RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13066
(115 letters)
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 86.2 bits (213), Expect = 3e-24
Identities = 56/82 (68%), Positives = 67/82 (81%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE LRK+FIGGL + TTDESL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 2 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 61
Query: 72 DDAMSNRPHNIDGRVVETKRAV 93
D AM+ RPH +DGRVVE KRAV
Sbjct: 62 DAAMNARPHKVDGRVVEPKRAV 83
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 86.7 bits (214), Expect = 4e-24
Identities = 53/87 (60%), Positives = 68/87 (78%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
E E RK+FIGGL + TT+ESL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S V
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDVR 98
D AM+ RPH+IDGRVVE KRAV R+
Sbjct: 76 DAAMAARPHSIDGRVVEPKRAVAREES 102
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 79.2 bits (195), Expect = 1e-21
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
K+F+GGL T +E ++ +F +GE+ + + D T + RGF FIT+ E + V M
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 78 RPHNIDGRVVETKRA 92
+ HN+ E K A
Sbjct: 61 KYHNVGLSKCEIKVA 75
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 76.6 bits (188), Expect = 2e-20
Identities = 34/75 (45%), Positives = 54/75 (72%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
K+FIGGL ++TT E L+ +F Q+GE+ + +VM+DP+TKRSRGFGF+T+ + VD ++
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
Query: 78 RPHNIDGRVVETKRA 92
H +D + ++ K A
Sbjct: 62 SRHELDSKTIDPKVA 76
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 76.2 bits (187), Expect = 2e-20
Identities = 35/75 (46%), Positives = 54/75 (72%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
K+FIGGL + TT + L+ +F ++GE+VD + DPIT RSRGFGF+ + E++ VD M
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 78 RPHNIDGRVVETKRA 92
+ H ++G+V++ KRA
Sbjct: 61 KEHKLNGKVIDPKRA 75
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 74.6 bits (183), Expect = 1e-19
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73
+ + + GL ++TT++ L+ +F +GE++ V V KD T S+GFGF+ ++E +
Sbjct: 6 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVK 65
Query: 74 AMSNRPHNIDGRVVETKRAVPRD 96
MS R H IDGR + K +
Sbjct: 66 VMSQR-HMIDGRWCDCKLPNSKQ 87
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 71.6 bits (175), Expect = 2e-18
Identities = 22/88 (25%), Positives = 39/88 (44%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
E R VF L R L+ FF G++ DV ++ D ++RS+G ++ + E + V
Sbjct: 14 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSV 73
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDVRL 99
A+ + G + + + RL
Sbjct: 74 PLAIGLTGQRLLGVPIIVQASQAEKNRL 101
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 73.1 bits (178), Expect = 5e-18
Identities = 57/84 (67%), Positives = 68/84 (80%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE LRK+FIGGL + TTDESL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 2 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 61
Query: 72 DDAMSNRPHNIDGRVVETKRAVPR 95
D AM+ RPH +DGRVVE KRAV R
Sbjct: 62 DAAMNARPHKVDGRVVEPKRAVSR 85
Score = 68.1 bits (165), Expect = 4e-16
Identities = 26/98 (26%), Positives = 53/98 (54%)
Query: 1 MKPRYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGF 60
R D + +++K+F+GG+ T + L+ +FEQ+G+I + +M D + + RGF
Sbjct: 82 AVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGF 141
Query: 61 GFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDVR 98
F+T+ + VD + + H ++G E ++A+ +
Sbjct: 142 AFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 179
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 70.2 bits (171), Expect = 9e-18
Identities = 14/87 (16%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVV-----MKDPITKRSRGFGFITYSEAKMV 71
R++++G + + T+E++ FF + + + + + F F+ +
Sbjct: 2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 61
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDVR 98
AM+ G+ ++ +R P D +
Sbjct: 62 TQAMAFDGIIFQGQSLKIRR--PHDYQ 86
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 67.7 bits (165), Expect = 7e-17
Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDP-ITKRSRGFGFITYSEAKM 70
+ ++ K+ + + ++ ++ F +GE+ V + K T RGFGF+ + +
Sbjct: 4 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQD 63
Query: 71 VDDAMSNRPHN--IDGRVVETKRAVPRD 96
A + H+ + GR + + A
Sbjct: 64 AKKAFNALCHSTHLYGRRLVLEWADSEV 91
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP
A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 64.4 bits (156), Expect = 1e-15
Identities = 24/79 (30%), Positives = 49/79 (62%)
Query: 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
+++K+F+GG+ T + L+ +FEQ+G+I + +M D + + RGF F+T+ + VD
Sbjct: 1 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 60
Query: 75 MSNRPHNIDGRVVETKRAV 93
+ + H ++G E ++A+
Sbjct: 61 VIQKYHTVNGHNCEVRKAL 79
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 64.8 bits (157), Expect = 1e-15
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
+ + K+F+GGL Y TTD SL+ +FE +G+I + VV+ D T +SRG+GF+T ++
Sbjct: 6 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 72 DDAMSNRPHNIDGRVVETKRAVPR 95
+ A + IDGR A
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLG 89
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 64.3 bits (156), Expect = 1e-15
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
VF+G T++ L+ FF Q+G+++DV + K R F F+T+++ ++
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPF-----RAFAFVTFADDQIAQSLCG 60
Query: 77 NRPHNIDGRVVETKRAVPRD 96
I G V A P+
Sbjct: 61 E-DLIIKGISVHISNAEPKH 79
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 63.9 bits (155), Expect = 2e-15
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
K+FIGGL D+ ++ +G + ++KD T S+G+ F Y + + D A++
Sbjct: 2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 61
Query: 77 N-RPHNIDGRVVETKRAVPRD 96
+ + + +RA
Sbjct: 62 GLNGMQLGDKKLLVQRASVGA 82
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 63.6 bits (154), Expect = 2e-15
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
K+F+GGL TT E ++ +FEQ+G++ D ++M D T R RGFGF+T+ +V+
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 60
Query: 78 RPHNIDGRVVETKRA 92
H I+ ++VE K+A
Sbjct: 61 HFHEINNKMVECKKA 75
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 62.7 bits (152), Expect = 7e-15
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKM 70
+E V++GGLD + ++ L F Q G +V+ + KD +T + +G+GF+ + +
Sbjct: 4 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 63
Query: 71 VDDAMSN-RPHNIDGRVVETKRAVPRD 96
D A+ + G+ + +A +
Sbjct: 64 ADYAIKIMDMIKLYGKPIRVNKASAHN 90
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 61.7 bits (149), Expect = 1e-14
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 19 VFIGGLDYRTTDESLQAFFEQWGEI-VDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
+FIG LD ++ L F +G I +M+DP T S+G+ FI ++ D A+
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 78 -RPHNIDGRVVETKRAVPRDVR 98
+ R + A +D +
Sbjct: 61 MNGQYLCNRPITVSYAFKKDSK 82
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 61.5 bits (148), Expect = 2e-14
Identities = 16/85 (18%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKM 70
+E + +FIG L+ + L+ + D+ V+ T +R FG++ + A+
Sbjct: 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVR-TGTNRKFGYVDFESAED 66
Query: 71 VDDAMSNRPHNIDGRVVETKRAVPR 95
++ A+ + G ++ ++ R
Sbjct: 67 LEKALELTGLKVFGNEIKLEKPKGR 91
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 60.8 bits (147), Expect = 3e-14
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
R +++GGL D+ L A F +G+I D+ + D T++ RGF F+ + A+ A+
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65
Query: 77 N-RPHNIDGRVVETKRAVPRDVR 98
N + GR + A P ++
Sbjct: 66 NMNESELFGRTIRVNLAKPMRIK 88
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 60.1 bits (145), Expect = 7e-14
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 5/84 (5%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVV--VMKDPITKRSRGFGFITY---SEAKMVD 72
++FIGG+ E + + E V V ++RGF F+ Y A M
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 73 DAMSNRPHNIDGRVVETKRAVPRD 96
+ + G + A P
Sbjct: 63 RKLMPGRIQLWGHQIAVDWAEPEI 86
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 60.1 bits (145), Expect = 8e-14
Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Query: 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKM 70
P F+G L Y T+ES++ FF + + +R +GFG+ + +
Sbjct: 12 KSPP--YTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDS 69
Query: 71 VDDAMSNRPHNIDGRVVETKRAVPRDVR 98
+ A+S ++ + + A +
Sbjct: 70 LLSALSLNEESLGNKRIRVDVADQAQDK 97
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 59.3 bits (143), Expect = 1e-13
Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 1/77 (1%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
+ + + + + + + FF + I V +K G + + A+
Sbjct: 10 TIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVI 69
Query: 77 NRP-HNIDGRVVETKRA 92
+ I R V+
Sbjct: 70 DLNDRPIGSRKVKLVLG 86
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 58.8 bits (142), Expect = 2e-13
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
+++G L T+ L F G I+ + V +D IT+RS G+ ++ + + + A+
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 78 RP-HNIDGRVVETKRA 92
I G+ V +
Sbjct: 62 MNFDVIKGKPVRIMWS 77
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 58.2 bits (140), Expect = 3e-13
Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS- 76
K++IG L T + L+ F + V+ G+ F+ Y + A+
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK------SGYAFVDYPDQNWAIRAIET 56
Query: 77 -NRPHNIDGRVVETKRAVPRDVR 98
+ + G+++E +V + +R
Sbjct: 57 LSGKVELHGKIMEVDYSVSKKLR 79
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 57.8 bits (139), Expect = 5e-13
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
K+F+GGL + T ++SL+ F ++G+I +VVV+KD T+RSRGFGF+T+ DAM
Sbjct: 6 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM 65
Query: 77 N-RPHNIDGRVVETKRAVPRD 96
++DGR + +A
Sbjct: 66 AMNGKSVDGRQIRVDQAGKSS 86
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 56.5 bits (136), Expect = 1e-12
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA-- 74
+++ L TD+ L F ++G IV +++D +T R RG F+ Y++ + +A
Sbjct: 7 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 66
Query: 75 -MSNRPHNIDGRVVETKRA 92
++N + + + A
Sbjct: 67 ALNNVIPEGGSQPLSVRLA 85
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 57.1 bits (137), Expect = 1e-12
Identities = 16/87 (18%), Positives = 37/87 (42%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
+ + V + GL + + E + FF + + + + RS G F+ ++ ++
Sbjct: 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIA 70
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDVR 98
+ A+ I R +E ++ +VR
Sbjct: 71 EKALKKHKERIGHRYIEIFKSSRAEVR 97
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 57.3 bits (138), Expect = 1e-12
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Query: 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVD 72
PE R ++I L Y+ T E + F ++G I ++ T +RG ++ Y +
Sbjct: 4 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQ---IRVGNTPETRGTAYVVYEDIFDAK 60
Query: 73 DAMSN-RPHNIDGRVVETKRAVPRDVR 98
+A + N+ R +
Sbjct: 61 NACDHLSGFNVCNRYLVVLYYNANRAF 87
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 57.1 bits (137), Expect = 1e-12
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKM 70
++ + VFI L + + +E+L +Q+G++ V V+ P T+ S+G F + +
Sbjct: 3 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEA 62
Query: 71 VDDAMSNRPHN-------IDGRVVETKRAVPRD 96
++ +DGR ++ AV RD
Sbjct: 63 AQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRD 95
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 56.4 bits (136), Expect = 2e-12
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 11 TEPESL-RKVFIGGLD-YRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEA 68
T+P S+ +VFIG L+ ++A F ++G+IV V +GF F+ Y
Sbjct: 9 TDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVH--------KGFAFVQYVNE 60
Query: 69 KMVDDAMSNRP-HNIDGRVVETKRAVPRDVR 98
+ A++ I G+V++ A V
Sbjct: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVN 91
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 56.3 bits (135), Expect = 2e-12
Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
++F+ L Y +++E L+ F +G + ++ D +TK+ +GF F+T+ + A +
Sbjct: 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYA 68
Query: 77 N-RPHNIDGRVVETKRAVPRD 96
GR++ + +
Sbjct: 69 EVDGQVFQGRMLHVLPSTIKK 89
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 55.9 bits (134), Expect = 3e-12
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
P+ + + GL TT+ L+ F ++G I DV ++ D ++RSRGF F+ +
Sbjct: 5 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDA 64
Query: 72 DDAMSN-RPHNIDGRVVE 88
+A +DGR +
Sbjct: 65 KEAKERANGMELDGRRIR 82
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 55.3 bits (133), Expect = 5e-12
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
+++G L + TT+E + F + G+I +++ D + K + GF F+ Y ++AM
Sbjct: 8 CTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMR 67
Query: 77 N-RPHNIDGRVVETKRAVPR 95
+D R++ T
Sbjct: 68 YINGTRLDDRIIRTDWDAGF 87
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 55.1 bits (132), Expect = 6e-12
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
+++ + + +R D L+ F Q+G+I+DV ++ + S+GFGF+T+ + D A
Sbjct: 12 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRARE 69
Query: 77 N-RPHNIDGRVVETKRAVPR 95
++GR +E A R
Sbjct: 70 KLHGTVVEGRKIEVNNATAR 89
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 54.9 bits (131), Expect = 1e-11
Identities = 10/82 (12%), Positives = 22/82 (26%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
I + + T + F E + V + + G + + +
Sbjct: 9 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSER 68
Query: 77 NRPHNIDGRVVETKRAVPRDVR 98
++GR D+R
Sbjct: 69 LHRKKLNGREAFVHVVTLEDMR 90
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 54.3 bits (130), Expect = 1e-11
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73
S++ +++ L T++E ++ F K+ R + F+ +S + +
Sbjct: 6 SSVKILYVRNLMLSTSEEMIEKEFNNIKPG------AVERVKKIRDYAFVHFSNREDAVE 59
Query: 74 AMSN-RPHNIDGRVVETKRAVPRD 96
AM +DG +E A P D
Sbjct: 60 AMKALNGKVLDGSPIEVTLAKPVD 83
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 54.4 bits (130), Expect = 1e-11
Identities = 19/97 (19%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
Query: 3 PRYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGF 62
P + EP + +++ L R T+ L + F ++ E + +T R RG F
Sbjct: 7 PMFSSYNPGEPN--KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAF 64
Query: 63 ITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPRDVR 98
IT+ ++ A+ + + G+++ + + R
Sbjct: 65 ITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQR 101
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 86
Score = 54.0 bits (129), Expect = 1e-11
Identities = 11/81 (13%), Positives = 25/81 (30%), Gaps = 2/81 (2%)
Query: 17 RKVFIGGLDYRTTDESL--QAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
R++ I L DE+L ++F + + F+ + + A
Sbjct: 5 REIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA 64
Query: 75 MSNRPHNIDGRVVETKRAVPR 95
+ + R + A +
Sbjct: 65 LQMNRSLLGNREISVSLADKK 85
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 54.3 bits (130), Expect = 1e-11
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFG-FITYSEAKMVDDAMS 76
+FI LD +++L F +G I+ V+ D + GF F T A+ + M+
Sbjct: 10 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 69
Query: 77 NRPHNIDGRVVETKRAVPRDVR 98
++ R V R R R
Sbjct: 70 G--MLLNDRKVFVGRFKSRKER 89
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 53.8 bits (129), Expect = 1e-11
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
S + + L TD L A F G I +M+D T S G+ F+ ++ A
Sbjct: 1 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRA 60
Query: 75 MSN-RPHNIDGRVVETKRAVP 94
+ + + ++ A P
Sbjct: 61 IKVLNGITVRNKRLKVSYARP 81
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 53.9 bits (129), Expect = 2e-11
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
+++ GL T + L+ F Q+G I+ ++ D +T SRG GFI + + ++A+
Sbjct: 7 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 66
Query: 77 N-RPHNIDGR 85
G
Sbjct: 67 GLNGQKPSGA 76
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 54.3 bits (130), Expect = 2e-11
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSE 67
S+ PE +FI L D+ L F +G +V V D T S+ FGF++Y
Sbjct: 11 SQKEGPEG-ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDN 69
Query: 68 AKMVDDAMSN-RPHNIDGRVVETKRAVPRDVR 98
A+ + I + ++ + ++
Sbjct: 70 PVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 101
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 53.1 bits (127), Expect = 3e-11
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 20 FIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDP---ITKRSRGFGFITYSEAKMVDDAMS 76
FI L++ TT+E+L+ F + G I + K S GFGF+ Y + + A+
Sbjct: 2 FIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALK 61
Query: 77 N-RPHNIDGRVVETKRAVPRD 96
+ H +DG +E + +
Sbjct: 62 QLQGHTVDGHKLEVRISERAT 82
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 53.1 bits (127), Expect = 3e-11
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
+ + L T + LQ F +G I + + KD T +S+GF FI++ + A++
Sbjct: 9 ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA 68
Query: 77 N-RPHNIDGRVVETKRAVPR 95
D ++ + A P
Sbjct: 69 GVSGFGYDHLILNVEWAKPS 88
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 53.1 bits (127), Expect = 4e-11
Identities = 13/80 (16%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
++++G L + ++ F ++G I D+ + F F+ + + + +DA+
Sbjct: 15 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGP---PFAFVEFEDPRDAEDAVY 71
Query: 77 NRP-HNIDGRVVETKRAVPR 95
R ++ DG + +
Sbjct: 72 GRDGYDYDGYRLRVEFPRSG 91
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 53.8 bits (128), Expect = 5e-11
Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Query: 1 MKPRYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGF 60
+ EP+ LR + + + + L+ FE++G I V ++ D T++SRG+
Sbjct: 27 QQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGY 86
Query: 61 GFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPRDVR 98
GF+ + A++ NI + ++ A R
Sbjct: 87 GFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQR 125
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 52.7 bits (126), Expect = 5e-11
Identities = 18/95 (18%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Query: 2 KPRYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFG 61
+ R++D V+ GG+ TD+ ++ F +G+I+++ V + +
Sbjct: 4 QLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG------YS 57
Query: 62 FITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPR 95
F+ +S + A+ + I+G VV+
Sbjct: 58 FVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 92
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 52.9 bits (126), Expect = 6e-11
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVV--------MKDPITKRSRGFGFI 63
E +++ GL+ T + L FF+Q G + D T + +G +
Sbjct: 4 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATV 63
Query: 64 TYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPRDVR 98
+Y + A+ + G ++ A +
Sbjct: 64 SYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPM 99
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 52.7 bits (126), Expect = 6e-11
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 6 DDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITY 65
D + + R + L + T++ L+ FE EI +S+G +I +
Sbjct: 6 DPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEI-----RLVSQDGKSKGIAYIEF 60
Query: 66 SEAKMVDDAMSN-RPHNIDGRVVETKRAVPR 95
+ + + IDGR V +
Sbjct: 61 KSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 51.1 bits (122), Expect = 2e-10
Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 8/81 (9%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
V + G + L F Q+G I+ V+ + I Y A+S
Sbjct: 6 WVTVFGFPQASASYILLQFA-QYGNILKHVMSNT------GNWMHIRYQSKLQARKALSK 58
Query: 78 RPHNIDGRV-VETKRAVPRDV 97
+ + K + ++V
Sbjct: 59 DGRIFGESIMIGVKPCIDKNV 79
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 51.8 bits (123), Expect = 2e-10
Identities = 12/88 (13%), Positives = 35/88 (39%)
Query: 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKM 70
+ E+ V++ GL + ++ + FF++ + D + + ++ G GF+ +
Sbjct: 13 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEAD 72
Query: 71 VDDAMSNRPHNIDGRVVETKRAVPRDVR 98
A+ + R ++ + +
Sbjct: 73 YKAALCRHKQYMGNRFIQVHPITKKGML 100
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 50.9 bits (121), Expect = 2e-10
Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
+F+ + ++ +Q F +GEI ++ + D T S+G+ + Y K A
Sbjct: 8 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE 67
Query: 77 N-RPHNIDGRVVETKRAVPR 95
I G+ ++ +
Sbjct: 68 ALNGAEIMGQTIQVDWCFVK 87
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 50.8 bits (121), Expect = 3e-10
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFG-FITYSEAKMVDDAM 75
R +++G L T+ + F Q G ++ + + F F + +A AM
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 76 SNRPHNIDGRVVETKRAVPRDVR 98
+ I G+ V+ A +
Sbjct: 69 NG--RKILGKEVKVNWATTPSSQ 89
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 50.9 bits (121), Expect = 3e-10
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 2/87 (2%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
+ + V + GL YR T+ + FF + + + R G + ++ +
Sbjct: 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPD--GRVTGEADVEFATHEDA 68
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDVR 98
AM+ N+ R VE
Sbjct: 69 VAAMAKDKANMQHRYVELFLNSTAGTS 95
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 50.1 bits (119), Expect = 4e-10
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
S + + L T E ++ F GEI +++D IT +S G+GF+ Y + K + A
Sbjct: 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 60
Query: 75 MSN-RPHNIDGRVVETKRAVP 94
++ + + ++ A P
Sbjct: 61 INTLNGLRLQTKTIKVSYARP 81
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 49.2 bits (117), Expect = 8e-10
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
K+ + LD+ +D +Q F ++G + V D + RS G + + AM
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQ 60
Query: 78 -RPHNIDGRVVETKRA 92
+DGR + +
Sbjct: 61 YNGVPLDGRPMNIQLV 76
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 49.4 bits (117), Expect = 1e-09
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73
SLR VF+G + Y T+E L+ F + G +V ++ D T + +G+GF Y + +
Sbjct: 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 65
Query: 74 AMSNRP-HNIDGRVVETKRAVPRDVR 98
AM N GR + A +
Sbjct: 66 AMRNLNGREFSGRALRVDNAASEKNK 91
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 48.0 bits (114), Expect = 2e-09
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
++F+G L T+E ++ FE++G+ +V + KD FGFI + + A
Sbjct: 9 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG------FGFIRLETRTLAEIAKV 62
Query: 77 NRP-HNIDGRVVETKRAVPR 95
+ G+ + + A
Sbjct: 63 ELDNMPLRGKQLRVRFACHS 82
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 47.9 bits (113), Expect = 3e-09
Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 1/79 (1%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
+++ T +++ + + + + SR F +I + + +
Sbjct: 2 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVE 61
Query: 77 N-RPHNIDGRVVETKRAVP 94
I+G + TK + P
Sbjct: 62 KLNGLKIEGYTLVTKVSNP 80
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 75
Score = 46.8 bits (110), Expect = 7e-09
Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 2/75 (2%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
V + L + +F+ G I+ V V F I ++ A++
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFR--FARIEFARYDGALAAITK 59
Query: 78 RPHNIDGRVVETKRA 92
+ +
Sbjct: 60 THKVVGQNEIIVSHL 74
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 47.3 bits (112), Expect = 9e-09
Identities = 8/90 (8%), Positives = 30/90 (33%), Gaps = 7/90 (7%)
Query: 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVD 72
+ ++ + L Y T + L F ++G ++ ++ ++ + Y++
Sbjct: 4 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQ 59
Query: 73 DA---MSNRPHNIDGRVVETKRAVPRDVRL 99
A + + + + + +
Sbjct: 60 HAKLSLDGQNIYNACCTLRIDFSKLTSLNV 89
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 45.4 bits (107), Expect = 3e-08
Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 9/86 (10%)
Query: 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVD 72
P +++ G D T L+ F +G I+D+ + F+TY + + D
Sbjct: 2 PRKGNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPPR------NCAFVTYEKMESAD 53
Query: 73 DAMSN-RPHNIDGRVVETKRAVPRDV 97
A++ ++ ++ A + +
Sbjct: 54 QAVAELNGTQVESVQLKVNIARKQPM 79
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 44.4 bits (104), Expect = 7e-08
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 17 RKVFIGGLDYRTTDESLQAFFE---QWGEIVDVVVMKDPITKRS---RGFGFITYSEAKM 70
VF+ GL R D + E ++G+I VV+ S ++TY ++
Sbjct: 9 NLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSED 68
Query: 71 VDDAMSN-RPHNIDGRVV 87
A+ +DGR +
Sbjct: 69 ALRAIQCVNNVVVDGRTL 86
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 44.0 bits (103), Expect = 1e-07
Identities = 11/76 (14%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
R V+I G T + ++ + E G++++ + M+ + K +G F+ + + +
Sbjct: 7 RSVYIKGFPTDATLDDIKEWLEDKGQVLN-IQMRRTLHKAFKGSIFVVFDSIESAKKFVE 65
Query: 77 NRPHNIDGRVVETKRA 92
+
Sbjct: 66 TPGQKYKETDLLILFK 81
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 43.5 bits (102), Expect = 1e-07
Identities = 14/84 (16%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 17 RKVFIGGLDYRTTDESLQ----AFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVD 72
++I L+ + + L+ A F ++G+I+D + + + RG F+ + E
Sbjct: 4 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILD---ILVSRSLKMRGQAFVIFKEVSSAT 60
Query: 73 DAMSN-RPHNIDGRVVETKRAVPR 95
+A+ + + + + + A
Sbjct: 61 NALRSMQGFPFYDKPMRIQYAKTD 84
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 42.9 bits (100), Expect = 5e-07
Identities = 16/77 (20%), Positives = 23/77 (29%), Gaps = 2/77 (2%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
E F G LD +T E L F GEI + ++ EA
Sbjct: 7 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKE--KAKEALGK 64
Query: 72 DDAMSNRPHNIDGRVVE 88
+N + + V
Sbjct: 65 AKDANNGNLQLRNKEVT 81
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 41.3 bits (96), Expect = 9e-07
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 19 VFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN- 77
++I GL TTD+ L + +G+IV + D T + +G+GF+ + A++
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 78 RPHNIDGRVV 87
+ + ++
Sbjct: 61 KASGVQAQMA 70
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 41.6 bits (97), Expect = 1e-06
Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 11/97 (11%)
Query: 4 RYDDSKC-TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGF 62
R++ + + V GGL + L E+ G + +++ + + F
Sbjct: 7 RHEGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP------YSF 60
Query: 63 ITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDVRL 99
Y + A ++G+ V + L
Sbjct: 61 ARYRTTEESKRAY----VTLNGKEVVDDLGQKITLYL 93
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 39.7 bits (92), Expect = 6e-06
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
++++GGL T+ +L F+++G I + +K + + A+ M
Sbjct: 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAY---IQYESLDAAQAACAKMR 74
Query: 77 NRPHNIDGRVVETKRAVPR 95
P R + A
Sbjct: 75 GFPLGGPDRRLRVDFAKSG 93
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 39.6 bits (92), Expect = 7e-06
Identities = 9/74 (12%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
++ V + +E E++GE+ ++ V + G ++ + + + A
Sbjct: 26 AVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKA 84
Query: 75 MSN-RPHNIDGRVV 87
+ + +G+ +
Sbjct: 85 VIDLNNRWFNGQPI 98
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 39.4 bits (91), Expect = 9e-06
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 3/82 (3%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
V + GL + L E++G I V++M F AK +
Sbjct: 16 PVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQAL---VEFENIDSAKECVTFAA 72
Query: 77 NRPHNIDGRVVETKRAVPRDVR 98
+ P I G+ + + +
Sbjct: 73 DVPVYIAGQQAFFNYSTSKRIT 94
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 39.0 bits (90), Expect = 1e-05
Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 2/83 (2%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
++I L ++ L+ + +G++ + + SRG GF + + +
Sbjct: 19 TNLYISNLPLSMDEQELENMLKPFGQV-ISTRILRDSSGTSRGVGFARMESTEKCEAVIG 77
Query: 77 N-RPHNIDGRVVETKRAVPRDVR 98
+ I + P +
Sbjct: 78 HFNGKFIKTPPGVSAPTEPLLCK 100
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 37.0 bits (85), Expect = 5e-05
Identities = 7/80 (8%), Positives = 26/80 (32%), Gaps = 8/80 (10%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
+ + L + + + + + +K R++ F+T + +A+
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYD-------LKYCYVDRNKRTAFVTLLNGEQAQNAIQ 58
Query: 77 N-RPHNIDGRVVETKRAVPR 95
++ G+ + +
Sbjct: 59 MFHQYSFRGKDLIVQLQPTD 78
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 37.1 bits (85), Expect = 6e-05
Identities = 12/88 (13%), Positives = 24/88 (27%), Gaps = 8/88 (9%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
S +V + GL + + L+ + + G G + Y + +
Sbjct: 11 TRRSDFRVLVSGLPPSGSWQDLKDHMREA-------GDVCYADVQKDGMGMVEYLRKEDM 63
Query: 72 DDAMSN-RPHNIDGRVVETKRAVPRDVR 98
+ A+ ET R
Sbjct: 64 EYALRKLDDTKFRSHEGETSYIRVYPER 91
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 104
Score = 36.7 bits (84), Expect = 8e-05
Identities = 9/87 (10%), Positives = 20/87 (22%), Gaps = 12/87 (13%)
Query: 18 KVFIGGLD-----YRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVD 72
+ + T ++ F + + K I +S
Sbjct: 7 GLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAA 60
Query: 73 DAMSN-RPHNIDGRVVETKRAVPRDVR 98
DA G+ ++ A +
Sbjct: 61 DARLRLHKTEFLGKEMKLYFAQTLHIG 87
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 35.5 bits (81), Expect = 3e-04
Identities = 15/85 (17%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 17 RKVFIGGLD-YRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAM 75
+ + L+ R T +SL F +G++ V ++ + + ++ AM
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE-----NALVQMADGNQAQLAM 57
Query: 76 SN-RPHNIDGRVVETKRAVPRDVRL 99
S+ H + G+ + + ++V+L
Sbjct: 58 SHLNGHKLHGKPIRITLSKHQNVQL 82
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 33.7 bits (77), Expect = 0.001
Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 9/73 (12%)
Query: 26 YRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYS---EAKMVDDAMSNRPHNI 82
E L+ ++G+I +++ G +++ EA + R
Sbjct: 29 LNEIREDLRVECSKFGQIRKLLLFDR----HPDGVASVSFRDPEEADYCIQTLDGR--WF 82
Query: 83 DGRVVETKRAVPR 95
GR + +
Sbjct: 83 GGRQITAQAWDGT 95
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 33.6 bits (76), Expect = 0.001
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAM 75
+ + + ++E L+ F G VV ++ R I + A+
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNGG----VVKGFKFFQKDRKMALIQMGSVEEAVQAL 65
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein
2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 32.9 bits (74), Expect = 0.002
Identities = 10/82 (12%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
R + I L T+ + A +G++ +++++K T A + + S
Sbjct: 9 RVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLE---LATEEAAITMVNYYS 65
Query: 77 NRPHNIDGRVVETKRAVPRDVR 98
++ + + + + ++++
Sbjct: 66 AVTPHLRNQPIYIQYSNHKELK 87
>d3begb1 d.58.7.1 (B:121-207) Splicing factor,
arginine/serine-rich 1, SFRS1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 87
Score = 31.4 bits (70), Expect = 0.007
Identities = 9/80 (11%), Positives = 21/80 (26%), Gaps = 8/80 (10%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
+V + GL + + L+ + G G + + + + A+
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREA-------GDVCYADVYRDGTGVVEFVRKEDMTYAVRK 54
Query: 78 -RPHNIDGRVVETKRAVPRD 96
ET +
Sbjct: 55 LDNTKFRSHEGETAYIRVKV 74
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 29.5 bits (65), Expect = 0.042
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 6/70 (8%)
Query: 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSE 67
S + S + L T +Q F ++G + V++ + + + E
Sbjct: 2 SSGSSGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGG------ITAIVEFLE 55
Query: 68 AKMVDDAMSN 77
A +
Sbjct: 56 PLEARKAFRH 65
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 29.1 bits (64), Expect = 0.049
Identities = 12/85 (14%), Positives = 31/85 (36%), Gaps = 4/85 (4%)
Query: 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSE 67
++ +P + + +F+ L T + L F Q+ +V ++ + F T +
Sbjct: 1 AQTEQPPN-QILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFT--TELQ 57
Query: 68 AKMVDDAMSNRPHNIDGRVVETKRA 92
+ +A+ ++ A
Sbjct: 58 SNAAKEALQGFKIT-PTHAMKITFA 81
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 27.6 bits (60), Expect = 0.12
Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 9/82 (10%)
Query: 19 VFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNR 78
+ I GL T++ + + +K + +G F+T + + A++
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDY-------ELKYCFVDKYKGTAFVTLLNGEQAEAAINTF 53
Query: 79 P-HNIDGRVVETKRAVPRDVRL 99
+ R + + P D L
Sbjct: 54 HQSRLRERELSVQLQ-PTDALL 74
>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase
{Escherichia coli [TaxId: 562]}
Length = 206
Score = 26.9 bits (58), Expect = 0.51
Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 13/95 (13%)
Query: 14 ESLRKVFIGGLDYRTTDE----SLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAK 69
ESLR +F G T + L A +V V D + + + S K
Sbjct: 2 ESLRIIFAG------TPDFAARHLDALLSSGHNVVGVFTQPD---RPAGRGKKLMPSPVK 52
Query: 70 MVDDAMSNRPHNIDGRVVETKRAVPRDVRLYLVFC 104
++ + + + + +++ ++
Sbjct: 53 VLAEEKGLPVFQPVSLRPQENQQLVAELQADVMVV 87
>d2olua2 e.3.1.1 (A:293-692) Penicillin-binding protein 2, PBP2
{Staphylococcus aureus [TaxId: 1280]}
Length = 400
Score = 24.7 bits (52), Expect = 3.4
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 12 EPESLRKVFIGGLDYRTT-DESLQAFFEQ 39
+ E+L V G+ T D+ +Q +
Sbjct: 25 KDENLGNVLQSGIKIYTNMDKDVQKTLQN 53
>d1m0wa2 d.142.1.6 (A:6-210,A:324-491) Eukaryotic glutathione
synthetase ATP-binding domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 373
Score = 23.6 bits (51), Expect = 7.7
Identities = 4/38 (10%), Positives = 16/38 (42%)
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDVRLYL 101
T + D + + ++ +++ + ++ RL +
Sbjct: 84 TTEALALSDSEFTGKLWSLYLATLKSAQYKKQNFRLGI 121
>d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione
reductase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 230
Score = 23.7 bits (50), Expect = 7.9
Identities = 5/38 (13%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPI 53
L + ++E + W + + + ++PI
Sbjct: 184 LAPQISFAPEI-ASEEERKGMVAAWSQRLQTIWKEEPI 220
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.140 0.417
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 433,935
Number of extensions: 17929
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 93
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.5 bits)