BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13068
(950 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EFO|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
SYNTAXIN 5
Length = 765
Score = 311 bits (797), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 139/197 (70%), Positives = 168/197 (85%)
Query: 748 HGAPIPQGGRGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIM 807
H APIPQGGRG IQF+T YQ SG++++RVTTIARNWADA TQ+ +I++ FDQEAAA++M
Sbjct: 467 HNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILM 526
Query: 808 GRMVVNRAEQDDGPDVMRWADRTLIRLCQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRR 867
R+ + RAE ++GPDV+RW DR LIRLCQKFG Y+KDDP SF+ E F +YPQFM+HLRR
Sbjct: 527 ARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRR 586
Query: 868 SQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDC 927
S FLQVFNNSPDE+SYYRH MR+DL+QSLIMIQP+LY+Y F+GPP PVLLD+SSI D
Sbjct: 587 SSFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADR 646
Query: 928 ILLMDTFFQLLIFHGEV 944
ILLMDTFFQ+LI+HGE
Sbjct: 647 ILLMDTFFQILIYHGET 663
Score = 203 bits (516), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 85/121 (70%), Positives = 104/121 (85%)
Query: 192 MTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLL 251
MTTY EF QNEERDG+R +WNVWPSS+LEA+R+V+PV L+ PLKE+PDLPP+QYEP+L
Sbjct: 1 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVL 60
Query: 252 CMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYT 311
C R CRA+LNPLCQVDY++KLW CNFC+QRN FPP YA I+E +QPAEL PQF++IEY
Sbjct: 61 CSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYV 120
Query: 312 I 312
+
Sbjct: 121 V 121
Score = 166 bits (419), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 82/138 (59%), Positives = 95/138 (68%), Gaps = 29/138 (21%)
Query: 519 CQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRTLLIHLPHY 578
CQKFG Y+KDDP SF+ E F +YPQFM+HLRRS FLQ
Sbjct: 554 CQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQ---------------------- 591
Query: 579 SRFQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKP 638
VFNNSPDE+SYYRH MR+DL+QSLIMIQP+LY+Y F+GPP PVLLD+SSI
Sbjct: 592 -------VFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILA 644
Query: 639 DCILLMDTFFQLLIFHGE 656
D ILLMDTFFQ+LI+HGE
Sbjct: 645 DRILLMDTFFQILIYHGE 662
Score = 129 bits (324), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 54/75 (72%), Positives = 65/75 (86%)
Query: 1 MTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLL 60
MTTY EF QNEERDG+R +WNVWPSS+LEA+R+V+PV L+ PLKE+PDLPP+QYEP+L
Sbjct: 1 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVL 60
Query: 61 CMRNQCRAILNPLCQ 75
C R CRA+LNPLCQ
Sbjct: 61 CSRTTCRAVLNPLCQ 75
Score = 126 bits (317), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 63/73 (86%)
Query: 352 PNLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPA 411
P+LPP+QYEP+LC R CRA+LNPLCQVDY++KLW CNFC+QRN FPP YA I+E +QPA
Sbjct: 49 PDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPA 108
Query: 412 ELHPQFTTIEYTI 424
EL PQF++IEY +
Sbjct: 109 ELLPQFSSIEYVV 121
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 46/62 (74%)
Query: 656 EEPIRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNA 715
+ PIRS +DI K N KY K TKH+E LA RAA GH IDIY+CALDQTGLLEMK C N
Sbjct: 307 KTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNL 366
Query: 716 TG 717
TG
Sbjct: 367 TG 368
>pdb|3EG9|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
MEMBRIN
pdb|3EGD|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 764
Score = 311 bits (797), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 139/197 (70%), Positives = 168/197 (85%)
Query: 748 HGAPIPQGGRGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIM 807
H APIPQGGRG IQF+T YQ SG++++RVTTIARNWADA TQ+ +I++ FDQEAAA++M
Sbjct: 467 HNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILM 526
Query: 808 GRMVVNRAEQDDGPDVMRWADRTLIRLCQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRR 867
R+ + RAE ++GPDV+RW DR LIRLCQKFG Y+KDDP SF+ E F +YPQFM+HLRR
Sbjct: 527 ARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRR 586
Query: 868 SQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDC 927
S FLQVFNNSPDE+SYYRH MR+DL+QSLIMIQP+LY+Y F+GPP PVLLD+SSI D
Sbjct: 587 SSFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADR 646
Query: 928 ILLMDTFFQLLIFHGEV 944
ILLMDTFFQ+LI+HGE
Sbjct: 647 ILLMDTFFQILIYHGET 663
Score = 203 bits (516), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 85/121 (70%), Positives = 104/121 (85%)
Query: 192 MTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLL 251
MTTY EF QNEERDG+R +WNVWPSS+LEA+R+V+PV L+ PLKE+PDLPP+QYEP+L
Sbjct: 1 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVL 60
Query: 252 CMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYT 311
C R CRA+LNPLCQVDY++KLW CNFC+QRN FPP YA I+E +QPAEL PQF++IEY
Sbjct: 61 CSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYV 120
Query: 312 I 312
+
Sbjct: 121 V 121
Score = 166 bits (419), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 82/138 (59%), Positives = 95/138 (68%), Gaps = 29/138 (21%)
Query: 519 CQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRTLLIHLPHY 578
CQKFG Y+KDDP SF+ E F +YPQFM+HLRRS FLQ
Sbjct: 554 CQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQ---------------------- 591
Query: 579 SRFQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKP 638
VFNNSPDE+SYYRH MR+DL+QSLIMIQP+LY+Y F+GPP PVLLD+SSI
Sbjct: 592 -------VFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILA 644
Query: 639 DCILLMDTFFQLLIFHGE 656
D ILLMDTFFQ+LI+HGE
Sbjct: 645 DRILLMDTFFQILIYHGE 662
Score = 129 bits (324), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 54/75 (72%), Positives = 65/75 (86%)
Query: 1 MTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLL 60
MTTY EF QNEERDG+R +WNVWPSS+LEA+R+V+PV L+ PLKE+PDLPP+QYEP+L
Sbjct: 1 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVL 60
Query: 61 CMRNQCRAILNPLCQ 75
C R CRA+LNPLCQ
Sbjct: 61 CSRTTCRAVLNPLCQ 75
Score = 126 bits (317), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 63/73 (86%)
Query: 352 PNLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPA 411
P+LPP+QYEP+LC R CRA+LNPLCQVDY++KLW CNFC+QRN FPP YA I+E +QPA
Sbjct: 49 PDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPA 108
Query: 412 ELHPQFTTIEYTI 424
EL PQF++IEY +
Sbjct: 109 ELLPQFSSIEYVV 121
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 46/62 (74%)
Query: 656 EEPIRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNA 715
+ PIRS +DI K N KY K TKH+E LA RAA GH IDIY+CALDQTGLLEMK C N
Sbjct: 307 KTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNL 366
Query: 716 TG 717
TG
Sbjct: 367 TG 368
>pdb|2NUP|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 769
Score = 311 bits (797), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 139/197 (70%), Positives = 168/197 (85%)
Query: 748 HGAPIPQGGRGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIM 807
H APIPQGGRG IQF+T YQ SG++++RVTTIARNWADA TQ+ +I++ FDQEAAA++M
Sbjct: 471 HNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILM 530
Query: 808 GRMVVNRAEQDDGPDVMRWADRTLIRLCQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRR 867
R+ + RAE ++GPDV+RW DR LIRLCQKFG Y+KDDP SF+ E F +YPQFM+HLRR
Sbjct: 531 ARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRR 590
Query: 868 SQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDC 927
S FLQVFNNSPDE+SYYRH MR+DL+QSLIMIQP+LY+Y F+GPP PVLLD+SSI D
Sbjct: 591 SSFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADR 650
Query: 928 ILLMDTFFQLLIFHGEV 944
ILLMDTFFQ+LI+HGE
Sbjct: 651 ILLMDTFFQILIYHGET 667
Score = 204 bits (518), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 85/123 (69%), Positives = 105/123 (85%)
Query: 190 ISMTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEP 249
+ MTTY EF QNEERDG+R +WNVWPSS+LEA+R+V+PV L+ PLKE+PDLPP+QYEP
Sbjct: 3 MGMTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEP 62
Query: 250 LLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIE 309
+LC R CRA+LNPLCQVDY++KLW CNFC+QRN FPP YA I+E +QPAEL PQF++IE
Sbjct: 63 VLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIE 122
Query: 310 YTI 312
Y +
Sbjct: 123 YVV 125
Score = 166 bits (419), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 82/138 (59%), Positives = 95/138 (68%), Gaps = 29/138 (21%)
Query: 519 CQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRTLLIHLPHY 578
CQKFG Y+KDDP SF+ E F +YPQFM+HLRRS FLQ
Sbjct: 558 CQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQ---------------------- 595
Query: 579 SRFQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKP 638
VFNNSPDE+SYYRH MR+DL+QSLIMIQP+LY+Y F+GPP PVLLD+SSI
Sbjct: 596 -------VFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILA 648
Query: 639 DCILLMDTFFQLLIFHGE 656
D ILLMDTFFQ+LI+HGE
Sbjct: 649 DRILLMDTFFQILIYHGE 666
Score = 129 bits (324), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 54/75 (72%), Positives = 65/75 (86%)
Query: 1 MTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLL 60
MTTY EF QNEERDG+R +WNVWPSS+LEA+R+V+PV L+ PLKE+PDLPP+QYEP+L
Sbjct: 5 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVL 64
Query: 61 CMRNQCRAILNPLCQ 75
C R CRA+LNPLCQ
Sbjct: 65 CSRTTCRAVLNPLCQ 79
Score = 126 bits (317), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 63/73 (86%)
Query: 352 PNLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPA 411
P+LPP+QYEP+LC R CRA+LNPLCQVDY++KLW CNFC+QRN FPP YA I+E +QPA
Sbjct: 53 PDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPA 112
Query: 412 ELHPQFTTIEYTI 424
EL PQF++IEY +
Sbjct: 113 ELLPQFSSIEYVV 125
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 46/62 (74%)
Query: 656 EEPIRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNA 715
+ PIRS +DI K N KY K TKH+E LA RAA GH IDIY+CALDQTGLLEMK C N
Sbjct: 311 KTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNL 370
Query: 716 TG 717
TG
Sbjct: 371 TG 372
>pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|C Chain C, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2V|A Chain A, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 768
Score = 249 bits (635), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 149/373 (39%), Positives = 199/373 (53%), Gaps = 82/373 (21%)
Query: 651 LIFHGE--EPIRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDI------------ 696
LI + E +P+RSH+DI + ++ K A K Y +A R A GH +DI
Sbjct: 298 LIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSE 357
Query: 697 -----------------YSCAL-----------DQTGLLEMKLCCNATGKPSHVL----- 723
+S A+ D+ G L+M N K S L
Sbjct: 358 MKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAKDEEGYLKMAFNGNMAVKTSKDLKVQGL 417
Query: 724 ----IAIEFAQPSPMLKAQKRLGST----------------------TAAHGAPIPQGGR 757
A++ + + +++ +G+T TAA+ P+
Sbjct: 418 IGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFFEIANTAANSNPMMSAPG 477
Query: 758 GC-------IQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRM 810
QFIT YQ SG ++RVTT+A T I++ FDQEAAAV+M R+
Sbjct: 478 SADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLPFGTPA--IAASFDQEAAAVLMARI 535
Query: 811 VVNRAEQDDGPDVMRWADRTLIRLCQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQF 870
V++AE DDG DV+RW DRTLI+LCQK+ YNKDDP SF+L NF +YPQF Y+LRRSQF
Sbjct: 536 AVHKAETDDGADVIRWLDRTLIKLCQKYADYNKDDPQSFRLAPNFSLYPQFTYYLRRSQF 595
Query: 871 LQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDCILL 930
L VFNNSPDET++YRH+ RED + SLIMIQP L S+ P PVLLD+ S+KP+ ILL
Sbjct: 596 LSVFNNSPDETAFYRHIFTREDTTNSLIMIQPTLTSFSMEDDPQPVLLDSISVKPNTILL 655
Query: 931 MDTFFQLLIFHGE 943
+DTFF +LI+HGE
Sbjct: 656 LDTFFFILIYHGE 668
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/139 (51%), Positives = 87/139 (62%), Gaps = 29/139 (20%)
Query: 519 CQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRTLLIHLPHY 578
CQK+ YNKDDP SF+L NF +YPQF Y+LRRSQFL V
Sbjct: 560 CQKYADYNKDDPQSFRLAPNFSLYPQFTYYLRRSQFLSV--------------------- 598
Query: 579 SRFQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKP 638
FNNSPDET++YRH+ RED + SLIMIQP L S+ P PVLLD+ S+KP
Sbjct: 599 --------FNNSPDETAFYRHIFTREDTTNSLIMIQPTLTSFSMEDDPQPVLLDSISVKP 650
Query: 639 DCILLMDTFFQLLIFHGEE 657
+ ILL+DTFF +LI+HGE+
Sbjct: 651 NTILLLDTFFFILIYHGEQ 669
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 74/112 (66%), Gaps = 2/112 (1%)
Query: 199 FYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCR 258
F NE+ +G+R TWNV+PS++ +A+ V+PVGCLY PLKE +L Y P++C C+
Sbjct: 3 FETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPYNPVVCSGPHCK 62
Query: 259 AILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEY 310
+ILNP C +D ++ W C C RN PPQY +++++ P EL Q TTIEY
Sbjct: 63 SILNPYCVIDPRNSSWSCPICNSRNHLPPQYTNLSQENMPLEL--QSTTIEY 112
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 47/67 (70%)
Query: 8 FYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCR 67
F NE+ +G+R TWNV+PS++ +A+ V+PVGCLY PLKE +L Y P++C C+
Sbjct: 3 FETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPYNPVVCSGPHCK 62
Query: 68 AILNPLC 74
+ILNP C
Sbjct: 63 SILNPYC 69
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 12/97 (12%)
Query: 359 YEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFT 418
Y P++C C++ILNP C +D ++ W C C RN PPQY +++++ P EL Q T
Sbjct: 51 YNPVVCSGPHCKSILNPYCVIDPRNSSWSCPICNSRNHLPPQYTNLSQENMPLEL--QST 108
Query: 419 TIEY------TIPLLY----SITYITENDNVIRRNEI 445
TIEY T+P ++ +T TEN + ++ + I
Sbjct: 109 TIEYITNKPVTVPPIFFFVVDLTSETENLDSLKESII 145
>pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 772
Score = 248 bits (633), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 149/373 (39%), Positives = 199/373 (53%), Gaps = 82/373 (21%)
Query: 651 LIFHGE--EPIRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDI------------ 696
LI + E +P+RSH+DI + ++ K A K Y +A R A GH +DI
Sbjct: 302 LIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSE 361
Query: 697 -----------------YSCAL-----------DQTGLLEMKLCCNATGKPSHVL----- 723
+S A+ D+ G L+M N K S L
Sbjct: 362 MKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAKDEEGYLKMAFNGNMAVKTSKDLKVQGL 421
Query: 724 ----IAIEFAQPSPMLKAQKRLGST----------------------TAAHGAPIPQGGR 757
A++ + + +++ +G+T TAA+ P+
Sbjct: 422 IGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFFEIANTAANSNPMMSAPG 481
Query: 758 GC-------IQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRM 810
QFIT YQ SG ++RVTT+A T I++ FDQEAAAV+M R+
Sbjct: 482 SADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLPFGTPA--IAASFDQEAAAVLMARI 539
Query: 811 VVNRAEQDDGPDVMRWADRTLIRLCQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQF 870
V++AE DDG DV+RW DRTLI+LCQK+ YNKDDP SF+L NF +YPQF Y+LRRSQF
Sbjct: 540 AVHKAETDDGADVIRWLDRTLIKLCQKYADYNKDDPQSFRLAPNFSLYPQFTYYLRRSQF 599
Query: 871 LQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDCILL 930
L VFNNSPDET++YRH+ RED + SLIMIQP L S+ P PVLLD+ S+KP+ ILL
Sbjct: 600 LSVFNNSPDETAFYRHIFTREDTTNSLIMIQPTLTSFSMEDDPQPVLLDSISVKPNTILL 659
Query: 931 MDTFFQLLIFHGE 943
+DTFF +LI+HGE
Sbjct: 660 LDTFFFILIYHGE 672
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/139 (51%), Positives = 87/139 (62%), Gaps = 29/139 (20%)
Query: 519 CQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRTLLIHLPHY 578
CQK+ YNKDDP SF+L NF +YPQF Y+LRRSQFL V
Sbjct: 564 CQKYADYNKDDPQSFRLAPNFSLYPQFTYYLRRSQFLSV--------------------- 602
Query: 579 SRFQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKP 638
FNNSPDET++YRH+ RED + SLIMIQP L S+ P PVLLD+ S+KP
Sbjct: 603 --------FNNSPDETAFYRHIFTREDTTNSLIMIQPTLTSFSMEDDPQPVLLDSISVKP 654
Query: 639 DCILLMDTFFQLLIFHGEE 657
+ ILL+DTFF +LI+HGE+
Sbjct: 655 NTILLLDTFFFILIYHGEQ 673
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 74/112 (66%), Gaps = 2/112 (1%)
Query: 199 FYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCR 258
F NE+ +G+R TWNV+PS++ +A+ V+PVGCLY PLKE +L Y P++C C+
Sbjct: 7 FETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPYNPVVCSGPHCK 66
Query: 259 AILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEY 310
+ILNP C +D ++ W C C RN PPQY +++++ P EL Q TTIEY
Sbjct: 67 SILNPYCVIDPRNSSWSCPICNSRNHLPPQYTNLSQENMPLEL--QSTTIEY 116
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 47/67 (70%)
Query: 8 FYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCR 67
F NE+ +G+R TWNV+PS++ +A+ V+PVGCLY PLKE +L Y P++C C+
Sbjct: 7 FETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPYNPVVCSGPHCK 66
Query: 68 AILNPLC 74
+ILNP C
Sbjct: 67 SILNPYC 73
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 12/97 (12%)
Query: 359 YEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFT 418
Y P++C C++ILNP C +D ++ W C C RN PPQY +++++ P EL Q T
Sbjct: 55 YNPVVCSGPHCKSILNPYCVIDPRNSSWSCPICNSRNHLPPQYTNLSQENMPLEL--QST 112
Query: 419 TIEY------TIPLLY----SITYITENDNVIRRNEI 445
TIEY T+P ++ +T TEN + ++ + I
Sbjct: 113 TIEYITNKPVTVPPIFFFVVDLTSETENLDSLKESII 149
>pdb|2YRC|A Chain A, Solution Structure Of The Zf-Sec23_sec24 From Human Sec23a
Length = 59
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 44/52 (84%)
Query: 248 EPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPA 299
EP+LC R CRA+LNPLCQVDY++KLW CNFC+QRN FPP YA I+E +QPA
Sbjct: 8 EPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPA 59
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 44/52 (84%)
Query: 360 EPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPA 411
EP+LC R CRA+LNPLCQVDY++KLW CNFC+QRN FPP YA I+E +QPA
Sbjct: 8 EPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPA 59
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 57 EPLLCMRNQCRAILNPLCQ 75
EP+LC R CRA+LNPLCQ
Sbjct: 8 EPVLCSRTTCRAVLNPLCQ 26
>pdb|2YRD|A Chain A, Solution Structure Of The Zf-Sec23_sec24 From Human Sec23a
Mutant V69a
Length = 59
Score = 90.1 bits (222), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 43/52 (82%)
Query: 248 EPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPA 299
EP+LC R CRA LNPLCQVDY++KLW CNFC+QRN FPP YA I+E +QPA
Sbjct: 8 EPVLCSRTTCRAALNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPA 59
Score = 90.1 bits (222), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 43/52 (82%)
Query: 360 EPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPA 411
EP+LC R CRA LNPLCQVDY++KLW CNFC+QRN FPP YA I+E +QPA
Sbjct: 8 EPVLCSRTTCRAALNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPA 59
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 15/19 (78%)
Query: 57 EPLLCMRNQCRAILNPLCQ 75
EP+LC R CRA LNPLCQ
Sbjct: 8 EPVLCSRTTCRAALNPLCQ 26
>pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide From The Snare Protein Bet1
pdb|1PD0|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide From The Snare Protein Sed5
(Yeast Syntaxin-5)
pdb|1PD1|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide Containing The Dxe Cargo
Sorting Signal Of Yeast Sys1 Protein
Length = 810
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 202 NEERDGIRCTWNVWP--SSKLEASRLVMPVGCL---YQPLKEKPDLPPLQYEPLLCMRNQ 256
N D IR T N P SS L+ S+L P G + YQ L + D PPL + L+ +
Sbjct: 60 NASPDYIRSTLNAVPKNSSLLKKSKL--PFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRR 117
Query: 257 CRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQ 288
CR+ +NP + + W CNFC N P Q
Sbjct: 118 CRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQ 149
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 355 PPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELH 414
PPL + L+ +CR+ +NP + + W CNFC N P Q +Q P +
Sbjct: 104 PPLNEDGLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQ----MDQSDPNDPK 159
Query: 415 PQF-------TTIEYTIPLLYSI 430
++ +EY P Y++
Sbjct: 160 SRYDRNEIKCAVMEYMAPKEYTL 182
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 11 NEERDGIRCTWNVWP--SSKLEASRLVMPVGCL---YQPLKEKPDLPPLQYEPLLCMRNQ 65
N D IR T N P SS L+ S+L P G + YQ L + D PPL + L+ +
Sbjct: 60 NASPDYIRSTLNAVPKNSSLLKKSKL--PFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRR 117
Query: 66 CRAILNPLC 74
CR+ +NP
Sbjct: 118 CRSYMNPFV 126
>pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 926
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 202 NEERDGIRCTWNVWP--SSKLEASRLVMPVGCL---YQPLKEKPDLPPLQYEPLLCMRNQ 256
N D IR T N P SS L+ S+L P G + YQ L + D PPL + L+ +
Sbjct: 176 NASPDYIRSTLNAVPKNSSLLKKSKL--PFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRR 233
Query: 257 CRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQ 288
CR+ +NP + + W CNFC N P Q
Sbjct: 234 CRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQ 265
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 355 PPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELH 414
PPL + L+ +CR+ +NP + + W CNFC N P Q +Q P +
Sbjct: 220 PPLNEDGLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQ----MDQSDPNDPK 275
Query: 415 PQF-------TTIEYTIPLLYSI 430
++ +EY P Y++
Sbjct: 276 SRYDRNEIKCAVMEYMAPKEYTL 298
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 11 NEERDGIRCTWNVWP--SSKLEASRLVMPVGCL---YQPLKEKPDLPPLQYEPLLCMRNQ 65
N D IR T N P SS L+ S+L P G + YQ L + D PPL + L+ +
Sbjct: 176 NASPDYIRSTLNAVPKNSSLLKKSKL--PFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRR 233
Query: 66 CRAILNPLC 74
CR+ +NP
Sbjct: 234 CRSYMNPFV 242
>pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b
Length = 751
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 206 DGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLC 265
D RCT P ++ ++ +P+G L P ++ LP + ++ R+ CR +NP
Sbjct: 41 DSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLTQLPVITSNTIVRCRS-CRTYINPFV 99
Query: 266 QVDYKSKLWVCNFCFQRNAFPPQ--YAAITEQHQPAELHP--QFTTIEY 310
+ W CN C++ N P + Y +T + P Q +T+E+
Sbjct: 100 SF-IDQRRWKCNLCYRVNDVPEEFMYNPLTRSYGEPHKRPEVQNSTVEF 147
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 63/149 (42%), Gaps = 5/149 (3%)
Query: 759 CIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQD 818
C Q Y + GE+++RV T+ + L + +G D +AA ++ M V+R+
Sbjct: 460 CFQTALLYTSSKGERRIRVHTLC---LPVVSSLADVYAGVDVQAAICLLANMAVDRSVSS 516
Query: 819 DGPDVMRWADRTLIRLCQKFGHYNKDDPHS-FQLPENFQMYPQFMYHLRRSQFLQVFNNS 877
D ++ +G + HS P + +++P ++ L + + + ++
Sbjct: 517 SLSDARDALVNAVVDSLSAYGSTVSNLQHSALMAPSSLKLFPLYVLALLKQKAFRTGTST 576
Query: 878 P-DETSYYRHVLMREDLSQSLIMIQPVLY 905
D+ Y + + L + MI P LY
Sbjct: 577 RLDDRVYAMCQIKSQPLVHLMKMIHPNLY 605
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 15 DGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNP 72
D RCT P ++ ++ +P+G L P ++ LP + ++ R+ CR +NP
Sbjct: 41 DSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLTQLPVITSNTIVRCRS-CRTYINP 97
>pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 748
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Query: 209 RCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQVD 268
RCT P ++ ++ +P+G L P K+ LP + ++ R+ CR +NP
Sbjct: 42 RCTLTSIPQTQALLNKAKLPLGLLLHPFKDLVQLPVVTSSTIVRCRS-CRTYINPFVSF- 99
Query: 269 YKSKLWVCNFCFQRNAFPPQ--YAAIT----EQHQPAELHPQFTTIEYTIP 313
+ W CN C++ N P + Y +T E H+ E+ Q TIE+ P
Sbjct: 100 LDQRRWKCNLCYRVNDVPEEFLYNPLTRVYGEPHRRPEV--QNATIEFMAP 148
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 18 RCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNP 72
RCT P ++ ++ +P+G L P K+ LP + ++ R+ CR +NP
Sbjct: 42 RCTLTSIPQTQALLNKAKLPLGLLLHPFKDLVQLPVVTSSTIVRCRS-CRTYINP 95
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 369 CRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQ--YAAIT----EQHQPAELHPQFTTIEY 422
CR +NP + W CN C++ N P + Y +T E H+ E+ Q TIE+
Sbjct: 89 CRTYINPFVSF-LDQRRWKCNLCYRVNDVPEEFLYNPLTRVYGEPHRRPEV--QNATIEF 145
Query: 423 TIPLLYSI 430
P Y +
Sbjct: 146 MAPSEYML 153
>pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 753
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 209 RCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQVD 268
RCT P ++ ++ +P+G L P K+ LP + ++ R+ CR +NP
Sbjct: 47 RCTLTSIPQTQALLNKAKLPLGLLLHPFKDLVQLPVVTSSTIVRCRS-CRTYINPFVSF- 104
Query: 269 YKSKLWVCNFCFQRNAFPPQ--YAAITEQHQPAELHP--QFTTIEYTIP 313
+ W CN C++ N P + Y +T + P Q TIE+ P
Sbjct: 105 LDQRRWKCNLCYRVNDVPEEFLYNPLTRVYGEPHRRPEVQNATIEFMAP 153
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 18 RCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNP 72
RCT P ++ ++ +P+G L P K+ LP + ++ R+ CR +NP
Sbjct: 47 RCTLTSIPQTQALLNKAKLPLGLLLHPFKDLVQLPVVTSSTIVRCRS-CRTYINP 100
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 369 CRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQ--YAAITEQHQPAELHP--QFTTIEYTI 424
CR +NP + W CN C++ N P + Y +T + P Q TIE+
Sbjct: 94 CRTYINPFVSF-LDQRRWKCNLCYRVNDVPEEFLYNPLTRVYGEPHRRPEVQNATIEFMA 152
Query: 425 PLLYSI 430
P Y +
Sbjct: 153 PSEYML 158
>pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c
pdb|3EH2|B Chain B, Crystal Structure Of The Human Copii-Coat Protein Sec24c
pdb|3EH2|C Chain C, Crystal Structure Of The Human Copii-Coat Protein Sec24c
Length = 766
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 208 IRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEP----------LLCMRNQC 257
IRCT P + A + +P+ + +PL LPP + P L C N+C
Sbjct: 46 IRCTSYNIPCTSDMAKQAQVPLAAVIKPLAR---LPPEEASPYVVDHGESGPLRC--NRC 100
Query: 258 RAILNPLCQVDYKSKLWVCNFCFQRNAFPPQY 289
+A + P Q + + C FC N PPQY
Sbjct: 101 KAYMCPFMQFIEGGRRFQCCFCSCINDVPPQY 132
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 361 PLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQY 401
PL C N+C+A + P Q + + C FC N PPQY
Sbjct: 94 PLRC--NRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQY 132
>pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
SYNTAXIN 5
pdb|3EG9|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
MEMBRIN
Length = 770
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 208 IRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKP-DLPPL------QYEPLLCMRNQCRAI 260
IRCT +P + A + +P+ + +P P + PL + P+ C N+C+A
Sbjct: 50 IRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGESGPVRC--NRCKAY 107
Query: 261 LNPLCQVDYKSKLWVCNFCFQRNAFPPQY 289
+ P Q + + C FC N PP Y
Sbjct: 108 MCPFMQFIEGGRRYQCGFCNCVNDVPPFY 136
>pdb|1W36|B Chain B, Recbcd:dna Complex
pdb|1W36|E Chain E, Recbcd:dna Complex
pdb|3K70|B Chain B, Crystal Structure Of The Complete Initiation Complex Of
Recbcd
pdb|3K70|E Chain E, Crystal Structure Of The Complete Initiation Complex Of
Recbcd
Length = 1180
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 25/88 (28%)
Query: 775 VRVTTIARNWADATTQLDHI--SSGFDQEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLI 832
R+ T+ + W DA +LD + SSG D R NR+ Q +W D
Sbjct: 227 ARIDTVKQQWRDAVGELDALIESSGID---------RRKFNRSNQ------AKWID---- 267
Query: 833 RLCQKFGHYNKDDPHSFQLPENFQMYPQ 860
K + +++ +S+QLPE+ + + Q
Sbjct: 268 ----KISAWAEEETNSYQLPESLEKFSQ 291
>pdb|1MUK|A Chain A, Reovirus Lambda3 Native Structure
pdb|1MWH|A Chain A, Reovirus Polymerase Lambda3 Bound To Mrna Cap Analog
pdb|1N1H|A Chain A, Initiation Complex Of Polymerase Lambda3 From Reovirus
pdb|1N35|A Chain A, Lambda3 Elongation Complex With Four Phosphodiester Bond
Formed
pdb|1N38|A Chain A, Reovirus Polymerase Lambda3 Elongation Complex With One
Phosphodiester Bond Formed
pdb|1UON|A Chain A, Reovirus Polymerase Lambda-3 Localized By Electron
Cryomicroscopy Of Virions At 7.6-a Resolution
Length = 1267
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 39 GCLYQPLKEKPD-LPPLQYE-PLLCMRNQCRAILNPL 73
G LY P+ +K D +P L + PL C R CR I PL
Sbjct: 165 GSLYDPVLQKYDEIPDLSHNCPLWCFREICRHISGPL 201
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 230 GCLYQPLKEKPD-LPPLQYE-PLLCMRNQCRAILNPL 264
G LY P+ +K D +P L + PL C R CR I PL
Sbjct: 165 GSLYDPVLQKYDEIPDLSHNCPLWCFREICRHISGPL 201
>pdb|2CSE|1 Chain 1, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 1267
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 39 GCLYQPLKEKPD-LPPLQYE-PLLCMRNQCRAILNPL 73
G LY P+ +K D +P L + PL C R CR I PL
Sbjct: 165 GSLYDPVLQKYDEIPDLSHNCPLWCFREICRHISGPL 201
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 230 GCLYQPLKEKPD-LPPLQYE-PLLCMRNQCRAILNPL 264
G LY P+ +K D +P L + PL C R CR I PL
Sbjct: 165 GSLYDPVLQKYDEIPDLSHNCPLWCFREICRHISGPL 201
>pdb|1D8V|A Chain A, The Restrained And Minimized Average Nmr Structure Of
Map30
Length = 263
Score = 29.6 bits (65), Expect = 8.2, Method: Composition-based stats.
Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 9/160 (5%)
Query: 582 QFLQVFNNS-PDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDC 640
+F++ F + P Y L+ +S S I L SY + + V +D +++
Sbjct: 16 KFIEDFRATLPFSHKVYDIPLLYSTISDSRRFILLNLTSYAYE--TISVAIDVTNVYVVA 73
Query: 641 ILLMDTFFQLLIFHGEEPIRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCA 700
D + F E P ++N + KG K T +YE L A + ID+ A
Sbjct: 74 YRTRDVSY----FFKESPPEAYNILFKGTRKITLPYTGNYENLQTAAHKIRENIDLGLPA 129
Query: 701 LDQTGLLEMKLCCNATGKPSHVLIAIEFAQPSPMLKAQKR 740
L + + NA PS +L+ I+ + K +R
Sbjct: 130 L--SSAITTLFYYNAQSAPSALLVLIQTTAEAARFKYIER 167
>pdb|1CF5|A Chain A, Beta-Momorcharin Structure At 2.55 A
pdb|1CF5|B Chain B, Beta-Momorcharin Structure At 2.55 A
Length = 249
Score = 29.3 bits (64), Expect = 9.6, Method: Composition-based stats.
Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 9/160 (5%)
Query: 582 QFLQVFNNS-PDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDC 640
+F++ F + P Y L+ +S S I L SY + + V +D +++
Sbjct: 16 KFIEDFRATLPFSHKVYDIPLLYSTISDSRRFILLNLTSYAYE--TISVAIDVTNVYVVA 73
Query: 641 ILLMDTFFQLLIFHGEEPIRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCA 700
D + F E P ++N + KG K T +YE L A + ID+ A
Sbjct: 74 YRTRDVSY----FFKESPPEAYNILFKGTRKITLPYTGNYENLQTAAHKIRENIDLGLPA 129
Query: 701 LDQTGLLEMKLCCNATGKPSHVLIAIEFAQPSPMLKAQKR 740
L + + NA PS +L+ I+ + K +R
Sbjct: 130 L--SSAITTLFYYNAQSAPSALLVLIQTTAEAARFKYIER 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,567,524
Number of Sequences: 62578
Number of extensions: 1204818
Number of successful extensions: 2432
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2360
Number of HSP's gapped (non-prelim): 71
length of query: 950
length of database: 14,973,337
effective HSP length: 108
effective length of query: 842
effective length of database: 8,214,913
effective search space: 6916956746
effective search space used: 6916956746
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)