Query psy13068
Match_columns 950
No_of_seqs 268 out of 822
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 18:37:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13068.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13068hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00162 transport protein sec 100.0 3E-113 6E-118 1039.5 51.0 580 199-949 3-668 (761)
2 KOG1986|consensus 100.0 1E-109 2E-114 948.7 40.2 569 198-949 2-651 (745)
3 COG5047 SEC23 Vesicle coat com 100.0 1.2E-98 3E-103 838.0 27.8 574 201-949 5-662 (755)
4 KOG1984|consensus 100.0 1.1E-95 2E-100 844.3 36.1 552 188-947 268-912 (1007)
5 KOG1985|consensus 100.0 1.4E-94 3E-99 835.1 41.2 535 203-947 168-794 (887)
6 COG5028 Vesicle coat complex C 100.0 4E-85 8.7E-90 751.0 38.1 527 202-946 147-766 (861)
7 KOG1986|consensus 100.0 3E-89 6.5E-94 781.0 2.1 552 6-687 1-671 (745)
8 PTZ00395 Sec24-related protein 100.0 3.1E-82 6.6E-87 759.3 39.3 547 202-946 649-1464(1560)
9 COG5047 SEC23 Vesicle coat com 100.0 8.4E-71 1.8E-75 615.0 1.9 547 11-684 6-679 (755)
10 PLN00162 transport protein sec 100.0 9.9E-61 2.1E-65 580.6 5.3 539 9-663 4-668 (761)
11 cd01478 Sec23-like Sec23-like: 100.0 1.3E-37 2.8E-42 337.5 17.3 243 327-730 4-258 (267)
12 cd01479 Sec24-like Sec24-like: 100.0 6.6E-30 1.4E-34 274.4 12.0 139 552-729 83-222 (244)
13 cd01468 trunk_domain trunk dom 100.0 2.3E-29 5.1E-34 269.2 13.5 142 552-730 82-226 (239)
14 PF04811 Sec23_trunk: Sec23/Se 100.0 2.5E-28 5.4E-33 261.6 11.8 143 552-730 82-228 (243)
15 PF04815 Sec23_helical: Sec23/ 99.8 2.3E-20 5E-25 175.3 10.9 101 800-900 1-103 (103)
16 KOG1984|consensus 99.4 2.3E-13 5E-18 161.1 4.0 94 7-108 280-380 (1007)
17 KOG1985|consensus 99.3 5.3E-13 1.1E-17 157.8 1.4 85 11-100 167-255 (887)
18 PF04810 zf-Sec23_Sec24: Sec23 99.3 1.2E-12 2.5E-17 102.7 2.2 40 248-289 1-40 (40)
19 COG5028 Vesicle coat complex C 99.2 2.4E-12 5.2E-17 151.3 1.4 88 8-100 144-236 (861)
20 PF04810 zf-Sec23_Sec24: Sec23 99.1 2.6E-11 5.7E-16 95.1 1.1 39 57-100 1-39 (40)
21 PF08033 Sec23_BS: Sec23/Sec24 98.9 1.3E-09 2.8E-14 101.3 5.3 52 731-782 10-93 (96)
22 PTZ00395 Sec24-related protein 97.8 7.1E-06 1.5E-10 102.9 1.9 87 8-100 646-746 (1560)
23 PF00626 Gelsolin: Gelsolin re 97.1 0.00034 7.3E-09 61.5 2.7 33 913-945 5-37 (76)
24 cd01478 Sec23-like Sec23-like: 95.6 0.00081 1.8E-08 74.1 -4.8 143 138-290 106-266 (267)
25 smart00262 GEL Gelsolin homolo 94.7 0.03 6.5E-07 51.1 3.5 32 915-946 15-46 (90)
26 PRK13685 hypothetical protein; 91.3 1.9 4E-05 49.0 12.1 42 682-725 219-273 (326)
27 PF04815 Sec23_helical: Sec23/ 89.8 0.14 3E-06 48.4 1.1 85 489-573 6-92 (103)
28 KOG0443|consensus 87.1 0.66 1.4E-05 57.3 4.6 49 898-946 616-668 (827)
29 KOG0444|consensus 86.8 0.55 1.2E-05 56.7 3.6 43 902-944 622-667 (1255)
30 KOG0443|consensus 66.2 4.1 9E-05 50.6 2.7 45 902-946 255-306 (827)
31 KOG0444|consensus 46.9 16 0.00034 44.9 3.1 48 898-945 730-786 (1255)
32 cd01463 vWA_VGCC_like VWA Volt 46.3 20 0.00043 37.1 3.5 37 332-368 14-59 (190)
33 cd01477 vWA_F09G8-8_type VWA F 39.3 32 0.0007 36.2 3.8 37 681-718 151-187 (193)
34 cd01451 vWA_Magnesium_chelatas 35.7 60 0.0013 33.2 5.1 47 681-729 122-168 (178)
35 cd01466 vWA_C3HC4_type VWA C3H 34.9 1.5E+02 0.0032 29.6 7.7 33 689-724 121-153 (155)
36 PF13768 VWA_3: von Willebrand 34.4 35 0.00075 33.8 3.0 35 333-367 2-44 (155)
37 cd01475 vWA_Matrilin VWA_Matri 30.8 57 0.0012 34.8 4.1 47 681-730 125-171 (224)
38 COG4245 TerY Uncharacterized p 30.6 28 0.00061 36.9 1.6 35 326-366 4-53 (207)
39 PF00641 zf-RanBP: Zn-finger i 27.9 29 0.00064 25.4 0.9 17 83-99 2-18 (30)
40 PF10058 DUF2296: Predicted in 25.7 44 0.00094 28.4 1.7 34 248-283 21-54 (54)
41 cd01453 vWA_transcription_fact 25.0 95 0.0021 32.3 4.4 39 681-724 126-164 (183)
42 cd01472 vWA_collagen von Wille 24.4 98 0.0021 30.9 4.3 31 686-718 125-155 (164)
43 PF14692 DUF4462: Domain of un 23.5 32 0.0007 25.4 0.4 13 17-29 4-16 (28)
44 PF04056 Ssl1: Ssl1-like; Int 23.5 1.8E+02 0.0038 31.1 6.0 34 682-718 121-154 (193)
45 KOG2884|consensus 23.4 1.4E+02 0.003 32.6 5.1 38 681-718 126-163 (259)
46 cd01469 vWA_integrins_alpha_su 23.1 1E+02 0.0022 31.5 4.2 46 683-729 124-172 (177)
47 cd01480 vWA_collagen_alpha_1-V 22.6 53 0.0011 33.9 2.0 43 331-373 2-62 (186)
48 PRK00398 rpoP DNA-directed RNA 21.6 71 0.0015 25.7 2.1 30 249-284 3-32 (46)
49 cd01482 vWA_collagen_alphaI-XI 20.8 1.2E+02 0.0026 30.4 4.1 36 681-718 120-155 (164)
50 cd01466 vWA_C3HC4_type VWA C3H 20.3 68 0.0015 32.1 2.2 34 334-367 3-45 (155)
No 1
>PLN00162 transport protein sec23; Provisional
Probab=100.00 E-value=2.6e-113 Score=1039.52 Aligned_cols=580 Identities=42% Similarity=0.725 Sum_probs=506.0
Q ss_pred HhhccCCCeeeeeccccCCCHHHHhhcccceEEEeccCCCCCCCCCCCCcccccccccccceeeccceEeCCCCeeEecC
Q psy13068 199 FYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNF 278 (950)
Q Consensus 199 ~~~~e~~~~iR~t~~~~P~t~~~a~k~~~Plg~~~~Pl~~~~~~p~~~~~p~rC~~~~C~aylNP~~~~d~~g~~w~C~~ 278 (950)
+.+.|+.+|||+|||+||+++.+++++++|+||+|+||++.+++|.++++|+||++ |+|||||||++|++|++|+||+
T Consensus 3 ~~~~e~~~gvR~s~n~~P~t~~~~~~~~iPlg~v~tPl~~~~~vp~v~~~pvRC~~--CraylNPf~~~d~~~~~W~C~~ 80 (761)
T PLN00162 3 FAELEAIDGVRMSWNVWPSSKIEASKCVIPLAALYTPLKPLPELPVLPYDPLRCRT--CRAVLNPYCRVDFQAKIWICPF 80 (761)
T ss_pred hhhhcccCceEeeeecCCCCHHHHhcCCCCeEEEEecCCcCCCCCcCCCCCCccCC--CcCEECCceEEecCCCEEEccC
Confidence 34788999999999999999999999999999999999998889999999999999 9999999999999999999999
Q ss_pred CCCCCCCchhhhhccccCCCCcccCCCceEEEEcc---CCCCCCCCCCCCcceeecccceEEEEcchhh-----hhh--h
Q psy13068 279 CFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIP---VSQCFPKYPLRSLPVFLPFLIQFVFFLAITH-----LIN--Q 348 (950)
Q Consensus 279 C~~~N~~p~~y~~i~d~~~~~El~~~~~tvEy~~p---~~~~~p~~p~~~~pv~l~~~~~fviD~s~~~-----lk~--~ 348 (950)
|+.+|.||++|..+++.+.|+||.|+++||||++| ...+.| |+|+ ||||+|..+ +|+ +
T Consensus 81 C~~~N~~P~~Y~~~~~~~~p~EL~p~~~TvEY~~p~~~~~~~~p-------p~fv-----FvID~s~~~~~l~~lk~sl~ 148 (761)
T PLN00162 81 CFQRNHFPPHYSSISETNLPAELFPQYTTVEYTLPPGSGGAPSP-------PVFV-----FVVDTCMIEEELGALKSALL 148 (761)
T ss_pred CCCCCCCchHhcccCccCCChhhcCCceeEEEECCCCCCCCCCC-------cEEE-----EEEecchhHHHHHHHHHHHH
Confidence 99999999999988889999999999999999999 444444 9999 999999944 555 7
Q ss_pred cCCCCCCCCCeeeeEeeccccceEEeecccccCcccceeeeccccCCCCchhhhhhhhccCCcCCCCCcceEEEeeeccc
Q psy13068 349 VGSPNLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPLLY 428 (950)
Q Consensus 349 ~~l~~Lp~~~~vglit~~~~~s~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 428 (950)
.+|+.||++++||||||| +.||+|++....|+++
T Consensus 149 ~~L~~LP~~a~VGlITF~---s~V~~~~L~~~~~~~~------------------------------------------- 182 (761)
T PLN00162 149 QAIALLPENALVGLITFG---THVHVHELGFSECSKS------------------------------------------- 182 (761)
T ss_pred HHHHhCCCCCEEEEEEEC---CEEEEEEcCCCCCcce-------------------------------------------
Confidence 889999999999999999 9999999986555444
Q ss_pred eeeeecccccceecccccccccccCCcccccccccCCCchHHHHHhhhccCCCCCchhhHHHhhhhcccccccCCchhhh
Q psy13068 429 SITYITENDNVIRRNEIHIKPRICGLQEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIE 508 (950)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~pq~~~~~~~~~~~~~~d~~~~~~~~~ 508 (950)
+||.|.|+++.+|+.++.+ +..+. .
T Consensus 183 -----------------------------~Vf~g~k~~t~~~l~~~l~---l~~~~-----------------~------ 207 (761)
T PLN00162 183 -----------------------------YVFRGNKEVSKDQILEQLG---LGGKK-----------------R------ 207 (761)
T ss_pred -----------------------------EEecCCccCCHHHHHHHhc---ccccc-----------------c------
Confidence 4455666666666655421 10000 0
Q ss_pred HHHhhhhHHHHHhhcCCCCCCCCCCCCCccccccccccccccccccccccCCCCcchHHHHHHHhhCCCCCccceeeecc
Q psy13068 509 DERETKMEEECQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRTLLIHLPHYSRFQFLQVFN 588 (950)
Q Consensus 509 ~~~~~~~~~~~~~~g~~~~~~p~s~~lp~~~~~~~~~~~~l~rs~fL~~l~e~~~~~~~i~~lL~~L~~~~~~~~lqvf~ 588 (950)
+.++.-..+.++.+.+|. .++||+|++||++. |+++||+|++ ++|++
T Consensus 208 -----------~~~~~~~~~~~~~~~~p~-------------~~~fLvpl~e~~~~---i~~lLe~L~~-~~~~~----- 254 (761)
T PLN00162 208 -----------RPAGGGIAGARDGLSSSG-------------VNRFLLPASECEFT---LNSALEELQK-DPWPV----- 254 (761)
T ss_pred -----------cccccccccccccccCCC-------------ccceeEEHHHHHHH---HHHHHHhhhc-ccccc-----
Confidence 000000000000011111 26899999999987 9999999999 89998
Q ss_pred CCCCCccccccccchHHHHHHHHhhccc----ccc-cccCCCCceEeccccccCCceeecccchhhhhhccCCCcccccc
Q psy13068 589 NSPDETSYYRHVLMREDLSQSLIMIQPV----LYS-YGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEEPIRSHN 663 (950)
Q Consensus 589 ~s~~~~~~~r~~G~~~Al~~A~~ll~p~----~~~-~~f~gGp~~v~l~s~s~GPG~i~~~d~~~~~~~~~~~~~irs~~ 663 (950)
++++++.||+| +||++|..+|+.. +.+ ++|+|||+ |.|||+|+-++ .++++|+|+
T Consensus 255 --~~~~rp~r~tG--~AL~vA~~lL~~~~~~~gGrI~~F~sgpp-------T~GpG~v~~r~---------~~~~~rsh~ 314 (761)
T PLN00162 255 --PPGHRPARCTG--AALSVAAGLLGACVPGTGARIMAFVGGPC-------TEGPGAIVSKD---------LSEPIRSHK 314 (761)
T ss_pred --CCCCCCCccHH--HHHHHHHHHHhhccCCCceEEEEEeCCCC-------CCCCceeeccc---------ccccccCcc
Confidence 77889999999 9999999999832 223 57788888 99999999554 477899999
Q ss_pred ccccccchhhhhhHHHHHHHHHHHhhcccEEEEEeccCCCCCchhhhhhhhccCCCcEEEEcCCCCC-------------
Q psy13068 664 DIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNATGKPSHVLIAIEFAQ------------- 730 (950)
Q Consensus 664 d~~k~~~~~~~pa~~FYk~LA~~~~~~gIsVDLF~~s~~~vdlatl~~L~~~TGG~~~v~~y~~F~~------------- 730 (950)
|++|+++++++++.+||++||++|+++||+||||+++.+|+||+||+.|++.||| .+++|++|+.
T Consensus 315 di~k~~~~~~~~a~~fY~~la~~~~~~gisvDlF~~s~dqvglaem~~l~~~TGG--~v~~~~sF~~~~f~~~l~r~~~r 392 (761)
T PLN00162 315 DLDKDAAPYYKKAVKFYEGLAKQLVAQGHVLDVFACSLDQVGVAEMKVAVERTGG--LVVLAESFGHSVFKDSLRRVFER 392 (761)
T ss_pred ccccchhhhcchHHHHHHHHHHHHHHcCceEEEEEccccccCHHHHhhhHhhcCc--EEEEeCCcChHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999 9999999976
Q ss_pred -----------------CCCCeeEeeecCC--------------------Cc----------------CCCCCCC-----
Q psy13068 731 -----------------PSPMLKAQKRLGS--------------------TT----------------AAHGAPI----- 752 (950)
Q Consensus 731 -----------------~S~GlkV~~~~Gs--------------------Tt----------------~~~de~L----- 752 (950)
||+||||+++||+ |+ ++++++.
T Consensus 393 ~~~~~~~~gf~a~~~VrtS~glkv~g~~G~~~s~~~~~~~vsd~~iG~g~T~~w~l~~l~~~~t~av~f~~~~~~~~~~~ 472 (761)
T PLN00162 393 DGEGSLGLSFNGTFEVNCSKDVKVQGAIGPCASLEKKGPSVSDTEIGEGGTTAWKLCGLDKKTSLAVFFEVANSGQSNPQ 472 (761)
T ss_pred cccccccccceeEEEEEecCCeEEeeeEcCcccccccCCccccccccCCCCceeeecCcCcCCEEEEEEEEccccccCCC
Confidence 9999999999992 10 3444333
Q ss_pred CCCCceEEEEEEeeecCCCcEEEEEEeeeecccccCCCHHHHHhccCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q psy13068 753 PQGGRGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLI 832 (950)
Q Consensus 753 ~~~~~~yIQ~AlLYT~~~GeRRIRV~Tl~l~~~pvts~l~~v~~s~D~eAi~~llaR~av~~~~~~~l~d~r~~L~~~lv 832 (950)
.++..+|||||++||+++|+|||||||++++|++ ++++.+++++|||||++++|||+|+.+++++++.|+++||+++|+
T Consensus 473 ~~~~~~~iQ~a~lYt~~~G~rRiRV~T~~~~~~~-~~~~~~v~~~fDqeA~a~llaR~av~k~~~~~~~d~~r~ld~~li 551 (761)
T PLN00162 473 PPGQQFFLQFLTRYQHSNGQTRLRVTTVTRRWVE-GSSSEELVAGFDQEAAAVVMARLASHKMETEEEFDATRWLDRALI 551 (761)
T ss_pred CCCceEEEEEEEEEEcCCCCEEEEEEccccCccC-CCCHHHHHHhcCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 4556799999999999999999999999996543 337889999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCCCccccCcccccHHHHHHHHHhcccccCCCCChhHHHHHHHHHcCCCHHhHHhccccceEEeccCCC
Q psy13068 833 RLCQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGP 912 (950)
Q Consensus 833 ~il~~Yr~~~~~~~~qliLPesLklLP~yi~~LlKS~~Lr~~n~spDeR~~~~~~l~s~~v~~~l~~iYP~L~slh~~g~ 912 (950)
+++++|+.|.++.+++|+||++||+||+|||||+||++|+++|+|||||+|+|++++++++.+++.||||+|++||++++
T Consensus 552 ~~~~~f~~Yrk~~~~s~~Lp~~~~~lP~f~~~LrRS~~l~~~n~spDera~~r~~l~~~~~~~sl~mI~P~L~sy~~~~~ 631 (761)
T PLN00162 552 RLCSKFGDYRKDDPSSFRLSPNFSLYPQFMFNLRRSQFVQVFNNSPDETAYFRMMLNRENVTNSLVMIQPTLISYSFNGP 631 (761)
T ss_pred HHHHHHhhhcccCCccccCCHHHHHHHHHHHHHhhhhhccCCCCCchHHHHHHHHHhcCCHHHHHHhhCCeEEEecCCCC
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CcccccccccccCCeEEEEECCCEEEEEEcCCCCCCC
Q psy13068 913 PVPVLLDTSSIKPDCILLMDTFFQLLIFHGEVSNARR 949 (950)
Q Consensus 913 P~~v~LS~esL~~dgIyLLD~g~~I~IwvG~~V~~w~ 949 (950)
|++++||.++|++|||||||+|++|+||+|++|++||
T Consensus 632 P~pv~Ld~~si~~d~ilLLD~~f~vvi~~G~~ia~w~ 668 (761)
T PLN00162 632 PEPVLLDVASIAADRILLLDSYFSVVIFHGSTIAQWR 668 (761)
T ss_pred CcceecchhhccCCceEEEeCCCEEEEEecCcccchh
Confidence 9999999999999999999999999999999999998
No 2
>KOG1986|consensus
Probab=100.00 E-value=1.1e-109 Score=948.66 Aligned_cols=569 Identities=47% Similarity=0.793 Sum_probs=518.3
Q ss_pred HHhhccCCCeeeeeccccCCCHHHHhhcccceEEEeccCCCCCCCCCCCCcccccccccccceeeccceEeCCCCeeEec
Q psy13068 198 FFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCN 277 (950)
Q Consensus 198 ~~~~~e~~~~iR~t~~~~P~t~~~a~k~~~Plg~~~~Pl~~~~~~p~~~~~p~rC~~~~C~aylNP~~~~d~~g~~w~C~ 277 (950)
++++.|+.||+|+|||+||+++.++.++++|++|+|+||++++++|.++|+|++|++ |+||+||||.+|++++.|.|+
T Consensus 2 ~~~~~e~~dGvR~twnvwPs~~~~~~~~vvPla~lytPl~e~~~~~~~~y~P~~C~~--C~AvlNPyc~vd~~a~~W~Cp 79 (745)
T KOG1986|consen 2 FIEDIEEIDGVRFTWNVWPSTRAEASRTVVPLACLYTPLKERPDLPPIQYDPLRCSK--CGAVLNPYCSVDFRAKSWICP 79 (745)
T ss_pred cccccccCCCcccccccCCCcccccccccccHHHhccccccCCCCCccCCCCchhcc--chhhcCcceeecccCceEecc
Confidence 345789999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred CCCCCCCCchhhhhccccCCCCcccCCCceEEEEccCCCCCCCCCCCCcceeecccceEEEEcch-----hhhhh--hcC
Q psy13068 278 FCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPVSQCFPKYPLRSLPVFLPFLIQFVFFLAI-----THLIN--QVG 350 (950)
Q Consensus 278 ~C~~~N~~p~~y~~i~d~~~~~El~~~~~tvEy~~p~~~~~p~~p~~~~pv~l~~~~~fviD~s~-----~~lk~--~~~ 350 (950)
||+++|.||++|..+++.+.|+||.|+++||||+++++...| |+|+ ||||+|+ +++|+ +++
T Consensus 80 fC~qrN~~p~~Y~~is~~n~P~el~Pq~stvEy~l~~~~~~p-------pvf~-----fVvDtc~~eeeL~~LkssL~~~ 147 (745)
T KOG1986|consen 80 FCNQRNPFPPHYSGISENNLPPELLPQYSTVEYTLSPGRVSP-------PVFV-----FVVDTCMDEEELQALKSSLKQS 147 (745)
T ss_pred ccccCCCCChhhcccCccCCChhhcCCcceeEEecCCCCCCC-------ceEE-----EEEeeccChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998665445 9999 9999999 66777 889
Q ss_pred CCCCCCCCeeeeEeeccccceEEeecccccCcccceeeeccccCCCCchhhhhhhhccCCcCCCCCcceEEEeeecccee
Q psy13068 351 SPNLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPLLYSI 430 (950)
Q Consensus 351 l~~Lp~~~~vglit~~~~~s~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 430 (950)
++.||++++||||||+ +.||+|+++...
T Consensus 148 l~lLP~~alvGlItfg---~~v~v~el~~~~------------------------------------------------- 175 (745)
T KOG1986|consen 148 LSLLPENALVGLITFG---TMVQVHELGFEE------------------------------------------------- 175 (745)
T ss_pred HhhCCCcceEEEEEec---ceEEEEEcCCCc-------------------------------------------------
Confidence 9999999999999999 899999987533
Q ss_pred eeecccccceecccccccccccCCcccccccccCCCchHHHHHhhhccCCCCCchhhHHHhhhhcccccccCCchhhhHH
Q psy13068 431 TYITENDNVIRRNEIHIKPRICGLQEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDE 510 (950)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~pq~~~~~~~~~~~~~~d~~~~~~~~~~~ 510 (950)
++++|||+|.|+++.+++.+. +|.+. +
T Consensus 176 -----------------------~sk~~VF~G~ke~s~~q~~~~---L~~~~-~-------------------------- 202 (745)
T KOG1986|consen 176 -----------------------CSKSYVFSGNKEYSAKQLLDL---LGLSG-G-------------------------- 202 (745)
T ss_pred -----------------------ccceeEEeccccccHHHHHHH---hcCCc-c--------------------------
Confidence 455778889999999888765 22211 0
Q ss_pred HhhhhHHHHHhhcCCCCCCCCCCCCCccccccccccccccccccccccCCCCcchHHHHHHHhhCCCCCccceeeeccCC
Q psy13068 511 RETKMEEECQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRTLLIHLPHYSRFQFLQVFNNS 590 (950)
Q Consensus 511 ~~~~~~~~~~~~g~~~~~~p~s~~lp~~~~~~~~~~~~l~rs~fL~~l~e~~~~~~~i~~lL~~L~~~~~~~~lqvf~~s 590 (950)
-.+..+ +. ...++||.|..+|+.. +.++|++|++ |+|++
T Consensus 203 --------------~~~~~~--~~--------------~~~~rFL~P~~~c~~~---L~~lle~L~~-d~wpV------- 241 (745)
T KOG1986|consen 203 --------------AGKGSE--NQ--------------SASNRFLLPAQECEFK---LTNLLEELQP-DPWPV------- 241 (745)
T ss_pred --------------cccCCc--cc--------------ccchhhhccHHHHHHH---HHHHHHHhcC-CCCCC-------
Confidence 000000 01 1237999999999988 9999999999 99999
Q ss_pred CCCccccccccchHHHHHHHHhhcccccc------cccCCCCceEeccccccCCceeecccchhhhhhccCCCccccccc
Q psy13068 591 PDETSYYRHVLMREDLSQSLIMIQPVLYS------YGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEEPIRSHND 664 (950)
Q Consensus 591 ~~~~~~~r~~G~~~Al~~A~~ll~p~~~~------~~f~gGp~~v~l~s~s~GPG~i~~~d~~~~~~~~~~~~~irs~~d 664 (950)
+..+|+.||+| .||++|+.+|+ ..++ ..|+|||+ |.|||.|. .++ .++|+|+|+|
T Consensus 242 ~~g~Rp~RcTG--~Al~iA~~Ll~-~c~p~~g~rIv~f~gGPc-------T~GpG~vv-~~e--------l~~piRshhd 302 (745)
T KOG1986|consen 242 PPGHRPLRCTG--VALSIASGLLE-GCFPNTGARIVLFAGGPC-------TRGPGTVV-SRE--------LKEPIRSHHD 302 (745)
T ss_pred CCCCCcccchh--HHHHHHHHHhc-ccCCCCcceEEEeccCCC-------CcCCceec-chh--------hcCCCcCccc
Confidence 99999999999 99999999999 4443 59999999 99999999 777 7899999999
Q ss_pred cccccchhhhhhHHHHHHHHHHHhhcccEEEEEeccCCCCCchhhhhhhhccCCCcEEEEcCCCCC--------------
Q psy13068 665 IHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNATGKPSHVLIAIEFAQ-------------- 730 (950)
Q Consensus 665 ~~k~~~~~~~pa~~FYk~LA~~~~~~gIsVDLF~~s~~~vdlatl~~L~~~TGG~~~v~~y~~F~~-------------- 730 (950)
++++.++|++++.|||++||++++++|++||+|+++.||+|+++|++|++.||| .+.+.++|++
T Consensus 303 i~~d~a~y~kKa~KfY~~La~r~~~~ghvlDifa~~lDQvGi~EMk~l~~~TGG--~lvl~dsF~~s~Fk~sfqR~f~~d 380 (745)
T KOG1986|consen 303 IEKDNAPYYKKAIKFYEKLAERLANQGHVLDIFAAALDQVGILEMKPLVESTGG--VLVLGDSFNTSIFKQSFQRIFTRD 380 (745)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHhCCceEeeeeeeccccchHHHHHHhhcCCc--EEEEecccchHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999999999 9999999996
Q ss_pred ----------------CCCCeeEeeecCC--------------------C------------c------CCCCCCCCCCC
Q psy13068 731 ----------------PSPMLKAQKRLGS--------------------T------------T------AAHGAPIPQGG 756 (950)
Q Consensus 731 ----------------~S~GlkV~~~~Gs--------------------T------------t------~~~de~L~~~~ 756 (950)
||+++||++.+|. | + ++.+...+.+.
T Consensus 381 ~~~~l~~~fn~~leV~tSkdlkI~g~IGp~~Sl~~k~~~vsdt~ig~g~t~~wkm~~ls~~t~~s~~fei~~~~~~~~~~ 460 (745)
T KOG1986|consen 381 GEGDLKMGFNGTLEVKTSKDLKIQGVIGPCVSLNKKGPNVSDTEIGEGNTSAWKMCGLSPSTTLSLFFEISNQHNIPQSG 460 (745)
T ss_pred cccchhhhcCceEEEEecCCcEEEecccccccccCCCCccccceeccccccceeeeccCCCceEEEEEEeccccCCCCCC
Confidence 9999999999981 1 1 11222344466
Q ss_pred ceEEEEEEeeecCCCcEEEEEEeeeecccccCCCHHHHHhccCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Q psy13068 757 RGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLIRLCQ 836 (950)
Q Consensus 757 ~~yIQ~AlLYT~~~GeRRIRV~Tl~l~~~pvts~l~~v~~s~D~eAi~~llaR~av~~~~~~~l~d~r~~L~~~lv~il~ 836 (950)
.+||||++.|++++|++|+||+|++++|++..+ .++..+|||||++++|||+++.++.++...|+++|+|+.++++++
T Consensus 461 ~~~iQFiT~Yq~s~g~~riRVtT~~r~~~d~~~--~~i~~~FDqEaaAV~mAR~~~~kae~e~~~d~~rwlDr~Lirlc~ 538 (745)
T KOG1986|consen 461 QGYIQFITQYQHSSGQKRIRVTTLARPWADSGS--PEISQSFDQEAAAVLMARLALLKAETEDGPDVLRWLDRNLIRLCQ 538 (745)
T ss_pred eeEEEEEEEEEcCCCcEEEEEEEeehhhccccc--hHhhhccchHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHH
Confidence 899999999999999999999999999886543 789999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCCccccCcccccHHHHHHHHHhcccccCCCCChhHHHHHHHHHcCCCHHhHHhccccceEEeccCCCCccc
Q psy13068 837 KFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPV 916 (950)
Q Consensus 837 ~Yr~~~~~~~~qliLPesLklLP~yi~~LlKS~~Lr~~n~spDeR~~~~~~l~s~~v~~~l~~iYP~L~slh~~g~P~~v 916 (950)
+|+.|.+++|+++.|+++|.++|+|||+|+||++|+++|.|||||+|+||+|+++++++++.||+|+|++|+++|+|+++
T Consensus 539 kFg~y~k~dPssf~l~~~fsl~PQfmfhLRRS~fLqvfNnSPDEt~~yrhll~~e~v~~sliMIqP~L~sySf~g~~epv 618 (745)
T KOG1986|consen 539 KFGDYRKDDPSSFRLSPNFSLYPQFMFHLRRSPFLQVFNNSPDETAYYRHLLNREDVDNSLIMIQPTLLSYSFNGPPEPV 618 (745)
T ss_pred HHhccCCCCchhhcCChhhhhhHHHHHhhccchhhhccCCCcchHHHHHHHHhhccchhhhheecceeeeeecCCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCeEEEEECCCEEEEEEcCCCCCCC
Q psy13068 917 LLDTSSIKPDCILLMDTFFQLLIFHGEVSNARR 949 (950)
Q Consensus 917 ~LS~esL~~dgIyLLD~g~~I~IwvG~~V~~w~ 949 (950)
.|+..+|.+|.|+|||++++|+||+|++|++||
T Consensus 619 lLD~~Si~~D~iLLlDt~f~i~i~hG~tIaqWR 651 (745)
T KOG1986|consen 619 LLDVASILADRILLLDTYFTIVIFHGSTIAQWR 651 (745)
T ss_pred EecccccCCceEEEeecceEEEEECCchHHHHH
Confidence 999999999999999999999999999999998
No 3
>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.2e-98 Score=838.01 Aligned_cols=574 Identities=42% Similarity=0.685 Sum_probs=510.9
Q ss_pred hccCCCeeeeeccccCCCHHHHhhcccceEEEeccCCCCCCCCCCCCcccccccccccceeeccceEeCCCCeeEecCCC
Q psy13068 201 QNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCF 280 (950)
Q Consensus 201 ~~e~~~~iR~t~~~~P~t~~~a~k~~~Plg~~~~Pl~~~~~~p~~~~~p~rC~~~~C~aylNP~~~~d~~g~~w~C~~C~ 280 (950)
..|+.||||+|||+||+++.++++.++|++|+|+||++.+++++..|+|+.|..+ |+||+||||.+|.+++.|.|+||+
T Consensus 5 ~iee~dgir~twnvfpat~~da~~~~iPia~lY~Pl~e~~~~~v~~yepv~C~~p-C~avlnpyC~id~r~~~W~CpfCn 83 (755)
T COG5047 5 IIEENDGIRLTWNVFPATRGDATRTVIPIACLYTPLHEDDALTVNYYEPVKCTAP-CKAVLNPYCHIDERNQSWICPFCN 83 (755)
T ss_pred hhccccceEEEEecccCCccccccccccHHHhccccccccccCcccCCCceeccc-chhhcCcceeeccCCceEecceec
Confidence 4889999999999999999999999999999999999998999999999999986 999999999999999999999999
Q ss_pred CCCCCchhhhhccccCCCCcccCCCceEEEEccCCCCCCCCCCCCcceeecccceEEEEcch-----hhhhh--hcCCCC
Q psy13068 281 QRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPVSQCFPKYPLRSLPVFLPFLIQFVFFLAI-----THLIN--QVGSPN 353 (950)
Q Consensus 281 ~~N~~p~~y~~i~d~~~~~El~~~~~tvEy~~p~~~~~p~~p~~~~pv~l~~~~~fviD~s~-----~~lk~--~~~l~~ 353 (950)
++|.+|++|..++..+.|+||.|+++|+||+++++.-.| |||+ ||||+++ +++|+ .++++.
T Consensus 84 qrn~lp~qy~~iS~~~LplellpqssTiey~lskp~~~p-------pvf~-----fvvD~~~D~e~l~~Lkdslivslsl 151 (755)
T COG5047 84 QRNTLPPQYRDISNANLPLELLPQSSTIEYTLSKPVILP-------PVFF-----FVVDACCDEEELTALKDSLIVSLSL 151 (755)
T ss_pred CCCCCChhhcCCCcccCCccccCCCceEEEEccCCccCC-------ceEE-----EEEEeecCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999886566 9999 9999999 77888 789999
Q ss_pred CCCCCeeeeEeeccccceEEeecccccCcccceeeeccccCCCCchhhhhhhhccCCcCCCCCcceEEEeeeccceeeee
Q psy13068 354 LPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPLLYSITYI 433 (950)
Q Consensus 354 Lp~~~~vglit~~~~~s~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 433 (950)
||++++||||||+ +.+|.|+++...
T Consensus 152 lppeaLvglItyg---t~i~v~el~ae~---------------------------------------------------- 176 (755)
T COG5047 152 LPPEALVGLITYG---TSIQVHELNAEN---------------------------------------------------- 176 (755)
T ss_pred CCccceeeEEEec---ceeEEEeccccc----------------------------------------------------
Confidence 9999999999999 889988887432
Q ss_pred cccccceecccccccccccCCcccccccccCCCchHHHHHhhhccCCCCCchhhHHHhhhhcccccccCCchhhhHHHhh
Q psy13068 434 TENDNVIRRNEIHIKPRICGLQEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERET 513 (950)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~pq~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 513 (950)
..+.|||.|.|++|.+.+.++- +...|-. .
T Consensus 177 --------------------~~r~~VF~g~~eyt~~~L~~ll---~~~~~~~----------~----------------- 206 (755)
T COG5047 177 --------------------HRRSYVFSGNKEYTKENLQELL---ALSKPTK----------S----------------- 206 (755)
T ss_pred --------------------cCcceeecchHHHHHHHHHHHh---cccCCCC----------c-----------------
Confidence 2346778888888877776552 1221110 0
Q ss_pred hhHHHHHhhcCCCCCCCCCCCCCccccccccccccccccccccccCCCCcchHHHHHHHhhCCCCCccceeeeccCCCCC
Q psy13068 514 KMEEECQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRTLLIHLPHYSRFQFLQVFNNSPDE 593 (950)
Q Consensus 514 ~~~~~~~~~g~~~~~~p~s~~lp~~~~~~~~~~~~l~rs~fL~~l~e~~~~~~~i~~lL~~L~~~~~~~~lqvf~~s~~~ 593 (950)
..+-+|..+.. + +..++|+.|..+|+.. +.++||+|++ |+|++ +..
T Consensus 207 --~~~es~is~~~-------~--------------~~~~rFl~p~q~ce~~---L~n~le~L~p-d~~~v-------~~~ 252 (755)
T COG5047 207 --GGFESKISGIG-------Q--------------FASSRFLLPTQQCEFK---LLNILEQLQP-DPWPV-------PAG 252 (755)
T ss_pred --chhhhhccccc-------c--------------cchhhhhccHHHHHHH---HHHHHHHhCC-CCccC-------CCC
Confidence 00000110100 0 1237899999999988 9999999999 99999 999
Q ss_pred ccccccccchHHHHHHHHhhcccccc------cccCCCCceEeccccccCCceeecccchhhhhhccCCCcccccccccc
Q psy13068 594 TSYYRHVLMREDLSQSLIMIQPVLYS------YGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEEPIRSHNDIHK 667 (950)
Q Consensus 594 ~~~~r~~G~~~Al~~A~~ll~p~~~~------~~f~gGp~~v~l~s~s~GPG~i~~~d~~~~~~~~~~~~~irs~~d~~k 667 (950)
+++.||+| +||..|..||+ ..++ .+|.|||| |.|||.|. ..+ .+|++|+|++++.
T Consensus 253 ~Rp~RCTG--sAl~ias~Ll~-~~~p~~~~~i~lF~~GPc-------TvGpG~Vv-s~e--------lkEpmRshH~ie~ 313 (755)
T COG5047 253 KRPLRCTG--SALNIASSLLE-QCFPNAGCHIVLFAGGPC-------TVGPGTVV-STE--------LKEPMRSHHDIES 313 (755)
T ss_pred CCCccccc--hhHHHHHHHHH-hhccCcceeEEEEcCCCc-------cccCceee-ehh--------hcccccccccccc
Confidence 99999999 99999999999 4444 49999999 99999999 556 6889999999999
Q ss_pred ccchhhhhhHHHHHHHHHHHhhcccEEEEEeccCCCCCchhhhhhhhccCCCcEEEEcCCCCC-----------------
Q psy13068 668 GNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNATGKPSHVLIAIEFAQ----------------- 730 (950)
Q Consensus 668 ~~~~~~~pa~~FYk~LA~~~~~~gIsVDLF~~s~~~vdlatl~~L~~~TGG~~~v~~y~~F~~----------------- 730 (950)
+.+++.+++.|||++||++.+.+|+++|+|+++.||+|+.+|++|...||| -+.+.++|+.
T Consensus 314 d~aqh~kka~KFY~~laeR~a~~gh~~DifagcldqIGI~eM~~L~~sTgg--~lvlsdsF~t~ifkqSfqrif~~d~~g 391 (755)
T COG5047 314 DSAQHSKKATKFYKGLAERVANQGHALDIFAGCLDQIGIMEMEPLTTSTGG--ALVLSDSFTTSIFKQSFQRIFNRDSEG 391 (755)
T ss_pred cchhhccchHHHHHHHHHHHhccchhHHHHHHHHHhhhhhcchhhccCCcc--eEEEeccccHHHHHHHHHHHhCcCccc
Confidence 999999999999999999999999999999999999999999999999999 9999999987
Q ss_pred -------------CCCCeeEeeecCC--------------------C-c---------------C--CCC--C-CCCCCC
Q psy13068 731 -------------PSPMLKAQKRLGS--------------------T-T---------------A--AHG--A-PIPQGG 756 (950)
Q Consensus 731 -------------~S~GlkV~~~~Gs--------------------T-t---------------~--~~d--e-~L~~~~ 756 (950)
|||+|++.+.+|+ | + | +.+ . .-+...
T Consensus 392 ~l~~gfNa~m~V~TsKnl~~~g~ig~a~~~~k~~~ni~~~eigi~~t~swkm~slsPk~nyal~fei~~~~~~~~~~~~~ 471 (755)
T COG5047 392 YLKMGFNANMEVKTSKNLKIKGLIGHAVSVKKKANNISDSEIGIGATNSWKMASLSPKSNYALYFEIALGAASGSAQRPA 471 (755)
T ss_pred chhhhhccceeEeeccCceeeeeecceeeecccccccccccccccccccccccccCCCcceEEEEEeccccCCCccCCcc
Confidence 9999999999982 1 0 0 111 1 112235
Q ss_pred ceEEEEEEeeecCCCcEEEEEEeeeecccccCCCHHHHHhccCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Q psy13068 757 RGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLIRLCQ 836 (950)
Q Consensus 757 ~~yIQ~AlLYT~~~GeRRIRV~Tl~l~~~pvts~l~~v~~s~D~eAi~~llaR~av~~~~~~~l~d~r~~L~~~lv~il~ 836 (950)
.+||||.+.|++++|..||||+|++..+.+ .....++++|||||+++++||+|+.|+..+...|+.+|+|+.++++++
T Consensus 472 ~a~iQfiT~yQhss~t~riRVtTvar~f~~--~~~p~i~~SFdqEaaaV~~aR~a~~K~~~ed~~Dv~rw~dr~lirlcq 549 (755)
T COG5047 472 EAYIQFITTYQHSSGTYRIRVTTVARMFTD--GGLPKINRSFDQEAAAVFMARIAAFKAETEDIIDVFRWIDRNLIRLCQ 549 (755)
T ss_pred cchhhhhhhhhccCCcEEEEEeehhhhhcc--CCChhhhhcchhhHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 799999999999999999999999986654 455789999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCCccccCcccccHHHHHHHHHhcccccCCCCChhHHHHHHHHHcCCCHHhHHhccccceEEeccCCCCccc
Q psy13068 837 KFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPV 916 (950)
Q Consensus 837 ~Yr~~~~~~~~qliLPesLklLP~yi~~LlKS~~Lr~~n~spDeR~~~~~~l~s~~v~~~l~~iYP~L~slh~~g~P~~v 916 (950)
+|..|.+++|+++.|++++.++|+|||+|+||++|+++|.|||||++++|++.+.++++++.||+|.|.+||+++.+.+|
T Consensus 550 ~fa~y~k~dpssfrl~~~f~lypqf~y~lrRSpfL~vfNnSPDEt~fyrh~l~~~dv~~sLimiqPtL~Sys~~~~~~pV 629 (755)
T COG5047 550 KFADYRKDDPSSFRLDPNFTLYPQFMYHLRRSPFLSVFNNSPDETAFYRHMLNNADVNDSLIMIQPTLQSYSFEKGGVPV 629 (755)
T ss_pred HHHhcCCCCchhhcCCcchhhhhHHHhhhhccceeeccCCCcchHHHHHHHHhcccccchhhhhcchheeeeccCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987789999
Q ss_pred ccccccccCCeEEEEECCCEEEEEEcCCCCCCC
Q psy13068 917 LLDTSSIKPDCILLMDTFFQLLIFHGEVSNARR 949 (950)
Q Consensus 917 ~LS~esL~~dgIyLLD~g~~I~IwvG~~V~~w~ 949 (950)
.||+-++++|.|+|||++++|+||+|+.|++||
T Consensus 630 lLDs~svkpdviLLlDtff~Ili~hG~~iaqwr 662 (755)
T COG5047 630 LLDSVSVKPDVILLLDTFFHILIFHGSYIAQWR 662 (755)
T ss_pred EEeccccCCCeEEEeeceeEEEEECChHHHHHH
Confidence 999999999999999999999999999999998
No 4
>KOG1984|consensus
Probab=100.00 E-value=1.1e-95 Score=844.32 Aligned_cols=552 Identities=18% Similarity=0.270 Sum_probs=478.7
Q ss_pred ccccchhhHHHHhhcc--CCCeeeeeccccCCCHHHHhhcccceEEEeccCCCCC----CCCCCC---Cccccccccccc
Q psy13068 188 LKISMTTYEEFFYQNE--ERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKP----DLPPLQ---YEPLLCMRNQCR 258 (950)
Q Consensus 188 ~~~~~~~~~~~~~~~e--~~~~iR~t~~~~P~t~~~a~k~~~Plg~~~~Pl~~~~----~~p~~~---~~p~rC~~~~C~ 258 (950)
-+=.+.|-..++++.+ ++++||+|++.+|.|.+.++..++|||++++||+... ++|+++ .+|+||.| |+
T Consensus 268 ~~PPl~TTd~~~~DqGN~sPr~mr~T~Y~iP~T~Dl~~as~iPLalvIqPfa~l~p~E~~~~vVd~g~sgPvRC~R--Ck 345 (1007)
T KOG1984|consen 268 QPPPLVTTDFFIQDQGNCSPRFMRCTMYTIPCTNDLLKASQIPLALVIQPFATLTPNEAPVPVVDLGESGPVRCNR--CK 345 (1007)
T ss_pred CCCCCcccceEEeccCCCCcchheeecccCCccHhHHHhcCCcceeEecccccCCcccCCCceecCCCCCCcchhh--hh
Confidence 3344555666777766 5899999999999999999999999999999999542 245544 47999999 99
Q ss_pred ceeeccceEeCCCCeeEecCCCCCCCCchhhhh-------ccccCCCCcccCCCceEEEEccCCCCC-CCCCCCCcceee
Q psy13068 259 AILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAA-------ITEQHQPAELHPQFTTIEYTIPVSQCF-PKYPLRSLPVFL 330 (950)
Q Consensus 259 aylNP~~~~d~~g~~w~C~~C~~~N~~p~~y~~-------i~d~~~~~El~~~~~tvEy~~p~~~~~-p~~p~~~~pv~l 330 (950)
||+|||++|.++|++|+||||+.+|++|.+|++ ..|.+.++||+ .|||||++++++.. .|.|. .|+|+
T Consensus 346 aYinPFmqF~~~gr~f~Cn~C~~~n~vp~~yf~~L~~~grr~D~~erpEL~--~Gt~dfvatk~Y~~~~k~p~--ppafv 421 (1007)
T KOG1984|consen 346 AYINPFMQFIDGGRKFICNFCGSKNQVPDDYFNHLGPTGRRVDVEERPELC--LGTVDFVATKDYCRKTKPPK--PPAFV 421 (1007)
T ss_pred hhcCcceEEecCCceEEecCCCccccCChhhcccCCCcccccccccCchhc--ccccceeeehhhhhcCCCCC--CceEE
Confidence 999999999999999999999999999999973 46889999996 79999999998631 01111 19999
Q ss_pred cccceEEEEcchhhhhh----------hcCCCCCCC---CCeeeeEeeccccceEEeecccccCcccceeeeccccCCCC
Q psy13068 331 PFLIQFVFFLAITHLIN----------QVGSPNLPP---LQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAF 397 (950)
Q Consensus 331 ~~~~~fviD~s~~~lk~----------~~~l~~Lp~---~~~vglit~~~~~s~v~~~~~~~~~~~~~~v~~~~~~~~~~ 397 (950)
|+||||++++++ +.+|+.||. +.+||||||| ++|||||+..+.-
T Consensus 422 -----FmIDVSy~Ai~~G~~~a~ce~ik~~l~~lp~~~p~~~Vgivtfd---~tvhFfnl~s~L~--------------- 478 (1007)
T KOG1984|consen 422 -----FMIDVSYNAISNGAVKAACEAIKSVLEDLPREEPNIRVGIVTFD---KTVHFFNLSSNLA--------------- 478 (1007)
T ss_pred -----EEEEeehhhhhcchHHHHHHHHHHHHhhcCccCCceEEEEEEec---ceeEeeccCcccc---------------
Confidence 999999988765 567777773 5999999999 8999999974321
Q ss_pred chhhhhhhhccCCcCCCCCcceEEEeeeccceeeeecccccceecccccccccccCCcccccccccCCCchHHHHHhhhc
Q psy13068 398 PPQYAAITEQHQPAELHPQFTTIEYTIPLLYSITYITENDNVIRRNEIHIKPRICGLQEENIEEKFDDSSQEEYFEAEDQ 477 (950)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~ 477 (950)
T Consensus 479 -------------------------------------------------------------------------------- 478 (1007)
T KOG1984|consen 479 -------------------------------------------------------------------------------- 478 (1007)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCchhhHHHhhhhcccccccCCchhhhHHHhhhhHHHHHhhcCCCCCCCCCCCCCccccccccccccccccccccc
Q psy13068 478 EGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERETKMEEECQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQV 557 (950)
Q Consensus 478 ~~~~~pq~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~s~~lp~~~~~~~~~~~~l~rs~fL~~ 557 (950)
+|| |.++.|.+| +.+|- .+.|++.
T Consensus 479 ----qp~---------mliVsdv~d------------------------------vfvPf-------------~~g~~V~ 502 (1007)
T KOG1984|consen 479 ----QPQ---------MLIVSDVDD------------------------------VFVPF-------------LDGLFVN 502 (1007)
T ss_pred ----Cce---------EEEeecccc------------------------------ccccc-------------ccCeecc
Confidence 122 222333333 23332 2677888
Q ss_pred cCCCCcchHHHHHHHhhCCCCCccceeeeccCCCCCccccccccchHHHHHHHHhhcccccccccC-CCCceEecccc--
Q psy13068 558 FNNSPDETSYYRTLLIHLPHYSRFQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFN-GPPVPVLLDTS-- 634 (950)
Q Consensus 558 l~e~~~~~~~i~~lL~~L~~~~~~~~lqvf~~s~~~~~~~r~~G~~~Al~~A~~ll~p~~~~~~f~-gGp~~v~l~s~-- 634 (950)
.+||+.. |+.||++||. +|. +.+.++.++| +||++|..+|| .. ||+. ++|.+.
T Consensus 503 ~~es~~~---i~~lLd~Ip~--------mf~---~sk~pes~~g--~alqaa~lalk-------~~~gGKl-~vF~s~Lp 558 (1007)
T KOG1984|consen 503 PNESRKV---IELLLDSIPT--------MFQ---DSKIPESVFG--SALQAAKLALK-------AADGGKL-FVFHSVLP 558 (1007)
T ss_pred chHHHHH---HHHHHHHhhh--------hhc---cCCCCchhHH--HHHHHHHHHHh-------ccCCceE-EEEecccc
Confidence 8888776 9999999999 775 4556889999 99999999999 34 9999 555554
Q ss_pred ccCCc-eeecccchhhhhhccCCCccccccccccccchhhhhhHHHHHHHHHHHhhcccEEEEEeccCCCCCchhhhhhh
Q psy13068 635 SIKPD-CILLMDTFFQLLIFHGEEPIRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKLCC 713 (950)
Q Consensus 635 s~GPG-~i~~~d~~~~~~~~~~~~~irs~~d~~k~~~~~~~pa~~FYk~LA~~~~~~gIsVDLF~~s~~~vdlatl~~L~ 713 (950)
++|-| +++.++| +.+...+|+| +++.|++++|++||++|++.|+|||||+++.+|+|+|+++.++
T Consensus 559 t~g~g~kl~~r~D-------------~~l~~t~kek-~l~~pq~~~y~~LA~e~v~~g~svDlF~t~~ayvDvAtlg~v~ 624 (1007)
T KOG1984|consen 559 TAGAGGKLSNRDD-------------RRLIGTDKEK-NLLQPQDKTYTTLAKEFVESGCSVDLFLTPNAYVDVATLGVVP 624 (1007)
T ss_pred cccCcccccccch-------------hhhhcccchh-hccCcchhHHHHHHHHHHHhCceEEEEEcccceeeeeeecccc
Confidence 88866 8887776 4445555554 8999999999999999999999999999999999999999999
Q ss_pred hccCCCcEEEEcCCCCC----------------------------CCCCeeEeeecCCC---------------------
Q psy13068 714 NATGKPSHVLIAIEFAQ----------------------------PSPMLKAQKRLGST--------------------- 744 (950)
Q Consensus 714 ~~TGG~~~v~~y~~F~~----------------------------~S~GlkV~~~~GsT--------------------- 744 (950)
+.||| ++|+|..|.. ||+||++.+|||++
T Consensus 625 ~~TgG--~vy~Y~~F~a~~D~~rl~nDL~~~vtk~~gf~a~mrvRtStGirv~~f~Gnf~~~~~tDiela~lD~dkt~~v 702 (1007)
T KOG1984|consen 625 ALTGG--QVYKYYPFQALTDGPRLLNDLVRNVTKKQGFDAVMRVRTSTGIRVQDFYGNFLMRNPTDIELAALDCDKTLTV 702 (1007)
T ss_pred cccCc--eeEEecchhhcccHHHHHHHHHHhcccceeeeeEEEEeecCceeeeeeechhhhcCCCCccccccccCceeEE
Confidence 99999 9999999987 99999999999951
Q ss_pred cCCCCCCCCCCCceEEEEEEeeecCCCcEEEEEEeeeecccccCCCHHHHHhccCHHHHHHHHHHHHHHHhhcCChHHHH
Q psy13068 745 TAAHGAPIPQGGRGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVM 824 (950)
Q Consensus 745 t~~~de~L~~~~~~yIQ~AlLYT~~~GeRRIRV~Tl~l~~~pvts~l~~v~~s~D~eAi~~llaR~av~~~~~~~l~d~r 824 (950)
+|+|||+|+++..+|||+|+|||+.+|+||+||+|+++ ++|++++++|+++|+|+++++|+|.|+..+.++.+.++|
T Consensus 703 ~fkhDdkLq~~s~~~fQ~AlLYTti~G~RR~Rv~Nlsl---~~ts~l~~lyr~~~~d~l~a~maK~a~~~i~~~~lk~vr 779 (1007)
T KOG1984|consen 703 EFKHDDKLQDGSDVHFQTALLYTTIDGQRRLRVLNLSL---AVTSQLSELYRSADTDPLIAIMAKQAAKAILDKPLKEVR 779 (1007)
T ss_pred EEeccccccCCcceeEEEEEEEeccCCceeEEEEecch---hhhhhHHHHHHhcCccHHHHHHHHHHHHhcccccHHHHH
Confidence 28999999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCC--CCCccccCcccccHHHHHHHHHhcccccCCCCChhHHHHHHHHHcCCCHHhHHhcccc
Q psy13068 825 RWADRTLIRLCQKFGHYNKD--DPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQP 902 (950)
Q Consensus 825 ~~L~~~lv~il~~Yr~~~~~--~~~qliLPesLklLP~yi~~LlKS~~Lr~~n~spDeR~~~~~~l~s~~v~~~l~~iYP 902 (950)
+.+++.|+++|++||+.|++ +++||||||+||+||+|+++++||.+|+..+++.|+|+|.+.++.++++++++.++||
T Consensus 780 e~l~~~~~~iL~~YRk~cas~~ssgQLILPeslKLlPly~la~lKs~~l~~~~~~~DdRi~~~~~v~sl~v~~~~~~~YP 859 (1007)
T KOG1984|consen 780 EQLVSQCAQILASYRKNCASPASSGQLILPESLKLLPLYMLALLKSSALRPQEIRTDDRIYQLQLVTSLSVEQLMPFFYP 859 (1007)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCcccEechhhhHHHHHHHHHHHHhhcccccccccchhHHHHHHhhcccHHhhhhhhcc
Confidence 99999999999999999965 8899999999999999999999999999888999999999999999999999999999
Q ss_pred ceEEec-cC-------CCCcccccccccccCCeEEEEECCCEEEEEEcCCCCC
Q psy13068 903 VLYSYG-FN-------GPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEVSNA 947 (950)
Q Consensus 903 ~L~slh-~~-------g~P~~v~LS~esL~~dgIyLLD~g~~I~IwvG~~V~~ 947 (950)
||+++| ++ ..|.+|++|.|.|+.+||||||||.++|||+|++|++
T Consensus 860 rl~p~hdl~i~dtl~~~~p~~VraS~e~l~negiYll~nG~~~ylwvg~sv~~ 912 (1007)
T KOG1984|consen 860 RLLPFHDLDIEDTLEFVLPKAVRASSEFLSNEGIYLLDNGQKIYLWVGESVDP 912 (1007)
T ss_pred ceeeeeccccccccccccccceecchhhccCCceEEEecCcEEEEEecCCCCH
Confidence 999999 42 1399999999999999999999999999999999974
No 5
>KOG1985|consensus
Probab=100.00 E-value=1.4e-94 Score=835.12 Aligned_cols=535 Identities=20% Similarity=0.316 Sum_probs=462.8
Q ss_pred cCCCeeeeeccccCCCHHHHhhcccceEEEeccCCC---CCCCCCCC-CcccccccccccceeeccceEeCCCCeeEecC
Q psy13068 203 EERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKE---KPDLPPLQ-YEPLLCMRNQCRAILNPLCQVDYKSKLWVCNF 278 (950)
Q Consensus 203 e~~~~iR~t~~~~P~t~~~a~k~~~Plg~~~~Pl~~---~~~~p~~~-~~p~rC~~~~C~aylNP~~~~d~~g~~w~C~~ 278 (950)
-.++++|+|.+.+|.+.++++|+++|+|++++|++. ...+|+.. ..|+||++ ||+|||||+.|++.|++|+||+
T Consensus 168 c~p~y~RsTl~~iP~t~sLl~kskLPlglvv~Pf~~~~d~~~~p~~~~~~IvRCr~--CRtYiNPFV~fid~gr~WrCNl 245 (887)
T KOG1985|consen 168 CSPSYVRSTLSAIPQTQSLLKKSKLPLGLVVHPFAHLDDIDPLPVITSTLIVRCRR--CRTYINPFVEFIDQGRRWRCNL 245 (887)
T ss_pred CCHHHHHHHHHhCCccHHHHHhcCCCceEEEeecccccccCCCCcccCCceeeehh--hhhhcCCeEEecCCCceeeech
Confidence 357999999999999999999999999999999994 34455544 58999999 9999999999999999999999
Q ss_pred CCCCCCCchhhhh------ccccCCCCcccCCCceEEEEccCCCCC-CCCCCCCcceeecccceEEEEcchhhhhh----
Q psy13068 279 CFQRNAFPPQYAA------ITEQHQPAELHPQFTTIEYTIPVSQCF-PKYPLRSLPVFLPFLIQFVFFLAITHLIN---- 347 (950)
Q Consensus 279 C~~~N~~p~~y~~------i~d~~~~~El~~~~~tvEy~~p~~~~~-p~~p~~~~pv~l~~~~~fviD~s~~~lk~---- 347 (950)
|+..|++|.+|+. -.+...|||+ ++++|||++|.++.. |+.| ++|+ |+||++..++|+
T Consensus 246 C~~~NdvP~~f~~~~~t~~~~~~~~RpEl--~~s~vE~iAP~eYmlR~P~P----avy~-----FliDVS~~a~ksG~L~ 314 (887)
T KOG1985|consen 246 CGRVNDVPDDFDWDPLTGAYGDPYSRPEL--TSSVVEFIAPSEYMLRPPQP----AVYV-----FLIDVSISAIKSGYLE 314 (887)
T ss_pred hhhhcCCcHHhhcCccccccCCcccCccc--cceeEEEecCcccccCCCCC----ceEE-----EEEEeehHhhhhhHHH
Confidence 9999999999973 3577889999 489999999999631 2222 9999 999999998886
Q ss_pred ------hcCCCCCCC--CCeeeeEeeccccceEEeecccccCcccceeeeccccCCCCchhhhhhhhccCCcCCCCCcce
Q psy13068 348 ------QVGSPNLPP--LQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTT 419 (950)
Q Consensus 348 ------~~~l~~Lp~--~~~vglit~~~~~s~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (950)
...||.||+ .++||||||| ++||||+...+.
T Consensus 315 ~~~~slL~~LD~lpgd~Rt~igfi~fD---s~ihfy~~~~~~-------------------------------------- 353 (887)
T KOG1985|consen 315 TVARSLLENLDALPGDPRTRIGFITFD---STIHFYSVQGDL-------------------------------------- 353 (887)
T ss_pred HHHHHHHHhhhcCCCCCcceEEEEEee---ceeeEEecCCCc--------------------------------------
Confidence 578899994 4999999999 999999987421
Q ss_pred EEEeeeccceeeeecccccceecccccccccccCCcccccccccCCCchHHHHHhhhccCCCCCchhhHHHhhhhccccc
Q psy13068 420 IEYTIPLLYSITYITENDNVIRRNEIHIKPRICGLQEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEED 499 (950)
Q Consensus 420 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~pq~~~~~~~~~~~~~~d 499 (950)
.+|| |+++.|
T Consensus 354 -------------------------------------------------------------~qp~---------mm~vsd 363 (887)
T KOG1985|consen 354 -------------------------------------------------------------NQPQ---------MMIVSD 363 (887)
T ss_pred -------------------------------------------------------------CCCc---------eeeecc
Confidence 0122 222333
Q ss_pred ccCCchhhhHHHhhhhHHHHHhhcCCCCCCCCCCCCCccccccccccccccccccccccCCCCcchHHHHHHHhhCCCCC
Q psy13068 500 QEDGNEEIEDERETKMEEECQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRTLLIHLPHYS 579 (950)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~s~~lp~~~~~~~~~~~~l~rs~fL~~l~e~~~~~~~i~~lL~~L~~~~ 579 (950)
.|| | ..++| ..||+|+.+||+. |+.+|++||.
T Consensus 364 l~d---------------------------~-flp~p---------------d~lLv~L~~ck~~---i~~lL~~lp~-- 395 (887)
T KOG1985|consen 364 LDD---------------------------P-FLPMP---------------DSLLVPLKECKDL---IETLLKTLPE-- 395 (887)
T ss_pred ccc---------------------------c-ccCCc---------------hhheeeHHHHHHH---HHHHHHHHHH--
Confidence 333 0 02233 4789999999877 9999999998
Q ss_pred ccceeeeccCCCCCccccccccchHHHHHHHHhhcccccccccCCCCceEecccc-ccCCceeecccchhhhhhccCCCc
Q psy13068 580 RFQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTS-SIKPDCILLMDTFFQLLIFHGEEP 658 (950)
Q Consensus 580 ~~~~lqvf~~s~~~~~~~r~~G~~~Al~~A~~ll~p~~~~~~f~gGp~~v~l~s~-s~GPG~i~~~d~~~~~~~~~~~~~ 658 (950)
+|. ++....+++| .||++|..+|+ -+||++.+++.+. ++|.|+|+.|++ +.
T Consensus 396 ------~F~---~~~~t~~alG--pALkaaf~li~-------~~GGri~vf~s~lPnlG~G~L~~rEd--------p~-- 447 (887)
T KOG1985|consen 396 ------MFQ---DTRSTGSALG--PALKAAFNLIG-------STGGRISVFQSTLPNLGAGKLKPRED--------PN-- 447 (887)
T ss_pred ------HHh---hccCcccccC--HHHHHHHHHHh-------hcCCeEEEEeccCCCCCccccccccc--------cc--
Confidence 674 5666689999 99999999999 4788886666665 999999997755 22
Q ss_pred cccccccccccchhhhhhHHHHHHHHHHHhhcccEEEEEeccCCCCCchhhhhhhhccCCCcEEEEcCCCCC--------
Q psy13068 659 IRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNATGKPSHVLIAIEFAQ-------- 730 (950)
Q Consensus 659 irs~~d~~k~~~~~~~pa~~FYk~LA~~~~~~gIsVDLF~~s~~~vdlatl~~L~~~TGG~~~v~~y~~F~~-------- 730 (950)
++. .+++.+++.++++|||++|.+|++.||+||+|+++.+|.|+|+|+.|+++||| .+||||+|+.
T Consensus 448 ---~~~-s~~~~qlL~~~t~FYK~~a~~cs~~qI~VDlFl~s~qY~DlAsLs~LskySgG--~~y~YP~f~~s~p~~~~K 521 (887)
T KOG1985|consen 448 ---VRS-SDEDSQLLSPATDFYKDLALECSKSQICVDLFLFSEQYTDLASLSCLSKYSGG--QVYYYPSFDGSNPHDVLK 521 (887)
T ss_pred ---ccc-chhhhhccCCCchHHHHHHHHhccCceEEEEEeecccccchhhhhccccccCc--eeEEccCCCCCCHHHHHH
Confidence 122 23456789999999999999999999999999999999999999999999999 9999999987
Q ss_pred ----------------------CCCCeeEeeecCC-----C------c----------CCCCCCCCCCCceEEEEEEeee
Q psy13068 731 ----------------------PSPMLKAQKRLGS-----T------T----------AAHGAPIPQGGRGCIQFITHYQ 767 (950)
Q Consensus 731 ----------------------~S~GlkV~~~~Gs-----T------t----------~~~de~L~~~~~~yIQ~AlLYT 767 (950)
||+|+++++|||| + + +..||++ .....+||.|+|||
T Consensus 522 f~~el~r~Ltr~~~feaVmRiR~S~gl~~~~f~GnFF~RStDLla~~~v~~D~sy~~qisiEesl-~~~~~~fQvAlLyT 600 (887)
T KOG1985|consen 522 FARELARYLTRKIGFEAVMRIRCSTGLRMSSFFGNFFVRSTDLLALPNVNPDQSYAFQISIEESL-TTGFCVFQVALLYT 600 (887)
T ss_pred HHHHHHHHhhhhhhhheeEEeeccccccccceecccccCcHHHhcccCCCCCccceEEEEeehhc-CCceeEEEeeeeec
Confidence 9999999999995 1 1 3445666 45567899999999
Q ss_pred cCCCcEEEEEEeeeecccccCCCHHHHHhccCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcccCC---
Q psy13068 768 APSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLIRLCQKFGHYNKD--- 844 (950)
Q Consensus 768 ~~~GeRRIRV~Tl~l~~~pvts~l~~v~~s~D~eAi~~llaR~av~~~~~~~l~d~r~~L~~~lv~il~~Yr~~~~~--- 844 (950)
.+.|||||||||+++ |+++++.|||+++|++|++.+++++|++++++..+.|+|+.|.+++++++++|++..+.
T Consensus 601 ~~~GERRIRV~T~~l---pt~~sl~evY~saD~~AI~~lla~~Av~ksl~ssL~dardal~~~~~D~l~aYk~~~~~~~~ 677 (887)
T KOG1985|consen 601 LSKGERRIRVHTLCL---PTVSSLNEVYASADQEAIASLLAKKAVEKSLSSSLSDARDALTNAVVDILNAYKKLVSNQNG 677 (887)
T ss_pred ccCCceeEEEEEeec---cccccHHHHHhhcCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999 99999999999999999999999999999999999999999999999999999997743
Q ss_pred CCCccccCcccccHHHHHHHHHhccccc-CCCCChhHHHHHHHHHcCCCHHhHHhccccceEEec-cCC-----------
Q psy13068 845 DPHSFQLPENFQMYPQFMYHLRRSQFLQ-VFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYG-FNG----------- 911 (950)
Q Consensus 845 ~~~qliLPesLklLP~yi~~LlKS~~Lr-~~n~spDeR~~~~~~l~s~~v~~~l~~iYP~L~slh-~~g----------- 911 (950)
....|.+|.+|++||+|+++|+|+++|| +.++++|+|+|+++++.++++..++++|||.||++| ++.
T Consensus 678 ~~~~l~~p~~LrllPllvlALlK~~~fr~g~~~~lD~R~~a~~~~~~lpl~~L~k~IYP~Lysl~~l~~ea~~~~~d~~~ 757 (887)
T KOG1985|consen 678 QGITLSLPASLRLLPLLVLALLKHPAFRPGTGTRLDYRAYAMCLMSTLPLKYLMKYIYPTLYSLHDLDDEAGLPIHDQTV 757 (887)
T ss_pred CCcceecCcchhhhHHHHHHHhcCCcccCCCCCCchHHHHHHHHhhcCCHHHHHhhhcccceeccccccccCcccccccc
Confidence 5568999999999999999999999999 569999999999999999999999999999999999 421
Q ss_pred -CCcccccccccccCCeEEEEECCCEEEEEEcCCCCC
Q psy13068 912 -PPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEVSNA 947 (950)
Q Consensus 912 -~P~~v~LS~esL~~dgIyLLD~g~~I~IwvG~~V~~ 947 (950)
.|++++|+.+.+++.|+||||+|..++||+|+++..
T Consensus 758 ~~p~~L~ltae~l~~~GlyL~D~g~~lfl~vg~~a~P 794 (887)
T KOG1985|consen 758 VLPPPLNLTAELLSRRGLYLMDTGTTLFLWVGSNADP 794 (887)
T ss_pred cCCCccchHHHHhccCceEEEecCcEEEEEEcCCCCc
Confidence 279999999999999999999999999999999864
No 6
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=100.00 E-value=4e-85 Score=751.02 Aligned_cols=527 Identities=20% Similarity=0.318 Sum_probs=458.4
Q ss_pred ccCCCeeeeeccccCCCHHHHhhcccceEEEeccCCCCCC---CCCCCC--cccccccccccceeeccceEeCCCCeeEe
Q psy13068 202 NEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPD---LPPLQY--EPLLCMRNQCRAILNPLCQVDYKSKLWVC 276 (950)
Q Consensus 202 ~e~~~~iR~t~~~~P~t~~~a~k~~~Plg~~~~Pl~~~~~---~p~~~~--~p~rC~~~~C~aylNP~~~~d~~g~~w~C 276 (950)
+++++++|+|++++|.+..+.+++++|||++++|+.+..+ .+.+.. .|+||++ ||+|+|||.+|..+|++|+|
T Consensus 147 n~~p~yvrsT~yaiP~t~dl~~~skiPfgLVI~Pf~~l~~e~~~vpl~~d~~ivRCrr--CrsYiNPfv~fi~~g~kw~C 224 (861)
T COG5028 147 NCSPKYVRSTMYAIPETNDLLKKSKIPFGLVIRPFLELYPEEDPVPLVEDGSIVRCRR--CRSYINPFVQFIEQGRKWRC 224 (861)
T ss_pred CCCHHHHHHHHhhCCCchhHHHhcCCCceEEeehhhhcCccCCCCccCCCCcchhhhh--hHhhcCceEEEecCCcEEEE
Confidence 4457899999999999999999999999999999876432 333333 4899999 99999999999999999999
Q ss_pred cCCCCCCCCchhhhh-------ccccCCCCcccCCCceEEEEccCCCC--CCCCCCCCcceeecccceEEEEcchhhhhh
Q psy13068 277 NFCFQRNAFPPQYAA-------ITEQHQPAELHPQFTTIEYTIPVSQC--FPKYPLRSLPVFLPFLIQFVFFLAITHLIN 347 (950)
Q Consensus 277 ~~C~~~N~~p~~y~~-------i~d~~~~~El~~~~~tvEy~~p~~~~--~p~~p~~~~pv~l~~~~~fviD~s~~~lk~ 347 (950)
|+|+..|++|..|+. ..|..+|+||+ ++++||++|+++. +|+ | |+|+ |+||+|..++++
T Consensus 225 NiC~~kN~vp~~~~~~~~~~~~r~d~~~r~El~--~~vvdf~ap~~Y~~~~p~-P----~~yv-----FlIDVS~~a~~~ 292 (861)
T COG5028 225 NICRSKNDVPEGFDNPSGPNDPRSDRYSRPELK--SGVVDFLAPKEYSLRQPP-P----PVYV-----FLIDVSFEAIKN 292 (861)
T ss_pred eeccccccCcccccCcCCCCCccccccccchhh--ceeeEEecccceeeccCC-C----CEEE-----EEEEeehHhhhc
Confidence 999999999999872 35678899996 8999999999863 222 2 8999 999999988775
Q ss_pred ----------hcCCCCCC---CCCeeeeEeeccccceEEeecccccCcccceeeeccccCCCCchhhhhhhhccCCcCCC
Q psy13068 348 ----------QVGSPNLP---PLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELH 414 (950)
Q Consensus 348 ----------~~~l~~Lp---~~~~vglit~~~~~s~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (950)
...++.+| +.++|+||||| ++|||+++..+. ++
T Consensus 293 g~~~a~~r~Il~~l~~~~~~dpr~kIaii~fD---~sl~ffk~s~d~-----------~~-------------------- 338 (861)
T COG5028 293 GLVKAAIRAILENLDQIPNFDPRTKIAIICFD---SSLHFFKLSPDL-----------DE-------------------- 338 (861)
T ss_pred chHHHHHHHHHhhccCCCCCCCcceEEEEEEc---ceeeEEecCCCC-----------cc--------------------
Confidence 45566665 45999999999 899998886421 00
Q ss_pred CCcceEEEeeeccceeeeecccccceecccccccccccCCcccccccccCCCchHHHHHhhhccCCCCCchhhHHHhhhh
Q psy13068 415 PQFTTIEYTIPLLYSITYITENDNVIRRNEIHIKPRICGLQEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRI 494 (950)
Q Consensus 415 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~pq~~~~~~~~~~ 494 (950)
++
T Consensus 339 -------------------------------------------------------~~----------------------- 340 (861)
T COG5028 339 -------------------------------------------------------QM----------------------- 340 (861)
T ss_pred -------------------------------------------------------ce-----------------------
Confidence 00
Q ss_pred cccccccCCchhhhHHHhhhhHHHHHhhcCCCCCCCCCCCCCccccccccccccccccccccccCCCCcchHHHHHHHhh
Q psy13068 495 EDEEDQEDGNEEIEDERETKMEEECQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRTLLIH 574 (950)
Q Consensus 495 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~s~~lp~~~~~~~~~~~~l~rs~fL~~l~e~~~~~~~i~~lL~~ 574 (950)
.++.|.|+ +.||. ....||.|+++|+.. ++.||+.
T Consensus 341 ~~vsdld~------------------------------pFlPf------------~s~~fv~pl~~~k~~---~etLl~~ 375 (861)
T COG5028 341 LIVSDLDE------------------------------PFLPF------------PSGLFVLPLKSCKQI---IETLLDR 375 (861)
T ss_pred eeeccccc------------------------------ccccC------------CcchhcccHHHHHHH---HHHHHHH
Confidence 00111111 23443 124789999999887 8889999
Q ss_pred CCCCCccceeeeccCCCCCccccccccchHHHHHHHHhhcccccccccCCCCceEecccc-ccCCceeecccchhhhhhc
Q psy13068 575 LPHYSRFQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTS-SIKPDCILLMDTFFQLLIF 653 (950)
Q Consensus 575 L~~~~~~~~lqvf~~s~~~~~~~r~~G~~~Al~~A~~ll~p~~~~~~f~gGp~~v~l~s~-s~GPG~i~~~d~~~~~~~~ 653 (950)
.+. +|. +++.++.|+| .||++|..+++ .+||++.+++.|- ++|-|++.+|+|
T Consensus 376 ~~~--------If~---d~~~pk~~~G--~aLk~a~~l~g-------~~GGkii~~~stlPn~G~Gkl~~r~d------- 428 (861)
T COG5028 376 VPR--------IFQ---DNKSPKNALG--PALKAAKSLIG-------GTGGKIIVFLSTLPNMGIGKLQLRED------- 428 (861)
T ss_pred hhh--------hhc---ccCCCccccC--HHHHHHHHHhh-------ccCceEEEEeecCCCccccccccccc-------
Confidence 888 664 6788899999 99999999999 7899998999886 999999996644
Q ss_pred cCCCccccccccccccchhhhhhHHHHHHHHHHHhhcccEEEEEeccCCCCCchhhhhhhhccCCCcEEEEcCCCCC---
Q psy13068 654 HGEEPIRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNATGKPSHVLIAIEFAQ--- 730 (950)
Q Consensus 654 ~~~~~irs~~d~~k~~~~~~~pa~~FYk~LA~~~~~~gIsVDLF~~s~~~vdlatl~~L~~~TGG~~~v~~y~~F~~--- 730 (950)
+ +..++.+.++|||++|.+|++.||+||+|+++.+|+|+||++.|+++||| .+|+|++|+.
T Consensus 429 -------------~-e~~ll~c~d~fYk~~a~e~~k~gIsvd~Flt~~~yidvaTls~l~~~T~G--~~~~Yp~f~~~~~ 492 (861)
T COG5028 429 -------------K-ESSLLSCKDSFYKEFAIECSKVGISVDLFLTSEDYIDVATLSHLCRYTGG--QTYFYPNFSATRP 492 (861)
T ss_pred -------------c-hhhhccccchHHHHHHHHHHHhcceEEEEeccccccchhhhcchhhccCc--ceEEcCCcccCCc
Confidence 1 22378899999999999999999999999999999999999999999999 9999999987
Q ss_pred ---------------------------CCCCeeEeeecCCC---------------------cCCCCCCCCCCCceEEEE
Q psy13068 731 ---------------------------PSPMLKAQKRLGST---------------------TAAHGAPIPQGGRGCIQF 762 (950)
Q Consensus 731 ---------------------------~S~GlkV~~~~GsT---------------------t~~~de~L~~~~~~yIQ~ 762 (950)
||+|+++.+|||++ ++++|+++.. ..+|||.
T Consensus 493 ~d~~kl~~dL~~~ls~~~gy~~~~rvR~S~glr~s~fyGnf~~rs~dl~~F~tm~rd~Sl~~~~sid~~l~~-~~v~fQv 571 (861)
T COG5028 493 NDATKLANDLVSHLSMEIGYEAVMRVRCSTGLRVSSFYGNFFNRSSDLCAFSTMPRDTSLLVEFSIDEKLMT-SDVYFQV 571 (861)
T ss_pred hhHHHHHHHHHHhhhhhhhhheeeEeeccCceehhhhhccccccCcccccccccCCCceEEEEEEecccccC-CceEEEE
Confidence 99999999999951 1678889865 8999999
Q ss_pred EEeeecCCCcEEEEEEeeeecccccCCCHHHHHhccCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhccc
Q psy13068 763 ITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLIRLCQKFGHYN 842 (950)
Q Consensus 763 AlLYT~~~GeRRIRV~Tl~l~~~pvts~l~~v~~s~D~eAi~~llaR~av~~~~~~~l~d~r~~L~~~lv~il~~Yr~~~ 842 (950)
|+|||..+|||||||.|+++ ++++++.|+|+++||+|++.+|+|.|+.++.+..+.++|+.|++.+++||++||+.+
T Consensus 572 AlL~T~~~GeRRiRVvn~s~---~~ss~~~evyasadq~aIa~~lak~a~~~~~~~s~~~~r~~i~~s~~~IL~~Ykk~~ 648 (861)
T COG5028 572 ALLYTLNDGERRIRVVNLSL---PTSSSIREVYASADQLAIACILAKKASTKALNSSLKEARVLINKSMVDILKAYKKEL 648 (861)
T ss_pred EEEeeccCCceEEEEEEecc---ccchhHHHHHHhccHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 999999999999999999999999999999999999999999999999999999966
Q ss_pred --CCCCCccccCcccccHHHHHHHHHhcccccCCCCChhHHHHHHHHHcCCCHHhHHhccccceEEec-c---CC-----
Q psy13068 843 --KDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYG-F---NG----- 911 (950)
Q Consensus 843 --~~~~~qliLPesLklLP~yi~~LlKS~~Lr~~n~spDeR~~~~~~l~s~~v~~~l~~iYP~L~slh-~---~g----- 911 (950)
.+.++|+.||++||+||++|++|+||.+||...++.|.|+++...+.++++..+++.|||+||++| + .|
T Consensus 649 ~~snt~tql~Lp~nL~lLPll~lal~Ks~~~rs~~~~sD~r~~~L~~l~~~p~~~l~~~iYP~lyalHdm~~e~~l~~~~ 728 (861)
T COG5028 649 VKSNTSTQLPLPANLKLLPLLMLALLKSSAFRSGSTPSDIRISALNRLTSLPLKQLMRNIYPTLYALHDMPIEAGLPDEG 728 (861)
T ss_pred hhccCCccccchhhhHHHHHHHHHHhhhcccccCCCccchhHHHHHHhhcCCHHHHHHhhccceeeecccccccCCCccc
Confidence 458899999999999999999999999999777889999999999999999999999999999999 4 11
Q ss_pred ---CCcccccccccccCCeEEEEECCCEEEEEEcCCCC
Q psy13068 912 ---PPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEVSN 946 (950)
Q Consensus 912 ---~P~~v~LS~esL~~dgIyLLD~g~~I~IwvG~~V~ 946 (950)
.|.++.++.+.|.++|+||+|+|.++|||+|+++.
T Consensus 729 ~~~~~~piNaT~s~le~~GlYLidtg~~iflw~g~d~~ 766 (861)
T COG5028 729 LLVLPSPINATSSLLESGGLYLIDTGQKIFLWFGKDAV 766 (861)
T ss_pred ccccccchhhhHHHHhcCCeEEEEcCCEEEEEecCCCC
Confidence 28899999999999999999999999999999876
No 7
>KOG1986|consensus
Probab=100.00 E-value=3e-89 Score=781.00 Aligned_cols=552 Identities=32% Similarity=0.528 Sum_probs=483.8
Q ss_pred HHHhccCCCCceEEeecccCCchhhhhhcccCceeeeecCCCCCCCCCCcccceeeccccccceecccccccccccccCc
Q psy13068 6 EFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQGCVSSTLEAL 85 (950)
Q Consensus 6 ~~~~~~~~~~~~r~~wn~~p~s~~~~~~~~~p~g~~~~p~~~~~~~p~~~~~p~~c~~~~c~~~~np~~~~~~~~~~~~~ 85 (950)
||++++|++||||||||+||++|.|++|+++|++||||||+|++++|+++|+|++|++ |+|||||||+ +|+++|.
T Consensus 1 ~~~~~~e~~dGvR~twnvwPs~~~~~~~~vvPla~lytPl~e~~~~~~~~y~P~~C~~--C~AvlNPyc~---vd~~a~~ 75 (745)
T KOG1986|consen 1 EFIEDIEEIDGVRFTWNVWPSTRAEASRTVVPLACLYTPLKERPDLPPIQYDPLRCSK--CGAVLNPYCS---VDFRAKS 75 (745)
T ss_pred CcccccccCCCcccccccCCCcccccccccccHHHhccccccCCCCCccCCCCchhcc--chhhcCccee---ecccCce
Confidence 5788999999999999999999999999999999999999999999999999999995 9999999999 9999999
Q ss_pred eecccccccc------CCCccccc------ccccceeeeccccccCcccccCcccCCCCCccccccccccccccccchhh
Q psy13068 86 WLKSIFFQAE------DGIRDRSF------GFHNSSVNIVRSVGHGVINHFGFRVGDESKTSRSFRDGILHDNNIYNFTP 153 (950)
Q Consensus 86 w~c~~c~~~n------~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (950)
|.|+||+||| .++.+.+. ++++.+|++.|....+++ |.+
T Consensus 76 W~CpfC~qrN~~p~~Y~~is~~n~P~el~Pq~stvEy~l~~~~~~ppv-----------------------------f~f 126 (745)
T KOG1986|consen 76 WICPFCNQRNPFPPHYSGISENNLPPELLPQYSTVEYTLSPGRVSPPV-----------------------------FVF 126 (745)
T ss_pred EeccccccCCCCChhhcccCccCCChhhcCCcceeEEecCCCCCCCce-----------------------------EEE
Confidence 9999999999 46666554 889999999987777666 899
Q ss_pred hhhhhcCCCCCCccccCCcccccccceeeeeccccc----ccchhhHHHHhhcc-CCCeeeeeccccCCCHHHHhhcccc
Q psy13068 154 LFKECLHPPNGRVLEWNGTRVAHSTLTVQLSLETLK----ISMTTYEEFFYQNE-ERDGIRCTWNVWPSSKLEASRLVMP 228 (950)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~r~~~st~~~~~~~~~~~----~~~~~~~~~~~~~e-~~~~iR~t~~~~P~t~~~a~k~~~P 228 (950)
|||+|++++++.+||.. ++++|+.|| ||++||+.+++++| +.+++|.++.+.++++..+++++-.
T Consensus 127 VvDtc~~eeeL~~Lkss----------L~~~l~lLP~~alvGlItfg~~v~v~el~~~~~sk~~VF~G~ke~s~~q~~~~ 196 (745)
T KOG1986|consen 127 VVDTCMDEEELQALKSS----------LKQSLSLLPENALVGLITFGTMVQVHELGFEECSKSYVFSGNKEYSAKQLLDL 196 (745)
T ss_pred EEeeccChHHHHHHHHH----------HHHHHhhCCCcceEEEEEecceEEEEEcCCCcccceeEEeccccccHHHHHHH
Confidence 99999999999999999 999999999 99999999999999 9999999999999999999999999
Q ss_pred eEEEeccCCCCCCCCCCCCcccccccccccceeeccceEeCCCCeeEecCCCCCCCCchhhhhccccCCCCcccCCCceE
Q psy13068 229 VGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTI 308 (950)
Q Consensus 229 lg~~~~Pl~~~~~~p~~~~~p~rC~~~~C~aylNP~~~~d~~g~~w~C~~C~~~N~~p~~y~~i~d~~~~~El~~~~~tv 308 (950)
+|..+.+-+... +. .. -..|+.|...|+ +.+.+.....+-++
T Consensus 197 L~~~~~~~~~~~--~~--------~~--~~rFL~P~~~c~---------------------~~L~~lle~L~~d~----- 238 (745)
T KOG1986|consen 197 LGLSGGAGKGSE--NQ--------SA--SNRFLLPAQECE---------------------FKLTNLLEELQPDP----- 238 (745)
T ss_pred hcCCcccccCCc--cc--------cc--chhhhccHHHHH---------------------HHHHHHHHHhcCCC-----
Confidence 988883322211 10 11 357899988887 33433333333332
Q ss_pred EEEccCCCCCCCCCCCCcceeec--------------ccceEEEEcchhhhhhhcCCCCCCCC-----------------
Q psy13068 309 EYTIPVSQCFPKYPLRSLPVFLP--------------FLIQFVFFLAITHLINQVGSPNLPPL----------------- 357 (950)
Q Consensus 309 Ey~~p~~~~~p~~p~~~~pv~l~--------------~~~~fviD~s~~~lk~~~~l~~Lp~~----------------- 357 (950)
||+.+ ++||+|+|+++|+ +|||.++.++++.++++++.++|.++
T Consensus 239 ---wpV~~--g~Rp~RcTG~Al~iA~~Ll~~c~p~~g~rIv~f~gGPcT~GpG~vv~~el~~piRshhdi~~d~a~y~kK 313 (745)
T KOG1986|consen 239 ---WPVPP--GHRPLRCTGVALSIASGLLEGCFPNTGARIVLFAGGPCTRGPGTVVSRELKEPIRSHHDIEKDNAPYYKK 313 (745)
T ss_pred ---CCCCC--CCCcccchhHHHHHHHHHhcccCCCCcceEEEeccCCCCcCCceecchhhcCCCcCcccccCcchHHHHH
Confidence 66654 7899999999886 99999999999999987777777653
Q ss_pred -----------------CeeeeEeeccccceEEeecccccCcccceeeeccccCCCCchhhhhhhhccCCcCCCCCcc-e
Q psy13068 358 -----------------QYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFT-T 419 (950)
Q Consensus 358 -----------------~~vglit~~~~~s~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 419 (950)
.+.=|++..||+ +|.+|+...+.+++++|++++|+.+.|++.++++++++.-+.+.|+|+ +
T Consensus 314 a~KfY~~La~r~~~~ghvlDifa~~lDQv-Gi~EMk~l~~~TGG~lvl~dsF~~s~Fk~sfqR~f~~d~~~~l~~~fn~~ 392 (745)
T KOG1986|consen 314 AIKFYEKLAERLANQGHVLDIFAAALDQV-GILEMKPLVESTGGVLVLGDSFNTSIFKQSFQRIFTRDGEGDLKMGFNGT 392 (745)
T ss_pred HHHHHHHHHHHHHhCCceEeeeeeecccc-chHHHHHHhhcCCcEEEEecccchHHHHHHHHHHhccccccchhhhcCce
Confidence 233445777799 999999999999999999999999999999999999999999999999 9
Q ss_pred EEEeee-------ccceeeeecccccceecccccccc----cccCCcccccccccCCCchHHHHHhhhccCCCCC-----
Q psy13068 420 IEYTIP-------LLYSITYITENDNVIRRNEIHIKP----RICGLQEENIEEKFDDSSQEEYFEAEDQEGQGDS----- 483 (950)
Q Consensus 420 ~e~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~p----- 483 (950)
+|++++ +||+|++++.|+..|+++|||++. +.|++++ ..++.-+||++++++.+.+
T Consensus 393 leV~tSkdlkI~g~IGp~~Sl~~k~~~vsdt~ig~g~t~~wkm~~ls~--------~t~~s~~fei~~~~~~~~~~~~~i 464 (745)
T KOG1986|consen 393 LEVKTSKDLKIQGVIGPCVSLNKKGPNVSDTEIGEGNTSAWKMCGLSP--------STTLSLFFEISNQHNIPQSGQGYI 464 (745)
T ss_pred EEEEecCCcEEEecccccccccCCCCccccceeccccccceeeeccCC--------CceEEEEEEeccccCCCCCCeeEE
Confidence 999997 899999999999999999999986 8888888 5566667777776663322
Q ss_pred -------------------------------------chhhHHHhhhhcccccccCCchhhhHHHhhhhHHHHHhhcCCC
Q psy13068 484 -------------------------------------QEDEEMEEQRIEDEEDQEDGNEEIEDERETKMEEECQKFGHYN 526 (950)
Q Consensus 484 -------------------------------------q~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~ 526 (950)
|++||+.|+|++....++++++|+.||+|++++++|||||+|.
T Consensus 465 QFiT~Yq~s~g~~riRVtT~~r~~~d~~~~~i~~~FDqEaaAV~mAR~~~~kae~e~~~d~~rwlDr~Lirlc~kFg~y~ 544 (745)
T KOG1986|consen 465 QFITQYQHSSGQKRIRVTTLARPWADSGSPEISQSFDQEAAAVLMARLALLKAETEDGPDVLRWLDRNLIRLCQKFGDYR 544 (745)
T ss_pred EEEEEEEcCCCcEEEEEEEeehhhccccchHhhhccchHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHhccC
Confidence 2288999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccccccccccccccccccccccCCCCcchHHHHHHHhhCCCCCccceeeeccCCCCCccccccccchHHH
Q psy13068 527 KDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRTLLIHLPHYSRFQFLQVFNNSPDETSYYRHVLMREDL 606 (950)
Q Consensus 527 ~~~p~s~~lp~~~~~~~~~~~~l~rs~fL~~l~e~~~~~~~i~~lL~~L~~~~~~~~lqvf~~s~~~~~~~r~~G~~~Al 606 (950)
||||+||+|+.+|++|||||||||||+| |||||||||++.++|++.+++.+
T Consensus 545 k~dPssf~l~~~fsl~PQfmfhLRRS~f-----------------------------LqvfNnSPDEt~~yrhll~~e~v 595 (745)
T KOG1986|consen 545 KDDPSSFRLSPNFSLYPQFMFHLRRSPF-----------------------------LQVFNNSPDETAYYRHLLNREDV 595 (745)
T ss_pred CCCchhhcCChhhhhhHHHHHhhccchh-----------------------------hhccCCCcchHHHHHHHHhhccc
Confidence 9999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHhhcccccccccCCCCceEeccccccCCceeecccchhhhhhccCCCccccccccccccchhhhhhHHHHHHHHHH
Q psy13068 607 SQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEEPIRSHNDIHKGNNKYQKMATKHYEGLALR 686 (950)
Q Consensus 607 ~~A~~ll~p~~~~~~f~gGp~~v~l~s~s~GPG~i~~~d~~~~~~~~~~~~~irs~~d~~k~~~~~~~pa~~FYk~LA~~ 686 (950)
..++.|+||++.+|+|.|+|.||+||+.|+.|++|++.|+||+|+||||+. |.+|+... .+..|...++++|-+.
T Consensus 596 ~~sliMIqP~L~sySf~g~~epvlLD~~Si~~D~iLLlDt~f~i~i~hG~t-IaqWR~~g----y~~~pe~~~f~~LL~a 670 (745)
T KOG1986|consen 596 DNSLIMIQPTLLSYSFNGPPEPVLLDVASILADRILLLDTYFTIVIFHGST-IAQWRKAG----YHEQPEYENFKELLEA 670 (745)
T ss_pred hhhhheecceeeeeecCCCCceeEecccccCCceEEEeecceEEEEECCch-HHHHHhcc----cccChhhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999997 78876421 2235666666776544
Q ss_pred H
Q psy13068 687 A 687 (950)
Q Consensus 687 ~ 687 (950)
+
T Consensus 671 p 671 (745)
T KOG1986|consen 671 P 671 (745)
T ss_pred H
Confidence 4
No 8
>PTZ00395 Sec24-related protein; Provisional
Probab=100.00 E-value=3.1e-82 Score=759.28 Aligned_cols=547 Identities=17% Similarity=0.211 Sum_probs=439.8
Q ss_pred ccCCCeeeeeccccCCCHHHHhhcccceEEEeccCCCCC---CCCCCC-----------CcccccccccccceeeccceE
Q psy13068 202 NEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKP---DLPPLQ-----------YEPLLCMRNQCRAILNPLCQV 267 (950)
Q Consensus 202 ~e~~~~iR~t~~~~P~t~~~a~k~~~Plg~~~~Pl~~~~---~~p~~~-----------~~p~rC~~~~C~aylNP~~~~ 267 (950)
..++..||.|++.+|.+....+.+.+|||++++||+... ++|.+. ++|+||.+ |.+|+|+.+.+
T Consensus 649 n~dP~~~r~tmY~iP~~~~~~~~~~iP~gi~v~Pfa~~~~~e~~~~~~~~~~~~d~~~~~~~~rc~~--c~~y~~~~~~~ 726 (1560)
T PTZ00395 649 KADPRFLKSTLYQIPLFSETLKLSQIPFGIIVNPFACLNEGEGIDKIDMKDIINDKEENIEILRCPK--CLGYLHATILE 726 (1560)
T ss_pred CCChhhhhhhhhcCcchHHHHHhcCCCceeecchhhhcCCCCCCcccchhhcccchhhccceeecch--hHhhhcchhee
Confidence 336899999999999999999999999999999999743 344332 47999999 99999999999
Q ss_pred eCCCCeeEecCCCCCCCCchh-----hh---hc----cccCCCCc-ccC-CCceEEEEccCCC-----------------
Q psy13068 268 DYKSKLWVCNFCFQRNAFPPQ-----YA---AI----TEQHQPAE-LHP-QFTTIEYTIPVSQ----------------- 316 (950)
Q Consensus 268 d~~g~~w~C~~C~~~N~~p~~-----y~---~i----~d~~~~~E-l~~-~~~tvEy~~p~~~----------------- 316 (950)
+.. +..+|++|...++.-.. |+ .+ .+.++... +.| -.|+|++++|.-+
T Consensus 727 ~~~-~~~~c~~c~~~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1560)
T PTZ00395 727 DIS-SSVQCVFCDTDFLINENVLFDIFQYNEKIGHKESDHNEHGNSLSPLLKGSVDIIIPPIYYHNVNKFKLTYTYLNKN 805 (1560)
T ss_pred ccc-ceEEEEecCCcchhhHHHHHHHHHHhhhhccccccccccccccchhhcCceeEEccchhhccCCccceeeehhhcc
Confidence 976 99999999999887443 21 11 11111111 111 1466666665410
Q ss_pred --------------------------------------------------------------------------------
Q psy13068 317 -------------------------------------------------------------------------------- 316 (950)
Q Consensus 317 -------------------------------------------------------------------------------- 316 (950)
T Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 885 (1560)
T PTZ00395 806 INQTAFMITNKIMSFTKHISNSLVANDSKGGNKATSASAFGDSGDANFLAGGGYTNYGGAGGYNTYDNQSGYNNHDVVNN 885 (1560)
T ss_pred hhhhhhhhhhhhhhhhhhhcchheecccccccccchhhhccccccccccccccccccccccccccccccccccccccccc
Confidence
Q ss_pred -----------------------------------------------------------CCCCCCCCCcceeecccceEE
Q psy13068 317 -----------------------------------------------------------CFPKYPLRSLPVFLPFLIQFV 337 (950)
Q Consensus 317 -----------------------------------------------------------~~p~~p~~~~pv~l~~~~~fv 337 (950)
|+-|.|. .|+|+ |+
T Consensus 886 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--PP~Yv-----FL 958 (1560)
T PTZ00395 886 RGGSGAGNHLYGKDHDVQNFDNVMDNANFTIHDMKNLICEKNGEPDSAKIRRNSFLAKYPQVKNML--PPYFV-----FV 958 (1560)
T ss_pred ccccCcCcccccCcccccchhhhccCCceeeecchhhhhcccCCchhhhhhccchhhccccccCCC--CCEEE-----EE
Confidence 0001111 28888 99
Q ss_pred EEcchhhhhh----------hcCCCCCC-CCCeeeeEeeccccceEEeecccccCcccceeeeccccCCCCchhhhhhhh
Q psy13068 338 FFLAITHLIN----------QVGSPNLP-PLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITE 406 (950)
Q Consensus 338 iD~s~~~lk~----------~~~l~~Lp-~~~~vglit~~~~~s~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 406 (950)
||||..++++ +.+|+.|| +.++||||||| +.||||++..+.- .++++ .+
T Consensus 959 IDVS~~AVkSGLl~tacesIK~sLDsL~dpRTRVGIITFD---SsLHFYNLks~l~-------------~~~~~-~~--- 1018 (1560)
T PTZ00395 959 VECSYNAIYNNITYTILEGIRYAVQNVKCPQTKIAIITFN---SSIYFYHCKGGKG-------------VSGEE-GD--- 1018 (1560)
T ss_pred EECCHHHHhhChHHHHHHHHHHHHhcCCCCCcEEEEEEec---CcEEEEecCcccc-------------ccccc-cc---
Confidence 9999988876 56778887 44999999999 9999999963210 00000 00
Q ss_pred ccCCcCCCCCcceEEEeeeccceeeeecccccceecccccccccccCCcccccccccCCCchHHHHHhhhccCCCCCchh
Q psy13068 407 QHQPAELHPQFTTIEYTIPLLYSITYITENDNVIRRNEIHIKPRICGLQEENIEEKFDDSSQEEYFEAEDQEGQGDSQED 486 (950)
Q Consensus 407 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~pq~~ 486 (950)
+. .+...||
T Consensus 1019 ----------------------------------------------------------~~-----------~~l~qPQ-- 1027 (1560)
T PTZ00395 1019 ----------------------------------------------------------GG-----------GGSGNHQ-- 1027 (1560)
T ss_pred ----------------------------------------------------------cc-----------ccCCCce--
Confidence 00 0122345
Q ss_pred hHHHhhhhcccccccCCchhhhHHHhhhhHHHHHhhcCCCCCCCCCCCCCccccccccccccccccccccccCCCCcchH
Q psy13068 487 EEMEEQRIEDEEDQEDGNEEIEDERETKMEEECQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETS 566 (950)
Q Consensus 487 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~s~~lp~~~~~~~~~~~~l~rs~fL~~l~e~~~~~~ 566 (950)
|.++.|.+| | .+|+|. ..+|+++.||++.
T Consensus 1028 -------MLVVSDLDD---------------------------P-FLPlP~--------------ddLLVnL~ESRev-- 1056 (1560)
T PTZ00395 1028 -------VIVMSDVDD---------------------------P-FLPLPL--------------EDLFFGCVEEIDK-- 1056 (1560)
T ss_pred -------EEeecCCcc---------------------------C-cCCCCc--------------cCeeechHHHHHH--
Confidence 556667766 1 134442 3567777777766
Q ss_pred HHHHHHhhCCCCCccceeeeccCCCCCccccccccchHHHHHHHHhhcccccccccCCCCceEecccc-ccCCceeeccc
Q psy13068 567 YYRTLLIHLPHYSRFQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTS-SIKPDCILLMD 645 (950)
Q Consensus 567 ~i~~lL~~L~~~~~~~~lqvf~~s~~~~~~~r~~G~~~Al~~A~~ll~p~~~~~~f~gGp~~v~l~s~-s~GPG~i~~~d 645 (950)
|+.||++||. +|. +...+..|+| +||++|+.+|++++ .||++.+++.+. ++|||+|+.++
T Consensus 1057 -Ie~LLDkLPe--------mFt---~t~~~esCLG--SALqAA~~aLk~~G-----GGGKIiVF~SSLPniGpGaLK~Re 1117 (1560)
T PTZ00395 1057 -INTLIDTIKS--------VST---TMQSYGSCGN--SALKIAMDMLKERN-----GLGSICMFYTTTPNCGIGAIKELK 1117 (1560)
T ss_pred -HHHHHHHHHH--------Hhh---ccCCCcccHH--HHHHHHHHHHHhcC-----CCceEEEEEcCCCCCCCCcccccc
Confidence 9999999987 564 3456789999 99999999999531 148885555554 99999999432
Q ss_pred chhhhhhccCCCccccccccccccchhhhhhHHHHHHHHHHHhhcccEEEEEeccCCCCC--chhhhhhhhccCCCcEEE
Q psy13068 646 TFFQLLIFHGEEPIRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTG--LLEMKLCCNATGKPSHVL 723 (950)
Q Consensus 646 ~~~~~~~~~~~~~irs~~d~~k~~~~~~~pa~~FYk~LA~~~~~~gIsVDLF~~s~~~vd--latl~~L~~~TGG~~~v~ 723 (950)
+ + .| +..++.++++|||+||.+|+++||+||||+++.+|+| ||+|+.|+++||| ++|
T Consensus 1118 ~-----------------~-~K-Ek~Ll~pqd~FYK~LA~ECsk~qISVDLFLfSsqYvDVDVATLg~Lsr~TGG--qly 1176 (1560)
T PTZ00395 1118 K-----------------D-LQ-ENFLEVKQKIFYDSLLLDLYAFNISVDIFIISSNNVRVCVPSLQYVAQNTGG--KIL 1176 (1560)
T ss_pred c-----------------c-cc-cccccccchHHHHHHHHHHHhcCCceEEEEccCcccccccccccchhcccce--eEE
Confidence 1 0 12 3356788999999999999999999999999999986 7999999999999 999
Q ss_pred EcCCCCC-----------------------------CCCCeeEeeecCC---------C----------------cCCCC
Q psy13068 724 IAIEFAQ-----------------------------PSPMLKAQKRLGS---------T----------------TAAHG 749 (950)
Q Consensus 724 ~y~~F~~-----------------------------~S~GlkV~~~~Gs---------T----------------t~~~d 749 (950)
|||+|+. ||+||+|++|||. + .++||
T Consensus 1177 yYPnFna~rD~~KL~~DL~r~LTre~iGyEAVMRVRCS~GLrVs~fyG~GnnF~s~rStDLLaLP~Id~DqSfaVeLk~D 1256 (1560)
T PTZ00395 1177 FVENFLWQKDYKEIYMNIMDTLTSEDIAYCCELKLRYSHHMSVKKLFCCNNNFNSIISVDTIKIPKIRHDQTFAFLLNYS 1256 (1560)
T ss_pred EeCCCcccccHHHHHHHHHHHhhccceeeEEEEEEECCCCeEEEEEeccCCccccccccccccccccCCCceEEEEEEec
Confidence 9999966 9999999999941 1 16888
Q ss_pred CCCCCCCceEEEEEEeeecCCCcEEEEEEeeeecccccCCCHHHHHhccCHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Q psy13068 750 APIPQGGRGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVMRWADR 829 (950)
Q Consensus 750 e~L~~~~~~yIQ~AlLYT~~~GeRRIRV~Tl~l~~~pvts~l~~v~~s~D~eAi~~llaR~av~~~~~~~l~d~r~~L~~ 829 (950)
++|.+...+|||+|||||+++|||||||||+++ ||++++.+||+++|++|++++|+|+|+.+++++ .++|+.|.+
T Consensus 1257 EkL~~~~~AYFQaALLYTSssGERRIRVHTLAL---PVTSsLseVFrsADqdAIvslLAK~AV~~aLss--sdARe~L~d 1331 (1560)
T PTZ00395 1257 DISESKKQIYFQCACIYTNLWGDRFVRLHTTHM---NLTSSLSTVFRYTDAEALMNILIKQLCTNILHN--DNYSKIIID 1331 (1560)
T ss_pred cccCCCCcEEEEEEEeeccCCCcEEEEEEeeee---cccCCHHHHHHhhcHHHHHHHHHHHHHHHhccc--HHHHHHHHH
Confidence 999888899999999999999999999999999 999999999999999999999999999999988 499999999
Q ss_pred HHHHHHHHHhcccCC--CCCccccCcccccHHHHHHHHHhcccccCCCCChhHHHHHHHHHcCCCHHhHHhccccceEEe
Q psy13068 830 TLIRLCQKFGHYNKD--DPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSY 907 (950)
Q Consensus 830 ~lv~il~~Yr~~~~~--~~~qliLPesLklLP~yi~~LlKS~~Lr~~n~spDeR~~~~~~l~s~~v~~~l~~iYP~L~sl 907 (950)
+++++|++||+.|++ .++||+|||+||+||+|+++|+||.+|+ ..+++|+|+|.+++++++++..++.+|||+||++
T Consensus 1332 klVdILtaYRK~CAsssssgQLILPESLKLLPLYILSLLKS~AfR-t~I~sDeRVyaL~rL~SmPI~~Li~yLYPRLYpL 1410 (1560)
T PTZ00395 1332 NLAAILFSYRINCASSAHSGQLILPDTLKLLPLFTSSLLKHNVTK-KEILHDLKVYSLIKLLSMPIISSLLYVYPVMYVI 1410 (1560)
T ss_pred HHHHHHHHHHHHhhccCCCccccchhHHHHHHHHHHHHhcccccc-CCCCccHHHHHHHHHhCCCHHHHHhhhcCceEEc
Confidence 999999999999953 6889999999999999999999999998 4789999999999999999999999999999999
Q ss_pred c-cC-----------C---CCcccccccccccCCeEEEEECCCEEEEEEcCCCC
Q psy13068 908 G-FN-----------G---PPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEVSN 946 (950)
Q Consensus 908 h-~~-----------g---~P~~v~LS~esL~~dgIyLLD~g~~I~IwvG~~V~ 946 (950)
| +. + .|+.++||.++|.++||||||+|..||||||++|+
T Consensus 1411 HdL~~e~e~d~~d~d~~ivLPp~LrLS~ErLesdGIYLLDNGe~IyLWVG~~V~ 1464 (1560)
T PTZ00395 1411 HIKGKTNEIDSMDVDDDLFIPKTIPSSAEKIYSNGIYLLDACTHFYLYFGFHSD 1464 (1560)
T ss_pred ccccccccCCccCCCCccccCCcccchHHHhcCCcEEEEECCCEEEEEECCCCC
Confidence 9 41 1 28999999999999999999999999999999997
No 9
>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion]
Probab=100.00 E-value=8.4e-71 Score=614.96 Aligned_cols=547 Identities=31% Similarity=0.461 Sum_probs=446.6
Q ss_pred cCCCCceEEeecccCCchhhhhhcccCceeeeecCCCCCCCCCCcccceeeccccccceecccccccccccccCceeccc
Q psy13068 11 NEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQGCVSSTLEALWLKSI 90 (950)
Q Consensus 11 ~~~~~~~r~~wn~~p~s~~~~~~~~~p~g~~~~p~~~~~~~p~~~~~p~~c~~~~c~~~~np~~~~~~~~~~~~~w~c~~ 90 (950)
.|++|||||||||||+||.|++|+++|+||||+||+|.+.+++..|+||.|+. -|+|||||+|- +|.+++-|.|.|
T Consensus 6 iee~dgir~twnvfpat~~da~~~~iPia~lY~Pl~e~~~~~v~~yepv~C~~-pC~avlnpyC~---id~r~~~W~Cpf 81 (755)
T COG5047 6 IEENDGIRLTWNVFPATRGDATRTVIPIACLYTPLHEDDALTVNYYEPVKCTA-PCKAVLNPYCH---IDERNQSWICPF 81 (755)
T ss_pred hccccceEEEEecccCCccccccccccHHHhccccccccccCcccCCCceecc-cchhhcCccee---eccCCceEecce
Confidence 89999999999999999999999999999999999999999999999999995 39999999999 999999999999
Q ss_pred cccccC------------CCcccccccccceeeeccccccCcccccCcccCCCCCccccccccccccccccchhhhhhhh
Q psy13068 91 FFQAED------------GIRDRSFGFHNSSVNIVRSVGHGVINHFGFRVGDESKTSRSFRDGILHDNNIYNFTPLFKEC 158 (950)
Q Consensus 91 c~~~n~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (950)
|+|||. ..-|.-.+-++.+|.+.|....+++ |.+++|.|
T Consensus 82 Cnqrn~lp~qy~~iS~~~LplellpqssTiey~lskp~~~ppv-----------------------------f~fvvD~~ 132 (755)
T COG5047 82 CNQRNTLPPQYRDISNANLPLELLPQSSTIEYTLSKPVILPPV-----------------------------FFFVVDAC 132 (755)
T ss_pred ecCCCCCChhhcCCCcccCCccccCCCceEEEEccCCccCCce-----------------------------EEEEEEee
Confidence 999994 2222333678889999998777666 88999999
Q ss_pred cCCCCCCccccCCcccccccceeeeeccccc----ccchhhHHHHhhcc-CCCeeeeeccccCCCHHHHhhcccceEEEe
Q psy13068 159 LHPPNGRVLEWNGTRVAHSTLTVQLSLETLK----ISMTTYEEFFYQNE-ERDGIRCTWNVWPSSKLEASRLVMPVGCLY 233 (950)
Q Consensus 159 ~~~~~~~~~~~~~~r~~~st~~~~~~~~~~~----~~~~~~~~~~~~~e-~~~~iR~t~~~~P~t~~~a~k~~~Plg~~~ 233 (950)
.+++++.+||.. +.++|+.+| ||++||+-+++++| +-+-+|.+..+-+..+-.+.+++..+|.-
T Consensus 133 ~D~e~l~~Lkds----------livslsllppeaLvglItygt~i~v~el~ae~~~r~~VF~g~~eyt~~~L~~ll~~~- 201 (755)
T COG5047 133 CDEEELTALKDS----------LIVSLSLLPPEALVGLITYGTSIQVHELNAENHRRSYVFSGNKEYTKENLQELLALS- 201 (755)
T ss_pred cCHHHHHHHHHH----------HHHHHhcCCccceeeEEEecceeEEEeccccccCcceeecchHHHHHHHHHHHhccc-
Confidence 999999999999 999999999 99999999999999 88999999999999999888888777765
Q ss_pred ccCCCCC---CCCCCCCcccccccccccceeeccceEeCCCCeeEecCCCCCCCCchhhhhccccCCCCcccCCCceEEE
Q psy13068 234 QPLKEKP---DLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEY 310 (950)
Q Consensus 234 ~Pl~~~~---~~p~~~~~p~rC~~~~C~aylNP~~~~d~~g~~w~C~~C~~~N~~p~~y~~i~d~~~~~El~~~~~tvEy 310 (950)
.|.+.-. .++.... -+ -..|+-|.-+|.. .--++.+.. +-++
T Consensus 202 ~~~~~~~~es~is~~~~----~~---~~rFl~p~q~ce~------------------~L~n~le~L---~pd~------- 246 (755)
T COG5047 202 KPTKSGGFESKISGIGQ----FA---SSRFLLPTQQCEF------------------KLLNILEQL---QPDP------- 246 (755)
T ss_pred CCCCcchhhhhcccccc----cc---hhhhhccHHHHHH------------------HHHHHHHHh---CCCC-------
Confidence 6655421 1222111 00 1335555444430 000122222 2222
Q ss_pred EccCCCCCCCCCCCCcceeec--------------ccceEEEEcchhhhhhhcCCCCCCCC-------------------
Q psy13068 311 TIPVSQCFPKYPLRSLPVFLP--------------FLIQFVFFLAITHLINQVGSPNLPPL------------------- 357 (950)
Q Consensus 311 ~~p~~~~~p~~p~~~~pv~l~--------------~~~~fviD~s~~~lk~~~~l~~Lp~~------------------- 357 (950)
||+. ..+||+|.|+.+|. +||+++..++++.+++.++..++++.
T Consensus 247 -~~v~--~~~Rp~RCTGsAl~ias~Ll~~~~p~~~~~i~lF~~GPcTvGpG~Vvs~elkEpmRshH~ie~d~aqh~kka~ 323 (755)
T COG5047 247 -WPVP--AGKRPLRCTGSALNIASSLLEQCFPNAGCHIVLFAGGPCTVGPGTVVSTELKEPMRSHHDIESDSAQHSKKAT 323 (755)
T ss_pred -ccCC--CCCCCccccchhHHHHHHHHHhhccCcceeEEEEcCCCccccCceeeehhhcccccccccccccchhhccchH
Confidence 3333 36788998887764 89999999999888776555555542
Q ss_pred -Ce---------eeeE------eeccccceEEeecccccCcccceeeeccccCCCCchhhhhhhhccCCcCCCCCcc-eE
Q psy13068 358 -QY---------EPLL------CMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFT-TI 420 (950)
Q Consensus 358 -~~---------vgli------t~~~~~s~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 420 (950)
.| .|.+ |+| |+ ++.+|+-..+.++++.|+.++|+.+-|++.+++++..+.-+.++|+|| .+
T Consensus 324 KFY~~laeR~a~~gh~~Difagcld-qI-GI~eM~~L~~sTgg~lvlsdsF~t~ifkqSfqrif~~d~~g~l~~gfNa~m 401 (755)
T COG5047 324 KFYKGLAERVANQGHALDIFAGCLD-QI-GIMEMEPLTTSTGGALVLSDSFTTSIFKQSFQRIFNRDSEGYLKMGFNANM 401 (755)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHH-hh-hhhcchhhccCCcceEEEeccccHHHHHHHHHHHhCcCcccchhhhhccce
Confidence 12 2222 666 77 899999999999999999999999999999999999999999999999 99
Q ss_pred EEeee-------ccceeeeecccccceeccccccc----ccccCCcccccccccCCCchHHHHHhhhccCCC--------
Q psy13068 421 EYTIP-------LLYSITYITENDNVIRRNEIHIK----PRICGLQEENIEEKFDDSSQEEYFEAEDQEGQG-------- 481 (950)
Q Consensus 421 e~~~~-------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~-------- 481 (950)
|++++ +||--.+++-+...++++|||++ |+.++++|.+ +.+-+||+...++-+
T Consensus 402 ~V~TsKnl~~~g~ig~a~~~~k~~~ni~~~eigi~~t~swkm~slsPk~--------nyal~fei~~~~~~~~~~~~~~a 473 (755)
T COG5047 402 EVKTSKNLKIKGLIGHAVSVKKKANNISDSEIGIGATNSWKMASLSPKS--------NYALYFEIALGAASGSAQRPAEA 473 (755)
T ss_pred eEeeccCceeeeeecceeeecccccccccccccccccccccccccCCCc--------ceEEEEEeccccCCCccCCcccc
Confidence 99998 66766777778889999999998 5788887752 111112221111111
Q ss_pred -------------------------------------CCchhhHHHhhhhcccccccCCchhhhHHHhhhhHHHHHhhcC
Q psy13068 482 -------------------------------------DSQEDEEMEEQRIEDEEDQEDGNEEIEDERETKMEEECQKFGH 524 (950)
Q Consensus 482 -------------------------------------~pq~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~g~ 524 (950)
-.|+++++.|.|+++...+-|+..|+.||.|+.++++||+|.+
T Consensus 474 ~iQfiT~yQhss~t~riRVtTvar~f~~~~~p~i~~SFdqEaaaV~~aR~a~~K~~~ed~~Dv~rw~dr~lirlcq~fa~ 553 (755)
T COG5047 474 YIQFITTYQHSSGTYRIRVTTVARMFTDGGLPKINRSFDQEAAAVFMARIAAFKAETEDIIDVFRWIDRNLIRLCQKFAD 553 (755)
T ss_pred hhhhhhhhhccCCcEEEEEeehhhhhccCCChhhhhcchhhHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHh
Confidence 1244899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccccccccccccccccccccccCCCCcchHHHHHHHhhCCCCCccceeeeccCCCCCccccccccchH
Q psy13068 525 YNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRTLLIHLPHYSRFQFLQVFNNSPDETSYYRHVLMRE 604 (950)
Q Consensus 525 ~~~~~p~s~~lp~~~~~~~~~~~~l~rs~fL~~l~e~~~~~~~i~~lL~~L~~~~~~~~lqvf~~s~~~~~~~r~~G~~~ 604 (950)
|.||||+||+|+.+|.+|||||||||||.| |||||||||++..+|++...+
T Consensus 554 y~k~dpssfrl~~~f~lypqf~y~lrRSpf-----------------------------L~vfNnSPDEt~fyrh~l~~~ 604 (755)
T COG5047 554 YRKDDPSSFRLDPNFTLYPQFMYHLRRSPF-----------------------------LSVFNNSPDETAFYRHMLNNA 604 (755)
T ss_pred cCCCCchhhcCCcchhhhhHHHhhhhccce-----------------------------eeccCCCcchHHHHHHHHhcc
Confidence 999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHhhcccccccccCCCCceEeccccccCCceeecccchhhhhhccCCCccccccccccccchh-hhhhHHHHHHH
Q psy13068 605 DLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEEPIRSHNDIHKGNNKY-QKMATKHYEGL 683 (950)
Q Consensus 605 Al~~A~~ll~p~~~~~~f~gGp~~v~l~s~s~GPG~i~~~d~~~~~~~~~~~~~irs~~d~~k~~~~~-~~pa~~FYk~L 683 (950)
.+..++.|+||++.+|+|.+|..||+||+.++.|+.|++.|+||+|+||||+- |.+|++- -| -+|...+.|.|
T Consensus 605 dv~~sLimiqPtL~Sys~~~~~~pVlLDs~svkpdviLLlDtff~Ili~hG~~-iaqwr~a-----gyq~qpey~~lK~L 678 (755)
T COG5047 605 DVNDSLIMIQPTLQSYSFEKGGVPVLLDSVSVKPDVILLLDTFFHILIFHGSY-IAQWRNA-----GYQEQPEYLNLKEL 678 (755)
T ss_pred cccchhhhhcchheeeeccCCCceEEEeccccCCCeEEEeeceeEEEEECChH-HHHHHhh-----hhhcCchhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999996 6776531 11 23445555655
Q ss_pred H
Q psy13068 684 A 684 (950)
Q Consensus 684 A 684 (950)
-
T Consensus 679 l 679 (755)
T COG5047 679 L 679 (755)
T ss_pred h
Confidence 3
No 10
>PLN00162 transport protein sec23; Provisional
Probab=100.00 E-value=9.9e-61 Score=580.65 Aligned_cols=539 Identities=29% Similarity=0.472 Sum_probs=409.6
Q ss_pred hccCCCCceEEeecccCCchhhhhhcccCceeeeecCCCCCCCCCCcccceeeccccccceecccccccccccccCceec
Q psy13068 9 YQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQGCVSSTLEALWLK 88 (950)
Q Consensus 9 ~~~~~~~~~r~~wn~~p~s~~~~~~~~~p~g~~~~p~~~~~~~p~~~~~p~~c~~~~c~~~~np~~~~~~~~~~~~~w~c 88 (950)
.+.|+.||||+|||+||+|+.+++++++|+||+||||++.+++|+++|+|+||+| |||||||||+ ||+++|.|+|
T Consensus 4 ~~~e~~~gvR~s~n~~P~t~~~~~~~~iPlg~v~tPl~~~~~vp~v~~~pvRC~~--CraylNPf~~---~d~~~~~W~C 78 (761)
T PLN00162 4 AELEAIDGVRMSWNVWPSSKIEASKCVIPLAALYTPLKPLPELPVLPYDPLRCRT--CRAVLNPYCR---VDFQAKIWIC 78 (761)
T ss_pred hhhcccCceEeeeecCCCCHHHHhcCCCCeEEEEecCCcCCCCCcCCCCCCccCC--CcCEECCceE---EecCCCEEEc
Confidence 3778999999999999999999999999999999999999999999999999995 9999999999 9999999999
Q ss_pred cccccccCCCccc------------ccccccceeeeccccccCcccccCcccCCCCCccccccccccccccccchhhhhh
Q psy13068 89 SIFFQAEDGIRDR------------SFGFHNSSVNIVRSVGHGVINHFGFRVGDESKTSRSFRDGILHDNNIYNFTPLFK 156 (950)
Q Consensus 89 ~~c~~~n~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (950)
|||+++|+...+- ...+.+.||.+.+. ...++.+| .|.+|||
T Consensus 79 ~~C~~~N~~P~~Y~~~~~~~~p~EL~p~~~TvEY~~p~~-------------~~~~~~pp-------------~fvFvID 132 (761)
T PLN00162 79 PFCFQRNHFPPHYSSISETNLPAELFPQYTTVEYTLPPG-------------SGGAPSPP-------------VFVFVVD 132 (761)
T ss_pred cCCCCCCCCchHhcccCccCCChhhcCCceeEEEECCCC-------------CCCCCCCc-------------EEEEEEe
Confidence 9999999866541 11233444444320 00111122 4899999
Q ss_pred hhcCCCCCCccccCCcccccccceeeeeccccc----ccchhhHHHHhhcc-CCCeeeeeccccCCCHHHHhhcccceEE
Q psy13068 157 ECLHPPNGRVLEWNGTRVAHSTLTVQLSLETLK----ISMTTYEEFFYQNE-ERDGIRCTWNVWPSSKLEASRLVMPVGC 231 (950)
Q Consensus 157 ~~~~~~~~~~~~~~~~r~~~st~~~~~~~~~~~----~~~~~~~~~~~~~e-~~~~iR~t~~~~P~t~~~a~k~~~Plg~ 231 (950)
+|+.+.+...++.+ |+.+|+.|| ||++||+.+++.++ ...++..++.+.++++...++++.++++
T Consensus 133 ~s~~~~~l~~lk~s----------l~~~L~~LP~~a~VGlITF~s~V~~~~L~~~~~~~~~Vf~g~k~~t~~~l~~~l~l 202 (761)
T PLN00162 133 TCMIEEELGALKSA----------LLQAIALLPENALVGLITFGTHVHVHELGFSECSKSYVFRGNKEVSKDQILEQLGL 202 (761)
T ss_pred cchhHHHHHHHHHH----------HHHHHHhCCCCCEEEEEEECCEEEEEEcCCCCCcceEEecCCccCCHHHHHHHhcc
Confidence 99999988888766 888888888 99999999999999 5566788888888888888888888876
Q ss_pred EeccCCCCCCCCCCC----CcccccccccccceeeccceEeCCCCeeEecCCCCCCCCchhhhhccccCCCCcccCCCce
Q psy13068 232 LYQPLKEKPDLPPLQ----YEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTT 307 (950)
Q Consensus 232 ~~~Pl~~~~~~p~~~----~~p~rC~~~~C~aylNP~~~~d~~g~~w~C~~C~~~N~~p~~y~~i~d~~~~~El~~~~~t 307 (950)
--.+-......|... ..|.. +.||-|...+. ..+.+......-.+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~p~~------~~fLvpl~e~~---------------------~~i~~lLe~L~~~~---- 251 (761)
T PLN00162 203 GGKKRRPAGGGIAGARDGLSSSGV------NRFLLPASECE---------------------FTLNSALEELQKDP---- 251 (761)
T ss_pred ccccccccccccccccccccCCCc------cceeEEHHHHH---------------------HHHHHHHHhhhccc----
Confidence 333211000000000 01111 35666665443 22222111111011
Q ss_pred EEEEccCCCCCCCCCCCCcceeec--------------ccceEEEEcchhhhhhhcCCCCCCC-----------C-----
Q psy13068 308 IEYTIPVSQCFPKYPLRSLPVFLP--------------FLIQFVFFLAITHLINQVGSPNLPP-----------L----- 357 (950)
Q Consensus 308 vEy~~p~~~~~p~~p~~~~pv~l~--------------~~~~fviD~s~~~lk~~~~l~~Lp~-----------~----- 357 (950)
||... .++|.|+++++|. +|||.++.+.++.++++....++.+ .
T Consensus 252 ----~~~~~--~~rp~r~tG~AL~vA~~lL~~~~~~~gGrI~~F~sgppT~GpG~v~~r~~~~~~rsh~di~k~~~~~~~ 325 (761)
T PLN00162 252 ----WPVPP--GHRPARCTGAALSVAAGLLGACVPGTGARIMAFVGGPCTEGPGAIVSKDLSEPIRSHKDLDKDAAPYYK 325 (761)
T ss_pred ----cccCC--CCCCCccHHHHHHHHHHHHhhccCCCceEEEEEeCCCCCCCCceeecccccccccCccccccchhhhcc
Confidence 33221 3556666666554 7999999999988777332222111 0
Q ss_pred ------------------CeeeeEeeccccceEEeecccccCcccceeeeccccCCCCchhhhhhhhccCCcCCCCCcc-
Q psy13068 358 ------------------QYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFT- 418 (950)
Q Consensus 358 ------------------~~vglit~~~~~s~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 418 (950)
+..=|++-.|++ .+..+....+.++|.+++.++|+.+.+++.+++.++....+.++++++
T Consensus 326 ~a~~fY~~la~~~~~~gisvDlF~~s~dqv-glaem~~l~~~TGG~v~~~~sF~~~~f~~~l~r~~~r~~~~~~~~gf~a 404 (761)
T PLN00162 326 KAVKFYEGLAKQLVAQGHVLDVFACSLDQV-GVAEMKVAVERTGGLVVLAESFGHSVFKDSLRRVFERDGEGSLGLSFNG 404 (761)
T ss_pred hHHHHHHHHHHHHHHcCceEEEEEcccccc-CHHHHhhhHhhcCcEEEEeCCcChHHHHHHHHHHhccccccccccccee
Confidence 223334555666 777888888899999999999999999999999888766667788999
Q ss_pred eEEEeee-------ccceeeeecccccceecccccccc----cccCCccccccc--------------------------
Q psy13068 419 TIEYTIP-------LLYSITYITENDNVIRRNEIHIKP----RICGLQEENIEE-------------------------- 461 (950)
Q Consensus 419 ~~e~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~-------------------------- 461 (950)
++|+.++ ++|.|.+...+...++++++|+++ +++++++..-+.
T Consensus 405 ~~~VrtS~glkv~g~~G~~~s~~~~~~~vsd~~iG~g~T~~w~l~~l~~~~t~av~f~~~~~~~~~~~~~~~~~~iQ~a~ 484 (761)
T PLN00162 405 TFEVNCSKDVKVQGAIGPCASLEKKGPSVSDTEIGEGGTTAWKLCGLDKKTSLAVFFEVANSGQSNPQPPGQQFFLQFLT 484 (761)
T ss_pred EEEEEecCCeEEeeeEcCcccccccCCccccccccCCCCceeeecCcCcCCEEEEEEEEccccccCCCCCCceEEEEEEE
Confidence 9999987 777887777787888899988863 555555421000
Q ss_pred ------cc-------------CCCchHHHHHhhhccCCCCCchhhHHHhhhhcccccccCCchhhhHHHhhhhHHHHHhh
Q psy13068 462 ------KF-------------DDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERETKMEEECQKF 522 (950)
Q Consensus 462 ------g~-------------~~~~~~~~~~~~~~~~~~~pq~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 522 (950)
|. +..+..+++. +..|+++++.|.|++...-+.++..++.||++++++++|++|
T Consensus 485 lYt~~~G~rRiRV~T~~~~~~~~~~~~~v~~-------~fDqeA~a~llaR~av~k~~~~~~~d~~r~ld~~li~~~~~f 557 (761)
T PLN00162 485 RYQHSNGQTRLRVTTVTRRWVEGSSSEELVA-------GFDQEAAAVVMARLASHKMETEEEFDATRWLDRALIRLCSKF 557 (761)
T ss_pred EEEcCCCCEEEEEEccccCccCCCCHHHHHH-------hcCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 00 0001111211 233568888888888887777778889999999999999999
Q ss_pred cCCCCCCCCCCCCCccccccccccccccccccccccCCCCcchHHHHHHHhhCCCCCccceeeeccCCCCCccccccccc
Q psy13068 523 GHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRTLLIHLPHYSRFQFLQVFNNSPDETSYYRHVLM 602 (950)
Q Consensus 523 g~~~~~~p~s~~lp~~~~~~~~~~~~l~rs~fL~~l~e~~~~~~~i~~lL~~L~~~~~~~~lqvf~~s~~~~~~~r~~G~ 602 (950)
|+|.|++|++|+||++|.++||||+|||||+| ||+||+|||++.++|+..|
T Consensus 558 ~~Yrk~~~~s~~Lp~~~~~lP~f~~~LrRS~~-----------------------------l~~~n~spDera~~r~~l~ 608 (761)
T PLN00162 558 GDYRKDDPSSFRLSPNFSLYPQFMFNLRRSQF-----------------------------VQVFNNSPDETAYFRMMLN 608 (761)
T ss_pred hhhcccCCccccCCHHHHHHHHHHHHHhhhhh-----------------------------ccCCCCCchHHHHHHHHHh
Confidence 99999999999999999999999999999999 8999999999999999999
Q ss_pred hHHHHHHHHhhcccccccccCCCCceEeccccccCCceeecccchhhhhhccCCCcccccc
Q psy13068 603 REDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEEPIRSHN 663 (950)
Q Consensus 603 ~~Al~~A~~ll~p~~~~~~f~gGp~~v~l~s~s~GPG~i~~~d~~~~~~~~~~~~~irs~~ 663 (950)
++.+..++.||+|.+++|+|.+.|.||+||+.++.|+.|.+.|+||+|+||||+. |.+|+
T Consensus 609 ~~~~~~sl~mI~P~L~sy~~~~~P~pv~Ld~~si~~d~ilLLD~~f~vvi~~G~~-ia~w~ 668 (761)
T PLN00162 609 RENVTNSLVMIQPTLISYSFNGPPEPVLLDVASIAADRILLLDSYFSVVIFHGST-IAQWR 668 (761)
T ss_pred cCCHHHHHHhhCCeEEEecCCCCCcceecchhhccCCceEEEeCCCEEEEEecCc-ccchh
Confidence 9999999999999999999999999999999999999999999999999999997 77775
No 11
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=100.00 E-value=1.3e-37 Score=337.51 Aligned_cols=243 Identities=28% Similarity=0.386 Sum_probs=193.0
Q ss_pred ceeecccceEEEEcchhh-----hhh--hcCCCCCCCCCeeeeEeeccccceEEeecccccCcccceeeeccccCCCCch
Q psy13068 327 PVFLPFLIQFVFFLAITH-----LIN--QVGSPNLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPP 399 (950)
Q Consensus 327 pv~l~~~~~fviD~s~~~-----lk~--~~~l~~Lp~~~~vglit~~~~~s~v~~~~~~~~~~~~~~v~~~~~~~~~~~~ 399 (950)
|+|+ ||||+|..+ +|+ +.+|+.||++++||||||| +.||||++....|
T Consensus 4 p~~v-----FviDvs~~~~el~~l~~sl~~~L~~lP~~a~VGlITfd---~~V~~~~L~~~~~----------------- 58 (267)
T cd01478 4 PVFL-----FVVDTCMDEEELDALKESLIMSLSLLPPNALVGLITFG---TMVQVHELGFEEC----------------- 58 (267)
T ss_pred CEEE-----EEEECccCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEC---CEEEEEEcCCCcC-----------------
Confidence 9999 999999944 455 7889999999999999999 9999999975333
Q ss_pred hhhhhhhccCCcCCCCCcceEEEeeeccceeeeecccccceecccccccccccCCcccccccccCCCchHHHHHhhhccC
Q psy13068 400 QYAAITEQHQPAELHPQFTTIEYTIPLLYSITYITENDNVIRRNEIHIKPRICGLQEENIEEKFDDSSQEEYFEAEDQEG 479 (950)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~ 479 (950)
.+++||+|.|+++.+++.++. +
T Consensus 59 -------------------------------------------------------~~~~vf~g~~~~~~~~~~~~l---~ 80 (267)
T cd01478 59 -------------------------------------------------------SKSYVFRGNKDYTAKQIQDML---G 80 (267)
T ss_pred -------------------------------------------------------ceeeeccCCccCCHHHHHHHh---c
Confidence 345677788888877776542 2
Q ss_pred CCCCchhhHHHhhhhcccccccCCchhhhHHHhhhhHHHHHhhcCCCCCCCCCCCCCccccccccccccccccccccccC
Q psy13068 480 QGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERETKMEEECQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFN 559 (950)
Q Consensus 480 ~~~pq~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~s~~lp~~~~~~~~~~~~l~rs~fL~~l~ 559 (950)
+..++++.. + ....|. +|| .+ .+..++||+|++
T Consensus 81 ~~~~~~~~~---~--~~~~~~---------------------------~~~---~~------------p~~~~~flvpl~ 113 (267)
T cd01478 81 LGGPAMRPS---A--SQHPGA---------------------------GNP---LP------------SAAASRFLLPVS 113 (267)
T ss_pred ccccccccc---c--cCcCCc---------------------------ccc---cc------------ccccccEEEEHH
Confidence 222221000 0 000000 010 11 112368999999
Q ss_pred CCCcchHHHHHHHhhCCCCCccceeeeccCCCCCccccccccchHHHHHHHHhhcc----cccc-cccCCCCceEecccc
Q psy13068 560 NSPDETSYYRTLLIHLPHYSRFQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQP----VLYS-YGFNGPPVPVLLDTS 634 (950)
Q Consensus 560 e~~~~~~~i~~lL~~L~~~~~~~~lqvf~~s~~~~~~~r~~G~~~Al~~A~~ll~p----~~~~-~~f~gGp~~v~l~s~ 634 (950)
||++. |+++||+|++ ++|++ +..+++.||+| +||++|..+|+. .+++ .+|++||+
T Consensus 114 e~~~~---i~~lLe~L~~-~~~~~-------~~~~r~~r~~G--~Al~~A~~ll~~~~~~~gGki~~F~sg~p------- 173 (267)
T cd01478 114 QCEFT---LTDLLEQLQP-DPWPV-------PAGHRPLRCTG--VALSIAVGLLEACFPNTGARIMLFAGGPC------- 173 (267)
T ss_pred HHHHH---HHHHHHhCcc-ccccc-------CCCCCCCCchH--HHHHHHHHHHHhhcCCCCcEEEEEECCCC-------
Confidence 99988 9999999999 88998 77889999999 999999999982 2222 56777777
Q ss_pred ccCCceeecccchhhhhhccCCCccccccccccccchhhhhhHHHHHHHHHHHhhcccEEEEEeccCCCCCchhhhhhhh
Q psy13068 635 SIKPDCILLMDTFFQLLIFHGEEPIRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCN 714 (950)
Q Consensus 635 s~GPG~i~~~d~~~~~~~~~~~~~irs~~d~~k~~~~~~~pa~~FYk~LA~~~~~~gIsVDLF~~s~~~vdlatl~~L~~ 714 (950)
|+|||+|+-++ .++++|+|.|++++++++++++++||++||.+|+++||+||+|+++.+|+|++||+.|++
T Consensus 174 T~GpG~l~~r~---------~~~~~r~~~d~~~~~~~~~~~a~~fY~~la~~~~~~~vsvDlF~~s~d~vglaem~~l~~ 244 (267)
T cd01478 174 TVGPGAVVSTE---------LKDPIRSHHDIDKDNAKYYKKAVKFYDSLAKRLAANGHAVDIFAGCLDQVGLLEMKVLVN 244 (267)
T ss_pred CCCCceeeccc---------cccccccccccccchhhhhhhHHHHHHHHHHHHHhCCeEEEEEeccccccCHHHHHHHHH
Confidence 99999999554 467799999999888889999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEcCCCCC
Q psy13068 715 ATGKPSHVLIAIEFAQ 730 (950)
Q Consensus 715 ~TGG~~~v~~y~~F~~ 730 (950)
.||| .+|+||+|+.
T Consensus 245 ~TGG--~v~~~~~f~~ 258 (267)
T cd01478 245 STGG--HVVLSDSFTT 258 (267)
T ss_pred hcCc--EEEEeCCcch
Confidence 9999 9999999975
No 12
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=99.96 E-value=6.6e-30 Score=274.41 Aligned_cols=139 Identities=15% Similarity=0.203 Sum_probs=114.5
Q ss_pred cccccccCCCCcchHHHHHHHhhCCCCCccceeeeccCCCCCccccccccchHHHHHHHHhhcccccc-cccCCCCceEe
Q psy13068 552 SQFLQVFNNSPDETSYYRTLLIHLPHYSRFQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYS-YGFNGPPVPVL 630 (950)
Q Consensus 552 s~fL~~l~e~~~~~~~i~~lL~~L~~~~~~~~lqvf~~s~~~~~~~r~~G~~~Al~~A~~ll~p~~~~-~~f~gGp~~v~ 630 (950)
++||++++||++. |+++|++||. +| .+.+++.||+| +||++|..+|++.+++ .+|++|++
T Consensus 83 ~~~lv~l~e~~~~---i~~lL~~L~~--------~~---~~~~~~~~c~G--~Al~~A~~lL~~~GGkIi~f~s~~p--- 143 (244)
T cd01479 83 DGLLVNLKESRQV---IEDLLDQIPE--------MF---QDTKETESALG--PALQAAFLLLKETGGKIIVFQSSLP--- 143 (244)
T ss_pred cceeecHHHHHHH---HHHHHHHHHH--------HH---hcCCCCcccHH--HHHHHHHHHHHhcCCEEEEEeCCCC---
Confidence 4688999999877 9999999976 34 34567799999 9999999999954433 45555555
Q ss_pred ccccccCCceeecccchhhhhhccCCCccccccccccccchhhhhhHHHHHHHHHHHhhcccEEEEEeccCCCCCchhhh
Q psy13068 631 LDTSSIKPDCILLMDTFFQLLIFHGEEPIRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMK 710 (950)
Q Consensus 631 l~s~s~GPG~i~~~d~~~~~~~~~~~~~irs~~d~~k~~~~~~~pa~~FYk~LA~~~~~~gIsVDLF~~s~~~vdlatl~ 710 (950)
++|||+|+.+++ ++ ++.+. + ++++++|+++||++||.+|+++||+||+|+++.+|+|+++|+
T Consensus 144 ----t~GpG~l~~~~~---------~~-~~~~~---~-e~~~~~p~~~fY~~la~~~~~~~isvDlF~~~~~~~dla~l~ 205 (244)
T cd01479 144 ----TLGAGKLKSRED---------PK-LLSTD---K-EKQLLQPQTDFYKKLALECVKSQISVDLFLFSNQYVDVATLG 205 (244)
T ss_pred ----CcCCcccccCcc---------cc-ccCch---h-hhhhcCcchHHHHHHHHHHHHcCeEEEEEEccCcccChhhhh
Confidence 999999995543 22 34332 2 347899999999999999999999999999999999999999
Q ss_pred hhhhccCCCcEEEEcCCCC
Q psy13068 711 LCCNATGKPSHVLIAIEFA 729 (950)
Q Consensus 711 ~L~~~TGG~~~v~~y~~F~ 729 (950)
.|++.||| .+++|++|+
T Consensus 206 ~l~~~TGG--~v~~y~~~~ 222 (244)
T cd01479 206 CLSRLTGG--QVYYYPSFN 222 (244)
T ss_pred hhhhhcCc--eEEEECCcc
Confidence 99999999 999999443
No 13
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=99.96 E-value=2.3e-29 Score=269.15 Aligned_cols=142 Identities=24% Similarity=0.341 Sum_probs=118.6
Q ss_pred cccccccCCCCcchHHHHHHHhhCCCCCccceeeeccCCCCCccccccccchHHHHHHHHhhccc--ccc-cccCCCCce
Q psy13068 552 SQFLQVFNNSPDETSYYRTLLIHLPHYSRFQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPV--LYS-YGFNGPPVP 628 (950)
Q Consensus 552 s~fL~~l~e~~~~~~~i~~lL~~L~~~~~~~~lqvf~~s~~~~~~~r~~G~~~Al~~A~~ll~p~--~~~-~~f~gGp~~ 628 (950)
..|++++.||++. |.++|++|++ .|.+ .+++++.||+| +||++|..+|+.. ++. .+|++|++
T Consensus 82 ~~~l~~~~e~~~~---i~~~l~~l~~--------~~~~-~~~~~~~~~~G--~Al~~A~~ll~~~~~gGkI~~f~sg~p- 146 (239)
T cd01468 82 DRFLVPLSECKKV---IHDLLEQLPP--------MFWP-VPTHRPERCLG--PALQAAFLLLKGTFAGGRIIVFQGGLP- 146 (239)
T ss_pred CceeeeHHHHHHH---HHHHHHhhhh--------hccc-cCCCCCcccHH--HHHHHHHHHHhhcCCCceEEEEECCCC-
Confidence 3577888888776 9999999998 2321 13678899999 9999999999965 223 45566666
Q ss_pred EeccccccCCceeecccchhhhhhccCCCccccccccccccchhhhhhHHHHHHHHHHHhhcccEEEEEeccCCCCCchh
Q psy13068 629 VLLDTSSIKPDCILLMDTFFQLLIFHGEEPIRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLE 708 (950)
Q Consensus 629 v~l~s~s~GPG~i~~~d~~~~~~~~~~~~~irs~~d~~k~~~~~~~pa~~FYk~LA~~~~~~gIsVDLF~~s~~~vdlat 708 (950)
|+|||+|..+++ ++++|+| +++++++++.+||++||.+|+++||+||+|+++.+|+|++|
T Consensus 147 ------t~GpG~l~~~~~---------~~~~~~~-----~e~~~~~~a~~fY~~la~~~~~~~isvdlF~~~~~~~dl~~ 206 (239)
T cd01468 147 ------TVGPGKLKSRED---------KEPIRSH-----DEAQLLKPATKFYKSLAKECVKSGICVDLFAFSLDYVDVAT 206 (239)
T ss_pred ------CCCCCccccCcc---------cccCCCc-----cchhcccccHHHHHHHHHHHHHcCeEEEEEeccccccCHHH
Confidence 999999996543 4456654 35689999999999999999999999999999999999999
Q ss_pred hhhhhhccCCCcEEEEcCCCCC
Q psy13068 709 MKLCCNATGKPSHVLIAIEFAQ 730 (950)
Q Consensus 709 l~~L~~~TGG~~~v~~y~~F~~ 730 (950)
|++|++.||| .+++|++|+.
T Consensus 207 l~~l~~~TGG--~v~~y~~f~~ 226 (239)
T cd01468 207 LKQLAKSTGG--QVYLYDSFQA 226 (239)
T ss_pred hhhhhhcCCc--eEEEeCCCCC
Confidence 9999999999 9999999965
No 14
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=99.95 E-value=2.5e-28 Score=261.57 Aligned_cols=143 Identities=20% Similarity=0.251 Sum_probs=106.8
Q ss_pred cccccccCCCCcchHHHHHHHhhCCCCCccceeeeccCCCCCccccccccchHHHHHHHHhhc--ccccc-cccCCCCce
Q psy13068 552 SQFLQVFNNSPDETSYYRTLLIHLPHYSRFQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQ--PVLYS-YGFNGPPVP 628 (950)
Q Consensus 552 s~fL~~l~e~~~~~~~i~~lL~~L~~~~~~~~lqvf~~s~~~~~~~r~~G~~~Al~~A~~ll~--p~~~~-~~f~gGp~~ 628 (950)
+.|++++.+|++. |+++|++|++ .|.+ +...++.||+| +||++|..+|+ ..+++ .+|++|++
T Consensus 82 ~~llv~~~e~~~~---i~~ll~~L~~--------~~~~-~~~~~~~~c~G--~Al~~A~~ll~~~~~gGkI~~F~s~~p- 146 (243)
T PF04811_consen 82 DGLLVPLSECRDA---IEELLESLPS--------IFPE-TAGKRPERCLG--SALSAALSLLSSRNTGGKILVFTSGPP- 146 (243)
T ss_dssp SSSSEETTTCHHH---HHHHHHHHHH--------HSTT--TTB-----HH--HHHHHHHHHHHHHTS-EEEEEEESS---
T ss_pred ccEEEEhHHhHHH---HHHHHHHhhh--------hccc-ccccCccccHH--HHHHHHHHHHhccccCCEEEEEeccCC-
Confidence 5778899998876 9999999987 3332 23578899999 99999999999 43233 45555555
Q ss_pred EeccccccCC-ceeecccchhhhhhccCCCccccccccccccchhhhhhHHHHHHHHHHHhhcccEEEEEeccCCCCCch
Q psy13068 629 VLLDTSSIKP-DCILLMDTFFQLLIFHGEEPIRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLL 707 (950)
Q Consensus 629 v~l~s~s~GP-G~i~~~d~~~~~~~~~~~~~irs~~d~~k~~~~~~~pa~~FYk~LA~~~~~~gIsVDLF~~s~~~vdla 707 (950)
++|| |+|. .++ + .++.+++|++..+++++.+||++||++|+++||+||+|+++.+|+|++
T Consensus 147 ------t~G~Gg~l~-~~~----------~--~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~~~l~ 207 (243)
T PF04811_consen 147 ------TYGPGGSLK-KRE----------D--SSHYDTEKEKALLLPPANEFYKKLAEECSKQGISVDLFVFSSDYVDLA 207 (243)
T ss_dssp -------SSSTTSS--SBT----------T--SCCCCHCTTHHCHSHSSSHHHHHHHHHHHHCTEEEEEEEECSS--SHH
T ss_pred ------CCCCCceec-ccc----------c--ccccccccchhhhccccchHHHHHHHHHHhcCCEEEEEeecCCCCCcH
Confidence 9999 5665 332 1 256677777778899999999999999999999999999999999999
Q ss_pred hhhhhhhccCCCcEEEEcCCCCC
Q psy13068 708 EMKLCCNATGKPSHVLIAIEFAQ 730 (950)
Q Consensus 708 tl~~L~~~TGG~~~v~~y~~F~~ 730 (950)
||+.|++.||| .++||++|+.
T Consensus 208 tl~~l~~~TGG--~l~~y~~f~~ 228 (243)
T PF04811_consen 208 TLGPLARYTGG--SLYYYPNFNA 228 (243)
T ss_dssp HHTHHHHCTT---EEEEETTTTC
T ss_pred hHHHHHHhCce--eEEEeCCCCC
Confidence 99999999999 9999999983
No 15
>PF04815 Sec23_helical: Sec23/Sec24 helical domain; InterPro: IPR006900 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region, and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the all-helical domain, which forms an approximately 105-residue segment with the C-terminal 30 residues. The linker between alpha-M and alpha-N contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_B 2NUP_B 2NUT_B 3EGX_B 3EH2_C 3EH1_A 3EFO_B 3EG9_B 2QTV_A 1M2O_C ....
Probab=99.83 E-value=2.3e-20 Score=175.33 Aligned_cols=101 Identities=24% Similarity=0.392 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcccCC--CCCccccCcccccHHHHHHHHHhcccccCCCCC
Q psy13068 800 QEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLIRLCQKFGHYNKD--DPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNS 877 (950)
Q Consensus 800 ~eAi~~llaR~av~~~~~~~l~d~r~~L~~~lv~il~~Yr~~~~~--~~~qliLPesLklLP~yi~~LlKS~~Lr~~n~s 877 (950)
|||++++++|+++.++.++++.++|++++++|++++++||++|++ .++||+|||+||+||+|+++|+||++|++.+++
T Consensus 1 Qda~~~llak~ai~~~~~~~l~~~r~~l~~~~v~il~~Yr~~~~~~~~~~qLilPe~lklLPly~l~llKs~alr~~~v~ 80 (103)
T PF04815_consen 1 QDAITSLLAKQAIDKALSSSLKDARESLDNRLVDILAAYRKNCASSSSSGQLILPESLKLLPLYILALLKSPALRPTNVS 80 (103)
T ss_dssp HHHHHHHHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHHHHHHCTTECCCTEEEEEGGGTTHHHHHHHHHTSTTTSCSTS-
T ss_pred CHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHhhccCCCCchhhhCCHHHHHHHHHHHHHHcchhhcCCCCC
Confidence 799999999999999999999999999999999999999999975 458999999999999999999999999998999
Q ss_pred hhHHHHHHHHHcCCCHHhHHhcc
Q psy13068 878 PDETSYYRHVLMREDLSQSLIMI 900 (950)
Q Consensus 878 pDeR~~~~~~l~s~~v~~~l~~i 900 (950)
+|||+|+++++++++++.++.||
T Consensus 81 ~D~R~~~~~~~~~~~~~~~~~~i 103 (103)
T PF04815_consen 81 PDERAYAMHLLLSMPVDSLLRMI 103 (103)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHHH
T ss_pred CcHHHHHHHHHHCCCHHHHHhhC
Confidence 99999999999999999999875
No 16
>KOG1984|consensus
Probab=99.37 E-value=2.3e-13 Score=161.06 Aligned_cols=94 Identities=20% Similarity=0.266 Sum_probs=85.3
Q ss_pred HHhccCCCCceEEeecccCCchhhhhhcccCceeeeecCCCCC----CCCCC---cccceeeccccccceeccccccccc
Q psy13068 7 FFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKP----DLPPL---QYEPLLCMRNQCRAILNPLCQGCVS 79 (950)
Q Consensus 7 ~~~~~~~~~~~r~~wn~~p~s~~~~~~~~~p~g~~~~p~~~~~----~~p~~---~~~p~~c~~~~c~~~~np~~~~~~~ 79 (950)
.+|+|.+...+|||-+-+|+|--.+....+|||++++||+... ++|+| +.+|+||.| ||||+|||.| |
T Consensus 280 ~DqGN~sPr~mr~T~Y~iP~T~Dl~~as~iPLalvIqPfa~l~p~E~~~~vVd~g~sgPvRC~R--CkaYinPFmq---F 354 (1007)
T KOG1984|consen 280 QDQGNCSPRFMRCTMYTIPCTNDLLKASQIPLALVIQPFATLTPNEAPVPVVDLGESGPVRCNR--CKAYINPFMQ---F 354 (1007)
T ss_pred eccCCCCcchheeecccCCccHhHHHhcCCcceeEecccccCCcccCCCceecCCCCCCcchhh--hhhhcCcceE---E
Confidence 4689999999999999999999999999999999999999776 37777 558999997 9999999999 8
Q ss_pred ccccCceeccccccccCCCcccccccccc
Q psy13068 80 STLEALWLKSIFFQAEDGIRDRSFGFHNS 108 (950)
Q Consensus 80 ~~~~~~w~c~~c~~~n~~~~~~~~~~~~~ 108 (950)
.+.+++|+||||+..|+...| +|..+
T Consensus 355 ~~~gr~f~Cn~C~~~n~vp~~---yf~~L 380 (1007)
T KOG1984|consen 355 IDGGRKFICNFCGSKNQVPDD---YFNHL 380 (1007)
T ss_pred ecCCceEEecCCCccccCChh---hcccC
Confidence 899999999999999998888 66444
No 17
>KOG1985|consensus
Probab=99.30 E-value=5.3e-13 Score=157.83 Aligned_cols=85 Identities=21% Similarity=0.377 Sum_probs=76.6
Q ss_pred cCCCCceEEeecccCCchhhhhhcccCceeeeecCC---CCCCCCCCccc-ceeeccccccceecccccccccccccCce
Q psy13068 11 NEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLK---EKPDLPPLQYE-PLLCMRNQCRAILNPLCQGCVSSTLEALW 86 (950)
Q Consensus 11 ~~~~~~~r~~wn~~p~s~~~~~~~~~p~g~~~~p~~---~~~~~p~~~~~-p~~c~~~~c~~~~np~~~~~~~~~~~~~w 86 (950)
|-+.+.||.|.+.+|.|.....+.++|+|.+++||+ |-..+|+++.+ -|||+| ||+||||||. ++..|++|
T Consensus 167 nc~p~y~RsTl~~iP~t~sLl~kskLPlglvv~Pf~~~~d~~~~p~~~~~~IvRCr~--CRtYiNPFV~---fid~gr~W 241 (887)
T KOG1985|consen 167 NCSPSYVRSTLSAIPQTQSLLKKSKLPLGLVVHPFAHLDDIDPLPVITSTLIVRCRR--CRTYINPFVE---FIDQGRRW 241 (887)
T ss_pred CCCHHHHHHHHHhCCccHHHHHhcCCCceEEEeecccccccCCCCcccCCceeeehh--hhhhcCCeEE---ecCCCcee
Confidence 345778999999999999999999999999999999 66678888774 559996 9999999999 99999999
Q ss_pred eccccccccCCCcc
Q psy13068 87 LKSIFFQAEDGIRD 100 (950)
Q Consensus 87 ~c~~c~~~n~~~~~ 100 (950)
+||+|+..|+...|
T Consensus 242 rCNlC~~~NdvP~~ 255 (887)
T KOG1985|consen 242 RCNLCGRVNDVPDD 255 (887)
T ss_pred eechhhhhcCCcHH
Confidence 99999999997766
No 18
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=99.28 E-value=1.2e-12 Score=102.71 Aligned_cols=40 Identities=55% Similarity=1.269 Sum_probs=29.4
Q ss_pred cccccccccccceeeccceEeCCCCeeEecCCCCCCCCchhh
Q psy13068 248 EPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQY 289 (950)
Q Consensus 248 ~p~rC~~~~C~aylNP~~~~d~~g~~w~C~~C~~~N~~p~~y 289 (950)
+|+||++ |+||||||+++|.+|++|+|+||+..|.+|++|
T Consensus 1 ~p~rC~~--C~aylNp~~~~~~~~~~w~C~~C~~~N~lp~~Y 40 (40)
T PF04810_consen 1 GPVRCRR--CRAYLNPFCQFDDGGKTWICNFCGTKNPLPPHY 40 (40)
T ss_dssp -S-B-TT--T--BS-TTSEEETTTTEEEETTT--EEE--GGG
T ss_pred CccccCC--CCCEECCcceEcCCCCEEECcCCCCcCCCCCCC
Confidence 5899999 999999999999999999999999999999998
No 19
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=99.22 E-value=2.4e-12 Score=151.28 Aligned_cols=88 Identities=23% Similarity=0.286 Sum_probs=78.5
Q ss_pred HhccCCCCceEEeecccCCchhhhhhcccCceeeeecCCCCCC---CCCCccc--ceeeccccccceecccccccccccc
Q psy13068 8 FYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPD---LPPLQYE--PLLCMRNQCRAILNPLCQGCVSSTL 82 (950)
Q Consensus 8 ~~~~~~~~~~r~~wn~~p~s~~~~~~~~~p~g~~~~p~~~~~~---~p~~~~~--p~~c~~~~c~~~~np~~~~~~~~~~ 82 (950)
.|+|++.+.||+|-+.+|.+......+++|+|.+++||.+..+ .+++..+ |+||.| ||+|+|||+| +.+.
T Consensus 144 e~~n~~p~yvrsT~yaiP~t~dl~~~skiPfgLVI~Pf~~l~~e~~~vpl~~d~~ivRCrr--CrsYiNPfv~---fi~~ 218 (861)
T COG5028 144 EQSNCSPKYVRSTMYAIPETNDLLKKSKIPFGLVIRPFLELYPEEDPVPLVEDGSIVRCRR--CRSYINPFVQ---FIEQ 218 (861)
T ss_pred ccCCCCHHHHHHHHhhCCCchhHHHhcCCCceEEeehhhhcCccCCCCccCCCCcchhhhh--hHhhcCceEE---EecC
Confidence 4788889999999999999999999999999999999988774 5555444 899997 9999999999 8899
Q ss_pred cCceeccccccccCCCcc
Q psy13068 83 EALWLKSIFFQAEDGIRD 100 (950)
Q Consensus 83 ~~~w~c~~c~~~n~~~~~ 100 (950)
+++|+||+|...|+...+
T Consensus 219 g~kw~CNiC~~kN~vp~~ 236 (861)
T COG5028 219 GRKWRCNICRSKNDVPEG 236 (861)
T ss_pred CcEEEEeeccccccCccc
Confidence 999999999999986655
No 20
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=99.08 E-value=2.6e-11 Score=95.11 Aligned_cols=39 Identities=31% Similarity=0.544 Sum_probs=26.9
Q ss_pred cceeeccccccceecccccccccccccCceeccccccccCCCcc
Q psy13068 57 EPLLCMRNQCRAILNPLCQGCVSSTLEALWLKSIFFQAEDGIRD 100 (950)
Q Consensus 57 ~p~~c~~~~c~~~~np~~~~~~~~~~~~~w~c~~c~~~n~~~~~ 100 (950)
+|+||++ |+||||||++ +|.+++.|+||||+..|+...+
T Consensus 1 ~p~rC~~--C~aylNp~~~---~~~~~~~w~C~~C~~~N~lp~~ 39 (40)
T PF04810_consen 1 GPVRCRR--CRAYLNPFCQ---FDDGGKTWICNFCGTKNPLPPH 39 (40)
T ss_dssp -S-B-TT--T--BS-TTSE---EETTTTEEEETTT--EEE--GG
T ss_pred CccccCC--CCCEECCcce---EcCCCCEEECcCCCCcCCCCCC
Confidence 6899995 9999999999 9999999999999999986654
No 21
>PF08033 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterPro: IPR012990 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes part of the Sec23/24 beta-barrel domain, which is formed from approximately 180 residues from three segments of the polypeptide. The strands of the barrel are oriented roughly parallel to the membrane such that one end of the barrel forms part of the inner surface of the coat and the other end part of the membrane-distal surface. The barrel is constructed from two opposed sheets: a six-stranded beta sheet facing partly towards the zinc finger domain and partly towards the solvent, and a five-stranded beta sheet facing the helical domain.; PDB: 3EFO_B 3EG9_B 1PD0_A 1PD1_A 1M2V_B 1PCX_A 3EH2_C 3EGD_A 2NUP_A 3EGX_A ....
Probab=98.91 E-value=1.3e-09 Score=101.33 Aligned_cols=52 Identities=33% Similarity=0.512 Sum_probs=45.2
Q ss_pred CCCCeeEeeecCC----------------C------------c----CCCCCCCCCCCceEEEEEEeeecCCCcEEEEEE
Q psy13068 731 PSPMLKAQKRLGS----------------T------------T----AAHGAPIPQGGRGCIQFITHYQAPSGEKKVRVT 778 (950)
Q Consensus 731 ~S~GlkV~~~~Gs----------------T------------t----~~~de~L~~~~~~yIQ~AlLYT~~~GeRRIRV~ 778 (950)
||+|++|+++||+ + + +++++++...+.+|||+|++||+++|+||||||
T Consensus 10 ~S~gl~v~~~~G~~~~~~~~s~~~~g~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~iQ~~~~Yt~~~G~r~iRV~ 89 (96)
T PF08033_consen 10 CSKGLKVSGVIGPCFNRSSVSDNEIGEGDTTRWKLPSLDPDTSFAFEFEIDEDLPNGSQAYIQFALLYTDSNGERRIRVT 89 (96)
T ss_dssp E-TTEEEEEEESSSEESSTBESSECSBSSCSEEEEEEEETT--EEEEEEESSBTBTTSEEEEEEEEEEEETTSEEEEEEE
T ss_pred ECCCeEEEEEEcCccccccccceeeccCCccEEEecccCCCCEEEEEEEECCCCCCCCeEEEEEEEEEECCCCCEEEEEE
Confidence 8999999999993 1 0 566778877889999999999999999999999
Q ss_pred eeee
Q psy13068 779 TIAR 782 (950)
Q Consensus 779 Tl~l 782 (950)
|+++
T Consensus 90 T~~l 93 (96)
T PF08033_consen 90 TLSL 93 (96)
T ss_dssp EEEE
T ss_pred eecc
Confidence 9999
No 22
>PTZ00395 Sec24-related protein; Provisional
Probab=97.81 E-value=7.1e-06 Score=102.91 Aligned_cols=87 Identities=11% Similarity=0.033 Sum_probs=75.6
Q ss_pred HhccCCCCceEEeecccCCchhhhhhcccCceeeeecCCCCC---CCCCC-----------cccceeeccccccceeccc
Q psy13068 8 FYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKP---DLPPL-----------QYEPLLCMRNQCRAILNPL 73 (950)
Q Consensus 8 ~~~~~~~~~~r~~wn~~p~s~~~~~~~~~p~g~~~~p~~~~~---~~p~~-----------~~~p~~c~~~~c~~~~np~ 73 (950)
++++.+.-.||-|.-.+|.++-..+.+.+|+|.+++||+... .+|.+ +++++||.+ |++|+||+
T Consensus 646 dtgn~dP~~~r~tmY~iP~~~~~~~~~~iP~gi~v~Pfa~~~~~e~~~~~~~~~~~~d~~~~~~~~rc~~--c~~y~~~~ 723 (1560)
T PTZ00395 646 DTGKADPRFLKSTLYQIPLFSETLKLSQIPFGIIVNPFACLNEGEGIDKIDMKDIINDKEENIEILRCPK--CLGYLHAT 723 (1560)
T ss_pred ecCCCChhhhhhhhhcCcchHHHHHhcCCCceeecchhhhcCCCCCCcccchhhcccchhhccceeecch--hHhhhcch
Confidence 478999999999999999999999999999999999998865 36655 358999995 99999999
Q ss_pred ccccccccccCceeccccccccCCCcc
Q psy13068 74 CQGCVSSTLEALWLKSIFFQAEDGIRD 100 (950)
Q Consensus 74 ~~~~~~~~~~~~w~c~~c~~~n~~~~~ 100 (950)
++ +|+. ++..||||...+.-.++
T Consensus 724 ~~---~~~~-~~~~c~~c~~~~~i~e~ 746 (1560)
T PTZ00395 724 IL---EDIS-SSVQCVFCDTDFLINEN 746 (1560)
T ss_pred he---eccc-ceEEEEecCCcchhhHH
Confidence 99 8877 99999999987754333
No 23
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=97.08 E-value=0.00034 Score=61.48 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=31.0
Q ss_pred CcccccccccccCCeEEEEECCCEEEEEEcCCC
Q psy13068 913 PVPVLLDTSSIKPDCILLMDTFFQLLIFHGEVS 945 (950)
Q Consensus 913 P~~v~LS~esL~~dgIyLLD~g~~I~IwvG~~V 945 (950)
|+.++++.++|.++++||||+|..||+|+|+..
T Consensus 5 ~~~~~~s~~~L~s~~~yIld~~~~i~vW~G~~~ 37 (76)
T PF00626_consen 5 PEQVPLSQSSLNSDDCYILDCGYEIFVWVGKKS 37 (76)
T ss_dssp EEEESSSGGGEETTSEEEEEESSEEEEEEHTTS
T ss_pred CCcCCCCHHHcCCCCEEEEEeCCCcEEEEeccC
Confidence 677899999999999999999999999999983
No 24
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=95.56 E-value=0.00081 Score=74.05 Aligned_cols=143 Identities=14% Similarity=0.103 Sum_probs=97.6
Q ss_pred ccccccccccccchhhhhhhhcCCCCCCccccCCcccccccceeeeecccccccchhhHHHHhhccCC------------
Q psy13068 138 FRDGILHDNNIYNFTPLFKECLHPPNGRVLEWNGTRVAHSTLTVQLSLETLKISMTTYEEFFYQNEER------------ 205 (950)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~st~~~~~~~~~~~~~~~~~~~~~~~~e~~------------ 205 (950)
-+|+.|+..|...++.+|+++..++|+... ++||.+++|. ++.+|...++..+...+++
T Consensus 106 ~~flvpl~e~~~~i~~lLe~L~~~~~~~~~---~~r~~r~~G~------Al~~A~~ll~~~~~~~gGki~~F~sg~pT~G 176 (267)
T cd01478 106 SRFLLPVSQCEFTLTDLLEQLQPDPWPVPA---GHRPLRCTGV------ALSIAVGLLEACFPNTGARIMLFAGGPCTVG 176 (267)
T ss_pred ccEEEEHHHHHHHHHHHHHhCcccccccCC---CCCCCCchHH------HHHHHHHHHHhhcCCCCcEEEEEECCCCCCC
Confidence 378889999999999999999999987765 6677777777 6666655554332222321
Q ss_pred ------CeeeeeccccCCCHHHHhhcccceEEEeccCCCCCCCCCCCCcccccccccccceeeccceEeCCCCeeEecCC
Q psy13068 206 ------DGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFC 279 (950)
Q Consensus 206 ------~~iR~t~~~~P~t~~~a~k~~~Plg~~~~Pl~~~~~~p~~~~~p~rC~~~~C~aylNP~~~~d~~g~~w~C~~C 279 (950)
+..+-+++.+.+.+++..++-.|.-..|.-|+.+-...++..+...|..+| -.+.+.-.-+..+||....-.-
T Consensus 177 pG~l~~r~~~~~~r~~~d~~~~~~~~~~~a~~fY~~la~~~~~~~vsvDlF~~s~d~-vglaem~~l~~~TGG~v~~~~~ 255 (267)
T cd01478 177 PGAVVSTELKDPIRSHHDIDKDNAKYYKKAVKFYDSLAKRLAANGHAVDIFAGCLDQ-VGLLEMKVLVNSTGGHVVLSDS 255 (267)
T ss_pred CceeeccccccccccccccccchhhhhhhHHHHHHHHHHHHHhCCeEEEEEeccccc-cCHHHHHHHHHhcCcEEEEeCC
Confidence 111233445555555555555666666766665433456777888998876 4555666667788999888888
Q ss_pred CCCCCCchhhh
Q psy13068 280 FQRNAFPPQYA 290 (950)
Q Consensus 280 ~~~N~~p~~y~ 290 (950)
++...|+++|+
T Consensus 256 f~~~~f~~s~~ 266 (267)
T cd01478 256 FTTSIFKQSFQ 266 (267)
T ss_pred cchHHHHHHhc
Confidence 88888877764
No 25
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=94.67 E-value=0.03 Score=51.06 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=29.4
Q ss_pred ccccccccccCCeEEEEECCCEEEEEEcCCCC
Q psy13068 915 PVLLDTSSIKPDCILLMDTFFQLLIFHGEVSN 946 (950)
Q Consensus 915 ~v~LS~esL~~dgIyLLD~g~~I~IwvG~~V~ 946 (950)
.++++.++|.++.+||||+|..||+|+|+.++
T Consensus 15 ~~~~~~~~L~s~d~fild~~~~iyvW~G~~as 46 (90)
T smart00262 15 EVPFSQGSLNSGDCYILDTGSEIYVWVGKKSS 46 (90)
T ss_pred EcCCCHHHCCCCCEEEEECCCEEEEEECCCCC
Confidence 35788899999999999999999999999876
No 26
>PRK13685 hypothetical protein; Provisional
Probab=91.35 E-value=1.9 Score=49.00 Aligned_cols=42 Identities=19% Similarity=0.052 Sum_probs=32.9
Q ss_pred HHHHHHhhcccEEEEEeccCCC-------------CCchhhhhhhhccCCCcEEEEc
Q psy13068 682 GLALRAAIVGHAIDIYSCALDQ-------------TGLLEMKLCCNATGKPSHVLIA 725 (950)
Q Consensus 682 ~LA~~~~~~gIsVDLF~~s~~~-------------vdlatl~~L~~~TGG~~~v~~y 725 (950)
+.+..+.+.||.|..+.++.+. .|-..|..+++.||| ..|+.
T Consensus 219 ~aa~~a~~~gi~i~~Ig~G~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG--~~~~~ 273 (326)
T PRK13685 219 TAARTAKDQGVPISTISFGTPYGSVEINGQRQPVPVDDESLKKIAQLSGG--EFYTA 273 (326)
T ss_pred HHHHHHHHcCCeEEEEEECCCCCCcCcCCceeeecCCHHHHHHHHHhcCC--EEEEc
Confidence 3556677889999999887642 577899999999999 66554
No 27
>PF04815 Sec23_helical: Sec23/Sec24 helical domain; InterPro: IPR006900 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region, and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the all-helical domain, which forms an approximately 105-residue segment with the C-terminal 30 residues. The linker between alpha-M and alpha-N contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_B 2NUP_B 2NUT_B 3EGX_B 3EH2_C 3EH1_A 3EFO_B 3EG9_B 2QTV_A 1M2O_C ....
Probab=89.84 E-value=0.14 Score=48.40 Aligned_cols=85 Identities=19% Similarity=0.312 Sum_probs=59.2
Q ss_pred HHhhhhcccccccCCchhhhHHHhhhhHHHHHhhcCCCCCCCCC--CCCCccccccccccccccccccccccCCCCcchH
Q psy13068 489 MEEQRIEDEEDQEDGNEEIEDERETKMEEECQKFGHYNKDDPHS--FQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETS 566 (950)
Q Consensus 489 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~s--~~lp~~~~~~~~~~~~l~rs~fL~~l~e~~~~~~ 566 (950)
..+.+++...-.+..-.++.++++.+..+++..|+.+....+.+ +.+|+++.++|.|++.|.||..+.+.+...|++.
T Consensus 6 ~llak~ai~~~~~~~l~~~r~~l~~~~v~il~~Yr~~~~~~~~~~qLilPe~lklLPly~l~llKs~alr~~~v~~D~R~ 85 (103)
T PF04815_consen 6 SLLAKQAIDKALSSSLKDARESLDNRLVDILAAYRKNCASSSSSGQLILPESLKLLPLYILALLKSPALRPTNVSPDERA 85 (103)
T ss_dssp HHHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHHHHHHCTTECCCTEEEEEGGGTTHHHHHHHHHTSTTTSCSTS-HHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHhhccCCCCchhhhCCHHHHHHHHHHHHHHcchhhcCCCCCCcHHH
Confidence 34445555444444445677788889999999999887766655 8999999999999999999998666333344444
Q ss_pred HHHHHHh
Q psy13068 567 YYRTLLI 573 (950)
Q Consensus 567 ~i~~lL~ 573 (950)
+....+.
T Consensus 86 ~~~~~~~ 92 (103)
T PF04815_consen 86 YAMHLLL 92 (103)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4333333
No 28
>KOG0443|consensus
Probab=87.12 E-value=0.66 Score=57.28 Aligned_cols=49 Identities=22% Similarity=0.376 Sum_probs=39.9
Q ss_pred hccccceEEecc-CCC---CcccccccccccCCeEEEEECCCEEEEEEcCCCC
Q psy13068 898 IMIQPVLYSYGF-NGP---PVPVLLDTSSIKPDCILLMDTFFQLLIFHGEVSN 946 (950)
Q Consensus 898 ~~iYP~L~slh~-~g~---P~~v~LS~esL~~dgIyLLD~g~~I~IwvG~~V~ 946 (950)
.-..|+||.-+. .|. -+....+-+.|.+|.|||||++..||||||+.++
T Consensus 616 ~~~~PrLF~Cs~~~g~f~~~EI~~F~QdDL~tdDi~lLDt~~evfvWvG~~a~ 668 (827)
T KOG0443|consen 616 PERDPRLFSCSNKTGSFVVEEIYNFTQDDLMTDDIMLLDTWSEVFVWVGQEAN 668 (827)
T ss_pred CCCCCcEEEEEecCCcEEEEEecCcchhhccccceEEEecCceEEEEecCCCC
Confidence 446699999884 232 2334788899999999999999999999999887
No 29
>KOG0444|consensus
Probab=86.80 E-value=0.55 Score=56.70 Aligned_cols=43 Identities=33% Similarity=0.497 Sum_probs=36.5
Q ss_pred cceEEeccCC---CCcccccccccccCCeEEEEECCCEEEEEEcCC
Q psy13068 902 PVLYSYGFNG---PPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEV 944 (950)
Q Consensus 902 P~L~slh~~g---~P~~v~LS~esL~~dgIyLLD~g~~I~IwvG~~ 944 (950)
-|||..+.+| +-+||+|+..+|++.-+||||.|.+||||-|..
T Consensus 622 TRlYrv~~~g~~i~lEPVpl~~tSLDPRf~FlLD~G~~IyiW~G~~ 667 (1255)
T KOG0444|consen 622 TRLYRVGVNGTAIELEPVPLSVTSLDPRFCFLLDAGETIYIWSGYK 667 (1255)
T ss_pred hhhheeccccceeEeeccCccccccCcceEEEEeCCceEEEEeccc
Confidence 3566776444 377899999999999999999999999999975
No 30
>KOG0443|consensus
Probab=66.18 E-value=4.1 Score=50.64 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=34.4
Q ss_pred cceEEec-cCCC---C--cccccccccccCCeEEEEECC-CEEEEEEcCCCC
Q psy13068 902 PVLYSYG-FNGP---P--VPVLLDTSSIKPDCILLMDTF-FQLLIFHGEVSN 946 (950)
Q Consensus 902 P~L~slh-~~g~---P--~~v~LS~esL~~dgIyLLD~g-~~I~IwvG~~V~ 946 (950)
.+||.+. -.|. + -.=+|+.+-|+.+.+||||+| ..||||+|+..+
T Consensus 255 ~kLYkVsd~~g~l~v~~va~~~l~qdlLd~~dCYILD~g~~~IfVW~Gr~as 306 (827)
T KOG0443|consen 255 AKLYKVSDASGGLKVPVVADGPLTKDLLDTEDCYILDCGGGEIFVWKGRQAS 306 (827)
T ss_pred cEEEEEeccCCCccccccccchhhHHhhccCCeEEEecCCceEEEEeCCCCC
Confidence 6888887 2221 1 111288888999999999999 999999999876
No 31
>KOG0444|consensus
Probab=46.87 E-value=16 Score=44.94 Aligned_cols=48 Identities=21% Similarity=0.409 Sum_probs=34.6
Q ss_pred hccccceEEeccC-C--C-Ccc-----cccccccccCCeEEEEECCCEEEEEEcCCC
Q psy13068 898 IMIQPVLYSYGFN-G--P-PVP-----VLLDTSSIKPDCILLMDTFFQLLIFHGEVS 945 (950)
Q Consensus 898 ~~iYP~L~slh~~-g--~-P~~-----v~LS~esL~~dgIyLLD~g~~I~IwvG~~V 945 (950)
.--+|+||.+.+. | + |+. ..|-..-|.+.|+|+||+...||||+|+..
T Consensus 730 ~p~qpkLYkV~lGmGyLELPQvel~P~~~l~q~lL~sk~VyiLDc~sDiF~W~GkKs 786 (1255)
T KOG0444|consen 730 VPEQPKLYKVNLGMGYLELPQVELLPKGILKQDLLGSKGVYILDCNSDIFLWIGKKS 786 (1255)
T ss_pred CCCCcceEEEccccceeecchhhhchhhHHHHHhhcCCeEEEEecCCceEEEecccc
Confidence 4567999999731 2 1 322 123345568899999999999999999874
No 32
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=46.25 E-value=20 Score=37.09 Aligned_cols=37 Identities=8% Similarity=-0.023 Sum_probs=27.9
Q ss_pred ccceEEEEcchh-------hhhh--hcCCCCCCCCCeeeeEeeccc
Q psy13068 332 FLIQFVFFLAIT-------HLIN--QVGSPNLPPLQYEPLLCMRNQ 368 (950)
Q Consensus 332 ~~~~fviD~s~~-------~lk~--~~~l~~Lp~~~~vglit~~~~ 368 (950)
.+++|+||+|.. ..|. ...++.|+++.++||++|++.
T Consensus 14 ~~vv~llD~SgSM~~~~l~~ak~~~~~ll~~l~~~d~v~lv~F~~~ 59 (190)
T cd01463 14 KDIVILLDVSGSMTGQRLHLAKQTVSSILDTLSDNDFFNIITFSNE 59 (190)
T ss_pred ceEEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEEEeCCC
Confidence 456799999882 2333 456778898899999999943
No 33
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=39.31 E-value=32 Score=36.24 Aligned_cols=37 Identities=14% Similarity=0.004 Sum_probs=24.8
Q ss_pred HHHHHHHhhcccEEEEEeccCCCCCchhhhhhhhccCC
Q psy13068 681 EGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNATGK 718 (950)
Q Consensus 681 k~LA~~~~~~gIsVDLF~~s~~~vdlatl~~L~~~TGG 718 (950)
.+.|+++.+.||.|-.+-.+. ..|...|..|++..++
T Consensus 151 ~~~a~~l~~~GI~i~tVGiG~-~~d~~~~~~L~~ias~ 187 (193)
T cd01477 151 RPIAARLKSTGIAIITVAFTQ-DESSNLLDKLGKIASP 187 (193)
T ss_pred HHHHHHHHHCCCEEEEEEeCC-CCCHHHHHHHHHhcCC
Confidence 356778888888887776654 4555556666666554
No 34
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=35.73 E-value=60 Score=33.21 Aligned_cols=47 Identities=11% Similarity=-0.079 Sum_probs=37.1
Q ss_pred HHHHHHHhhcccEEEEEeccCCCCCchhhhhhhhccCCCcEEEEcCCCC
Q psy13068 681 EGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNATGKPSHVLIAIEFA 729 (950)
Q Consensus 681 k~LA~~~~~~gIsVDLF~~s~~~vdlatl~~L~~~TGG~~~v~~y~~F~ 729 (950)
.+++.++.+.||.+..+-+..++.|-..|..|++.||| ..|+-++.+
T Consensus 122 ~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG--~~~~~~d~~ 168 (178)
T cd01451 122 LAAARKLRARGISALVIDTEGRPVRRGLAKDLARALGG--QYVRLPDLS 168 (178)
T ss_pred HHHHHHHHhcCCcEEEEeCCCCccCccHHHHHHHHcCC--eEEEcCcCC
Confidence 56677788889888766666666788899999999999 888776544
No 35
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=34.89 E-value=1.5e+02 Score=29.60 Aligned_cols=33 Identities=9% Similarity=0.038 Sum_probs=25.3
Q ss_pred hcccEEEEEeccCCCCCchhhhhhhhccCCCcEEEE
Q psy13068 689 IVGHAIDIYSCALDQTGLLEMKLCCNATGKPSHVLI 724 (950)
Q Consensus 689 ~~gIsVDLF~~s~~~vdlatl~~L~~~TGG~~~v~~ 724 (950)
+.++.|..+..+. ..|..+|..|+..||| ..|+
T Consensus 121 ~~~v~v~~igig~-~~~~~~l~~iA~~t~G--~~~~ 153 (155)
T cd01466 121 NAPIPIHTFGLGA-SHDPALLAFIAEITGG--TFSY 153 (155)
T ss_pred CCCceEEEEecCC-CCCHHHHHHHHhccCc--eEEE
Confidence 4677777776654 4688999999999999 5554
No 36
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=34.44 E-value=35 Score=33.77 Aligned_cols=35 Identities=9% Similarity=0.045 Sum_probs=28.1
Q ss_pred cceEEEEcchh------hhhh--hcCCCCCCCCCeeeeEeecc
Q psy13068 333 LIQFVFFLAIT------HLIN--QVGSPNLPPLQYEPLLCMRN 367 (950)
Q Consensus 333 ~~~fviD~s~~------~lk~--~~~l~~Lp~~~~vglit~~~ 367 (950)
+++||||+|.. .+|. ...++.|+++.++.|+.|++
T Consensus 2 ~vvilvD~S~Sm~g~~~~~k~al~~~l~~L~~~d~fnii~f~~ 44 (155)
T PF13768_consen 2 DVVILVDTSGSMSGEKELVKDALRAILRSLPPGDRFNIIAFGS 44 (155)
T ss_pred eEEEEEeCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEEeCC
Confidence 57799999982 3344 56778899999999999994
No 37
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=30.83 E-value=57 Score=34.76 Aligned_cols=47 Identities=15% Similarity=0.314 Sum_probs=28.7
Q ss_pred HHHHHHHhhcccEEEEEeccCCCCCchhhhhhhhccCCCcEEEEcCCCCC
Q psy13068 681 EGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNATGKPSHVLIAIEFAQ 730 (950)
Q Consensus 681 k~LA~~~~~~gIsVDLF~~s~~~vdlatl~~L~~~TGG~~~v~~y~~F~~ 730 (950)
++.+.++.+.|| .+|+.+....|..+|..++..+++ ..++.-.+|..
T Consensus 125 ~~~a~~lk~~gv--~i~~VgvG~~~~~~L~~ias~~~~-~~~f~~~~~~~ 171 (224)
T cd01475 125 SEVAAKARALGI--EMFAVGVGRADEEELREIASEPLA-DHVFYVEDFST 171 (224)
T ss_pred HHHHHHHHHCCc--EEEEEeCCcCCHHHHHHHhCCCcH-hcEEEeCCHHH
Confidence 345666666665 455555555678888888876643 05555556654
No 38
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=30.60 E-value=28 Score=36.86 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=26.2
Q ss_pred cceeecccceEEEEcch-------hhhhh--hcCCCCCCCC------CeeeeEeec
Q psy13068 326 LPVFLPFLIQFVFFLAI-------THLIN--QVGSPNLPPL------QYEPLLCMR 366 (950)
Q Consensus 326 ~pv~l~~~~~fviD~s~-------~~lk~--~~~l~~Lp~~------~~vglit~~ 366 (950)
.|+| |++|+|- ++++. +..++.|..+ .++++||||
T Consensus 4 lP~~------lllDtSgSM~Ge~IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~ 53 (207)
T COG4245 4 LPCY------LLLDTSGSMIGEPIEALNAGLQMMIDTLKQDPYALERVELSIVTFG 53 (207)
T ss_pred CCEE------EEEecCcccccccHHHHHHHHHHHHHHHHhChhhhheeEEEEEEec
Confidence 3777 6999998 33443 6667777655 899999999
No 39
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=27.92 E-value=29 Score=25.42 Aligned_cols=17 Identities=18% Similarity=0.106 Sum_probs=13.7
Q ss_pred cCceeccccccccCCCc
Q psy13068 83 EALWLKSIFFQAEDGIR 99 (950)
Q Consensus 83 ~~~w~c~~c~~~n~~~~ 99 (950)
.+.|.|+.|...|....
T Consensus 2 ~g~W~C~~C~~~N~~~~ 18 (30)
T PF00641_consen 2 EGDWKCPSCTFMNPASR 18 (30)
T ss_dssp SSSEEETTTTEEEESSS
T ss_pred CcCccCCCCcCCchHHh
Confidence 56899999999997443
No 40
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=25.70 E-value=44 Score=28.39 Aligned_cols=34 Identities=18% Similarity=0.450 Sum_probs=26.1
Q ss_pred cccccccccccceeeccceEeCCCCeeEecCCCCCC
Q psy13068 248 EPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRN 283 (950)
Q Consensus 248 ~p~rC~~~~C~aylNP~~~~d~~g~~w~C~~C~~~N 283 (950)
-++-|++ |+..-...-+-+...-.|+|+.|+..|
T Consensus 21 ~aLIC~~--C~~hNGla~~~~~~~i~y~C~~Cg~~N 54 (54)
T PF10058_consen 21 YALICSK--CFSHNGLAPKEEFEEIQYRCPYCGALN 54 (54)
T ss_pred eeEECcc--cchhhcccccccCCceEEEcCCCCCcC
Confidence 3567988 887766554666677799999999876
No 41
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=25.05 E-value=95 Score=32.28 Aligned_cols=39 Identities=10% Similarity=0.018 Sum_probs=32.0
Q ss_pred HHHHHHHhhcccEEEEEeccCCCCCchhhhhhhhccCCCcEEEE
Q psy13068 681 EGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNATGKPSHVLI 724 (950)
Q Consensus 681 k~LA~~~~~~gIsVDLF~~s~~~vdlatl~~L~~~TGG~~~v~~ 724 (950)
.++++.+.+.+|.|++..++. ++..|..+|+.||| ..|.
T Consensus 126 ~~~~~~l~~~~I~v~~IgiG~---~~~~L~~ia~~tgG--~~~~ 164 (183)
T cd01453 126 YETIDKLKKENIRVSVIGLSA---EMHICKEICKATNG--TYKV 164 (183)
T ss_pred HHHHHHHHHcCcEEEEEEech---HHHHHHHHHHHhCC--eeEe
Confidence 457888888999999998864 56789999999999 6554
No 42
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=24.38 E-value=98 Score=30.90 Aligned_cols=31 Identities=10% Similarity=0.190 Sum_probs=21.5
Q ss_pred HHhhcccEEEEEeccCCCCCchhhhhhhhccCC
Q psy13068 686 RAAIVGHAIDIYSCALDQTGLLEMKLCCNATGK 718 (950)
Q Consensus 686 ~~~~~gIsVDLF~~s~~~vdlatl~~L~~~TGG 718 (950)
++.+.||. +|..+....|...|..++..++|
T Consensus 125 ~l~~~gv~--i~~ig~g~~~~~~L~~ia~~~~~ 155 (164)
T cd01472 125 ELKQAGIE--VFAVGVKNADEEELKQIASDPKE 155 (164)
T ss_pred HHHHCCCE--EEEEECCcCCHHHHHHHHCCCch
Confidence 44456665 44444444499999999999987
No 43
>PF14692 DUF4462: Domain of unknown function (DUF4462)
Probab=23.51 E-value=32 Score=25.42 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=10.9
Q ss_pred eEEeecccCCchh
Q psy13068 17 IRCTWNVWPSSKL 29 (950)
Q Consensus 17 ~r~~wn~~p~s~~ 29 (950)
-||+||-+|...+
T Consensus 4 sr~~WN~LpRag~ 16 (28)
T PF14692_consen 4 SRFNWNWLPRAGS 16 (28)
T ss_pred cccccccCccccc
Confidence 3899999998766
No 44
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=23.47 E-value=1.8e+02 Score=31.12 Aligned_cols=34 Identities=18% Similarity=0.117 Sum_probs=28.8
Q ss_pred HHHHHHhhcccEEEEEeccCCCCCchhhhhhhhccCC
Q psy13068 682 GLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNATGK 718 (950)
Q Consensus 682 ~LA~~~~~~gIsVDLF~~s~~~vdlatl~~L~~~TGG 718 (950)
+..+.+.+.+|-|++..++. .+.-.+.+|+.|||
T Consensus 121 ~ti~~l~~~~IrvsvI~laa---Ev~I~k~i~~~T~G 154 (193)
T PF04056_consen 121 ETIESLKKENIRVSVISLAA---EVYICKKICKETGG 154 (193)
T ss_pred HHHHHHHHcCCEEEEEEEhH---HHHHHHHHHHhhCC
Confidence 56668889999999998765 56678999999999
No 45
>KOG2884|consensus
Probab=23.38 E-value=1.4e+02 Score=32.57 Aligned_cols=38 Identities=21% Similarity=0.055 Sum_probs=28.1
Q ss_pred HHHHHHHhhcccEEEEEeccCCCCCchhhhhhhhccCC
Q psy13068 681 EGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNATGK 718 (950)
Q Consensus 681 k~LA~~~~~~gIsVDLF~~s~~~vdlatl~~L~~~TGG 718 (950)
-++|+++-+.+++||+..|+-..-+-.-+......+.|
T Consensus 126 v~~akrlkk~~Vaidii~FGE~~~~~e~l~~fida~N~ 163 (259)
T KOG2884|consen 126 VKLAKRLKKNKVAIDIINFGEAENNTEKLFEFIDALNG 163 (259)
T ss_pred HHHHHHHHhcCeeEEEEEeccccccHHHHHHHHHHhcC
Confidence 47899999999999999998766654444555555544
No 46
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=23.08 E-value=1e+02 Score=31.51 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=27.2
Q ss_pred HHHHHhhcccEEEEEeccCCC---CCchhhhhhhhccCCCcEEEEcCCCC
Q psy13068 683 LALRAAIVGHAIDIYSCALDQ---TGLLEMKLCCNATGKPSHVLIAIEFA 729 (950)
Q Consensus 683 LA~~~~~~gIsVDLF~~s~~~---vdlatl~~L~~~TGG~~~v~~y~~F~ 729 (950)
.+..+.+.|+.|-.+..+.++ .+..+|..++..+++ .++|.-.+|+
T Consensus 124 ~~~~~k~~gv~v~~Vgvg~~~~~~~~~~~L~~ias~p~~-~h~f~~~~~~ 172 (177)
T cd01469 124 VIPQAEREGIIRYAIGVGGHFQRENSREELKTIASKPPE-EHFFNVTDFA 172 (177)
T ss_pred HHHHHHHCCcEEEEEEecccccccccHHHHHHHhcCCcH-HhEEEecCHH
Confidence 444555567755555544432 347889999988864 1455455554
No 47
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=22.62 E-value=53 Score=33.90 Aligned_cols=43 Identities=14% Similarity=-0.015 Sum_probs=0.0
Q ss_pred cccceEEEEcch-------hhhhh--hcCCCCC---------CCCCeeeeEeeccccceEE
Q psy13068 331 PFLIQFVFFLAI-------THLIN--QVGSPNL---------PPLQYEPLLCMRNQCRAIL 373 (950)
Q Consensus 331 ~~~~~fviD~s~-------~~lk~--~~~l~~L---------p~~~~vglit~~~~~s~v~ 373 (950)
+.-++|++|+|. +..|. ...++.| |+..+||+|+|+++...+.
T Consensus 2 ~~dvv~vlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~~~~ 62 (186)
T cd01480 2 PVDITFVLDSSESVGLQNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEVEA 62 (186)
T ss_pred CeeEEEEEeCCCccchhhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCceeeE
No 48
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=21.58 E-value=71 Score=25.75 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=21.6
Q ss_pred ccccccccccceeeccceEeCCCCeeEecCCCCCCC
Q psy13068 249 PLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNA 284 (950)
Q Consensus 249 p~rC~~~~C~aylNP~~~~d~~g~~w~C~~C~~~N~ 284 (950)
.++|.. |++-+. ++.....+.|+.|+..-.
T Consensus 3 ~y~C~~--CG~~~~----~~~~~~~~~Cp~CG~~~~ 32 (46)
T PRK00398 3 EYKCAR--CGREVE----LDEYGTGVRCPYCGYRIL 32 (46)
T ss_pred EEECCC--CCCEEE----ECCCCCceECCCCCCeEE
Confidence 478988 999654 344444899999997554
No 49
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=20.84 E-value=1.2e+02 Score=30.41 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=24.5
Q ss_pred HHHHHHHhhcccEEEEEeccCCCCCchhhhhhhhccCC
Q psy13068 681 EGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNATGK 718 (950)
Q Consensus 681 k~LA~~~~~~gIsVDLF~~s~~~vdlatl~~L~~~TGG 718 (950)
++.|.++.+.|| .+|+.+.+..+...|..++..+.+
T Consensus 120 ~~~a~~lk~~gi--~i~~ig~g~~~~~~L~~ia~~~~~ 155 (164)
T cd01482 120 ELPARVLRNLGV--NVFAVGVKDADESELKMIASKPSE 155 (164)
T ss_pred HHHHHHHHHCCC--EEEEEecCcCCHHHHHHHhCCCch
Confidence 355667766676 556556555678888888888654
No 50
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=20.31 E-value=68 Score=32.06 Aligned_cols=34 Identities=6% Similarity=0.001 Sum_probs=25.0
Q ss_pred ceEEEEcchh-------hhhh--hcCCCCCCCCCeeeeEeecc
Q psy13068 334 IQFVFFLAIT-------HLIN--QVGSPNLPPLQYEPLLCMRN 367 (950)
Q Consensus 334 ~~fviD~s~~-------~lk~--~~~l~~Lp~~~~vglit~~~ 367 (950)
++|+||+|.. ..|. ...++.|++..++||++|++
T Consensus 3 v~~vlD~S~SM~~~rl~~ak~a~~~l~~~l~~~~~~~li~F~~ 45 (155)
T cd01466 3 LVAVLDVSGSMAGDKLQLVKHALRFVISSLGDADRLSIVTFST 45 (155)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcceEEEEEecC
Confidence 4599999882 1233 34567888888999999993
Done!