCCSCCC
T ss_pred cCCCEEEEEEECCCCCCC
Confidence 999999999999886544
No 68
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.85 E-value=4.4e-21 Score=111.29 Aligned_cols=87 Identities=23% Similarity=0.496 Sum_probs=78.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEE
Q psy13066 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVET 89 (115)
Q Consensus 10 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v 89 (115)
+..+...++|||+|||..+++++|+.+|++||.|..+.++.++ +|.++|||||+|.+.++|..|+. ++..++|+.|.|
T Consensus 3 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v 80 (102)
T 2xs2_A 3 PEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKL 80 (102)
T ss_dssp CCCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEE
Confidence 3445567899999999999999999999999999999999998 99999999999999999999999 889999999999
Q ss_pred EeccCCccc
Q psy13066 90 KRAVPRDVR 98 (115)
Q Consensus 90 ~~a~~~~~~ 98 (115)
.++.++...
T Consensus 81 ~~a~~~~~~ 89 (102)
T 2xs2_A 81 GPAIRKQNL 89 (102)
T ss_dssp EEEEECC--
T ss_pred EECCcCcch
Confidence 999876543
No 69
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4e-21 Score=113.69 Aligned_cols=85 Identities=13% Similarity=0.143 Sum_probs=78.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCe-eEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEE
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEI-VDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETK 90 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i-~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~ 90 (115)
.+...++|||+|||..+++++|+.+|..||.+ ..+.++.++ +|.++|||||+|.+.++|..|+..++..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Confidence 45567899999999999999999999999999 889999998 9999999999999999999999889999999999999
Q ss_pred eccCCcc
Q psy13066 91 RAVPRDV 97 (115)
Q Consensus 91 ~a~~~~~ 97 (115)
++.++..
T Consensus 90 ~a~~~~~ 96 (114)
T 2cpy_A 90 VVTLEDM 96 (114)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9987653
No 70
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.5e-20 Score=109.56 Aligned_cols=87 Identities=18% Similarity=0.350 Sum_probs=78.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeE-EEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEE
Q psy13066 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVD-VVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVE 88 (115)
Q Consensus 10 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~ 88 (115)
..+....++|||+|||+.+++++|+.+|.+||.|.. +.++.+ .+|+++|||||+|.+.++|.+|+..++..++|+.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~ 87 (104)
T 1wg5_A 9 SPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIE 87 (104)
T ss_dssp CSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEE
Confidence 344556789999999999999999999999999987 888888 589999999999999999999999988999999999
Q ss_pred EEeccCCcc
Q psy13066 89 TKRAVPRDV 97 (115)
Q Consensus 89 v~~a~~~~~ 97 (115)
|..+.+++.
T Consensus 88 v~~~~~~~~ 96 (104)
T 1wg5_A 88 IFKSSRAEV 96 (104)
T ss_dssp EEEECTTTS
T ss_pred EEECCHHHH
Confidence 999876553
No 71
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=5.6e-20 Score=108.50 Aligned_cols=88 Identities=22% Similarity=0.285 Sum_probs=79.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEE
Q psy13066 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (115)
Q Consensus 10 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~ 88 (115)
.......++|||+|||..+++++|+.+|.+||.|..+.++.++ ++.++|||||+|.+.++|..|+.. ++..++|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 9 LQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 3445567899999999999999999999999999999999997 699999999999999999999997 99999999999
Q ss_pred EEeccCCccc
Q psy13066 89 TKRAVPRDVR 98 (115)
Q Consensus 89 v~~a~~~~~~ 98 (115)
|.++.+...+
T Consensus 88 v~~a~~~~~~ 97 (114)
T 2do0_A 88 VKMDERALPK 97 (114)
T ss_dssp EEECSCCCCC
T ss_pred EEEcccCCCC
Confidence 9998755443
No 72
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=8.4e-21 Score=109.28 Aligned_cols=85 Identities=12% Similarity=0.150 Sum_probs=77.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEE
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~ 90 (115)
.....++|||+|||..+++++|+.+|.+||.|..+.++.++.++.++|||||+|.+.++|.+|+.. ++..++|+.|.|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 445678999999999999999999999999998887888878999999999999999999999977 8899999999999
Q ss_pred eccCCc
Q psy13066 91 RAVPRD 96 (115)
Q Consensus 91 ~a~~~~ 96 (115)
++.++.
T Consensus 91 ~a~~~~ 96 (98)
T 2cqp_A 91 LGSGPS 96 (98)
T ss_dssp ESSCSS
T ss_pred EcCCCC
Confidence 987653
No 73
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.85 E-value=2.3e-20 Score=106.23 Aligned_cols=85 Identities=14% Similarity=0.300 Sum_probs=77.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEE
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~ 90 (115)
...+.++|||+|||..+++++|+.+|.+||.|..+.+..+ ++.++|||||+|.+.++|..|+.. ++..++|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999998885 789999999999999999999997 8999999999999
Q ss_pred eccCCccc
Q psy13066 91 RAVPRDVR 98 (115)
Q Consensus 91 ~a~~~~~~ 98 (115)
++.+....
T Consensus 82 ~a~~~~~~ 89 (92)
T 2dgv_A 82 IDRNASGP 89 (92)
T ss_dssp ECSCCSSC
T ss_pred EcCCCCCC
Confidence 99876543
No 74
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.84 E-value=4.5e-21 Score=105.44 Aligned_cols=75 Identities=40% Similarity=0.760 Sum_probs=71.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEec
Q psy13066 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRA 92 (115)
Q Consensus 18 ~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~a 92 (115)
+|||+|||+.+++++|+.+|++||.|..+.++.++.++.++|||||+|.+.++|++|++.++..++|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 489999999999999999999999999999999988999999999999999999999988899999999999875
No 75
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.84 E-value=2.7e-20 Score=116.54 Aligned_cols=88 Identities=17% Similarity=0.280 Sum_probs=79.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEE
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~ 90 (115)
.....++|||+|||..+++++|+.+|.+||.|..+.++.++.+|.++|||||+|.+.++|..|+.. ++..|+|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345567899999999999999999999999999999999988999999999999999999999987 9999999999999
Q ss_pred eccCCcccc
Q psy13066 91 RAVPRDVRL 99 (115)
Q Consensus 91 ~a~~~~~~~ 99 (115)
++.++..+.
T Consensus 148 ~a~~~~~~~ 156 (165)
T 1rk8_A 148 WCFVKGPKR 156 (165)
T ss_dssp ESEECC---
T ss_pred EecCCCCCC
Confidence 998776544
No 76
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.3e-20 Score=106.64 Aligned_cols=82 Identities=15% Similarity=0.153 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEE
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQ----AFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i 87 (115)
....++|||+|||..+++++|+ .+|++||.|..+.++.++.+ +|||||+|.+.++|.+|+.. ++..++|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 4456799999999999999999 99999999999999988744 78999999999999999997 9999999999
Q ss_pred EEEeccCCcc
Q psy13066 88 ETKRAVPRDV 97 (115)
Q Consensus 88 ~v~~a~~~~~ 97 (115)
.|.++.++..
T Consensus 83 ~V~~a~~~~~ 92 (96)
T 2dgx_A 83 LVSLATGASG 92 (96)
T ss_dssp EEEECCCSSC
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 77
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.4e-20 Score=109.30 Aligned_cols=87 Identities=21% Similarity=0.298 Sum_probs=78.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCC-eeEEEEE-eCCCCCCcccEEEEEEcCHHHHHHHHhc-C--CCeeCCeEE
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGE-IVDVVVM-KDPITKRSRGFGFITYSEAKMVDDAMSN-R--PHNIDGRVV 87 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~-i~~~~~~-~~~~~~~~~g~~fv~f~~~~~a~~al~~-~--~~~i~g~~i 87 (115)
..+.++|||+|||..+++++|+.+|..||. |..+.++ .++.++.++|||||+|.+.++|..|+.. + +..++|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345689999999999999999999999998 9999988 7887889999999999999999999997 4 589999999
Q ss_pred EEEeccCCcccc
Q psy13066 88 ETKRAVPRDVRL 99 (115)
Q Consensus 88 ~v~~a~~~~~~~ 99 (115)
.|.++.++....
T Consensus 85 ~V~~a~~~~~~~ 96 (109)
T 2dis_A 85 AVDWAEPEIDVD 96 (109)
T ss_dssp EEEESCSSCSTT
T ss_pred EEEEcCCCCCcC
Confidence 999999876643
No 78
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=8.2e-20 Score=107.07 Aligned_cols=89 Identities=13% Similarity=0.275 Sum_probs=78.0
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeE
Q psy13066 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (115)
Q Consensus 8 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~ 86 (115)
....++...++|||+|||..+++++|+.+|.+||.|..+.+..+ +.++|||||+|.+.++|..|+.. ++..++|+.
T Consensus 14 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 90 (109)
T 1x4a_A 14 IRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR 90 (109)
T ss_dssp SSCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 34445667789999999999999999999999999999988553 55789999999999999999977 899999999
Q ss_pred EEEEeccCCcccc
Q psy13066 87 VETKRAVPRDVRL 99 (115)
Q Consensus 87 i~v~~a~~~~~~~ 99 (115)
|.|.++.++....
T Consensus 91 l~V~~a~~~~~~~ 103 (109)
T 1x4a_A 91 LRVEFPRSGRGTG 103 (109)
T ss_dssp CEEECCCCCCCCC
T ss_pred EEEEEcccCCCCC
Confidence 9999998876543
No 79
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.1e-20 Score=109.81 Aligned_cols=87 Identities=25% Similarity=0.534 Sum_probs=77.8
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeE
Q psy13066 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (115)
Q Consensus 8 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~ 86 (115)
.........++|||+|||..+++++|+.+|++||.|..+.+..++ +.++|||||+|.+.++|.+|+.. ++..++|+.
T Consensus 21 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 21 MNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp -CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred CCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 344556677899999999999999999999999999999998885 34899999999999999999997 999999999
Q ss_pred EEEEeccCCc
Q psy13066 87 VETKRAVPRD 96 (115)
Q Consensus 87 i~v~~a~~~~ 96 (115)
|.|.++.++.
T Consensus 99 l~V~~a~~~~ 108 (109)
T 2err_A 99 IEVNNATARV 108 (109)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCc
Confidence 9999998763
No 80
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=109.06 Aligned_cols=85 Identities=21% Similarity=0.283 Sum_probs=77.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEE
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETK 90 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~ 90 (115)
..+...++|||+|||+.+++++|+++|.+||. ..+.++.++ +++++|||||+|.+.++|.+|+..++..|+|+.|.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 87 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEE
Confidence 44566789999999999999999999999995 499999998 8999999999999999999999778899999999999
Q ss_pred eccCCcc
Q psy13066 91 RAVPRDV 97 (115)
Q Consensus 91 ~a~~~~~ 97 (115)
.+.+...
T Consensus 88 ~~~~~~~ 94 (102)
T 1wez_A 88 LNSTAGT 94 (102)
T ss_dssp EECCCCC
T ss_pred ECCCCCC
Confidence 9887654
No 81
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.84 E-value=5.4e-21 Score=105.07 Aligned_cols=75 Identities=35% Similarity=0.604 Sum_probs=71.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEec
Q psy13066 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRA 92 (115)
Q Consensus 18 ~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~a 92 (115)
+|||+|||..+++++|+.+|++||.|..+.++.++.++.++|||||+|.+.++|.+|+..++..++|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999988899999999999999999999998888999999999865
No 82
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.84 E-value=7.3e-21 Score=115.71 Aligned_cols=90 Identities=29% Similarity=0.496 Sum_probs=81.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEE
Q psy13066 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (115)
Q Consensus 10 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~ 88 (115)
+.+....++|||+|||..+++++|+.+|++||.|..+.++.++.++.++|||||+|.+.++|.+|+.. ++..++|+.|.
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 44455678999999999999999999999999999999999988999999999999999999999987 89999999999
Q ss_pred EEeccCCcccc
Q psy13066 89 TKRAVPRDVRL 99 (115)
Q Consensus 89 v~~a~~~~~~~ 99 (115)
|.++.++....
T Consensus 121 V~~a~~~~~~~ 131 (135)
T 2lea_A 121 VQMARYGRPPD 131 (135)
T ss_dssp EEECCCCCCCT
T ss_pred EEECCCCCCCc
Confidence 99998765443
No 83
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.8e-20 Score=108.16 Aligned_cols=86 Identities=15% Similarity=0.361 Sum_probs=77.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCee------
Q psy13066 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI------ 82 (115)
Q Consensus 10 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i------ 82 (115)
...+...++|||+|||..+++++|+.+|.+||.|..+.++.++ ++.++|||||+|.+.++|..|+.. ++..+
T Consensus 19 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 19 KQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 3445677899999999999999999999999999999999998 999999999999999999999997 88888
Q ss_pred --CCeEEEEEeccCCc
Q psy13066 83 --DGRVVETKRAVPRD 96 (115)
Q Consensus 83 --~g~~i~v~~a~~~~ 96 (115)
.++.|.|.++.|+.
T Consensus 98 ~~~~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 98 SAPTEPLLCKFSGPSS 113 (114)
T ss_dssp CCCSSCBEEEECCCSC
T ss_pred cCCCCceeEEccCCCC
Confidence 57789999988753
No 84
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.83 E-value=1.8e-20 Score=111.54 Aligned_cols=85 Identities=18% Similarity=0.214 Sum_probs=77.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCC---eeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEE
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGE---IVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVV 87 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i 87 (115)
.+....++|||+|||+.+++++|+.+|..||. |..+.++.++. |+++|||||+|.+.++|.+|+..++..|+|+.|
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i 90 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYI 90 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEE
Confidence 34556789999999999999999999999998 89999999984 999999999999999999999988999999999
Q ss_pred EEEeccCCc
Q psy13066 88 ETKRAVPRD 96 (115)
Q Consensus 88 ~v~~a~~~~ 96 (115)
.|.++.+++
T Consensus 91 ~V~~a~~~~ 99 (118)
T 2db1_A 91 EVFKSHRTE 99 (118)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999987654
No 85
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.83 E-value=6.8e-20 Score=109.72 Aligned_cols=87 Identities=21% Similarity=0.311 Sum_probs=79.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEE
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~ 90 (115)
.....++|||+|||..+++++|+.+|+.||.|..+.+..++ +|.++|||||+|.+.++|..|+.. ++..++|+.|.|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34566899999999999999999999999999999999998 999999999999999999999997 8999999999999
Q ss_pred eccCCcccc
Q psy13066 91 RAVPRDVRL 99 (115)
Q Consensus 91 ~a~~~~~~~ 99 (115)
+|.+.....
T Consensus 110 ~a~~~~~~~ 118 (124)
T 2kt5_A 110 LVASQIDLE 118 (124)
T ss_dssp EECCTTCCC
T ss_pred EeCCCCCCC
Confidence 998765543
No 86
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.83 E-value=3.2e-20 Score=108.33 Aligned_cols=88 Identities=13% Similarity=0.198 Sum_probs=77.1
Q ss_pred CCCCCCCCCCeEEEcCCCCCC------CHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCC
Q psy13066 8 SKCTEPESLRKVFIGGLDYRT------TDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPH 80 (115)
Q Consensus 8 ~~~~~~~~~~~l~v~~lp~~~------~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~ 80 (115)
.+..+....++|||+|||..+ ++++|+.+|++||.|..+.++ +.+|.++|||||+|.+.++|..|+.. ++.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~ 84 (105)
T 2nlw_A 7 RPQEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGY 84 (105)
T ss_dssp CCCSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSE
T ss_pred CCCCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCc
Confidence 344455567899999999999 789999999999999999887 35899999999999999999999997 899
Q ss_pred eeCCe-EEEEEeccCCcc
Q psy13066 81 NIDGR-VVETKRAVPRDV 97 (115)
Q Consensus 81 ~i~g~-~i~v~~a~~~~~ 97 (115)
.++|+ .|.|.++.+...
T Consensus 85 ~~~g~~~l~V~~a~~~~k 102 (105)
T 2nlw_A 85 KLDKQHTFRVNLFTDFDK 102 (105)
T ss_dssp ECSTTCEEEEECSCCCCC
T ss_pred ccCCCceEEEEEcchHhh
Confidence 99998 999999876543
No 87
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.83 E-value=5.4e-20 Score=110.07 Aligned_cols=83 Identities=24% Similarity=0.494 Sum_probs=77.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEeccC
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~a~~ 94 (115)
..++|||+|||..+++++|+.+|++||.|..+.++.++.++.++|||||+|.+.++|..|+..++..++|+.|.|.++.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 35899999999999999999999999999999999998899999999999999999999995589999999999999986
Q ss_pred Ccc
Q psy13066 95 RDV 97 (115)
Q Consensus 95 ~~~ 97 (115)
...
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 88
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.83 E-value=4.9e-20 Score=112.14 Aligned_cols=82 Identities=28% Similarity=0.500 Sum_probs=75.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEE
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v 89 (115)
....+.++|||+|||..+++++|+.+|.+||.|..+.++.++.++.++|||||+|.+.++|.+|+.. ++..++|+.|.|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3455678999999999999999999999999999999999988999999999999999999999987 899999999999
Q ss_pred Eec
Q psy13066 90 KRA 92 (115)
Q Consensus 90 ~~a 92 (115)
.+|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 875
No 89
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.83 E-value=2.3e-21 Score=112.26 Aligned_cols=89 Identities=19% Similarity=0.294 Sum_probs=77.7
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEE
Q psy13066 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVE 88 (115)
Q Consensus 9 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~ 88 (115)
........++|||+|||..+++++|+.+|..||.+.. .++.++.++.++|||||+|.+.++|.+|+..++..++|+.|.
T Consensus 10 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~ 88 (101)
T 1fj7_A 10 EGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIK 88 (101)
T ss_dssp CSTTCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCE
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEE
Confidence 3344556789999999999999999999999998877 556665678999999999999999999998788999999999
Q ss_pred EEeccCCccc
Q psy13066 89 TKRAVPRDVR 98 (115)
Q Consensus 89 v~~a~~~~~~ 98 (115)
|.++.++..+
T Consensus 89 V~~a~~~~~~ 98 (101)
T 1fj7_A 89 LEKPKGRDGT 98 (101)
T ss_dssp EECCSCCCCS
T ss_pred EEEcCCCCCC
Confidence 9999987654
No 90
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=9.7e-21 Score=104.48 Aligned_cols=77 Identities=44% Similarity=0.879 Sum_probs=72.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEecc
Q psy13066 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAV 93 (115)
Q Consensus 17 ~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~a~ 93 (115)
++|||+|||..+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+...+..++|+.|.|.+|.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~ 77 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 77 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEecC
Confidence 47999999999999999999999999999999999888999999999999999999999994489999999998863
No 91
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.83 E-value=1.3e-20 Score=107.93 Aligned_cols=82 Identities=12% Similarity=0.182 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEe
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~ 91 (115)
....++|||+|||..+++++|+.+|.+||.|..+.++.++.++.++|||||+|.+.++|.+|+.. ++..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34568999999999999999999999999999888888888999999999999999999999997 99999999999998
Q ss_pred ccC
Q psy13066 92 AVP 94 (115)
Q Consensus 92 a~~ 94 (115)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 754
No 92
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.4e-20 Score=107.58 Aligned_cols=82 Identities=11% Similarity=0.238 Sum_probs=73.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-C--CCeeCCeEEE
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R--PHNIDGRVVE 88 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~--~~~i~g~~i~ 88 (115)
.+.+.++|||+|||+.+++++|+.+|++||.|..+.++.+ +|||||+|.+.++|..|+.. + +..++|+.|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4557789999999999999999999999999999998865 59999999999999999985 4 5789999999
Q ss_pred EEeccCCcccc
Q psy13066 89 TKRAVPRDVRL 99 (115)
Q Consensus 89 v~~a~~~~~~~ 99 (115)
|.++.++....
T Consensus 86 V~~A~~~~~~~ 96 (105)
T 1sjq_A 86 IQFSNHKELKT 96 (105)
T ss_dssp BCCCSSSSCCC
T ss_pred EEEcCCCCCCc
Confidence 99998876544
No 93
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.83 E-value=5e-21 Score=108.66 Aligned_cols=82 Identities=29% Similarity=0.629 Sum_probs=72.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEeccCC
Q psy13066 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPR 95 (115)
Q Consensus 17 ~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~~~ 95 (115)
++|||+|||..+++++|+.+|++||.|..+.+..++.+|.++|||||+|.+.+ |..|+.. ++..++|+.|.|.+|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999888999999999999999 9999998 899999999999999876
Q ss_pred cccc
Q psy13066 96 DVRL 99 (115)
Q Consensus 96 ~~~~ 99 (115)
....
T Consensus 81 ~~~~ 84 (90)
T 2ki2_A 81 KSLE 84 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 5443
No 94
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4.6e-20 Score=108.62 Aligned_cols=86 Identities=20% Similarity=0.320 Sum_probs=77.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH---HHhhhcCCeeEEEEEeCCCCC---CcccEEEEEEcCHHHHHHHHhc-CCCeeC
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQ---AFFEQWGEIVDVVVMKDPITK---RSRGFGFITYSEAKMVDDAMSN-RPHNID 83 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~---~~f~~~G~i~~~~~~~~~~~~---~~~g~~fv~f~~~~~a~~al~~-~~~~i~ 83 (115)
......++|||+|||+.+++++|+ .+|.+||.|..+.++.++.++ .++|||||+|.+.++|.+|+.. ++..++
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 345567899999999999999999 999999999999999887543 5569999999999999999998 999999
Q ss_pred CeEEEEEeccCCc
Q psy13066 84 GRVVETKRAVPRD 96 (115)
Q Consensus 84 g~~i~v~~a~~~~ 96 (115)
|+.|.|.++.++.
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999999876
No 95
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.2e-19 Score=105.18 Aligned_cols=89 Identities=25% Similarity=0.384 Sum_probs=78.9
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeE
Q psy13066 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (115)
Q Consensus 8 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~ 86 (115)
.+...+...++|||+|||..+++++|+.+|..++ .+.++.++.++.++|||||+|.+.++|..|+.. ++..|+|+.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2fc8_A 7 GPNARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNK 83 (102)
T ss_dssp TTSSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 3445566788999999999999999999999773 677888888999999999999999999999997 999999999
Q ss_pred EEEEeccCCcccc
Q psy13066 87 VETKRAVPRDVRL 99 (115)
Q Consensus 87 i~v~~a~~~~~~~ 99 (115)
|.|.++.++..+.
T Consensus 84 l~V~~a~~~~~~~ 96 (102)
T 2fc8_A 84 VTLDWAKPKGEGG 96 (102)
T ss_dssp CEEEECCCCCSSS
T ss_pred EEEEEecCCCCCC
Confidence 9999999887654
No 96
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.6e-21 Score=107.39 Aligned_cols=81 Identities=20% Similarity=0.468 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEe
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~ 91 (115)
+.+.++|||+|||..+++++|+.+|++||.|..+.++.++.++.++|||||+|.+.++|..|+.. ++..++|+.+++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 34678999999999999999999999999999999999988999999999999999999999997 88889999888766
Q ss_pred cc
Q psy13066 92 AV 93 (115)
Q Consensus 92 a~ 93 (115)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 97
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.83 E-value=2.2e-20 Score=113.71 Aligned_cols=85 Identities=18% Similarity=0.201 Sum_probs=77.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCC---eeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEE
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGE---IVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVV 87 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i 87 (115)
.+....++|||+|||+++++++|+.+|+++|. |..+.++.++. |+++|||||+|.+.++|.+|+..++..|+|+.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEE
Confidence 34456789999999999999999999999998 88999999985 999999999999999999999988899999999
Q ss_pred EEEeccCCc
Q psy13066 88 ETKRAVPRD 96 (115)
Q Consensus 88 ~v~~a~~~~ 96 (115)
.|..+.+++
T Consensus 118 ~V~~a~~~e 126 (136)
T 2hgl_A 118 EVFKSHRTE 126 (136)
T ss_dssp EEEECCHHH
T ss_pred EEEECChHH
Confidence 999987654
No 98
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-20 Score=113.15 Aligned_cols=85 Identities=14% Similarity=0.315 Sum_probs=76.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEe
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKR 91 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~ 91 (115)
.....++|||+|||+.+++++|+.+|..||.|..+.++.+..+|.++|||||+|.+.++|..|+..++..|+|+.|.|.+
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEE
Confidence 34566899999999999999999999999999886555555699999999999999999999999889999999999999
Q ss_pred ccCCc
Q psy13066 92 AVPRD 96 (115)
Q Consensus 92 a~~~~ 96 (115)
+.++.
T Consensus 101 a~~~~ 105 (124)
T 1wel_A 101 ITKKG 105 (124)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 98765
No 99
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=105.00 Aligned_cols=86 Identities=24% Similarity=0.427 Sum_probs=75.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEE
Q psy13066 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (115)
Q Consensus 10 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~ 88 (115)
...+...++|||+|||..+++++|+.+|.+||.| .++.+ .++.++|||||+|.+.++|.+|+.. ++..++|+.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 9 STWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp CCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 3455678899999999999999999999999977 45555 4889999999999999999999996 89999999999
Q ss_pred EEeccCCcccc
Q psy13066 89 TKRAVPRDVRL 99 (115)
Q Consensus 89 v~~a~~~~~~~ 99 (115)
|.++.++....
T Consensus 85 v~~a~~~~~~~ 95 (101)
T 2fc9_A 85 LELQGPRGSPN 95 (101)
T ss_dssp EEECSSCCCCC
T ss_pred EEEcCCCCCCC
Confidence 99999876543
No 100
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.82 E-value=2e-19 Score=114.49 Aligned_cols=88 Identities=27% Similarity=0.593 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEec
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRA 92 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~a 92 (115)
....++|||+|||..+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+..++..++|+.|.|.++
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEEC
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEec
Confidence 34568999999999999999999999999999999999988999999999999999999999988889999999999999
Q ss_pred cCCccccc
Q psy13066 93 VPRDVRLY 100 (115)
Q Consensus 93 ~~~~~~~~ 100 (115)
.++.+...
T Consensus 181 ~~k~~~~~ 188 (196)
T 1l3k_A 181 LSKQEMAS 188 (196)
T ss_dssp C-------
T ss_pred CChhHhcc
Confidence 99887654
No 101
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=110.57 Aligned_cols=86 Identities=19% Similarity=0.201 Sum_probs=78.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCC---eeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeE
Q psy13066 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGE---IVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRV 86 (115)
Q Consensus 10 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~ 86 (115)
..+....++|||+|||+.+++++|+.+|..+|. |..+.++.++. |+++|||||+|.+.++|..|+..++..++|+.
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 83 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRY 83 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSC
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeE
Confidence 445567889999999999999999999999987 89999999985 99999999999999999999998888999999
Q ss_pred EEEEeccCCc
Q psy13066 87 VETKRAVPRD 96 (115)
Q Consensus 87 i~v~~a~~~~ 96 (115)
|.|.++.++.
T Consensus 84 i~V~~a~~~~ 93 (107)
T 2lmi_A 84 VEVYEINNED 93 (107)
T ss_dssp CCCEECCHHH
T ss_pred EEEEECCHHH
Confidence 9999988754
No 102
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=109.22 Aligned_cols=86 Identities=17% Similarity=0.278 Sum_probs=74.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH----HHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCe
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQ----AFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR 85 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~ 85 (115)
.+..+.++|||+|||+.+++++|+ .+|++||.|..+.+.. +++++|||||+|.+.++|..|+.. ++..+.|+
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 344567899999999999999876 6899999999887643 678899999999999999999988 89999999
Q ss_pred EEEEEeccCCcccc
Q psy13066 86 VVETKRAVPRDVRL 99 (115)
Q Consensus 86 ~i~v~~a~~~~~~~ 99 (115)
.|.|.++.++....
T Consensus 101 ~l~V~~a~~~~~~~ 114 (127)
T 2a3j_A 101 PLVITFSETPQSQV 114 (127)
T ss_dssp CCEEEECCCCCHHH
T ss_pred EEEEEEccCcchhc
Confidence 99999999876543
No 103
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=108.11 Aligned_cols=87 Identities=10% Similarity=0.213 Sum_probs=75.5
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-C--CCeeCC
Q psy13066 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R--PHNIDG 84 (115)
Q Consensus 8 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~--~~~i~g 84 (115)
.......+.++|||+|||+.+++++|+.+|++||.|..+.++.+ +|||||+|.+.++|.+|+.. + +..++|
T Consensus 23 ~~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G 96 (119)
T 2ad9_A 23 DSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 96 (119)
T ss_dssp CTTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred cccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 33444556789999999999999999999999999999998875 59999999999999999986 4 578999
Q ss_pred eEEEEEeccCCccccc
Q psy13066 85 RVVETKRAVPRDVRLY 100 (115)
Q Consensus 85 ~~i~v~~a~~~~~~~~ 100 (115)
+.|.|.++.++.....
T Consensus 97 r~l~V~~a~~k~~~~~ 112 (119)
T 2ad9_A 97 QPIYIQFSNHKELKTD 112 (119)
T ss_dssp BCCEEEECSSSSCCCC
T ss_pred eEEEEEEccCCCCCcc
Confidence 9999999998776543
No 104
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.9e-20 Score=109.90 Aligned_cols=88 Identities=19% Similarity=0.292 Sum_probs=74.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEE
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~ 90 (115)
...+.++|||+|||..+++++|+.+|..||.|..+.+..+..++.++|||||+|.+.++|..|+.. ++..++|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 344668999999999999999999999999884332222222788999999999999999999987 8999999999999
Q ss_pred eccCCcccc
Q psy13066 91 RAVPRDVRL 99 (115)
Q Consensus 91 ~a~~~~~~~ 99 (115)
++.++..+.
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpx_A 101 FGKNKKQRS 109 (115)
T ss_dssp ECCCCSCCC
T ss_pred EccCCCCCC
Confidence 999877654
No 105
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=2.9e-19 Score=101.42 Aligned_cols=80 Identities=20% Similarity=0.517 Sum_probs=72.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEE
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~ 90 (115)
.+.+.++|||+|||..+++++|+.+|.+||.|..+.+. +|||||+|.+.++|..|+.. ++..++|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 35567899999999999999999999999999999886 57999999999999999987 8999999999999
Q ss_pred eccCCcccc
Q psy13066 91 RAVPRDVRL 99 (115)
Q Consensus 91 ~a~~~~~~~ 99 (115)
++.++....
T Consensus 76 ~a~~~~~~~ 84 (90)
T 2dnq_A 76 ASKNKSKAS 84 (90)
T ss_dssp CSSCCCCCC
T ss_pred ECCCCCCCC
Confidence 999876644
No 106
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.82 E-value=1e-19 Score=119.35 Aligned_cols=81 Identities=19% Similarity=0.344 Sum_probs=75.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcC--CeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEe
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWG--EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~ 91 (115)
..++|||+|||..+++++|+.+|.+|| .|..+.++.++.+++++|||||+|.+.++|.+||.. ++..|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999998999999999999999999999997 89999999999999
Q ss_pred ccCC
Q psy13066 92 AVPR 95 (115)
Q Consensus 92 a~~~ 95 (115)
+.++
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8754
No 107
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.4e-19 Score=102.92 Aligned_cols=83 Identities=10% Similarity=0.208 Sum_probs=72.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc---CCCeeCCeEE
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN---RPHNIDGRVV 87 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~---~~~~i~g~~i 87 (115)
....+.++|||+|||..+++++|+.+|.+||.|..+.++.+ +|||||+|.+.++|..|+.. ++..++|+.|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 33456789999999999999999999999999999988764 69999999999999999985 4778999999
Q ss_pred EEEeccCCcccc
Q psy13066 88 ETKRAVPRDVRL 99 (115)
Q Consensus 88 ~v~~a~~~~~~~ 99 (115)
.|.++.++....
T Consensus 84 ~V~~a~~~~~~~ 95 (101)
T 2cq1_A 84 YIQYSNHKELKT 95 (101)
T ss_dssp EEEECSCSSCCC
T ss_pred EEEEcCcccCcC
Confidence 999999766543
No 108
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=6.8e-20 Score=107.70 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=73.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEeccC
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~a~~ 94 (115)
..++|||+|||+.+++++|+.+|..+ .|..+.++.++ +|+++|||||+|.+.++|.+|+..++..|+|+.|.|..+.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 45799999999999999999999999 89999999997 59999999999999999999997789999999999998875
Q ss_pred C
Q psy13066 95 R 95 (115)
Q Consensus 95 ~ 95 (115)
+
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 109
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.81 E-value=2.4e-19 Score=105.15 Aligned_cols=81 Identities=17% Similarity=0.351 Sum_probs=71.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEE
Q psy13066 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (115)
Q Consensus 10 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~ 88 (115)
...+...++|||+|||..+++++|+.+|++||.|..+.+. +|||||+|.+.++|..|+.. ++..++|+.|.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3445667899999999999999999999999999999886 68999999999999999997 99999999999
Q ss_pred EEeccCCccc
Q psy13066 89 TKRAVPRDVR 98 (115)
Q Consensus 89 v~~a~~~~~~ 98 (115)
|.++.++..+
T Consensus 97 V~~a~~~~~r 106 (108)
T 2jvo_A 97 VVYSKLPAKR 106 (108)
T ss_dssp EESCSCCC--
T ss_pred EEEecCCCCC
Confidence 9999987654
No 110
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.81 E-value=5e-20 Score=110.73 Aligned_cols=84 Identities=21% Similarity=0.408 Sum_probs=75.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCee--EEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEE
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIV--DVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVE 88 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~--~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~ 88 (115)
.+....++|||+|||+.+++++|+.+|+.| .|. .+.++.++. |+++|||||+|.+.++|.+|+..++..|+|+.|.
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~ 114 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIE 114 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEE
Confidence 344567899999999999999999999999 566 899999985 9999999999999999999999877999999999
Q ss_pred EEeccCCc
Q psy13066 89 TKRAVPRD 96 (115)
Q Consensus 89 v~~a~~~~ 96 (115)
|..+.+++
T Consensus 115 V~~a~~~e 122 (126)
T 2hgm_A 115 VFKSSQEE 122 (126)
T ss_dssp CEEECHHH
T ss_pred EEECCHHH
Confidence 99887543
No 111
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.81 E-value=8.6e-20 Score=104.67 Aligned_cols=86 Identities=20% Similarity=0.324 Sum_probs=75.2
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeE
Q psy13066 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (115)
Q Consensus 8 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~ 86 (115)
.......+.++|||+|||..+++++|+.+|..||.|..+ ..++.++|||||+|.+.++|..|+.. ++..++|+.
T Consensus 8 ~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 82 (96)
T 1fjc_A 8 CTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 82 (96)
T ss_dssp TTTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE
T ss_pred cccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 344455678899999999999999999999999988766 23788999999999999999999997 899999999
Q ss_pred EEEEeccCCccc
Q psy13066 87 VETKRAVPRDVR 98 (115)
Q Consensus 87 i~v~~a~~~~~~ 98 (115)
|.|.++.++...
T Consensus 83 l~v~~a~~~~~~ 94 (96)
T 1fjc_A 83 VSLYYTGEKGGT 94 (96)
T ss_dssp EEEEECSSSCCC
T ss_pred EEEEEcCCCCCC
Confidence 999999887643
No 112
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.81 E-value=3.8e-19 Score=115.22 Aligned_cols=85 Identities=21% Similarity=0.379 Sum_probs=77.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEe
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~ 91 (115)
..+.++|||+|||+.+++++|+.+|++||.|..+.+++++.+++++|||||+|.+.++|..|+.. ++..+.|+.|.+.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 44567999999999999999999999999999999999998999999999999999999999988 89999999999998
Q ss_pred ccCCcc
Q psy13066 92 AVPRDV 97 (115)
Q Consensus 92 a~~~~~ 97 (115)
+.+...
T Consensus 92 ~~~~~~ 97 (213)
T 4f02_A 92 SQRDPS 97 (213)
T ss_dssp CCCCTH
T ss_pred cccccc
Confidence 876543
No 113
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=4e-19 Score=102.64 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=69.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCC--eeCCeEEEE
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPH--NIDGRVVET 89 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~--~i~g~~i~v 89 (115)
..+.++|||+|||..+++++|+.+|++||.|..+.+++ .+|+|||+|.+.++|..|+.. ++. .+.|+.|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 44678999999999999999999999999999998875 358999999999999999987 543 589999999
Q ss_pred EeccCCc
Q psy13066 90 KRAVPRD 96 (115)
Q Consensus 90 ~~a~~~~ 96 (115)
.+|++++
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998764
No 114
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=8.7e-19 Score=102.64 Aligned_cols=81 Identities=17% Similarity=0.274 Sum_probs=73.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCC-----e
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG-----R 85 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g-----~ 85 (115)
.....++|||+|||..+++++|+.+|.+||.|..+.++.+ |||||+|.+.++|..|+.. ++..|+| +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3456789999999999999999999999999999998776 8999999999999999997 8999999 9
Q ss_pred EEEEEeccCCcccc
Q psy13066 86 VVETKRAVPRDVRL 99 (115)
Q Consensus 86 ~i~v~~a~~~~~~~ 99 (115)
.|.|.++.++....
T Consensus 84 ~i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 84 YIRVKVDGPRSPSY 97 (108)
T ss_dssp EEEEEESSCCSCCC
T ss_pred EEEEEeCCCCCCCC
Confidence 99999999876543
No 115
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=6.7e-20 Score=109.81 Aligned_cols=82 Identities=23% Similarity=0.377 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCe----eEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEE
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEI----VDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVET 89 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i----~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v 89 (115)
...++|||+|||+.+++++|+.+|.+||.| ..+.++.++ +|+++|||||+|.+.++|.+|+..++..++|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 456799999999999999999999999875 689999985 899999999999999999999998889999999999
Q ss_pred EeccCCc
Q psy13066 90 KRAVPRD 96 (115)
Q Consensus 90 ~~a~~~~ 96 (115)
..+.+++
T Consensus 100 ~~a~~~e 106 (123)
T 2dha_A 100 FRSTAAE 106 (123)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9887654
No 116
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.7e-19 Score=101.82 Aligned_cols=80 Identities=20% Similarity=0.365 Sum_probs=72.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeC--CeEEE
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID--GRVVE 88 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~--g~~i~ 88 (115)
...+.++|||+|||..+++++|+.+|++||.|..+.+..+ +|||||+|.+.++|.+|+.. ++..++ |+.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3456689999999999999999999999999999987653 68999999999999999997 899999 99999
Q ss_pred EEeccCCcc
Q psy13066 89 TKRAVPRDV 97 (115)
Q Consensus 89 v~~a~~~~~ 97 (115)
|.++.++..
T Consensus 87 V~~a~~~~~ 95 (97)
T 1why_A 87 VDFAKSGPS 95 (97)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCCC
Confidence 999998754
No 117
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=2.2e-21 Score=115.05 Aligned_cols=89 Identities=19% Similarity=0.270 Sum_probs=81.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeE--------EEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCee
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVD--------VVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI 82 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i 82 (115)
+..+.++|||+|||..+++++|+.+|++||.|.. +.++.++.++.++|||||+|.+.++|..|+.. ++..+
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4556789999999999999999999999999998 88999888899999999999999999999997 89999
Q ss_pred CCeEEEEEeccCCccccc
Q psy13066 83 DGRVVETKRAVPRDVRLY 100 (115)
Q Consensus 83 ~g~~i~v~~a~~~~~~~~ 100 (115)
+|+.|.|.++.++..+.+
T Consensus 83 ~g~~l~V~~a~~~~~~~~ 100 (116)
T 2lcw_A 83 SGNPIKVSFATRRADFNR 100 (116)
Confidence 999999999998776543
No 118
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.80 E-value=4.9e-19 Score=99.50 Aligned_cols=74 Identities=11% Similarity=0.158 Sum_probs=68.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEec
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a 92 (115)
.....|||+||++.+++++|+.+|.+||+|..+++.. ++|||||+|.+.++|..|+.. |+..+.|+.|+|..|
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3567899999999999999999999999999999865 579999999999999999999 999999999999988
Q ss_pred c
Q psy13066 93 V 93 (115)
Q Consensus 93 ~ 93 (115)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 119
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.4e-19 Score=103.00 Aligned_cols=82 Identities=21% Similarity=0.416 Sum_probs=74.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEE
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~ 90 (115)
++...++|||+|||..+++++|+.+|.+||.|..+.+..+ +|||||+|.+.++|..|+.. ++..++|+.|.|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4556789999999999999999999999999999998876 68999999999999999987 9999999999999
Q ss_pred eccCCcccc
Q psy13066 91 RAVPRDVRL 99 (115)
Q Consensus 91 ~a~~~~~~~ 99 (115)
++.++....
T Consensus 95 ~a~~~~~~~ 103 (109)
T 1x4g_A 95 WGKESPDMT 103 (109)
T ss_dssp CCCCCCSSC
T ss_pred ecCCCCCCC
Confidence 999876544
No 120
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.80 E-value=1e-18 Score=108.34 Aligned_cols=82 Identities=23% Similarity=0.447 Sum_probs=77.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEeccC
Q psy13066 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVP 94 (115)
Q Consensus 16 ~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~~ 94 (115)
.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+.. ++..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999999999999999999999999999988999999999999999999999987 99999999999999987
Q ss_pred Ccc
Q psy13066 95 RDV 97 (115)
Q Consensus 95 ~~~ 97 (115)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 654
No 121
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5.6e-19 Score=101.55 Aligned_cols=82 Identities=13% Similarity=0.212 Sum_probs=71.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEE
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v 89 (115)
.+....++|||+|||..+++++|+.+|.+||.|. +.++. +.++|||||+|.+.++|..|+.. ++..++|+.|.|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3445578999999999999999999999999986 55554 35789999999999999999988 999999999999
Q ss_pred EeccCCcc
Q psy13066 90 KRAVPRDV 97 (115)
Q Consensus 90 ~~a~~~~~ 97 (115)
.++.++..
T Consensus 89 ~~a~~~~~ 96 (97)
T 2e5j_A 89 ALARQQRD 96 (97)
T ss_dssp EECCCCCC
T ss_pred EEcCCCCC
Confidence 99988653
No 122
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.80 E-value=1.3e-19 Score=104.04 Aligned_cols=84 Identities=19% Similarity=0.414 Sum_probs=74.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeE
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQ----AFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~ 86 (115)
+..+.++|||+|||..+++++|+ .+|.+||.|..+.+.. +|.++|||||+|.+.++|..|+.. ++..++|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 34567899999999999999999 9999999999988763 577889999999999999999997 999999999
Q ss_pred EEEEeccCCccc
Q psy13066 87 VETKRAVPRDVR 98 (115)
Q Consensus 87 i~v~~a~~~~~~ 98 (115)
|.|.++.++...
T Consensus 81 l~v~~a~~~~~~ 92 (97)
T 1nu4_A 81 MRIQYAKTDSDI 92 (97)
T ss_dssp CEEEECSSCCTH
T ss_pred EEEEEccCCCcc
Confidence 999999987643
No 123
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.1e-18 Score=99.35 Aligned_cols=83 Identities=17% Similarity=0.365 Sum_probs=73.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEE
Q psy13066 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (115)
Q Consensus 9 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i 87 (115)
....+...++|||+|||..+++++|+.+|++||.|..+.+.+ +||||+|.+.++|.+|+.. ++..++|+.|
T Consensus 3 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 74 (92)
T 2dgt_A 3 SGSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRM 74 (92)
T ss_dssp CSCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 344566788999999999999999999999999999998863 4999999999999999987 9999999999
Q ss_pred EEEeccCCcccc
Q psy13066 88 ETKRAVPRDVRL 99 (115)
Q Consensus 88 ~v~~a~~~~~~~ 99 (115)
.|.++.++....
T Consensus 75 ~V~~a~~~~~~~ 86 (92)
T 2dgt_A 75 HVQLSTSRLRTA 86 (92)
T ss_dssp EEEESSCCCSCC
T ss_pred EEEEccCCCCCC
Confidence 999998876543
No 124
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.5e-18 Score=107.55 Aligned_cols=84 Identities=25% Similarity=0.495 Sum_probs=78.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEE
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v 89 (115)
......++|||+|||..+++++|+.+|++||.|..+.+..++.+|.++|+|||+|.+.++|.+|+.. ++..++|+.|.|
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 3455678999999999999999999999999999999999988999999999999999999999997 999999999999
Q ss_pred EeccC
Q psy13066 90 KRAVP 94 (115)
Q Consensus 90 ~~a~~ 94 (115)
.+|.+
T Consensus 162 ~~a~~ 166 (166)
T 3md3_A 162 NWAAK 166 (166)
T ss_dssp EESCC
T ss_pred EecCC
Confidence 99863
No 125
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.80 E-value=4.1e-19 Score=104.95 Aligned_cols=83 Identities=22% Similarity=0.376 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEe
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~ 91 (115)
+...++|||+|||..+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|..|+.. ++..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 445679999999999999999999999999999998875 45589999999999999999997 99999999999999
Q ss_pred ccCCccc
Q psy13066 92 AVPRDVR 98 (115)
Q Consensus 92 a~~~~~~ 98 (115)
+.++...
T Consensus 82 a~~~~~~ 88 (115)
T 3lqv_A 82 YNANRAF 88 (115)
T ss_dssp CCHHHHT
T ss_pred ecCChhh
Confidence 9875443
No 126
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=4.3e-19 Score=102.63 Aligned_cols=78 Identities=22% Similarity=0.391 Sum_probs=70.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEE
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~ 90 (115)
.+...++|||+|||..+++++|+.+|.+||.|..+.+. .++|||||+|.+.++|..|+.. ++..++|+.|.|.
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34456899999999999999999999999999999887 3569999999999999999988 9999999999999
Q ss_pred eccCC
Q psy13066 91 RAVPR 95 (115)
Q Consensus 91 ~a~~~ 95 (115)
++.++
T Consensus 97 ~a~~~ 101 (101)
T 2la4_A 97 WGKER 101 (101)
T ss_dssp BCCCC
T ss_pred eccCC
Confidence 98864
No 127
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.80 E-value=1.5e-18 Score=99.95 Aligned_cols=80 Identities=21% Similarity=0.389 Sum_probs=70.0
Q ss_pred CCCCCCCCCeEEEcCCCC-CCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeE
Q psy13066 9 KCTEPESLRKVFIGGLDY-RTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (115)
Q Consensus 9 ~~~~~~~~~~l~v~~lp~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~ 86 (115)
........++|||+|||. .+++++|+.+|++||.|..+.+. +|||||+|.+.++|.+|+.. ++..++|+.
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (97)
T 2xnq_A 15 VPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKK 86 (97)
T ss_dssp ----CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEE
T ss_pred ccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 334455678999999998 99999999999999999999872 68999999999999999997 899999999
Q ss_pred EEEEeccCCc
Q psy13066 87 VETKRAVPRD 96 (115)
Q Consensus 87 i~v~~a~~~~ 96 (115)
|.|.++.++.
T Consensus 87 l~V~~a~~~~ 96 (97)
T 2xnq_A 87 LILEVSSSNA 96 (97)
T ss_dssp CEEEECCCCC
T ss_pred EEEEecCCCC
Confidence 9999998754
No 128
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.80 E-value=1.2e-18 Score=101.15 Aligned_cols=83 Identities=23% Similarity=0.409 Sum_probs=73.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEE
Q psy13066 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (115)
Q Consensus 10 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~ 88 (115)
+....+.++|||+|||..+++++|+.+|.+||.|..+.++ ++||||+|.+.++|.+|+.. ++..++|+.|.
T Consensus 5 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 76 (103)
T 2dgu_A 5 SSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIE 76 (103)
T ss_dssp CCCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEE
Confidence 3344567899999999999999999999999999999875 45999999999999999997 89999999999
Q ss_pred EEeccCCccccc
Q psy13066 89 TKRAVPRDVRLY 100 (115)
Q Consensus 89 v~~a~~~~~~~~ 100 (115)
|.++.++.....
T Consensus 77 v~~a~~~~~~~~ 88 (103)
T 2dgu_A 77 IVFAKPPDQKRK 88 (103)
T ss_dssp EEECCCCCCCCC
T ss_pred EEEcCCCcccch
Confidence 999988776543
No 129
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=7.7e-19 Score=101.27 Aligned_cols=82 Identities=23% Similarity=0.436 Sum_probs=73.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEE
Q psy13066 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (115)
Q Consensus 10 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~ 88 (115)
.....+.++|||+|||..+++++|+.+|.+||.|..+.+..+ +|||||+|.+.++|.+|+.. ++..++|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 82 (99)
T 2cpj_A 9 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLR 82 (99)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEE
Confidence 344556789999999999999999999999999999988754 58999999999999999988 89999999999
Q ss_pred EEeccCCcc
Q psy13066 89 TKRAVPRDV 97 (115)
Q Consensus 89 v~~a~~~~~ 97 (115)
|.++.++..
T Consensus 83 v~~a~~~~~ 91 (99)
T 2cpj_A 83 VRFACHSAS 91 (99)
T ss_dssp EEESSCCSC
T ss_pred EEEcCCCCC
Confidence 999988654
No 130
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=7.6e-19 Score=102.40 Aligned_cols=82 Identities=15% Similarity=0.236 Sum_probs=71.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-C--CCeeCCeEE
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R--PHNIDGRVV 87 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~--~~~i~g~~i 87 (115)
....+.++|||+|||..+++++|+.+|.+||.|..+.++.+ +|||||+|.+.++|..|+.. + +..++|+.|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 34456789999999999999999999999999999988753 58999999999999999985 3 456999999
Q ss_pred EEEeccCCccc
Q psy13066 88 ETKRAVPRDVR 98 (115)
Q Consensus 88 ~v~~a~~~~~~ 98 (115)
.|.++.++...
T Consensus 84 ~V~~a~~~~~~ 94 (104)
T 1wex_A 84 FFNYSTSKRIT 94 (104)
T ss_dssp EEEECSSSSCC
T ss_pred EEEEccCcccc
Confidence 99999876654
No 131
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3e-19 Score=103.73 Aligned_cols=81 Identities=17% Similarity=0.217 Sum_probs=70.9
Q ss_pred CCCCCCCeEEEcCCCC-CCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-C--CCeeCCeE
Q psy13066 11 TEPESLRKVFIGGLDY-RTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R--PHNIDGRV 86 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~--~~~i~g~~ 86 (115)
....+.++|||+|||+ .+++++|+.+|.+||.|..+.++.+ +|||||+|.+.++|..|+.. + +..++|+.
T Consensus 10 ~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 83 (102)
T 1x4d_A 10 GRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKP 83 (102)
T ss_dssp CCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcE
Confidence 3445678999999999 9999999999999999999998765 37999999999999999986 4 46799999
Q ss_pred EEEEeccCCcc
Q psy13066 87 VETKRAVPRDV 97 (115)
Q Consensus 87 i~v~~a~~~~~ 97 (115)
|.|.+|.++..
T Consensus 84 l~V~~a~~~~~ 94 (102)
T 1x4d_A 84 VRVHLSQKYKR 94 (102)
T ss_dssp CEEEEECCCTT
T ss_pred EEEEECCCCCC
Confidence 99999986543
No 132
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.79 E-value=1.6e-18 Score=101.71 Aligned_cols=77 Identities=19% Similarity=0.435 Sum_probs=69.4
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEE
Q psy13066 13 PESLRKVFIGGLDYR-TTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~ 90 (115)
....++|||+|||.. +++++|+.+|.+||.|..+.+ .+|||||+|.+.++|..|+.. ++..++|+.|.|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 334589999999999 999999999999999999987 468999999999999999977 9999999999999
Q ss_pred eccCCcc
Q psy13066 91 RAVPRDV 97 (115)
Q Consensus 91 ~a~~~~~ 97 (115)
++.++..
T Consensus 96 ~a~~~~~ 102 (110)
T 1wf1_A 96 MAGEPKP 102 (110)
T ss_dssp ESCCCCS
T ss_pred ECCCCCC
Confidence 9985443
No 133
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.79 E-value=4.5e-19 Score=104.48 Aligned_cols=81 Identities=14% Similarity=0.186 Sum_probs=70.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcC-CeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEE
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWG-EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v 89 (115)
.+...++|||+|||+++++++|+.+|++|| .|..+.+.. +.++|||||+|.+.++|..|+.. ++..++|+.|.|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 455678999999999999999999999999 899887743 34789999999999999999987 899999999999
Q ss_pred EeccCCc
Q psy13066 90 KRAVPRD 96 (115)
Q Consensus 90 ~~a~~~~ 96 (115)
..+.+..
T Consensus 100 ~~a~~~p 106 (111)
T 2jvr_A 100 ERDDNPP 106 (111)
T ss_dssp EESCC--
T ss_pred EECCCCC
Confidence 9987543
No 134
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.8e-18 Score=98.84 Aligned_cols=82 Identities=17% Similarity=0.395 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEec
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRA 92 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~a 92 (115)
....++|||+|||..+++++|+.+|.+||.|..+ +.++.++. ||||+|.+.++|.+|+..++..++|+.|.|.++
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPR 79 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCS
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEEC
Confidence 4456799999999999999999999999999987 66655655 999999999999999998899999999999998
Q ss_pred cCCcccc
Q psy13066 93 VPRDVRL 99 (115)
Q Consensus 93 ~~~~~~~ 99 (115)
.++....
T Consensus 80 ~~~~~~~ 86 (94)
T 2e5g_A 80 EQKEFQS 86 (94)
T ss_dssp CCSCCCC
T ss_pred CcCCCCC
Confidence 8765543
No 135
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.79 E-value=1.9e-19 Score=100.34 Aligned_cols=71 Identities=14% Similarity=0.316 Sum_probs=65.3
Q ss_pred CeEEEcCCCCCC------CHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCe-EEE
Q psy13066 17 RKVFIGGLDYRT------TDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR-VVE 88 (115)
Q Consensus 17 ~~l~v~~lp~~~------~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~-~i~ 88 (115)
++|||+|||..+ ++++|+.+|++||.|..+.+. +.+|.++|||||+|.+.++|..|+.. ++..++|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 779999999999999999877 35899999999999999999999998 89999999 877
Q ss_pred E
Q psy13066 89 T 89 (115)
Q Consensus 89 v 89 (115)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 136
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=3e-19 Score=103.27 Aligned_cols=79 Identities=22% Similarity=0.389 Sum_probs=72.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEeccCC
Q psy13066 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPR 95 (115)
Q Consensus 17 ~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~~~ 95 (115)
++|||+|||..+++++|+.+|++||.|..+.++.+ ++|||||+|.+.++|.+|+.. ++..++|+.|.|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999998876 679999999999999999997 888999999999999887
Q ss_pred ccccc
Q psy13066 96 DVRLY 100 (115)
Q Consensus 96 ~~~~~ 100 (115)
....+
T Consensus 76 ~~~~~ 80 (101)
T 2hvz_A 76 PRRSR 80 (101)
T ss_dssp CCSSC
T ss_pred CCccc
Confidence 65443
No 137
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.8e-18 Score=98.09 Aligned_cols=81 Identities=16% Similarity=0.405 Sum_probs=72.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEE
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v 89 (115)
..+...++|||+|||..+++++|+.+|++||.|..+.+++ +||||+|.+.++|..|+.. ++..++|+.|.|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3456678999999999999999999999999999998863 4999999999999999997 999999999999
Q ss_pred EeccCCcccc
Q psy13066 90 KRAVPRDVRL 99 (115)
Q Consensus 90 ~~a~~~~~~~ 99 (115)
.++.++..+.
T Consensus 76 ~~a~~~~~~~ 85 (90)
T 2dnp_A 76 ELSTKGQKKS 85 (90)
T ss_dssp EESCCCCCCC
T ss_pred EECCCCCCCC
Confidence 9999875543
No 138
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=9.8e-19 Score=107.77 Aligned_cols=82 Identities=20% Similarity=0.331 Sum_probs=74.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEE
Q psy13066 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (115)
Q Consensus 10 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~ 88 (115)
.......++|||+|||+.+++++|+.+|++||.|..+.++.+ ++|||||+|.+.++|..|+.. ++..++|+.|.
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 444566789999999999999999999999999999998776 579999999999999999997 89999999999
Q ss_pred EEeccCCc
Q psy13066 89 TKRAVPRD 96 (115)
Q Consensus 89 v~~a~~~~ 96 (115)
|.++.++.
T Consensus 142 v~~a~~~~ 149 (150)
T 2i2y_A 142 VELSNGEK 149 (150)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCC
Confidence 99998764
No 139
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.79 E-value=8e-19 Score=99.61 Aligned_cols=82 Identities=33% Similarity=0.488 Sum_probs=63.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEE
Q psy13066 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVET 89 (115)
Q Consensus 10 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v 89 (115)
...+.+..+|||+|||+++++++|+.+|++||.|..+.++.+ ++|||||+|.+.++|.++. .....++|+.|.|
T Consensus 5 ~~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~-~~~~~~~g~~v~v 78 (89)
T 3d2w_A 5 HHHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLC-GEDLIIKGISVHI 78 (89)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHT-TCEEEETTEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHc-CCCcccCCEEEEE
Confidence 344567789999999999999999999999999999988764 6899999999999998532 2344567999999
Q ss_pred EeccCCcc
Q psy13066 90 KRAVPRDV 97 (115)
Q Consensus 90 ~~a~~~~~ 97 (115)
.++.|+..
T Consensus 79 ~~a~~k~~ 86 (89)
T 3d2w_A 79 SNAEPKHN 86 (89)
T ss_dssp EECC----
T ss_pred EEcCCCCc
Confidence 99998764
No 140
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.79 E-value=9.5e-19 Score=108.81 Aligned_cols=84 Identities=21% Similarity=0.289 Sum_probs=78.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEecc
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~ 93 (115)
+.++|||+|||+.+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|..|+.. ++..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 457999999999999999999999999999999999988999999999999999999999986 9999999999999998
Q ss_pred CCccc
Q psy13066 94 PRDVR 98 (115)
Q Consensus 94 ~~~~~ 98 (115)
++...
T Consensus 82 ~~~~~ 86 (168)
T 1b7f_A 82 PGGES 86 (168)
T ss_dssp CCSST
T ss_pred CCccc
Confidence 76543
No 141
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.4e-18 Score=96.47 Aligned_cols=79 Identities=23% Similarity=0.450 Sum_probs=70.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc--CCCeeCCeE
Q psy13066 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN--RPHNIDGRV 86 (115)
Q Consensus 9 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~--~~~~i~g~~ 86 (115)
.+.++...++|||+|||..+++++|+.+|.+||.|..+.+..+ +|||||+|.+.++|..|+.. ++..++|+.
T Consensus 5 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 5 SSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp CCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 3445567789999999999999999999999999999998764 58999999999999999985 788999999
Q ss_pred EEEEecc
Q psy13066 87 VETKRAV 93 (115)
Q Consensus 87 i~v~~a~ 93 (115)
|.|.+++
T Consensus 79 l~v~~ak 85 (85)
T 2ytc_A 79 LNVKWGR 85 (85)
T ss_dssp CCEEECC
T ss_pred EEEEecC
Confidence 9999874
No 142
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.79 E-value=2.5e-18 Score=109.49 Aligned_cols=84 Identities=24% Similarity=0.462 Sum_probs=79.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEec
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a 92 (115)
...++|||+|||..+++++|+.+|.+||.|..+.+..++.+|.++|||||+|.+.++|.+|+.. ++..++|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 5678999999999999999999999999999999999988999999999999999999999997 999999999999999
Q ss_pred cCCcc
Q psy13066 93 VPRDV 97 (115)
Q Consensus 93 ~~~~~ 97 (115)
.++..
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98764
No 143
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.79 E-value=8.5e-20 Score=111.45 Aligned_cols=85 Identities=21% Similarity=0.290 Sum_probs=74.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEe
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKR 91 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~ 91 (115)
.....++|||+|||+.+++++|+++|.+|| +..+.++.++ +++++|||||+|.+.++|.+|+..++..|+|+.|.|..
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEE
Confidence 445668999999999999999999999999 6799999997 49999999999999999999996689999999999999
Q ss_pred ccCCccc
Q psy13066 92 AVPRDVR 98 (115)
Q Consensus 92 a~~~~~~ 98 (115)
+.++...
T Consensus 120 a~~~~~~ 126 (139)
T 2hgn_A 120 NSTTGAS 126 (139)
T ss_dssp CCCSCC-
T ss_pred CCCCCCC
Confidence 8876653
No 144
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.5e-19 Score=100.45 Aligned_cols=82 Identities=20% Similarity=0.450 Sum_probs=71.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCC-eeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CC-CeeCCeEEE
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGE-IVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RP-HNIDGRVVE 88 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~-~~i~g~~i~ 88 (115)
.+...++|||+|||..+++++|+.+|.+||. +..+.+. ++|||||+|.+.++|..|+.. ++ ..++|+.|.
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 3456789999999999999999999999998 5555542 468999999999999999987 88 999999999
Q ss_pred EEeccCCccccc
Q psy13066 89 TKRAVPRDVRLY 100 (115)
Q Consensus 89 v~~a~~~~~~~~ 100 (115)
|.++.++..+..
T Consensus 77 v~~a~~~~~~~~ 88 (93)
T 2cqh_A 77 VDYSVSKKLRSS 88 (93)
T ss_dssp EEECCCCCCCCC
T ss_pred EEEccCccccCC
Confidence 999998766543
No 145
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.1e-18 Score=98.20 Aligned_cols=81 Identities=22% Similarity=0.378 Sum_probs=71.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhc--CCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEE
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQW--GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~--G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i 87 (115)
......++|||+|||..+++++|+.+|.+| |.|..+.+. +|||||+|.+.++|..|+.. ++..++|+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 344567899999999999999999999999 888888653 57999999999999999997 9999999999
Q ss_pred EEEeccCCcccc
Q psy13066 88 ETKRAVPRDVRL 99 (115)
Q Consensus 88 ~v~~a~~~~~~~ 99 (115)
.|.++.++....
T Consensus 82 ~v~~a~~~~~~~ 93 (99)
T 2cpd_A 82 EVTLAKPVDKDS 93 (99)
T ss_dssp EEECCCCCCCCC
T ss_pred EEEECCCCCCCC
Confidence 999999876543
No 146
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.79 E-value=1.2e-18 Score=110.33 Aligned_cols=85 Identities=21% Similarity=0.332 Sum_probs=78.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEe
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~ 91 (115)
....++|||+|||..+++++|+.+|.+||.|..+.+..++ ++.++|||||+|.+.++|..|+.. ++..++|+.|.|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999998 999999999999999999999997 89999999999999
Q ss_pred ccCCccc
Q psy13066 92 AVPRDVR 98 (115)
Q Consensus 92 a~~~~~~ 98 (115)
|.+....
T Consensus 164 a~~~~~~ 170 (177)
T 2f3j_A 164 VASQIDL 170 (177)
T ss_dssp ESSGGGG
T ss_pred ecCCCCC
Confidence 9875543
No 147
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.78 E-value=4e-19 Score=110.51 Aligned_cols=82 Identities=40% Similarity=0.725 Sum_probs=77.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEeccC
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~a~~ 94 (115)
..++|||+|||..+++++|+.+|++||.|..+.+..++.+|.++|||||+|.+.++|.+|+..++..++|+.|.|.+|.|
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 35689999999999999999999999999999999998899999999999999999999999888899999999999998
Q ss_pred Cc
Q psy13066 95 RD 96 (115)
Q Consensus 95 ~~ 96 (115)
+.
T Consensus 166 k~ 167 (167)
T 2cjk_A 166 RH 167 (167)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 148
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.78 E-value=2.3e-18 Score=122.06 Aligned_cols=86 Identities=26% Similarity=0.501 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEe
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~ 91 (115)
....++|||+|||..+++++|..+|.+||.|..|.++.++.++.++|||||+|.+.++|..||.. ++..|+|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34567999999999999999999999999999999999988999999999999999999999987 89999999999999
Q ss_pred ccCCccc
Q psy13066 92 AVPRDVR 98 (115)
Q Consensus 92 a~~~~~~ 98 (115)
+.++...
T Consensus 179 a~~~~~~ 185 (437)
T 3pgw_S 179 ERGRTVK 185 (437)
T ss_pred eCCCCCC
Confidence 9876553
No 149
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=99.56 Aligned_cols=80 Identities=18% Similarity=0.201 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEE-EEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEE
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDV-VVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~ 90 (115)
....++|||+|||..+++++|+.+|.+||.|..+ .++.++.++ .|||+|.+.++|..|+.. ++..++|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4457899999999999999999999999999999 577776444 399999999999999987 9999999999999
Q ss_pred eccCCc
Q psy13066 91 RAVPRD 96 (115)
Q Consensus 91 ~a~~~~ 96 (115)
++.++.
T Consensus 88 ~a~~~~ 93 (96)
T 2e44_A 88 YIPDEM 93 (96)
T ss_dssp ECCCCC
T ss_pred EcCccc
Confidence 999874
No 150
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.78 E-value=4e-18 Score=106.42 Aligned_cols=80 Identities=24% Similarity=0.479 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEe
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~ 91 (115)
....++|||+|||..+++++|+.+|++||.|..+.+..++.+|.++|+|||+|.+.++|.+|+.. ++..++|+.|.|.+
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 34578999999999999999999999999999999999988999999999999999999999998 99999999999998
Q ss_pred c
Q psy13066 92 A 92 (115)
Q Consensus 92 a 92 (115)
|
T Consensus 171 A 171 (172)
T 2g4b_A 171 A 171 (172)
T ss_dssp C
T ss_pred C
Confidence 7
No 151
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.77 E-value=3.3e-19 Score=109.09 Aligned_cols=85 Identities=15% Similarity=0.235 Sum_probs=72.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEE--------EEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCee
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDV--------VVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI 82 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~--------~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i 82 (115)
...+.++|||+|||..+++++|+.+|.+||.|..+ .+. .+|.++|||||+|.+.++|.+|+.. ++..+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 117 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVL 117 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence 35567899999999999999999999999988753 222 2688999999999999999999997 99999
Q ss_pred CCeEEEEEeccCCcccc
Q psy13066 83 DGRVVETKRAVPRDVRL 99 (115)
Q Consensus 83 ~g~~i~v~~a~~~~~~~ 99 (115)
+|+.|.|.++.+...+.
T Consensus 118 ~g~~l~V~~a~~~~~~~ 134 (143)
T 3egn_A 118 FGKPMVVQFARSARPKQ 134 (143)
T ss_dssp TTEECEEEECCCSCC--
T ss_pred CCcEEEEEECCCCCCcc
Confidence 99999999998765544
No 152
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.7e-18 Score=99.37 Aligned_cols=80 Identities=21% Similarity=0.383 Sum_probs=69.6
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEE
Q psy13066 12 EPESLRKVFIGGLDY-RTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v 89 (115)
+..+.++|||+|||. .+++++|+.+|.+||.|..+.+. +|||||+|.+.++|..|+.. ++..+.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345678999999998 99999999999999999999873 68999999999999999997 899999999999
Q ss_pred EeccCCcccc
Q psy13066 90 KRAVPRDVRL 99 (115)
Q Consensus 90 ~~a~~~~~~~ 99 (115)
.++.++....
T Consensus 78 ~~a~~~~~~~ 87 (96)
T 2kvi_A 78 EVSSSNARPQ 87 (96)
T ss_dssp EEEECCCC--
T ss_pred EEcCcCCCCC
Confidence 9998765543
No 153
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.77 E-value=5.2e-18 Score=109.32 Aligned_cols=85 Identities=24% Similarity=0.592 Sum_probs=79.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEec
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a 92 (115)
...++|||+|||..+++++|+.+|+.||.|..+.+..++.+|.++|||||+|.+.++|.+|+.. ++..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 3557999999999999999999999999999999999988999999999999999999999997 999999999999999
Q ss_pred cCCccc
Q psy13066 93 VPRDVR 98 (115)
Q Consensus 93 ~~~~~~ 98 (115)
.++...
T Consensus 203 ~~~~~~ 208 (216)
T 2qfj_A 203 VTPPMP 208 (216)
T ss_dssp SSCSST
T ss_pred cCCCCC
Confidence 987543
No 154
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.3e-18 Score=102.96 Aligned_cols=77 Identities=18% Similarity=0.201 Sum_probs=69.2
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcC----HHH----HHHHHh--c-CCCe
Q psy13066 17 RKVFIGGL----DYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSE----AKM----VDDAMS--N-RPHN 81 (115)
Q Consensus 17 ~~l~v~~l----p~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~----~~~----a~~al~--~-~~~~ 81 (115)
+.|||+|| |+.+++.+|+.+|++||+|..+.++.|+.||.++|||||+|.+ +++ |.+|+. . ++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 433 788877 5 8999
Q ss_pred eCCeEEEEEecc
Q psy13066 82 IDGRVVETKRAV 93 (115)
Q Consensus 82 i~g~~i~v~~a~ 93 (115)
|+|+.|+|..-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998654
No 155
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.1e-17 Score=103.65 Aligned_cols=80 Identities=21% Similarity=0.479 Sum_probs=73.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEeccCC
Q psy13066 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPR 95 (115)
Q Consensus 17 ~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~~~ 95 (115)
++|||+|||..+++++|+.+|++||.|..+.++.++ ++.++|||||+|.+.++|..|+.. ++..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999997 678999999999999999999977 999999999999999766
Q ss_pred cc
Q psy13066 96 DV 97 (115)
Q Consensus 96 ~~ 97 (115)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 156
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.1e-17 Score=94.87 Aligned_cols=81 Identities=19% Similarity=0.337 Sum_probs=71.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEE
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v 89 (115)
......++|||+|+ .+++++|+.+|.+||.|..+.+. ..+|||||+|.+.++|.+|+.. ++..++|+.|.|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 33456789999995 89999999999999999999874 4678999999999999999977 899999999999
Q ss_pred EeccCCcccc
Q psy13066 90 KRAVPRDVRL 99 (115)
Q Consensus 90 ~~a~~~~~~~ 99 (115)
.++.++....
T Consensus 82 ~~a~~~~~~~ 91 (97)
T 1x5p_A 82 NIARKQPMLD 91 (97)
T ss_dssp ECCSSCCCCC
T ss_pred EECCCCCCCC
Confidence 9999876554
No 157
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.7e-18 Score=101.16 Aligned_cols=79 Identities=16% Similarity=0.254 Sum_probs=70.1
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc---CCCeeCCeEEE
Q psy13066 13 PESLRKVFIGGLDYR-TTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN---RPHNIDGRVVE 88 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~---~~~~i~g~~i~ 88 (115)
..+.++|||+|||++ +++++|+.+|.+||.|..+.+++ .+|||||+|.+.++|..|+.. ++..++|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456789999999998 99999999999999999999864 368999999999999999985 35679999999
Q ss_pred EEeccCCcc
Q psy13066 89 TKRAVPRDV 97 (115)
Q Consensus 89 v~~a~~~~~ 97 (115)
|.++.++..
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999987654
No 158
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.76 E-value=4.4e-18 Score=110.18 Aligned_cols=82 Identities=24% Similarity=0.453 Sum_probs=75.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEecc
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~ 93 (115)
..++|||+|||..+++++|+.+|+.||.|..+.++.+. +.++|||||+|.+.++|.+|+.. ++..|+|+.|.|.++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 35689999999999999999999999999999999885 44799999999999999999988 9999999999999998
Q ss_pred CCccc
Q psy13066 94 PRDVR 98 (115)
Q Consensus 94 ~~~~~ 98 (115)
++.++
T Consensus 180 ~~~~~ 184 (213)
T 4f02_A 180 SRKER 184 (213)
T ss_dssp CHHHH
T ss_pred CCccc
Confidence 87554
No 159
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.5e-18 Score=97.10 Aligned_cols=80 Identities=26% Similarity=0.490 Sum_probs=68.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEecc
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAV 93 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~a~ 93 (115)
...++|||+|||..+++++|+.+|++||.|..+.++.+ ++|||||+|.+.++|+++... ...++|+.|.|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 35689999999999999999999999999999988654 679999999999999865433 456799999999999
Q ss_pred CCcccc
Q psy13066 94 PRDVRL 99 (115)
Q Consensus 94 ~~~~~~ 99 (115)
++....
T Consensus 77 ~~~~~~ 82 (88)
T 1wf0_A 77 PKHNSN 82 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 877654
No 160
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.75 E-value=1.8e-17 Score=106.11 Aligned_cols=81 Identities=12% Similarity=0.188 Sum_probs=73.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEeccC
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~a~~ 94 (115)
..++|||+|||..+++++|+.+|++||.|..+.++++. ++.++|||||+|.+.++|..|+..++..++|+.|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 35899999999999999999999999999999999986 68999999999999999999998866799999999998765
Q ss_pred Cc
Q psy13066 95 RD 96 (115)
Q Consensus 95 ~~ 96 (115)
-.
T Consensus 187 y~ 188 (193)
T 2voo_A 187 YF 188 (193)
T ss_dssp C-
T ss_pred HH
Confidence 43
No 161
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4.9e-18 Score=100.31 Aligned_cols=81 Identities=22% Similarity=0.391 Sum_probs=69.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCC---CCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEE
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPIT---KRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVET 89 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v 89 (115)
....++|||+|||..+++++|+.+|.+||.|. +.++.++.+ |+++|||||+|.+.++|.+|+... ..++|+.+.+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~ 82 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLC 82 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEe
Confidence 34568999999999999999999999999999 888877666 799999999999999999999874 3478888888
Q ss_pred EeccCC
Q psy13066 90 KRAVPR 95 (115)
Q Consensus 90 ~~a~~~ 95 (115)
..+.+.
T Consensus 83 ~~~~~~ 88 (114)
T 2dnl_A 83 VSSPTI 88 (114)
T ss_dssp ECCSSS
T ss_pred ccCCCc
Confidence 765543
No 162
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.75 E-value=5.9e-18 Score=105.19 Aligned_cols=82 Identities=44% Similarity=0.917 Sum_probs=75.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEEeccC
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~~a~~ 94 (115)
+.++|||+|||..+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|..|+.. +..++|+.|.+.++.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 467999999999999999999999999999999999988999999999999999999999985 5689999999998876
Q ss_pred Ccc
Q psy13066 95 RDV 97 (115)
Q Consensus 95 ~~~ 97 (115)
+..
T Consensus 81 ~~~ 83 (167)
T 2cjk_A 81 RDE 83 (167)
T ss_dssp HHH
T ss_pred hhh
Confidence 544
No 163
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.4e-18 Score=100.63 Aligned_cols=77 Identities=13% Similarity=0.097 Sum_probs=69.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEe
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~ 91 (115)
+...++|||+|||..+++++|+.+|.+||.|..+.++. .+|||||+|.+.++|..|+.. ++..++|+.|.|.+
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34567999999999999999999999999999988753 468999999999999999998 89999999999999
Q ss_pred ccCC
Q psy13066 92 AVPR 95 (115)
Q Consensus 92 a~~~ 95 (115)
+...
T Consensus 81 a~~~ 84 (111)
T 1whx_A 81 APIG 84 (111)
T ss_dssp EETT
T ss_pred CCCC
Confidence 8754
No 164
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.74 E-value=3.5e-17 Score=101.68 Aligned_cols=80 Identities=24% Similarity=0.471 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCC--eEEEE
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG--RVVET 89 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g--~~i~v 89 (115)
....++|||+|||..+++++|+.+|++||.|..+.+..++.++.++|+|||+|.+.++|.+|+.. ++..++| +.|.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 45678999999999999999999999999999999999988899999999999999999999997 8999988 99999
Q ss_pred Eec
Q psy13066 90 KRA 92 (115)
Q Consensus 90 ~~a 92 (115)
.+|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 165
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.74 E-value=1.6e-17 Score=107.02 Aligned_cols=83 Identities=19% Similarity=0.452 Sum_probs=74.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEecc
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~ 93 (115)
..++|||+|||..+++++|+.+|..||.|..+.++.++.++.++|||||+|.+.++|..|+.. ++..++|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 357999999999999999999999999999999999988999999999999999999999996 8999999999999887
Q ss_pred CCcc
Q psy13066 94 PRDV 97 (115)
Q Consensus 94 ~~~~ 97 (115)
+...
T Consensus 107 ~~~~ 110 (216)
T 2qfj_A 107 NIGQ 110 (216)
T ss_dssp CCGG
T ss_pred Cccc
Confidence 6653
No 166
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.73 E-value=1.6e-17 Score=93.81 Aligned_cols=75 Identities=9% Similarity=0.207 Sum_probs=68.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEec
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a 92 (115)
...++|||+|||+.+++++|+.+|.+| .|..+.+. +++|||||+|.+.++|..|+.. ++..++|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 356799999999999999999999999 89988874 5789999999999999999997 999999999999998
Q ss_pred cCC
Q psy13066 93 VPR 95 (115)
Q Consensus 93 ~~~ 95 (115)
...
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 167
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.73 E-value=4.8e-17 Score=101.36 Aligned_cols=81 Identities=12% Similarity=0.256 Sum_probs=71.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCC--eEEE
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG--RVVE 88 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g--~~i~ 88 (115)
.+....+|||+||+..+++++|+.+|++||.|.++.+...+ .+|||||+|.+.++|..|+.. ++..|.| +.|+
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 34456689999999999999999999999999999986542 568999999999999999998 8999965 9999
Q ss_pred EEeccCCc
Q psy13066 89 TKRAVPRD 96 (115)
Q Consensus 89 v~~a~~~~ 96 (115)
|.+++++.
T Consensus 118 V~~Ak~~~ 125 (164)
T 1sjr_A 118 IDFSKLTS 125 (164)
T ss_dssp EEECSSSS
T ss_pred EEEecCCc
Confidence 99999875
No 168
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.73 E-value=5e-17 Score=100.70 Aligned_cols=80 Identities=25% Similarity=0.475 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeE--EEE
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV--VET 89 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~--i~v 89 (115)
....++|||+|||..+++++|+.+|++||.+..+.+..++.+|.++|+|||+|.+.++|.+|+.. ++..++|+. |.|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 34567999999999999999999999999999999999988999999999999999999999997 899999975 778
Q ss_pred Eec
Q psy13066 90 KRA 92 (115)
Q Consensus 90 ~~a 92 (115)
.+|
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 775
No 169
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.72 E-value=3.8e-17 Score=102.04 Aligned_cols=81 Identities=23% Similarity=0.437 Sum_probs=72.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeC---CeEE
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID---GRVV 87 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~---g~~i 87 (115)
.....++|||+|||..+++++|+.+|++||.|..+.+..++ +|.++|||||+|.+.++|.+|+.. ++..+. |+.|
T Consensus 91 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 169 (175)
T 3nmr_A 91 NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPM 169 (175)
T ss_dssp SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCC
T ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCe
Confidence 34467899999999999999999999999999999999996 689999999999999999999988 777665 4899
Q ss_pred EEEecc
Q psy13066 88 ETKRAV 93 (115)
Q Consensus 88 ~v~~a~ 93 (115)
.|.+|.
T Consensus 170 ~V~~ad 175 (175)
T 3nmr_A 170 VVKFAD 175 (175)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999873
No 170
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.72 E-value=4.7e-17 Score=101.94 Aligned_cols=80 Identities=21% Similarity=0.361 Sum_probs=72.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEE
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~ 90 (115)
.....++|||+|||..+++++|+.+|++||.|..+ ..++.++|||||+|.+.++|.+|+.. ++..++|+.|.|.
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 169 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 169 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEE
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999988765 34789999999999999999999997 9999999999999
Q ss_pred eccCCc
Q psy13066 91 RAVPRD 96 (115)
Q Consensus 91 ~a~~~~ 96 (115)
++.|+.
T Consensus 170 ~a~~k~ 175 (175)
T 1fje_B 170 YTGEKG 175 (175)
T ss_dssp ECSSCC
T ss_pred ecCCCC
Confidence 998863
No 171
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.72 E-value=1.8e-17 Score=98.08 Aligned_cols=77 Identities=18% Similarity=0.293 Sum_probs=65.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeE-----E
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV-----V 87 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~-----i 87 (115)
...++|||+|||..+++++|+.+|.+||.|..+.++.+ |||||+|.+.++|..|+.. ++..|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45689999999999999999999999999999988665 8999999999999999997 899999988 7
Q ss_pred EEEeccCCcc
Q psy13066 88 ETKRAVPRDV 97 (115)
Q Consensus 88 ~v~~a~~~~~ 97 (115)
+|..+.++..
T Consensus 87 ~v~~~~~~~~ 96 (115)
T 3beg_B 87 RVKVDGPRSP 96 (115)
T ss_dssp EEEECC----
T ss_pred EeccCCCCCC
Confidence 7877766543
No 172
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.71 E-value=8.6e-17 Score=90.38 Aligned_cols=73 Identities=22% Similarity=0.515 Sum_probs=65.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhc----C-------CeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCe
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQW----G-------EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHN 81 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~ 81 (115)
+...++|||+|||..+++++|+.+|++| | .+..+.+..+ +|||||+|.+.++|.+|+..++..
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~ 76 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGII 76 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCE
Confidence 3467899999999999999999999999 8 8888887654 699999999999999999449999
Q ss_pred eCCeEEEEEe
Q psy13066 82 IDGRVVETKR 91 (115)
Q Consensus 82 i~g~~i~v~~ 91 (115)
++|+.|.|..
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999874
No 173
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.71 E-value=6.7e-17 Score=100.91 Aligned_cols=83 Identities=22% Similarity=0.391 Sum_probs=73.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCC--CcccEEEEEEcCHHHHHHHHhc-CCCeeC---CeEEE
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITK--RSRGFGFITYSEAKMVDDAMSN-RPHNID---GRVVE 88 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~al~~-~~~~i~---g~~i~ 88 (115)
+.++|||+|||+.+++++|+.+|++||.|..+.++.++.++ .++|||||+|.+.++|..|+.. ++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 45799999999999999999999999999999999998776 8999999999999999999987 776664 67788
Q ss_pred EEeccCCcc
Q psy13066 89 TKRAVPRDV 97 (115)
Q Consensus 89 v~~a~~~~~ 97 (115)
+.++.++..
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 887776544
No 174
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.71 E-value=5.8e-17 Score=108.61 Aligned_cols=87 Identities=13% Similarity=0.112 Sum_probs=80.2
Q ss_pred CCCCCCeEEEcCCCCCC-CHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEE
Q psy13066 12 EPESLRKVFIGGLDYRT-TDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~-~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v 89 (115)
.....++|||+|||..+ ++++|+.+|+.||.|..+.+..++ +|.++|+|||+|.+.++|.+|+.. ++..++|+.|.|
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 44567899999999995 999999999999999999999987 899999999999999999999998 999999999999
Q ss_pred EeccCCcccc
Q psy13066 90 KRAVPRDVRL 99 (115)
Q Consensus 90 ~~a~~~~~~~ 99 (115)
.++.++..+.
T Consensus 259 ~~a~~~~~~~ 268 (284)
T 3smz_A 259 SFCAPGPPGR 268 (284)
T ss_dssp EECCSSSCHH
T ss_pred EEecCCCccc
Confidence 9999887654
No 175
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=3.6e-16 Score=93.57 Aligned_cols=76 Identities=16% Similarity=0.240 Sum_probs=66.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccE-EEEEEcCHHHHHHHHhc-CCCeeCC--eEEEEEe
Q psy13066 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGF-GFITYSEAKMVDDAMSN-RPHNIDG--RVVETKR 91 (115)
Q Consensus 16 ~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~al~~-~~~~i~g--~~i~v~~ 91 (115)
.-.|||+||+..+++++|+.+|++||.|.++.+... .|+ |||+|.+.++|..|+.. +|..|.| +.|+|.+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 345689999999999999999999999999988652 276 99999999999999998 9999987 5899999
Q ss_pred ccCCcc
Q psy13066 92 AVPRDV 97 (115)
Q Consensus 92 a~~~~~ 97 (115)
|.++..
T Consensus 99 Ak~~~l 104 (124)
T 2e5i_A 99 ARPTRL 104 (124)
T ss_dssp CSCSCC
T ss_pred ecCCcc
Confidence 988753
No 176
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.71 E-value=9e-17 Score=95.92 Aligned_cols=80 Identities=19% Similarity=0.342 Sum_probs=69.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEE
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~ 90 (115)
.+...++|||+|+ .+++++|+.+|++||.|..+.+. .++|||||+|.+.++|..|+.. ++..++|+.|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999995 69999999999999999999875 4679999999999999999987 8999999999999
Q ss_pred eccCCcccc
Q psy13066 91 RAVPRDVRL 99 (115)
Q Consensus 91 ~a~~~~~~~ 99 (115)
++.++....
T Consensus 107 ~a~~~~~~~ 115 (121)
T 2bz2_A 107 IARKQPMLD 115 (121)
T ss_dssp ECCSSCC--
T ss_pred EeCCCCCCC
Confidence 999876544
No 177
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.71 E-value=9.2e-17 Score=108.01 Aligned_cols=84 Identities=14% Similarity=0.229 Sum_probs=75.3
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHhhhcCCeeEEEEEeCCC-CCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEE
Q psy13066 12 EPESLRKVFIGGLDYR-TTDESLQAFFEQWGEIVDVVVMKDPI-TKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~-~~~~~l~~~f~~~G~i~~~~~~~~~~-~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~ 88 (115)
.....++|||+|||.. +++++|+.+|+.||.|..+.++.+.. ||.++|||||+|.+.++|.+|+ . ++..++|+.|.
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 3456689999999999 99999999999999999999998875 4999999999999999999999 6 99999999999
Q ss_pred EEeccCCc
Q psy13066 89 TKRAVPRD 96 (115)
Q Consensus 89 v~~a~~~~ 96 (115)
|.++.++.
T Consensus 285 V~~a~~k~ 292 (292)
T 2ghp_A 285 VSLADKKP 292 (292)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99999863
No 178
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.70 E-value=3.7e-16 Score=104.67 Aligned_cols=84 Identities=14% Similarity=0.251 Sum_probs=78.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEecc
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~ 93 (115)
..++|||+|||..+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+.. ++..++|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 457999999999999999999999999999999999988999999999999999999999977 8999999999999998
Q ss_pred CCccc
Q psy13066 94 PRDVR 98 (115)
Q Consensus 94 ~~~~~ 98 (115)
++...
T Consensus 174 ~~~~~ 178 (284)
T 3smz_A 174 AGQLT 178 (284)
T ss_dssp GGGCC
T ss_pred CCCCC
Confidence 76543
No 179
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.70 E-value=2.5e-16 Score=94.79 Aligned_cols=81 Identities=14% Similarity=0.318 Sum_probs=70.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccE-EEEEEcCHHHHHHHHhc-CCCeeCC--eEE
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGF-GFITYSEAKMVDDAMSN-RPHNIDG--RVV 87 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~al~~-~~~~i~g--~~i 87 (115)
.+...-.|||+||+..+++++|+.+|++||.|.++.+... .+|+ |||+|.+.++|..|+.. +|..|.| ..|
T Consensus 24 ~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~L 98 (130)
T 3zzy_A 24 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 98 (130)
T ss_dssp -CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEE
T ss_pred CCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEE
Confidence 3445567889999999999999999999999999988764 2577 99999999999999999 9999988 899
Q ss_pred EEEeccCCcc
Q psy13066 88 ETKRAVPRDV 97 (115)
Q Consensus 88 ~v~~a~~~~~ 97 (115)
+|.+|+++.-
T Consensus 99 rI~~ak~~~l 108 (130)
T 3zzy_A 99 RIDFSKLTSL 108 (130)
T ss_dssp EEEECSCSSC
T ss_pred EEEecCCCce
Confidence 9999988643
No 180
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.70 E-value=1.8e-16 Score=106.17 Aligned_cols=84 Identities=20% Similarity=0.428 Sum_probs=74.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH----HHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCe
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQ----AFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR 85 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~ 85 (115)
.+..+.++|||+|||..+++++|+ .+|..||.|..+.+.. +++++|||||+|.+.++|..|+.. ++..+.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 345667899999999999999976 8999999999998775 678999999999999999999977 89999999
Q ss_pred EEEEEeccCCcc
Q psy13066 86 VVETKRAVPRDV 97 (115)
Q Consensus 86 ~i~v~~a~~~~~ 97 (115)
.|.|.++.++..
T Consensus 81 ~l~v~~a~~~~~ 92 (282)
T 3pgw_A 81 PMRIQYAKTDSD 92 (282)
T ss_pred EEEEEEeccCcc
Confidence 999999976553
No 181
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.8e-17 Score=94.82 Aligned_cols=77 Identities=12% Similarity=0.216 Sum_probs=67.3
Q ss_pred CCCCCeEEE--cCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCee-----CC
Q psy13066 13 PESLRKVFI--GGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI-----DG 84 (115)
Q Consensus 13 ~~~~~~l~v--~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i-----~g 84 (115)
+.+.++||| +||+..+++++|+.+|++||.|..+.+.. .+|||||+|.+.++|.+|+.. ++..+ .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 445678999 77999999999999999999999987653 368999999999999999998 88888 68
Q ss_pred eEEEEEeccCC
Q psy13066 85 RVVETKRAVPR 95 (115)
Q Consensus 85 ~~i~v~~a~~~ 95 (115)
+.|.|.++...
T Consensus 96 ~~l~v~~a~~~ 106 (114)
T 2cq2_A 96 ITLYLNFVEKV 106 (114)
T ss_dssp EECEEEEESCC
T ss_pred cEEEEEecccC
Confidence 89999988743
No 182
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.69 E-value=2.3e-16 Score=101.83 Aligned_cols=76 Identities=17% Similarity=0.271 Sum_probs=69.5
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEec
Q psy13066 15 SLRKVFIGGLD-YRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (115)
Q Consensus 15 ~~~~l~v~~lp-~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a 92 (115)
+.++|||+||| ..+++++|+.+|++||.|.++.++.+ .+|||||+|.+.++|..|+.. ++..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45799999999 79999999999999999999998765 369999999999999999997 999999999999998
Q ss_pred cCC
Q psy13066 93 VPR 95 (115)
Q Consensus 93 ~~~ 95 (115)
..+
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 643
No 183
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.68 E-value=1.5e-17 Score=104.19 Aligned_cols=86 Identities=20% Similarity=0.317 Sum_probs=73.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEEEE
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETK 90 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~v~ 90 (115)
.++...++|||+|||..+++++|+.+|..+|.+.. .++.+..++.++|||||+|.+.++|.+|++.++..+.|+.|.|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLE 86 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEe
Confidence 34567889999999999999999999999987665 22333347889999999999999999999768999999999999
Q ss_pred eccCCcc
Q psy13066 91 RAVPRDV 97 (115)
Q Consensus 91 ~a~~~~~ 97 (115)
++.++..
T Consensus 87 ~~~~~~~ 93 (175)
T 1fje_B 87 KPKGRDS 93 (175)
T ss_dssp CCCCSSC
T ss_pred cCCCccc
Confidence 9987654
No 184
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3.5e-16 Score=88.75 Aligned_cols=73 Identities=10% Similarity=0.162 Sum_probs=64.3
Q ss_pred CCeEEEcCCCCCCCHHH----HHHHhhhcC-CeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEE
Q psy13066 16 LRKVFIGGLDYRTTDES----LQAFFEQWG-EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (115)
Q Consensus 16 ~~~l~v~~lp~~~~~~~----l~~~f~~~G-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v 89 (115)
.+.+||+|||..+++++ |+.+|.+|| .|.++ ++ |+|||.|.+.++|.+|++. ++..+.|+.|+|
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 33499999999999987 568999994 99887 34 9999999999999999998 999999999999
Q ss_pred EeccCCccc
Q psy13066 90 KRAVPRDVR 98 (115)
Q Consensus 90 ~~a~~~~~~ 98 (115)
++|..+..-
T Consensus 79 ~~A~~~sd~ 87 (96)
T 2diu_A 79 SFTPKNREL 87 (96)
T ss_dssp ESSCCSCCC
T ss_pred EecCCCcce
Confidence 999876643
No 185
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.68 E-value=8e-16 Score=89.68 Aligned_cols=81 Identities=14% Similarity=0.146 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHhhhcCCeeEEEEEeCCCC-CCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeE
Q psy13066 14 ESLRKVFIGGLDY-----RTTDESLQAFFEQWGEIVDVVVMKDPIT-KRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (115)
Q Consensus 14 ~~~~~l~v~~lp~-----~~~~~~l~~~f~~~G~i~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~ 86 (115)
.+.++|++.|+.. +-++++|+..|++||.|..+.++.++.+ +.++|++||+|.+.++|.+|+.. +|..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4567999999963 2368999999999999999999998644 68899999999999999999998 999999999
Q ss_pred EEEEeccC
Q psy13066 87 VETKRAVP 94 (115)
Q Consensus 87 i~v~~a~~ 94 (115)
|.|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999875
No 186
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.67 E-value=3e-16 Score=102.53 Aligned_cols=78 Identities=17% Similarity=0.323 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEE
Q psy13066 13 PESLRKVFIGGLDY-RTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (115)
Q Consensus 13 ~~~~~~l~v~~lp~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~ 90 (115)
..+.++|||+|||+ .+++++|+.+|+.||.|..+.++.++ +|||||+|.+.++|..|+.. ++..+.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45678999999999 99999999999999999999998874 68999999999999999986 8999999999999
Q ss_pred eccCC
Q psy13066 91 RAVPR 95 (115)
Q Consensus 91 ~a~~~ 95 (115)
++.++
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 98755
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.67 E-value=3.9e-16 Score=104.94 Aligned_cols=85 Identities=12% Similarity=0.168 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcC-CeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEec
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWG-EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a 92 (115)
..++|||+|||..+++++|+.+|..|| .|..+.++.++ .|.++|||||+|.+.++|..|+.. ++..++|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 467999999999999999999999999 99999999887 488899999999999999999996 999999999999999
Q ss_pred cCCccccc
Q psy13066 93 VPRDVRLY 100 (115)
Q Consensus 93 ~~~~~~~~ 100 (115)
.++....+
T Consensus 195 ~~~~~~~~ 202 (292)
T 2ghp_A 195 NPLEKSKR 202 (292)
T ss_dssp CCC-----
T ss_pred CCCccccc
Confidence 88765544
No 188
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.65 E-value=1.5e-15 Score=101.03 Aligned_cols=81 Identities=25% Similarity=0.435 Sum_probs=71.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEE
Q psy13066 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (115)
Q Consensus 9 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i 87 (115)
........++|||+|||+.+++++|+.+|+.||.|..+.+.++ +|||||+|.+.++|..|+.. ++..+.|+.|
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l 88 (261)
T 3sde_A 15 GEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPL 88 (261)
T ss_dssp TCCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCcee
Confidence 3444556689999999999999999999999999999988543 58999999999999999987 9999999999
Q ss_pred EEEeccCC
Q psy13066 88 ETKRAVPR 95 (115)
Q Consensus 88 ~v~~a~~~ 95 (115)
.|.++.+.
T Consensus 89 ~v~~a~~~ 96 (261)
T 3sde_A 89 RIRFATHG 96 (261)
T ss_dssp EEEECCCS
T ss_pred EeeecccC
Confidence 99998753
No 189
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.64 E-value=2.5e-15 Score=100.58 Aligned_cols=77 Identities=16% Similarity=0.245 Sum_probs=69.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeC-CeEEEE
Q psy13066 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID-GRVVET 89 (115)
Q Consensus 12 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~-g~~i~v 89 (115)
.....++|||+|||..+++++|+.+|++||.|..+.++.++ +|||||+|.+.++|.+|+.. ++..++ |+.|.|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 34456899999999999999999999999999999988653 58999999999999999998 899999 999999
Q ss_pred Eecc
Q psy13066 90 KRAV 93 (115)
Q Consensus 90 ~~a~ 93 (115)
.+++
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9975
No 190
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.63 E-value=7.9e-16 Score=101.26 Aligned_cols=79 Identities=16% Similarity=0.322 Sum_probs=68.7
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCee
Q psy13066 13 PESLRKVFIGGLDYRT---------TDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI 82 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~---------~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i 82 (115)
....++|||+||+..+ ++++|+.+|++||.|..+.++. .+|||||+|.+.++|+.|++. ++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567899999999998 7999999999999999999875 369999999999999999988 88888
Q ss_pred ------------CCeEEEEEeccCCcc
Q psy13066 83 ------------DGRVVETKRAVPRDV 97 (115)
Q Consensus 83 ------------~g~~i~v~~a~~~~~ 97 (115)
.|+.|.|.+|.+...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999986543
No 191
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.7e-15 Score=85.84 Aligned_cols=84 Identities=14% Similarity=0.196 Sum_probs=70.6
Q ss_pred CCCCCCCeEEEcCCCCCCC-----------HHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-C
Q psy13066 11 TEPESLRKVFIGGLDYRTT-----------DESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R 78 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~-----------~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~ 78 (115)
..+.+.++|+|.||..... +++|+.+|.+||.|..+.+ .++ .++|||||+|.+.++|.+|+.. +
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 3556788999999944432 5799999999999999955 553 3789999999999999999987 8
Q ss_pred CCeeCCeEEEEEeccCCccc
Q psy13066 79 PHNIDGRVVETKRAVPRDVR 98 (115)
Q Consensus 79 ~~~i~g~~i~v~~a~~~~~~ 98 (115)
+..++|+.|.|.++.++...
T Consensus 86 g~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp TCEETTEECEEEECCSCCCS
T ss_pred CCEECCcEEEEEEeCCCCCc
Confidence 99999999999999886543
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.62 E-value=7.9e-16 Score=98.17 Aligned_cols=76 Identities=17% Similarity=0.338 Sum_probs=69.8
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEec
Q psy13066 15 SLRKVFIGGLDY-RTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (115)
Q Consensus 15 ~~~~l~v~~lp~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a 92 (115)
+.++|||+|||+ .+++++|+.+|+.||.|..+.++.++ +|||||+|.+.++|..|+.. ++..++|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 357999999999 99999999999999999999987764 68999999999999999986 899999999999998
Q ss_pred cCC
Q psy13066 93 VPR 95 (115)
Q Consensus 93 ~~~ 95 (115)
.++
T Consensus 77 ~~~ 79 (198)
T 1qm9_A 77 KHQ 79 (198)
T ss_dssp CCC
T ss_pred cCC
Confidence 754
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.60 E-value=6.4e-15 Score=93.91 Aligned_cols=77 Identities=10% Similarity=0.233 Sum_probs=69.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcC-CeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeC-CeEEEEE
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQWG-EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID-GRVVETK 90 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~-g~~i~v~ 90 (115)
.+.++|||+|||..+++++|+.+|..|| .|..+.+..+ .+|+|||+|.+.++|..|+.. ++..++ |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 3478999999999999999999999999 9999988654 268999999999999999997 899999 9999999
Q ss_pred eccCC
Q psy13066 91 RAVPR 95 (115)
Q Consensus 91 ~a~~~ 95 (115)
++.++
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99874
No 194
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.60 E-value=1.2e-14 Score=90.46 Aligned_cols=76 Identities=20% Similarity=0.475 Sum_probs=65.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhc----C-------CeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeC
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQW----G-------EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNID 83 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~ 83 (115)
+.++|||+|||..+++++|+.+|+++ | .+..+.+. ..+|||||+|.+.++|..|+..++..++
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHGGGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHHHhCCcEec
Confidence 46799999999999999999999999 6 56666543 3479999999999999999955899999
Q ss_pred CeEEEEEeccCCc
Q psy13066 84 GRVVETKRAVPRD 96 (115)
Q Consensus 84 g~~i~v~~a~~~~ 96 (115)
|+.|.|.++.+..
T Consensus 77 g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 77 GQSLKIRRPHDYQ 89 (172)
T ss_dssp TEECEEECCSSCC
T ss_pred CceeeecCCcccC
Confidence 9999999887654
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.60 E-value=8.4e-15 Score=97.38 Aligned_cols=82 Identities=21% Similarity=0.244 Sum_probs=73.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-C-CCeeC---CeEEEE
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R-PHNID---GRVVET 89 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~-~~~i~---g~~i~v 89 (115)
+.++|||+|||..+++++|+.+|..||.|..+.++.+. +|.++|||||+|.+.++|.+|+.. + +..+. |+.|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 45799999999999999999999999999999999995 899999999999999999999988 3 44444 999999
Q ss_pred EeccCCcc
Q psy13066 90 KRAVPRDV 97 (115)
Q Consensus 90 ~~a~~~~~ 97 (115)
.++.+...
T Consensus 174 ~~~~~~~~ 181 (261)
T 3sde_A 174 EPMEQFDD 181 (261)
T ss_dssp EECCCEES
T ss_pred eeccccCc
Confidence 99887643
No 196
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.59 E-value=1.8e-14 Score=94.05 Aligned_cols=76 Identities=11% Similarity=0.239 Sum_probs=69.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcC-CeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeC-CeEEEEEe
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWG-EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID-GRVVETKR 91 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~-g~~i~v~~ 91 (115)
+.++|||+|||..+++++|+.+|..|| .|..+.++.+ .+|+|||+|.+.++|.+|+.. ++..++ |+.|.|.+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 468999999999999999999999999 9999988553 368999999999999999997 899999 99999999
Q ss_pred ccCC
Q psy13066 92 AVPR 95 (115)
Q Consensus 92 a~~~ 95 (115)
+.++
T Consensus 225 a~~~ 228 (229)
T 2adc_A 225 SKST 228 (229)
T ss_dssp CSSC
T ss_pred ecCC
Confidence 9874
No 197
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.58 E-value=2e-14 Score=91.31 Aligned_cols=75 Identities=19% Similarity=0.475 Sum_probs=64.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhc----C-------CeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeC
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQW----G-------EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNID 83 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~ 83 (115)
..++|||+|||..+++++|+.+|..| | .+..+.+ +.++|||||+|.+.++|..|+..++..++
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHGGGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHHHhcCCEEc
Confidence 46799999999999999999999999 4 4555543 45679999999999999999955999999
Q ss_pred CeEEEEEeccCC
Q psy13066 84 GRVVETKRAVPR 95 (115)
Q Consensus 84 g~~i~v~~a~~~ 95 (115)
|+.|.|.++.+.
T Consensus 77 g~~i~v~~~~~~ 88 (198)
T 2yh0_A 77 GQSLKIRRPHDY 88 (198)
T ss_dssp TEEEEEECCCCC
T ss_pred CceEEEeCCCCC
Confidence 999999998765
No 198
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.56 E-value=1.9e-15 Score=87.98 Aligned_cols=71 Identities=15% Similarity=0.346 Sum_probs=61.2
Q ss_pred EcCCCCCCCHHHHHHHh------------hhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEE
Q psy13066 21 IGGLDYRTTDESLQAFF------------EQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (115)
Q Consensus 21 v~~lp~~~~~~~l~~~f------------~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i 87 (115)
+.+||..+++++|+..| ++||.|..+.+..++ ++.++|||||+|.+.++|.+|+.. +|..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666667777766666 999999999999886 588999999999999999999998 9999999999
Q ss_pred EEEec
Q psy13066 88 ETKRA 92 (115)
Q Consensus 88 ~v~~a 92 (115)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 199
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.4e-13 Score=79.46 Aligned_cols=80 Identities=11% Similarity=0.178 Sum_probs=64.9
Q ss_pred CCCCCeEEEcCCC-------CCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCe
Q psy13066 13 PESLRKVFIGGLD-------YRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGR 85 (115)
Q Consensus 13 ~~~~~~l~v~~lp-------~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~ 85 (115)
+....++-|.-.. ..+++++|+.+|++||.|..+.++ ++++|||||+|.+.++|..|+.. ...+.|+
T Consensus 7 ~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~ 80 (100)
T 2d9o_A 7 GQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQN-EVGLVDN 80 (100)
T ss_dssp CCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHT-CCBCSSS
T ss_pred CCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHh-cCCCCCC
Confidence 3345566666443 458999999999999999999887 36789999999999999999988 3346899
Q ss_pred EEEEEeccCCccc
Q psy13066 86 VVETKRAVPRDVR 98 (115)
Q Consensus 86 ~i~v~~a~~~~~~ 98 (115)
.|.|.++.++...
T Consensus 81 ~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 81 PLKISWLEGQPQD 93 (100)
T ss_dssp BCEEECSSCCCCC
T ss_pred eEEEEEccCCCCC
Confidence 9999999876543
No 200
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.56 E-value=1.3e-14 Score=93.59 Aligned_cols=69 Identities=9% Similarity=0.127 Sum_probs=62.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCe--eEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCe
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEI--VDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR 85 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i--~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~ 85 (115)
+.++|||+|||+.+++++|+.+|++||.| ..+.+..+. +..+|+|||+|.+.++|..|+.. ++..|+|+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 45689999999999999999999999998 888887774 45569999999999999999998 89888887
No 201
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.53 E-value=4.7e-14 Score=82.14 Aligned_cols=81 Identities=15% Similarity=0.156 Sum_probs=68.5
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHHhhhcCCeeEEEEEeCCCC--CCcccEEEEEEcCHHHHHHHHhc-CCC
Q psy13066 14 ESLRKVFIGGL--DYRTT--------DESLQAFFEQWGEIVDVVVMKDPIT--KRSRGFGFITYSEAKMVDDAMSN-RPH 80 (115)
Q Consensus 14 ~~~~~l~v~~l--p~~~~--------~~~l~~~f~~~G~i~~~~~~~~~~~--~~~~g~~fv~f~~~~~a~~al~~-~~~ 80 (115)
.+++.|.+.|+ |.... +++|+..|++||.|.++.+++++.+ +.++|++||+|.+.++|.+|+.. +|.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35678888887 33333 3689999999999999999888644 36799999999999999999998 999
Q ss_pred eeCCeEEEEEeccC
Q psy13066 81 NIDGRVVETKRAVP 94 (115)
Q Consensus 81 ~i~g~~i~v~~a~~ 94 (115)
.++|+.|.|.++.+
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998764
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.49 E-value=2.2e-13 Score=80.84 Aligned_cols=80 Identities=11% Similarity=0.103 Sum_probs=68.5
Q ss_pred CCCeEEEcCCCC--CC---CHHHHHHHhhhcCCeeEEEEEeCCC----CCCcccEEEEEEcCHHHHHHHHhc-CCCeeCC
Q psy13066 15 SLRKVFIGGLDY--RT---TDESLQAFFEQWGEIVDVVVMKDPI----TKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG 84 (115)
Q Consensus 15 ~~~~l~v~~lp~--~~---~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g 84 (115)
+.+.|++.|+-. ++ -+++|+..|++||.|..+.++.++. ++.++|++||+|.+.++|.+|+.. +|..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567899999832 22 3689999999999999999998864 356789999999999999999999 9999999
Q ss_pred eEEEEEeccC
Q psy13066 85 RVVETKRAVP 94 (115)
Q Consensus 85 ~~i~v~~a~~ 94 (115)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998754
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.42 E-value=7e-13 Score=91.32 Aligned_cols=75 Identities=11% Similarity=0.208 Sum_probs=62.7
Q ss_pred CCCCCeEEEcC--CCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCee---CCe-
Q psy13066 13 PESLRKVFIGG--LDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI---DGR- 85 (115)
Q Consensus 13 ~~~~~~l~v~~--lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i---~g~- 85 (115)
+.+..+|||+| |+..+++++|+++|++||.|..+.+.. ++|||||+|.+.++|.+|++. ||..+ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 55677999998 578999999999999999999876632 469999999999999999998 88877 244
Q ss_pred -EEEEEecc
Q psy13066 86 -VVETKRAV 93 (115)
Q Consensus 86 -~i~v~~a~ 93 (115)
.+.+.++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 46677763
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.32 E-value=1.8e-11 Score=72.15 Aligned_cols=78 Identities=9% Similarity=0.155 Sum_probs=63.7
Q ss_pred CCCCCeEEEcCCCCCC----------CHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCe
Q psy13066 13 PESLRKVFIGGLDYRT----------TDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHN 81 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~----------~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~ 81 (115)
+.+++.|.+.|+=..- -+++|+..|++||.|.++.+.++. .+|++||.|.+.++|.+|+.. +|..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3456678888773221 135789999999999999886552 589999999999999999998 9999
Q ss_pred eCCeEEEEEeccC
Q psy13066 82 IDGRVVETKRAVP 94 (115)
Q Consensus 82 i~g~~i~v~~a~~ 94 (115)
++|+.|.|.++..
T Consensus 80 f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 80 FAGKMITAAYVPL 92 (114)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCEEEEEEEEcH
Confidence 9999999998854
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=9e-11 Score=65.95 Aligned_cols=74 Identities=18% Similarity=0.248 Sum_probs=62.3
Q ss_pred CCCCeEEEcCCC----CCCCH----HHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCe
Q psy13066 14 ESLRKVFIGGLD----YRTTD----ESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGR 85 (115)
Q Consensus 14 ~~~~~l~v~~lp----~~~~~----~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~ 85 (115)
.+..|++|...+ ..+.+ .+|...|.+||.+..++++.++ +||+|.+.++|.+|+..++..++|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCe
Confidence 345678887766 23444 5789999999999999998864 8999999999999999899999999
Q ss_pred EEEEEeccCC
Q psy13066 86 VVETKRAVPR 95 (115)
Q Consensus 86 ~i~v~~a~~~ 95 (115)
.|+|..+.|.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999998864
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=1e-10 Score=69.39 Aligned_cols=77 Identities=18% Similarity=0.117 Sum_probs=65.1
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcC-HHHHHHHHhc---CCCeeCCeEE
Q psy13066 13 PESLRKVFIGGLDYR-TTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSE-AKMVDDAMSN---RPHNIDGRVV 87 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~-~~~a~~al~~---~~~~i~g~~i 87 (115)
-.....|+|+||+.. ++.++|+.+|+.||.|..|.+..+.. .|||.|.+ .++|..|+.. .+..|+|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 345678999999999 99999999999999999999877752 59999999 7889988887 3778999888
Q ss_pred EEEeccCC
Q psy13066 88 ETKRAVPR 95 (115)
Q Consensus 88 ~v~~a~~~ 95 (115)
.+......
T Consensus 89 ~~evL~Ge 96 (121)
T 1owx_A 89 TWEVLEGE 96 (121)
T ss_dssp EEEECCHH
T ss_pred EEEECCCH
Confidence 88765443
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=1.9e-09 Score=60.86 Aligned_cols=73 Identities=14% Similarity=0.150 Sum_probs=61.1
Q ss_pred CCCCCeEEEcCCCCC-----CCH----HHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeC
Q psy13066 13 PESLRKVFIGGLDYR-----TTD----ESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNID 83 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~-----~~~----~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~ 83 (115)
..+..|++|..++.. +.+ .+|...|.+||.+..++++.++ +||+|.+.++|.+|+..++..++
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~ 83 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVK 83 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEET
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeC
Confidence 345568999887643 333 5689999999999999998874 99999999999999998999999
Q ss_pred CeEEEEEecc
Q psy13066 84 GRVVETKRAV 93 (115)
Q Consensus 84 g~~i~v~~a~ 93 (115)
|+.|+|..-.
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999998643
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.00 E-value=1.3e-09 Score=70.64 Aligned_cols=66 Identities=14% Similarity=0.140 Sum_probs=58.5
Q ss_pred CCHHHHHHHhhhcCCeeEEEEEeCC----CCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEEEEecc
Q psy13066 28 TTDESLQAFFEQWGEIVDVVVMKDP----ITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (115)
Q Consensus 28 ~~~~~l~~~f~~~G~i~~~~~~~~~----~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~v~~a~ 93 (115)
-.++++...|.+||.|..+.+..+. .++.++|++||+|.+.++|.+|+.. +|..++||.|.+.++.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3467899999999999999988554 3458999999999999999999999 9999999999999875
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.74 E-value=2e-07 Score=53.86 Aligned_cols=73 Identities=12% Similarity=0.223 Sum_probs=64.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhc-----CCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeE
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQW-----GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~-----G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~ 86 (115)
++..+++-+-+||..+++..|+.+...+ |++.++.+..|- +.|+|+|.+...|-+|... +|.+|+|+.
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3456788888999999999999999999 999999998874 6899999999999988866 999999999
Q ss_pred EEEEe
Q psy13066 87 VETKR 91 (115)
Q Consensus 87 i~v~~ 91 (115)
|++.-
T Consensus 92 Lr~gT 96 (117)
T 2l9w_A 92 IRSGT 96 (117)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99864
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.18 E-value=1.8e-05 Score=45.38 Aligned_cols=79 Identities=10% Similarity=0.030 Sum_probs=63.1
Q ss_pred CCCeEEEcCCCCCCC-----HHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc-CCCeeCCeEEE
Q psy13066 15 SLRKVFIGGLDYRTT-----DESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~-----~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~-~~~~i~g~~i~ 88 (115)
-+.+|+++||+.++- .+.++.+|..|+++.......+- +=..|.|.++++|.+|... ++..+.|+.++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 456899999988752 25789999999988887665542 2357999999999999887 89999999999
Q ss_pred EEeccCCcccc
Q psy13066 89 TKRAVPRDVRL 99 (115)
Q Consensus 89 v~~a~~~~~~~ 99 (115)
|-++++.....
T Consensus 78 ~YFgq~~~~~~ 88 (104)
T 1wey_A 78 LYFAQTLHIGS 88 (104)
T ss_dssp EECCCCSSCCS
T ss_pred EEecCCCCCcc
Confidence 99998665433
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=0.00014 Score=41.58 Aligned_cols=77 Identities=22% Similarity=0.323 Sum_probs=62.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhh---c--CCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCCeEEE
Q psy13066 14 ESLRKVFIGGLDYRTTDESLQAFFEQ---W--GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVE 88 (115)
Q Consensus 14 ~~~~~l~v~~lp~~~~~~~l~~~f~~---~--G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g~~i~ 88 (115)
...++|.|.|||+.+.++.|+-+|+. - |.+..+.... +-|+|+|.+...+++.+....+.++|..|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 34678999999999999999999986 2 4666665422 578999999999999998877889999999
Q ss_pred EEeccCCccc
Q psy13066 89 TKRAVPRDVR 98 (115)
Q Consensus 89 v~~a~~~~~~ 98 (115)
|....++...
T Consensus 78 V~P~~~~~~~ 87 (104)
T 2dhx_A 78 LRPAPPRAPA 87 (104)
T ss_dssp EEECCCCCCC
T ss_pred EEcCCCCCcc
Confidence 9877665543
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.97 E-value=6.5e-05 Score=42.48 Aligned_cols=56 Identities=16% Similarity=0.313 Sum_probs=47.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc
Q psy13066 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (115)
Q Consensus 13 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~ 77 (115)
+.....+++ ++|+++...||..+|+.|| ...|.++.| ..|||.|.+++.|..|+..
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTC-SCCCEEEET-------TEEEEECSCHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHh
Confidence 344557777 9999999999999999999 456788877 3899999999999998874
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.86 E-value=0.00016 Score=40.54 Aligned_cols=66 Identities=15% Similarity=0.066 Sum_probs=51.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCc--ccEEEEEEcCHHHHHHHHhc-CCCee
Q psy13066 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRS--RGFGFITYSEAKMVDDAMSN-RPHNI 82 (115)
Q Consensus 17 ~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~--~g~~fv~f~~~~~a~~al~~-~~~~i 82 (115)
+.+.|++||+.+|++++.+.+.....+.....+....+.+. ..-||+.|.+.+++...... +|..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 46889999999999999999998887666666655444332 34589999999999988877 66654
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.85 E-value=0.0002 Score=42.01 Aligned_cols=78 Identities=15% Similarity=0.207 Sum_probs=60.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhcCCCeeCC-eEEEE
Q psy13066 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDG-RVVET 89 (115)
Q Consensus 11 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~~~~~i~g-~~i~v 89 (115)
.+....+.|.|-++|+.. -..+...|.++|.|.+... . .....-.+.|.++.+|++||..|+..++| -.|-|
T Consensus 19 ~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~----~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 19 EDHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--S----NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGV 91 (119)
T ss_dssp --CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--C----SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEE
T ss_pred CCCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--C----CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEE
Confidence 345567889999999996 4667888999999998765 1 12358899999999999999999999975 66677
Q ss_pred EeccCC
Q psy13066 90 KRAVPR 95 (115)
Q Consensus 90 ~~a~~~ 95 (115)
.....+
T Consensus 92 ~p~~d~ 97 (119)
T 1wwh_A 92 KPCIDK 97 (119)
T ss_dssp EECCCH
T ss_pred EECCCH
Confidence 765433
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.68 E-value=0.00013 Score=41.41 Aligned_cols=52 Identities=15% Similarity=0.305 Sum_probs=45.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc
Q psy13066 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (115)
Q Consensus 17 ~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~ 77 (115)
..+++ ++|+++...||..+|+.|| ...|.++.| ..||+.|.+++.|..|+..
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHh
Confidence 45666 9999999999999999998 567888887 3899999999999998874
No 216
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.12 E-value=0.00073 Score=40.24 Aligned_cols=78 Identities=15% Similarity=0.255 Sum_probs=54.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeE-EEEEe--------CCCCC-----CcccEEEEEEcCHHHHHHHHhcCCCe
Q psy13066 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVD-VVVMK--------DPITK-----RSRGFGFITYSEAKMVDDAMSNRPHN 81 (115)
Q Consensus 16 ~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~-~~~~~--------~~~~~-----~~~g~~fv~f~~~~~a~~al~~~~~~ 81 (115)
...|.|-+.|++.+ ..+...|+++|.|.+ ..... .+.+. .....-.|.|.+..+|.+||..+|..
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 44677778877765 556778999998865 11110 00001 13457799999999999999999999
Q ss_pred eCCeEEEEEeccC
Q psy13066 82 IDGRVVETKRAVP 94 (115)
Q Consensus 82 i~g~~i~v~~a~~ 94 (115)
++|..|-|.+..+
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9999888876643
No 217
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.96 E-value=0.0014 Score=39.70 Aligned_cols=30 Identities=10% Similarity=0.102 Sum_probs=24.9
Q ss_pred EEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc
Q psy13066 46 VVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (115)
Q Consensus 46 ~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~ 77 (115)
+.++.+. +.++|||||+|.+.++|++|+..
T Consensus 3 ~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~ 32 (158)
T 2kn4_A 3 YKLILNG--KTLKGETTTEAVDAATAEKVFKQ 32 (158)
T ss_dssp EEEEEEC--SSCEEEEEEECSSHHHHHHHHHH
T ss_pred EEEEecC--ccccchhHHHHHHHHhHHHHHHh
Confidence 4566664 46899999999999999999866
No 218
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.93 E-value=0.001 Score=37.63 Aligned_cols=65 Identities=11% Similarity=-0.006 Sum_probs=43.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCc--ccEEEEEEcCHHHHHHHHhc-CCCee
Q psy13066 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRS--RGFGFITYSEAKMVDDAMSN-RPHNI 82 (115)
Q Consensus 18 ~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~--~g~~fv~f~~~~~a~~al~~-~~~~i 82 (115)
.|.|+.||+.+|++++.+.+...-.+.....+....+.+. -.-|||.|.+.+++...... +|..+
T Consensus 11 KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 11 MVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred eEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 5889999999999987777765533322222222222222 23489999999999998877 65544
No 219
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.66 E-value=0.0019 Score=46.16 Aligned_cols=57 Identities=11% Similarity=0.274 Sum_probs=43.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~ 77 (115)
..++++|. .|...++.+|.++|++||+|..+.+-.+. | -|+.|+|.+.+++..++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence 45789996 79999999999999999999999877653 3 6999999999999988755
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.39 E-value=0.02 Score=34.26 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=35.1
Q ss_pred CCCcccEEEEEEcCHHHHHHHHhc--CCCeeCCeEEEEEeccCC
Q psy13066 54 TKRSRGFGFITYSEAKMVDDAMSN--RPHNIDGRVVETKRAVPR 95 (115)
Q Consensus 54 ~~~~~g~~fv~f~~~~~a~~al~~--~~~~i~g~~i~v~~a~~~ 95 (115)
..+.+|+++++|.+.++|++|+.. ++..++| .+.++++.++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 457789999999999999999965 6788999 9999987753
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.66 E-value=0.41 Score=34.67 Aligned_cols=54 Identities=15% Similarity=0.293 Sum_probs=43.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc
Q psy13066 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (115)
Q Consensus 15 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~ 77 (115)
.+..++++ +|..|...+|...|+.+|. ..|.++.+ ..|||.|.+.+.+..++..
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHH
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHH
Confidence 34567776 9999999999999999994 46665554 3799999999999988866
No 222
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=30.31 E-value=39 Score=18.71 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=15.2
Q ss_pred EEcCCCCCCCHHHHHHHhhhc
Q psy13066 20 FIGGLDYRTTDESLQAFFEQW 40 (115)
Q Consensus 20 ~v~~lp~~~~~~~l~~~f~~~ 40 (115)
+|+++...+|..|+-..+.+.
T Consensus 20 ~VsGvT~~TTC~DVV~aL~~~ 40 (95)
T 2cs4_A 20 IVCGVTEVTTCQEVVIALAQA 40 (95)
T ss_dssp CCSSBCSSSCHHHHHHHHHHH
T ss_pred EEECCCCCCcHHHHHHHHHhc
Confidence 345788899998888766543
No 223
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=28.45 E-value=1e+02 Score=18.68 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=27.0
Q ss_pred CCHHHHHHHhhhcCCee---EEEEEeCCCCCCcccEEEE
Q psy13066 28 TTDESLQAFFEQWGEIV---DVVVMKDPITKRSRGFGFI 63 (115)
Q Consensus 28 ~~~~~l~~~f~~~G~i~---~~~~~~~~~~~~~~g~~fv 63 (115)
.++++|++.-.+.|.+. ++.+..+..+|..+.++|-
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 57899999998888664 5566666447888877764
No 224
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=26.70 E-value=86 Score=17.23 Aligned_cols=78 Identities=13% Similarity=0.128 Sum_probs=55.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCCcccEEEEEEcCHHHHHHHHhc----C----CCeeCCeEE
Q psy13066 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN----R----PHNIDGRVV 87 (115)
Q Consensus 16 ~~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~----~----~~~i~g~~i 87 (115)
.+-+-+-|+|..+-..++--..+..|.--.+..+ -|-|.+.|.+.++..-|+.. + ..++.|..+
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqic 83 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQIC 83 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceee
Confidence 3456677999999998888777887765554432 25688999998888888754 1 446788888
Q ss_pred EEEeccCCccccce
Q psy13066 88 ETKRAVPRDVRLYL 101 (115)
Q Consensus 88 ~v~~a~~~~~~~~~ 101 (115)
.|-...|..+....
T Consensus 84 dvistipedeekny 97 (129)
T 4eyt_A 84 DVISTIPEDEEKNY 97 (129)
T ss_dssp EEECCCCHHHHHHH
T ss_pred eeeecCCchhhhch
Confidence 88766676554433
No 225
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=24.85 E-value=95 Score=20.29 Aligned_cols=33 Identities=12% Similarity=0.371 Sum_probs=25.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEEe
Q psy13066 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMK 50 (115)
Q Consensus 17 ~~l~v~~lp~~~~~~~l~~~f~~~G~i~~~~~~~ 50 (115)
.-..|+|+|..++..-+..++.. +.+....++.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 46789999999999999999987 6666555443
No 226
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=23.62 E-value=1e+02 Score=17.15 Aligned_cols=22 Identities=14% Similarity=0.359 Sum_probs=20.0
Q ss_pred CcccEEEEEEcCHHHHHHHHhc
Q psy13066 56 RSRGFGFITYSEAKMVDDAMSN 77 (115)
Q Consensus 56 ~~~g~~fv~f~~~~~a~~al~~ 77 (115)
..+||-||+=.+..++..|+..
T Consensus 49 ~lkGyIyVEA~~~~~V~~ai~g 70 (106)
T 3h7h_B 49 HVKGYIYVEAYKQTHVKQAIEG 70 (106)
T ss_dssp TCCSEEEEEESSHHHHHHHHTT
T ss_pred CCceEEEEEeCCHHHHHHHHhc
Confidence 3689999999999999999977
Done!