RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13068
(950 letters)
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed
with SEC22, protein transport; 2.30A {Homo sapiens} PDB:
2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Length = 769
Score = 208 bits (529), Expect = 2e-56
Identities = 139/201 (69%), Positives = 168/201 (83%)
Query: 743 STTAAHGAPIPQGGRGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEA 802
H APIPQGGRG IQF+T YQ SG++++RVTTIARNWADA TQ+ +I++ FDQEA
Sbjct: 466 EVVNQHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEA 525
Query: 803 AAVIMGRMVVNRAEQDDGPDVMRWADRTLIRLCQKFGHYNKDDPHSFQLPENFQMYPQFM 862
AA++M R+ + RAE ++GPDV+RW DR LIRLCQKFG Y+KDDP SF+ E F +YPQFM
Sbjct: 526 AAILMARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFM 585
Query: 863 YHLRRSQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSS 922
+HLRRS FLQVFNNSPDE+SYYRH MR+DL+QSLIMIQP+LY+Y F+GPP PVLLD+SS
Sbjct: 586 FHLRRSSFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSS 645
Query: 923 IKPDCILLMDTFFQLLIFHGE 943
I D ILLMDTFFQ+LI+HGE
Sbjct: 646 ILADRILLMDTFFQILIYHGE 666
Score = 166 bits (420), Expect = 1e-42
Identities = 86/129 (66%), Positives = 105/129 (81%)
Query: 191 SMTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPL 250
MTTY EF QNEERDG+R +WNVWPSS+LEA+R+V+PV L+ PLKE+PDLPP+QYEP+
Sbjct: 4 GMTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPV 63
Query: 251 LCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEY 310
LC R CRA+LNPLCQVDY++KLW CNFC+QRN FPP YA I+E +QPAEL PQF++IEY
Sbjct: 64 LCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEY 123
Query: 311 TIPVSQCFP 319
+ P
Sbjct: 124 VVLRGPQMP 132
Score = 114 bits (286), Expect = 3e-26
Identities = 88/210 (41%), Positives = 115/210 (54%), Gaps = 36/210 (17%)
Query: 464 DDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERETKMEEECQKFG 523
+ + + DQE + E+ D + + ++ CQKFG
Sbjct: 510 AQTQIQNIAASFDQEAAAILMARLAIYRAETEEGPD-------VLRWLDRQLIRLCQKFG 562
Query: 524 HYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRTLLIHLPHYSRFQF 583
Y+KDDP SF+ E F +YPQFM+HLRRS FLQVFNNSPDE+SY
Sbjct: 563 EYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQVFNNSPDESSY---------------- 606
Query: 584 LQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDCILL 643
YRH MR+DL+QSLIMIQP+LY+Y F+GPP PVLLD+SSI D ILL
Sbjct: 607 -------------YRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADRILL 653
Query: 644 MDTFFQLLIFHGEEPIRSHNDIHKGNNKYQ 673
MDTFFQ+LI+HGE + ++ +Y+
Sbjct: 654 MDTFFQILIYHGETIAQWRKSGYQDMPEYE 683
Score = 108 bits (271), Expect = 2e-24
Identities = 54/75 (72%), Positives = 65/75 (86%)
Query: 1 MTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLL 60
MTTY EF QNEERDG+R +WNVWPSS+LEA+R+V+PV L+ PLKE+PDLPP+QYEP+L
Sbjct: 5 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVL 64
Query: 61 CMRNQCRAILNPLCQ 75
C R CRA+LNPLCQ
Sbjct: 65 CSRTTCRAVLNPLCQ 79
Score = 93.8 bits (232), Expect = 1e-19
Identities = 51/74 (68%), Positives = 63/74 (85%)
Query: 352 PNLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPA 411
P+LPP+QYEP+LC R CRA+LNPLCQVDY++KLW CNFC+QRN FPP YA I+E +QPA
Sbjct: 53 PDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPA 112
Query: 412 ELHPQFTTIEYTIP 425
EL PQF++IEY +
Sbjct: 113 ELLPQFSSIEYVVL 126
Score = 59.2 bits (142), Expect = 5e-09
Identities = 42/62 (67%), Positives = 46/62 (74%)
Query: 656 EEPIRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNA 715
+ PIRS +DI K N KY K TKH+E LA RAA GH IDIY+CALDQTGLLEMK C N
Sbjct: 311 KTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNL 370
Query: 716 TG 717
TG
Sbjct: 371 TG 372
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1
c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Length = 768
Score = 195 bits (496), Expect = 3e-52
Identities = 114/220 (51%), Positives = 144/220 (65%), Gaps = 7/220 (3%)
Query: 724 IAIEFAQPSPMLKAQKRLGSTTAAHGAPIPQGGRGCIQFITHYQAPSGEKKVRVTTIARN 783
AI F + + + + QFIT YQ SG ++RVTT+A
Sbjct: 456 YAIFFE-----IANTAANSNPMMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQ 510
Query: 784 WADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLIRLCQKFGHYNK 843
I++ FDQEAAAV+M R+ V++AE DDG DV+RW DRTLI+LCQK+ YNK
Sbjct: 511 LLP--FGTPAIAASFDQEAAAVLMARIAVHKAETDDGADVIRWLDRTLIKLCQKYADYNK 568
Query: 844 DDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPV 903
DDP SF+L NF +YPQF Y+LRRSQFL VFNNSPDET++YRH+ RED + SLIMIQP
Sbjct: 569 DDPQSFRLAPNFSLYPQFTYYLRRSQFLSVFNNSPDETAFYRHIFTREDTTNSLIMIQPT 628
Query: 904 LYSYGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGE 943
L S+ P PVLLD+ S+KP+ ILL+DTFF +LI+HGE
Sbjct: 629 LTSFSMEDDPQPVLLDSISVKPNTILLLDTFFFILIYHGE 668
Score = 132 bits (333), Expect = 6e-32
Identities = 53/121 (43%), Positives = 75/121 (61%), Gaps = 2/121 (1%)
Query: 199 FYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCR 258
F NE+ +G+R TWNV+PS++ +A+ V+PVGCLY PLKE +L Y P++C C+
Sbjct: 3 FETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPYNPVVCSGPHCK 62
Query: 259 AILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPVSQCF 318
+ILNP C +D ++ W C C RN PPQY +++++ P EL Q TTIEY
Sbjct: 63 SILNPYCVIDPRNSSWSCPICNSRNHLPPQYTNLSQENMPLEL--QSTTIEYITNKPVTV 120
Query: 319 P 319
P
Sbjct: 121 P 121
Score = 117 bits (292), Expect = 6e-27
Identities = 73/174 (41%), Positives = 100/174 (57%), Gaps = 29/174 (16%)
Query: 500 QEDGNEEIEDERETKMEEECQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFN 559
+ D ++ + + + CQK+ YNKDDP SF+L NF +YPQF Y+LRRSQFL VFN
Sbjct: 541 ETDDGADVIRWLDRTLIKLCQKYADYNKDDPQSFRLAPNFSLYPQFTYYLRRSQFLSVFN 600
Query: 560 NSPDETSYYRTLLIHLPHYSRFQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYS 619
NSPDET ++YRH+ RED + SLIMIQP L S
Sbjct: 601 NSPDET-----------------------------AFYRHIFTREDTTNSLIMIQPTLTS 631
Query: 620 YGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEEPIRSHNDIHKGNNKYQ 673
+ P PVLLD+ S+KP+ ILL+DTFF +LI+HGE+ + ++ + +Y
Sbjct: 632 FSMEDDPQPVLLDSISVKPNTILLLDTFFFILIYHGEQIAQWRKAGYQDDPQYA 685
Score = 87.4 bits (215), Expect = 1e-17
Identities = 33/68 (48%), Positives = 47/68 (69%)
Query: 8 FYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCR 67
F NE+ +G+R TWNV+PS++ +A+ V+PVGCLY PLKE +L Y P++C C+
Sbjct: 3 FETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPYNPVVCSGPHCK 62
Query: 68 AILNPLCQ 75
+ILNP C
Sbjct: 63 SILNPYCV 70
Score = 78.9 bits (193), Expect = 4e-15
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 6/116 (5%)
Query: 313 PVSQCFPKY---PLRSLPVFLPFLIQFVFFLAITHLINQVGSPNLPPLQYEPLLCMRNQC 369
+ P V + + + L Y P++C C
Sbjct: 3 FETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKE-YDELNVAPYNPVVCSGPHC 61
Query: 370 RAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIP 425
++ILNP C +D ++ W C C RN PPQY +++++ P EL Q TTIEY
Sbjct: 62 KSILNPYCVIDPRNSSWSCPICNSRNHLPPQYTNLSQENMPLEL--QSTTIEYITN 115
Score = 59.7 bits (143), Expect = 4e-09
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 656 EEPIRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNA 715
++P+RSH+DI + ++ K A K Y +A R A GH +DI++ DQ G+ EMK ++
Sbjct: 305 KDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDS 364
Query: 716 TG 717
TG
Sbjct: 365 TG 366
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 176 bits (448), Expect = 1e-45
Identities = 45/357 (12%), Positives = 92/357 (25%), Gaps = 78/357 (21%)
Query: 660 RSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIY------------SCALDQTG-- 705
+ K + Y+ + + V +D++ S T
Sbjct: 463 SGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQ 522
Query: 706 ------------------------LLEMKLCCNATGKPS------------HVLIAIEFA 729
+ M C + H
Sbjct: 523 THFYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFNRSSDL 582
Query: 730 QPSPMLKAQKRLGSTTAAHGAPIPQGGRGCIQFITHYQAPSGEKKVRVTTIARNWADATT 789
+ + + +Q + ++++R+ T+A T
Sbjct: 583 CAFSTMPRDQSYLFEVNVDESI--MADYCYVQVAVLLSLNNSQRRIRIITLAMPT---TE 637
Query: 790 QLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVMRWADRT----LIRLCQKFGHYNKDD 845
L + + DQ A A V +A D +++ L ++ N
Sbjct: 638 SLAEVYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNTAG 697
Query: 846 PHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLY 905
+L N +M+P M+ L + + D + + L L + I P +Y
Sbjct: 698 GAPLRLCANLRMFPLLMHSLTKHMAFRSGIVPSDHRASALNNLESLPLKYLIKNIYPDVY 757
Query: 906 S-------------------YGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGE 943
S G P P+ +S + + L+D +L ++ G
Sbjct: 758 SLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGG 814
Score = 106 bits (264), Expect = 2e-23
Identities = 33/146 (22%), Positives = 51/146 (34%), Gaps = 7/146 (4%)
Query: 192 MTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPD---LPPLQYE 248
N D IR T N P + + +P G + +P + D PPL +
Sbjct: 166 ERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNED 225
Query: 249 PLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHP---QF 305
L+ +CR+ +NP + + W CNFC N P Q + +
Sbjct: 226 GLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIKC 285
Query: 306 TTIEYTIPVSQCFPKYPLRSLPVFLP 331
+EY P + P + FL
Sbjct: 286 AVMEYMAPKEYTLRQ-PPPATYCFLI 310
Score = 93.0 bits (230), Expect = 2e-19
Identities = 22/157 (14%), Positives = 42/157 (26%), Gaps = 48/157 (30%)
Query: 519 CQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRTLLIHLPHY 578
++ N +L N +M+P M+ L +
Sbjct: 687 KKEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKH-------------------------- 720
Query: 579 SRFQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYS------------------- 619
+ D + + L L + I P +YS
Sbjct: 721 ---MAFRSGIVPSDHRASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEA 777
Query: 620 YGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGE 656
G P P+ +S + + L+D +L ++ G
Sbjct: 778 TGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGG 814
Score = 74.5 bits (182), Expect = 1e-13
Identities = 31/153 (20%), Positives = 47/153 (30%), Gaps = 9/153 (5%)
Query: 280 FQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPVSQCFPKYPLRSLPVFLPFLIQFVFF 339
PP I + + +Y PK LPF
Sbjct: 151 ITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPF------G 204
Query: 340 LAITHLINQVGSPNLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPP 399
L I + + PPL + L+ +CR+ +NP + + W CNFC N P
Sbjct: 205 LVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPM 264
Query: 400 QYAAITEQHQPAELHP---QFTTIEYTIPLLYS 429
Q + + +EY P Y+
Sbjct: 265 QMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYT 297
Score = 61.8 bits (149), Expect = 8e-10
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Query: 1 MTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPD---LPPLQYE 57
N D IR T N P + + +P G + +P + D PPL +
Sbjct: 166 ERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNED 225
Query: 58 PLLCMRNQCRAILNPLCQ 75
L+ +CR+ +NP
Sbjct: 226 GLIVRCRRCRSYMNPFVT 243
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport
signal, disease mutation, endoplasmic reticulum,
ER-golgi transport, golgi apparatus, membrane; 2.70A
{Homo sapiens} PDB: 3eg9_B
Length = 770
Score = 163 bits (413), Expect = 1e-41
Identities = 46/340 (13%), Positives = 94/340 (27%), Gaps = 58/340 (17%)
Query: 666 HKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNATG-------- 717
+ T Y+ LA G ++ ++ + + L TG
Sbjct: 342 TDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNN 401
Query: 718 -------------------KPSHVLIAIEFAQPSPMLKA----QKRLGSTTAAHGAPIPQ 754
K + + + +TT A I
Sbjct: 402 FQMHLDRQQFLNDLRNDIEKKIGFDAIMRVRTSTGFRATDFFGGILMNNTTDVEMAAIDC 461
Query: 755 GGRGCIQF----------------ITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGF 798
++F Y SG++++R+ + N ++QL +
Sbjct: 462 DKAVTVEFKHDDKLSEDSGALIQCAVLYTTISGQRRLRIHNLGLNC---SSQLADLYKSC 518
Query: 799 DQEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLIRL--CQKFGHYNKDDPHSFQLPENFQ 856
+ +A + + + C + + LP++ +
Sbjct: 519 ETDALINFFAKSAFKAVLHQPLKVIREILVNQTAHMLACYRKNCASPSAASQLILPDSMK 578
Query: 857 MYPQFMY-HLRRSQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSY-----GFN 910
+ P +M L+ L S DE +Y R ++M ++ S + P L
Sbjct: 579 VLPVYMNCLLKNCVLLSRPEISTDERAYQRQLVMTMGVADSQLFFYPQLLPIHTLDVKST 638
Query: 911 GPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEVSNARRI 950
P V S + + I L+ + ++ G S I
Sbjct: 639 MLPAAVRCSESRLSEEGIFLLANGLHMFLWLGVSSPPELI 678
Score = 99 bits (248), Expect = 1e-21
Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 20/147 (13%)
Query: 191 SMTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPD-------LP 243
T N IRCT +P + A + +P+ + +P P +
Sbjct: 33 VTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVN 92
Query: 244 PLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQ------ 297
+ P+ C R C+A + P Q + + C FC N PP Y +
Sbjct: 93 HGESGPVRCNR--CKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDHY 150
Query: 298 -----PAELHPQFTTIEYTIPVSQCFP 319
+ T++Y P
Sbjct: 151 EKPELSLGSYEYVATLDYCRKSKPPNP 177
Score = 86.8 bits (214), Expect = 1e-17
Identities = 22/143 (15%), Positives = 43/143 (30%), Gaps = 33/143 (23%)
Query: 519 CQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRTLLIHLPHY 578
C + + LP++ ++ P +M L ++
Sbjct: 557 CYRKNCASPSAASQLILPDSMKVLPVYMNCLLKNC------------------------- 591
Query: 579 SRFQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSY-----GFNGPPVPVLLDT 633
L S DE +Y R ++M ++ S + P L P V
Sbjct: 592 ---VLLSRPEISTDERAYQRQLVMTMGVADSQLFFYPQLLPIHTLDVKSTMLPAAVRCSE 648
Query: 634 SSIKPDCILLMDTFFQLLIFHGE 656
S + + I L+ + ++ G
Sbjct: 649 SRLSEEGIFLLANGLHMFLWLGV 671
Score = 67.6 bits (164), Expect = 1e-11
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 2 TTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPD-------LPPL 54
T N IRCT +P + A + +P+ + +P P +
Sbjct: 35 TDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHG 94
Query: 55 QYEPLLCMRNQCRAILNPLCQ 75
+ P+ C R C+A + P Q
Sbjct: 95 ESGPVRCNR--CKAYMCPFMQ 113
Score = 56.4 bits (135), Expect = 4e-08
Identities = 26/149 (17%), Positives = 42/149 (28%), Gaps = 22/149 (14%)
Query: 297 QPAELHPQFTTIEYTIPVSQCFPKY---PLRSLPVFLPFLIQFVFFLAI------THLIN 347
++ P TT P++ P Q LA T N
Sbjct: 25 TRGQIPPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSN 84
Query: 348 QVGSPNLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQ 407
+ + + P+ C R C+A + P Q + + C FC N PP Y +
Sbjct: 85 ESPLYLVNHGESGPVRCNR--CKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDH 142
Query: 408 HQ-----------PAELHPQFTTIEYTIP 425
+ T++Y
Sbjct: 143 IGRRLDHYEKPELSLGSYEYVATLDYCRK 171
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle
transport, cytoplasm, endoplasmic reticulum, ER-golgi
transport, golgi apparatus; 2.35A {Homo sapiens}
Length = 766
Score = 156 bits (394), Expect = 2e-39
Identities = 34/215 (15%), Positives = 74/215 (34%), Gaps = 17/215 (7%)
Query: 747 AHGAPIPQGGRGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVI 806
H + + +Q Y + +G++++R+ +A N TQL + + +
Sbjct: 466 KHDDRLNEESGALLQCALLYTSCAGQRRLRIHNLALNC---CTQLADLYRNCETDTLINY 522
Query: 807 MGRMVVNRAEQDDGPDVMRWADRTLIRLCQKFGHYNKD-----DPHSFQLPENFQMYPQF 861
M + D + + Q Y K+ LPE ++ P +
Sbjct: 523 MAKFAYRGVLNSPVKA---VRDTLITQCAQILACYRKNCASPSSAGQLILPECMKLLPVY 579
Query: 862 MYHLRRSQFLQVFNN-SPDETSYYRHVLMREDLSQSLIMIQPVLYSY-----GFNGPPVP 915
+ + +S LQ + D+ +Y R ++ D++++ + P L P
Sbjct: 580 LNCVLKSDVLQPGAEVTTDDRAYVRQLVTSMDVTETNVFFYPRLLPLTKSPVESTTEPPA 639
Query: 916 VLLDTSSIKPDCILLMDTFFQLLIFHGEVSNARRI 950
V + I L++ L ++ G +
Sbjct: 640 VRASEERLSNGDIYLLENGLNLFLWVGASVQQGVV 674
Score = 96.5 bits (239), Expect = 1e-20
Identities = 33/149 (22%), Positives = 50/149 (33%), Gaps = 20/149 (13%)
Query: 193 TTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPL------- 245
T + N IRCT P + A + +P+ + +PL P
Sbjct: 31 TNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHG 90
Query: 246 QYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQ-------HQP 298
+ PL C R C+A + P Q + + C FC N PPQY + +
Sbjct: 91 ESGPLRCNR--CKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDR 148
Query: 299 AELH----PQFTTIEYTIPVSQCFPKYPL 323
EL T++Y P +
Sbjct: 149 PELSLGSYEFLATVDYCKNNKFPSPPAFI 177
Score = 86.5 bits (213), Expect = 2e-17
Identities = 25/165 (15%), Positives = 52/165 (31%), Gaps = 38/165 (23%)
Query: 504 NEEIEDERETKMEEECQKFGHYNKD-----DPHSFQLPENFQMYPQFMYHLRRSQFLQVF 558
N ++ R+T + + Q Y K+ LPE ++ P ++ + +S LQ
Sbjct: 533 NSPVKAVRDTLITQCAQILACYRKNCASPSSAGQLILPECMKLLPVYLNCVLKSDVLQPG 592
Query: 559 NNSPDETSYYRTLLIHLPHYSRFQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLY 618
+ D+ +Y R ++ D++++ + P L
Sbjct: 593 AEV----------------------------TTDDRAYVRQLVTSMDVTETNVFFYPRLL 624
Query: 619 SY-----GFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEEP 658
P V + I L++ L ++ G
Sbjct: 625 PLTKSPVESTTEPPAVRASEERLSNGDIYLLENGLNLFLWVGASV 669
Score = 64.5 bits (156), Expect = 1e-10
Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 2 TTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPL------- 54
T + N IRCT P + A + +P+ + +PL P
Sbjct: 31 TNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHG 90
Query: 55 QYEPLLCMRNQCRAILNPLCQ 75
+ PL C R C+A + P Q
Sbjct: 91 ESGPLRCNR--CKAYMCPFMQ 109
Score = 55.3 bits (132), Expect = 9e-08
Identities = 32/165 (19%), Positives = 49/165 (29%), Gaps = 26/165 (15%)
Query: 281 QRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPVSQCFPKY---PLRSLPVFLPFLIQFV 337
+ N + P P TT P+Y ++P Q
Sbjct: 9 RNNRGTEPFVTGVRGQVP----PLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQ 64
Query: 338 FFLAIT-HLINQVGSPNLPPL-----QYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFC 391
LA + ++ P + PL C R C+A + P Q + + C FC
Sbjct: 65 VPLAAVIKPLARLPPEEASPYVVDHGESGPLRCNR--CKAYMCPFMQFIEGGRRFQCCFC 122
Query: 392 FQRNAFPPQYAAITEQ-------HQPAELH----PQFTTIEYTIP 425
N PPQY + + EL T++Y
Sbjct: 123 SCINDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDYCKN 167
Score = 41.8 bits (97), Expect = 0.001
Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 656 EEPIRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNA 715
+ I + + + T Y+ LA G +D++ + + +
Sbjct: 333 RKLINTDKE-----KTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQL 387
Query: 716 TG 717
TG
Sbjct: 388 TG 389
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae}
SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB:
1pd0_A 1pd1_A
Length = 810
Score = 156 bits (395), Expect = 2e-39
Identities = 42/360 (11%), Positives = 93/360 (25%), Gaps = 74/360 (20%)
Query: 660 RSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNATGKP 719
+ K + Y+ + + V +D++ + D + + T
Sbjct: 347 SGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQ 406
Query: 720 SHV---LIAIEFAQPSPMLKAQKRLGSTTAAHGAPI------------------------ 752
+H + S +
Sbjct: 407 THFYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFNRSSDL 466
Query: 753 ---------------------PQGGRGCIQFITHYQAPSGEKKVRVTTIARNWADATTQL 791
+Q + ++++R+ T+ T L
Sbjct: 467 CAFSTMPRDQSYLFEVNVDESIMADYCYVQVAVLLSLNNSQRRIRIITL---AMPTTESL 523
Query: 792 DHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLIRL----CQKFGHYNKDDPH 847
+ + DQ A A V +A D ++++ + ++ N
Sbjct: 524 AEVYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNTAGGA 583
Query: 848 SFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYS- 906
+L N +M+P M+ L + + D + + L L + I P +YS
Sbjct: 584 PLRLCANLRMFPLLMHSLTKHMAFRSGIVPSDHRASALNNLESLPLKYLIKNIYPDVYSL 643
Query: 907 ------------------YGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEVSNAR 948
G P P+ +S + + L+D +L ++ G +
Sbjct: 644 HDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGDAVPA 703
Score = 96.6 bits (239), Expect = 1e-20
Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 8/135 (5%)
Query: 193 TTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPD---LPPLQYEP 249
N D IR T N P + + +P G + +P + D PPL +
Sbjct: 51 RMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDG 110
Query: 250 LLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHP----QF 305
L+ +CR+ +NP + + W CNFC N P Q + + P + +
Sbjct: 111 LIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMDQS-DPNDPKSRYDRNEIKC 169
Query: 306 TTIEYTIPVSQCFPK 320
+EY P +
Sbjct: 170 AVMEYMAPKEYTLRQ 184
Score = 80.4 bits (197), Expect = 1e-15
Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 10/161 (6%)
Query: 497 EEDQEDGNEEIEDERETKMEEECQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQ 556
+D I + + ++ N +L N +M+P M+ L + +
Sbjct: 549 NSSLDDARVLINKSVQDILATYKKEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFR 608
Query: 557 VFNNSPDETSYYRTLLIHLPHYSRFQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPV 616
D + L LP + + P Y H + E L +
Sbjct: 609 SGIVPSDHRASALNNLESLPLKYLIKNIY-----P--DVYSLHDMADEA---GLPVQTED 658
Query: 617 LYSYGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEE 657
+ G P P+ +S + + L+D +L ++ G +
Sbjct: 659 GEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGD 699
Score = 63.9 bits (154), Expect = 2e-10
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 2 TTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPD---LPPLQYEP 58
N D IR T N P + + +P G + +P + D PPL +
Sbjct: 51 RMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDG 110
Query: 59 LLCMRNQCRAILNPLCQ 75
L+ +CR+ +NP
Sbjct: 111 LIVRCRRCRSYMNPFVT 127
Score = 61.6 bits (148), Expect = 1e-09
Identities = 30/143 (20%), Positives = 50/143 (34%), Gaps = 10/143 (6%)
Query: 296 HQPAELHPQFTTIEYTIPVSQCFPKY---PLRSLPVFLPFLIQFVFFLA--ITHLINQVG 350
P L + +S P Y L ++P L + I +
Sbjct: 40 LPPPPLVIPPERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYD 99
Query: 351 SPNLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQP 410
+ PPL + L+ +CR+ +NP + + W CNFC N P Q + + P
Sbjct: 100 DIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMDQS-DPNDP 158
Query: 411 AELHP----QFTTIEYTIPLLYS 429
+ + +EY P Y+
Sbjct: 159 KSRYDRNEIKCAVMEYMAPKEYT 181
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle
transport, transport signal sequence, cytoplasm,
endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B
2nup_B 3egd_B 3egx_B
Length = 751
Score = 147 bits (371), Expect = 1e-36
Identities = 39/216 (18%), Positives = 75/216 (34%), Gaps = 18/216 (8%)
Query: 748 HGAPIPQGGRGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIM 807
+ C Q Y + GE+++RV T+ + L + +G D +AA ++
Sbjct: 449 IEESLTDTSLVCFQTALLYTSSKGERRIRVHTLCLPV---VSSLADVYAGVDVQAAICLL 505
Query: 808 GRMVVNRAEQDDGPDVMRWADRTLIRLCQKFGHYNKDDPHS-FQLPENFQMYPQFMYHLR 866
M V+R+ D ++ +G + HS P + +++P ++ L
Sbjct: 506 ANMAVDRSVSSSLSDARDALVNAVVDSLSAYGSTVSNLQHSALMAPSSLKLFPLYVLALL 565
Query: 867 RSQ-FLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSY-------------GFNGP 912
+ + F + D+ Y + + L + MI P LY
Sbjct: 566 KQKAFRTGTSTRLDDRVYAMCQIKSQPLVHLMKMIHPNLYRIDRLTDEGAVHVNDRIVPQ 625
Query: 913 PVPVLLDTSSIKPDCILLMDTFFQLLIFHGEVSNAR 948
P L + + LMD I+ G+ +
Sbjct: 626 PPLQKLSAEKLTREGAFLMDCGSVFYIWVGKGCDNN 661
Score = 104 bits (259), Expect = 5e-23
Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 7/142 (4%)
Query: 193 TTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLC 252
+ N D RCT P ++ ++ +P+G L P ++ LP + ++
Sbjct: 28 NLNADLKKLNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLTQLPVITSNTIVR 87
Query: 253 MRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAA--ITEQHQPAELHP--QFTTI 308
R+ CR +NP + W CN C++ N P ++ +T + P Q +T+
Sbjct: 88 CRS-CRTYINPFVSFID-QRRWKCNLCYRVNDVPEEFMYNPLTRSYGEPHKRPEVQNSTV 145
Query: 309 EYTIPVSQCFPKYPLRSLPVFL 330
E+ + P ++ +F+
Sbjct: 146 EFIASSDYM-LRPPQPAVYLFV 166
Score = 76.1 bits (186), Expect = 3e-14
Identities = 22/172 (12%), Positives = 45/172 (26%), Gaps = 42/172 (24%)
Query: 500 QEDGNEEIEDERETKMEEECQKFGHYNKDDPHS-FQLPENFQMYPQFMYHLRRSQFLQVF 558
+ D + + +G + HS P + +++P ++ L + + +
Sbjct: 514 VSSSLSDARDALVNAVVDSLSAYGSTVSNLQHSALMAPSSLKLFPLYVLALLKQKAFR-- 571
Query: 559 NNSPDETSYYRTLLIHLPHYSRFQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLY 618
+ D+ Y + + L + MI P LY
Sbjct: 572 --------------------------TGTSTRLDDRVYAMCQIKSQPLVHLMKMIHPNLY 605
Query: 619 SY-------------GFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEE 657
P L + + LMD I+ G+
Sbjct: 606 RIDRLTDEGAVHVNDRIVPQPPLQKLSAEKLTREGAFLMDCGSVFYIWVGKG 657
Score = 74.6 bits (182), Expect = 9e-14
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 2 TTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLC 61
+ N D RCT P ++ ++ +P+G L P ++ LP + ++
Sbjct: 28 NLNADLKKLNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLTQLPVITSNTIVR 87
Query: 62 MRNQCRAILNPLCQ 75
R+ CR +NP
Sbjct: 88 CRS-CRTYINPFVS 100
Score = 54.6 bits (130), Expect = 1e-07
Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 10/142 (7%)
Query: 298 PAELHPQFTTIEYTIPVSQCFPKY---PLRSLPVFLPFLIQFVFFLAITHLINQVGSPNL 354
+ + + C P L ++P L + L + + L
Sbjct: 19 MTPVWAPVPNLNADLKKLNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRD-LTQL 77
Query: 355 PPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAA--ITEQHQPAE 412
P + ++ R+ CR +NP + W CN C++ N P ++ +T +
Sbjct: 78 PVITSNTIVRCRS-CRTYINPFVSFID-QRRWKCNLCYRVNDVPEEFMYNPLTRSYGEPH 135
Query: 413 LHP--QFTTIEYTIPLLYSITY 432
P Q +T+E+ Y +
Sbjct: 136 KRPEVQNSTVEFIASSDYMLRP 157
Score = 41.9 bits (97), Expect = 0.001
Identities = 9/57 (15%), Positives = 21/57 (36%)
Query: 661 SHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNATG 717
+ ++ AT Y+ LAL + A+D++ + + L + +
Sbjct: 312 PNQRSSTKVVQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSA 368
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein
complex-II, endoplasmic reticulum, golgi, structural
genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Length = 59
Score = 101 bits (254), Expect = 2e-26
Identities = 37/58 (63%), Positives = 44/58 (75%)
Query: 242 LPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPA 299
EP+LC R CRA+LNPLCQVDY++KLW CNFC+QRN FPP YA I+E +QPA
Sbjct: 2 SSGSSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPA 59
Score = 101 bits (254), Expect = 2e-26
Identities = 37/58 (63%), Positives = 44/58 (75%)
Query: 354 LPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPA 411
EP+LC R CRA+LNPLCQVDY++KLW CNFC+QRN FPP YA I+E +QPA
Sbjct: 2 SSGSSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPA 59
Score = 44.1 bits (104), Expect = 4e-06
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 51 LPPLQYEPLLCMRNQCRAILNPLCQ 75
EP+LC R CRA+LNPLCQ
Sbjct: 2 SSGSSGEPVLCSRTTCRAVLNPLCQ 26
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 3e-09
Identities = 96/609 (15%), Positives = 180/609 (29%), Gaps = 228/609 (37%)
Query: 392 FQRNAFPP--QYAAITEQHQPAELHPQF-----------TTIEYTIPLLYSITYITENDN 438
F + P +AA E PAEL +F ++ L +T +
Sbjct: 37 FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF--ENC 94
Query: 439 VIRRNEIH-IKPRICGLQEENIEEK-----------------FDDSSQEEYFEAEDQE-- 478
+ N+IH + ++ + + + FD S F A +
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 479 -------GQGDSQED--EEMEEQRIEDEEDQEDGNEEIEDERETKMEEECQKFGHYNKDD 529
GQG++ +D EE+ + + + + D + E + D
Sbjct: 155 QLVAIFGGQGNT-DDYFEELRDL-------YQTYHVLVGDLIKF-SAETLSELIRTTLDA 205
Query: 530 PHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRTLLIHLP--------HYSRF 581
F + + ++L+ +N+PD+ Y ++ I P HY
Sbjct: 206 EKVF--TQGLNIL----------EWLENPSNTPDK-DYLLSIPISCPLIGVIQLAHYVVT 252
Query: 582 QFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDCI 641
++ +P E +R L + Q ++ V + +
Sbjct: 253 --AKLLGFTPGE--------LRSYLKGATGHSQGLV---------TAVAIAETDSWESFF 293
Query: 642 LLMDTFFQLLIFHGEEPIRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCAL 701
+ + +L F G +R + + Y +L +I+ +++
Sbjct: 294 VSVRKAITVLFFIG---VRCY---------------EAYPNTSLPPSILEDSLE------ 329
Query: 702 DQTGLLEMKLCCNATGKPSHVLIAIEFAQPSPMLKAQKRLGSTTAAHGAPIPQGGRGCIQ 761
N G PSPML + Q
Sbjct: 330 ------------NNEG------------VPSPML----------SISNLTQEQ------- 348
Query: 762 FITHYQAPSGEKKVRVTTIARNWADATTQL---DHISSGFDQEAAAVIMGR--MVVNRAE 816
+ V T N + L + +++ G +VV+
Sbjct: 349 ---------VQDYVNKT----N-----SHLPAGKQVE-------ISLVNGAKNLVVS--- 380
Query: 817 QDDGPDVMRWADRTLIRLCQKFGHYNKDDPHSFQ--LPENF-QMYPQFMYHLRRSQFLQV 873
GP ++L L K Q +P F + +F ++FL V
Sbjct: 381 ---GP------PQSLYGLNLTL-RKAKAPSGLDQSRIP--FSERKLKF-----SNRFLPV 423
Query: 874 FNNSPDETSYYRHV--LMREDLSQSLIMIQ------PVLYSYGFNGPPVPVLLDTSSIKP 925
SP + L+ +DL ++ + PV Y F+G + VL + SI
Sbjct: 424 A--SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV-YD-TFDGSDLRVL--SGSISE 477
Query: 926 ---DCILLM 931
DCI+ +
Sbjct: 478 RIVDCIIRL 486
Score = 47.0 bits (111), Expect = 4e-05
Identities = 61/487 (12%), Positives = 120/487 (24%), Gaps = 171/487 (35%)
Query: 17 IRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQG 76
+ V +S AS+L + L E + EP
Sbjct: 16 LEHVLLVPTASFFIASQL---QEQFNKILPEPTEGFAADDEP------------------ 54
Query: 77 CVSSTLEALWLKSIFFQAEDGIRDRSFGFHNSSVNIVRSVGHGVINHFGFRVGDESKTSR 136
++ E L K + + + S V V + + F E+
Sbjct: 55 --TTPAE-LVGKFLGYVSSL--------VEPSKVGQFDQVLNLCLTEF------ENC--- 94
Query: 137 SFRDGILHDNNIYNFTPLFKECLHPPNGRVLEWNGTRVAHSTLTVQLSLETLKISMTTYE 196
L N+I H A +L K + Y
Sbjct: 95 -----YLEGNDI-----------H-----------ALAAKLLQENDTTLVKTKELIKNY- 126
Query: 197 EFFYQNEERDGIRCTWNVWPSSKLEASRL----------VMPV----GCLYQPLKEKPDL 242
P K S L ++ + G +E
Sbjct: 127 ---ITARIMAKR-------PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE---- 172
Query: 243 PPLQ-----YEPL---LCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITE 294
L+ Y L L L+ L + ++ F +
Sbjct: 173 --LRDLYQTYHVLVGDLI--KFSAETLSELIRTTLDAE----------KVFTQGLNILEW 218
Query: 295 QHQPAELHPQFTTIEY--TIPVSQCFPKYPLRSLPVFLPFLIQFVFFLAITHLINQVGSP 352
P+ + +Y +IP+S P L +IQ ++ L+
Sbjct: 219 LENPSNTPDK----DYLLSIPIS--CP----------LIGVIQLAHYVVTAKLL------ 256
Query: 353 NLPPLQYEPLLCMRNQC-RAILNPLC--QVD-----YKSKL-------WV---CNFCFQR 394
P + L + ++ + + D + S ++ C +
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 395 NAFPPQYAAITEQHQPAELHPQFTTIEYTIPLLYSITYITE-NDNVIRRNEIHIK----P 449
+ PP + ++ P + T + Y+ + N ++ ++ I
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQV--QDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 450 R---ICG 453
+ + G
Sbjct: 375 KNLVVSG 381
Score = 39.6 bits (92), Expect = 0.006
Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 50/169 (29%)
Query: 190 ISMTTYEEFFYQNEERD-------GIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKP-- 240
I+ T E F+ + + G+RC +P++ L S L + + + P
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCY-EAYPNTSLPPSILEDSL----ENNEGVPSP 337
Query: 241 -----DLPPLQYEPLLCMRNQCR--------AILN-PLCQV---DYKSKLWVCNFCFQRN 283
+L Q + + N +++N V +S L+ N ++
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS-LYGLNLTLRKA 396
Query: 284 AFPPQYAAITEQHQPAELHPQFTTIEYTIPVSQCFPKYPLRSLPVFLPF 332
P +Q + IP S+ K+ R LPV PF
Sbjct: 397 KAPSG----LDQSR--------------IPFSERKLKFSNRFLPVASPF 427
Score = 39.6 bits (92), Expect = 0.006
Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 28/118 (23%)
Query: 88 KSIFFQAEDGIRDRSFGFHNSSVNIVRSVGHGVINHFGFRVGDESKTSRSFRDGILHDNN 147
+ ++ +A++ +D ++GF S ++IV + + HFG G++ K R ++ +
Sbjct: 1643 QDVWNRADNHFKD-TYGF--SILDIVINNPVNLTIHFG---GEKGKRIRENYSAMIFETI 1696
Query: 148 I---YNFTPLFKE--------CLHPPNGRVLEWNGTRVAHST----LTVQLS-LETLK 189
+ +FKE G +L + T+ T ++ + E LK
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTFRSEKG-LL--SATQF---TQPALTLMEKAAFEDLK 1748
Score = 33.9 bits (77), Expect = 0.31
Identities = 44/217 (20%), Positives = 65/217 (29%), Gaps = 70/217 (32%)
Query: 643 LMDTF-FQLLIFHGEEPIRS--HNDIHKG---NNKYQKMATKHYEGLALRAAIVGHAIDI 696
DT+ F +L P+ H KG Y M + L+ + I+
Sbjct: 1653 FKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINE 1712
Query: 697 YSCAL---DQTGLLEMKLCCNATGKPSHVLIAIEFAQPSPML--KAQKRL---------G 742
+S + + GLL +AT +F QP+ L KA
Sbjct: 1713 HSTSYTFRSEKGLL------SAT----------QFTQPALTLMEKAAFEDLKSKGLIPAD 1756
Query: 743 STTAAH--G---APIPQGG-------------RGCIQFITHYQAPSGEK-KVRVTTIARN 783
+T A H G A RG + P E + IA N
Sbjct: 1757 ATFAGHSLGEYAALASLADVMSIESLVEVVFYRG--MTM-QVAVPRDELGRSNYGMIAIN 1813
Query: 784 WADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDG 820
+++ F QEA + VV R + G
Sbjct: 1814 -------PGRVAASFSQEAL-----QYVVERVGKRTG 1838
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.7 bits (128), Expect = 3e-07
Identities = 89/577 (15%), Positives = 160/577 (27%), Gaps = 156/577 (27%)
Query: 130 DESKTSRSFRDGILHD--NNIYNFTPLFKECLHPPNGRVLEWNGTRVAHSTLTVQLSLET 187
S T R F L + F E + N ++ L + E
Sbjct: 60 AVSGTLRLF--WTLLSKQEEMVQ---KFVEEVLRIN---YKF---------LMSPIKTEQ 102
Query: 188 LKISMTTYEEFFYQNEERDGIRCTWNVWPS-SKLEASRLVMPVGCLYQPLKEKPDLPPLQ 246
+ SM T + E+RD + +N +K SRL Y L++ L L+
Sbjct: 103 RQPSMMT-RMY---IEQRDRL---YNDNQVFAKYNVSRLQP-----YLKLRQA--LLELR 148
Query: 247 YEPLLC---MR---NQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAE 300
+ + A+ +C YK + C F F + + + P
Sbjct: 149 PAKNVLIDGVLGSGKTWVALD--VCL-SYKVQ---CKMDF--KIF---WLNLKNCNSPET 197
Query: 301 LHPQFTTIEYTIPVSQCFPKYPLRSLPVFLPFLIQFVFFLAITHLINQVGSPNLPPLQYE 360
+ + Y I + ++ + + + + L+ N
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-----ELRRLLKSKPYEN------- 245
Query: 361 PLLCMRNQCRA-ILNPL---CQV----------DYKSKLWVCNFC--FQRNAFPPQY--- 401
LL + N A N C++ D+ S + P
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 402 --AAITEQHQPAELHPQFTTIEYTIPLLYSITYITEN--DNVIRRNEIHIKPRICGLQEE 457
+ +P +L + T P SI I E+ D + + + K C
Sbjct: 306 LLLKYLD-CRPQDLPREVLTT---NPRRLSI--IAESIRDGLATWD--NWKHVNCDKLTT 357
Query: 458 NIE---EKFDDSSQEEYFEA-----EDQE----------GQGDSQEDEEMEEQRIED--- 496
IE + + + F+ + + + +
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 497 EEDQEDGNEEIED---ERETKMEEECQK----FGHYN---KDDPHSFQLPENFQ-MYPQF 545
E+ ++ I E + K+E E HYN D P Q Y
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 546 MYHLRRSQ-------FLQVFNN-------------SPDETSYYRTLLIHLPHYSRFQFLQ 585
+HL+ + F VF + + + + L L Y +
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY---- 533
Query: 586 VFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGF 622
+ +N P Y R V + L I+ L +
Sbjct: 534 ICDNDPK---YERLV---NAILDFLPKIEENLICSKY 564
Score = 48.7 bits (115), Expect = 9e-06
Identities = 90/689 (13%), Positives = 172/689 (24%), Gaps = 246/689 (35%)
Query: 122 NHFGFRVGDESKTSRSFRDGILHDNNIYNFTPLFKECLHPPNGRVLEWNGTRVAHSTLTV 181
+H F G+ ++D IL F F +
Sbjct: 5 HHMDFETGEHQ---YQYKD-ILSV-----FEDAFVD--------------------NFDC 35
Query: 182 QLSLETLKISMTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPD 241
+ + K ++ EE D I + + + L+ L K +
Sbjct: 36 KDVQDMPKSILS--------KEEIDHI-----IMSKDAVSGTLR------LFWTLLSKQE 76
Query: 242 LPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAI-TEQHQPAE 300
+ + + +++YK ++ + I TEQ QP+
Sbjct: 77 -------------EMVQKFVEEVLRINYK---FL-------------MSPIKTEQRQPSM 107
Query: 301 LHPQF-TTIEYTIPVSQCFPKYPLRSLPVFLPFLIQFVFFLA-----ITH---------L 345
+ + + +Q F KY + L +L L Q + L + +
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK-LRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 346 INQVGSPNLPPLQYEPLLCMRN---------QCR------AILNPLC-QVDYKSKLWVCN 389
V + C + C +L L Q+D N
Sbjct: 167 ALDV-------CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID-------PN 212
Query: 390 FCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPLLYSITYITENDNVIRRNEIHIKP 449
+ R+ Q AEL + Y LL + NV
Sbjct: 213 WT-SRSDHSSNIKLRIHSIQ-AELRRLLKSKPYENCLL-----VL--LNV---------- 253
Query: 450 RICGLQEENIEEKFDDSSQ----EEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDG-- 503
Q F+ S + + + D + ++ + D+
Sbjct: 254 -----QNAKAWNAFNLSCKILLTTRFKQVTDFLS-AATTTHISLDHHSMTLTPDEVKSLL 307
Query: 504 ----NEEIEDERETKMEEECQK-------FGHYNKDDPHSFQLPENFQMYPQFMYHLRRS 552
+ +D E +D ++ +N++
Sbjct: 308 LKYLDCRPQDLPR----EVLTTNPRRLSIIAESIRDGLATW---DNWKHVNCDKLTTIIE 360
Query: 553 QFLQVFNNSPDET-SYYRTLLI-----HLPHYSRFQFLQVF-NNSPDETSYYRHVLMRED 605
L V P E + L + H+P L + + V++ +
Sbjct: 361 SSLNVLE--PAEYRKMFDRLSVFPPSAHIPT----ILLSLIWFDVIKSDV---MVVVNKL 411
Query: 606 LSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEEPIRSHNDI 665
SL+ QP + + + +L + E H I
Sbjct: 412 HKYSLVEKQPKESTIS---------------------IPSIYLELKV-KLENEYALHRSI 449
Query: 666 HKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSC--------ALDQTGL----------- 706
+ Y T + L +D Y ++
Sbjct: 450 V---DHYNIPKTFDSDDLIPP------YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500
Query: 707 --LEMKLC-----CNATGKPSHVLIAIEF 728
LE K+ NA+G + L ++F
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKF 529
Score = 47.9 bits (113), Expect = 2e-05
Identities = 70/466 (15%), Positives = 135/466 (28%), Gaps = 125/466 (26%)
Query: 59 LLCMRNQCRAILNPLCQGCVSSTLEALWLKSIFFQAEDGIRDRSFGFHNSSVNIVRSVGH 118
L ++ I S+ L + SI + ++ + + + + ++ +V +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP---YENCLLVLLNVQN 255
Query: 119 G-VINHFGFRVGDESK---TSR--SFRDGILHDNNIYNFTPLFKECLHPPNGRVL--EWN 170
N F K T+R D + + L P + L ++
Sbjct: 256 AKAWNAFNLS----CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 171 GTRVAHSTLTVQLSLETLKIS---MTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVM 227
R L E L + ++ E RDG+ TW+ W + ++
Sbjct: 312 DCRPQ------DLPREVLTTNPRRLSIIAESI-----RDGL-ATWDNWKHVNCDKLTTII 359
Query: 228 PVGCL-----------YQPL---KEKPDLPPLQYEPLLCM------RNQCRAILNPLCQV 267
L + L +P LL + ++ ++N L
Sbjct: 360 ES-SLNVLEPAEYRKMFDRLSVFPPSAHIP----TILLSLIWFDVIKSDVMVVVNKLH-- 412
Query: 268 DYKSKLWVCNFCFQRNAFPPQYAAITEQ-HQPAELHPQFTTIE-YTIPVSQCFPKYPLRS 325
K L + P Y + + LH ++ Y IP +
Sbjct: 413 --KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI--VDHYNIPK-----TFDSDD 463
Query: 326 LPVFLPFLIQFVF-FLAITHL--INQVGSPNLPPLQYEPLLCMRNQCRAILNPLCQVDY- 381
L P+L Q+ + + HL I L + + +D+
Sbjct: 464 LI--PPYLDQYFYSHIG-HHLKNIEHPERMTLFRMVF-------------------LDFR 501
Query: 382 --KSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPLLYSITYITENDNV 439
+ K+ R+ A + +++ Y YI +ND
Sbjct: 502 FLEQKI--------RHDSTAWNA-------SGSILNTLQQLKF-----YK-PYICDNDPK 540
Query: 440 IRRNEIHIKPRICGLQEENIEEKFDDSSQ-----EE---YFEAEDQ 477
R I + ++E I K+ D + E+ + EA Q
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
Score = 38.3 bits (88), Expect = 0.014
Identities = 85/615 (13%), Positives = 181/615 (29%), Gaps = 184/615 (29%)
Query: 392 FQRNAFPPQYAAITEQHQPAELHPQFTT---IEYTIPLLYSITYITENDNVIR-RNEIHI 447
F+ QY I + A F + + SI E D++I ++ +
Sbjct: 9 FETGEHQYQYKDILSVFEDA-----FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 448 KPRICGL---QEENIEEKF-DDSSQEEY-FEAEDQEGQGDSQEDEEMEEQRIEDEEDQED 502
R+ ++E + +KF ++ + Y F I+ E+ Q
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS-----------------PIKTEQRQPS 106
Query: 503 GNEEIEDERETKMEEECQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQV----- 557
+ E+ ++ + Q F ++ + + Q + LR ++ + +
Sbjct: 107 MMTRMYIEQRDRLYNDNQVF------AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 558 FNNSPDETSYYRTLLIHLPHYSRFQFLQVF------NNSPDETSYYRHVLMREDLSQSLI 611
+ + + + F ++F NSP+ + M + L L
Sbjct: 161 SGKTWVALDVCLSYKVQ----CKMDF-KIFWLNLKNCNSPETV-----LEMLQKL---LY 207
Query: 612 MIQPVLYSYGFNGPPVPVLLDTSSIK------------PDCILLMDTFFQLLIFHGEEPI 659
I P S + + L SI+ +C+L++ +
Sbjct: 208 QIDPNWTSRSDHSSNIK--LRIHSIQAELRRLLKSKPYENCLLVLLN------------V 253
Query: 660 RSHNDIHKGNNKYQKMATKHYEGLA--LRAAIVGH-AIDIYSCAL--DQT-GLLEMKLCC 713
++ + N + + T ++ + L AA H ++D +S L D+ LL L C
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 714 NATGKPSHVLIAIEFAQPSP----MLKAQKRLGSTTAAHGAPIPQGGRGCIQFITHYQA- 768
P E +P ++ R G T H
Sbjct: 314 RPQDLPR------EVLTTNPRRLSIIAESIRDGLAT--------------WDNWKHVNCD 353
Query: 769 --------------PSGEKK-----------VRVT--TIARNWADATTQ-LDHISSGFDQ 800
P+ +K + ++ W D + + + +
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 801 EAAAV---------IMGRMVVNRAEQDDGPDVMRWADRTLIRLCQKFGHYN---KDDPHS 848
+ I + + + ++ + R+++ HYN D
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYAL----HRSIVD------HYNIPKTFDSDD 463
Query: 849 FQLPENFQ-MYPQFMYHLRRSQFLQVFNNSPDETSYYRHVLMREDLS---QSLIMIQPVL 904
P Q Y +HL+ + P+ + +R V + D Q +
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIE-------HPERMTLFRMVFL--DFRFLEQKIRHDS--- 511
Query: 905 YSYGFNGPPVPVLLD 919
++ +G + L
Sbjct: 512 TAWNASGSILNTLQQ 526
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 41.4 bits (96), Expect = 3e-04
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 459 IEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERE---TKM 515
+ DD +++ +A + E + + DE+ +E ED++D +D +EE E+E +
Sbjct: 21 VAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLEDL 80
Query: 516 EEECQKFGH 524
E +
Sbjct: 81 REHFKNTEE 89
Score = 37.2 bits (85), Expect = 0.007
Identities = 14/62 (22%), Positives = 32/62 (51%)
Query: 457 ENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERETKME 516
E ++ + +Q + ++ +E+ EE EDE++ ED +++ +D+ + + E
Sbjct: 11 EQLKITVVPVVAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEE 70
Query: 517 EE 518
EE
Sbjct: 71 EE 72
Score = 36.8 bits (84), Expect = 0.009
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 455 QEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERETK 514
E++ E+ + +EE ED++ D +D++ +E E+EE+ D E++ + K
Sbjct: 29 NEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDE-EEEEEVTDQLEDLRE--HFK 85
Query: 515 MEEECQKFGH 524
EE + H
Sbjct: 86 NTEEGKALVH 95
Score = 30.2 bits (67), Expect = 1.5
Identities = 13/62 (20%), Positives = 28/62 (45%)
Query: 457 ENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERETKME 516
E + E ++ E + Q +E+ E ++EE+ ++ +E EDE + +
Sbjct: 4 ELVGEYWEQLKITVVPVVAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDD 63
Query: 517 EE 518
+E
Sbjct: 64 DE 65
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 41.7 bits (97), Expect = 4e-04
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 455 QEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERETK 514
Q + ++E D +S+ E E +E ++ EE +++ E E + N + +
Sbjct: 94 QRKRLQEL-DAASKVM--EQEWREKA--KKDLEEWNQRQSEQVEKNKINNRIADKAFYQQ 148
Query: 515 MEEE 518
+ +
Sbjct: 149 PDAD 152
Score = 40.1 bits (93), Expect = 0.001
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 14/70 (20%)
Query: 455 QE-ENI----EEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIE- 508
QE E+I EE Q + + D + E E E+ + + EE + +E++E
Sbjct: 82 QEPESIRKWREE------QRKRLQELDAASK--VMEQEWREKAKKDLEEWNQRQSEQVEK 133
Query: 509 DERETKMEEE 518
++ ++ ++
Sbjct: 134 NKINNRIADK 143
Score = 39.8 bits (92), Expect = 0.002
Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 9/49 (18%)
Query: 483 SQEDEEMEEQRIEDEEDQEDGNEEIE--DERETKMEEECQKFGHYNKDD 529
+QE E + + R E+Q + ++ D ME+E ++ + ++
Sbjct: 81 TQEPESIRKWR----EEQR---KRLQELDAASKVMEQEWREKAKKDLEE 122
Score = 35.9 bits (82), Expect = 0.033
Identities = 11/63 (17%), Positives = 29/63 (46%), Gaps = 16/63 (25%)
Query: 464 DDSSQEEYFEA-----EDQEGQGDSQEDEEMEEQRIEDEED-QEDGNEEIED---ERETK 514
D +QE E+ E+Q + +E++ E++ +E +++E+ + +
Sbjct: 78 DRLTQEP--ESIRKWREEQR-----KRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ 130
Query: 515 MEE 517
+E+
Sbjct: 131 VEK 133
Score = 34.4 bits (78), Expect = 0.10
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 15/85 (17%)
Query: 433 ITENDNV------IR--RNEIHIKPRICGLQEENIEEKFDDSSQEEYF--EAEDQEGQGD 482
I + D + IR R E + R+ QE + K + E + E+ +
Sbjct: 74 IAQADRLTQEPESIRKWREEQ--RKRL---QELDAASKVMEQEWREKAKKDLEEWNQRQS 128
Query: 483 SQEDEEMEEQRIEDEEDQEDGNEEI 507
Q ++ RI D+ + + +I
Sbjct: 129 EQVEKNKINNRIADKAFYQQPDADI 153
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 42.0 bits (99), Expect = 6e-04
Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 3/120 (2%)
Query: 402 AAITEQHQPAELHPQFTTIEYTIPLLYSITYITENDNVIRRNEIHIKPRICGLQEENIEE 461
+A E + + HP+ + + I Y+ DN + E+ I C L E N
Sbjct: 171 SAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEIS--WCSLSETNGLH 228
Query: 462 KFDDSSQ-EEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERETKMEEECQ 520
KF +E + +E GD EDE+ + + +++ + + + +
Sbjct: 229 KFVKGDLLQEAIDFAQKEINGDDDEDEDDSDNVMSSDDENAPVATNANATTDQEGDIHLE 288
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 39.1 bits (91), Expect = 0.005
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 12/95 (12%)
Query: 428 YSITYITENDNVIRRNEIHIKPRICGLQEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDE 487
+ITY+ E N + E + I G + N EE ++ E
Sbjct: 30 EAITYLLEQYNRVEAEEARLSDLITGFVDPNAEEDLAPTATHV------------GSELS 77
Query: 488 EMEEQRIEDEEDQEDGNEEIEDERETKMEEECQKF 522
+ + EDE++++ ++ +D+ E +KF
Sbjct: 78 QEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKF 112
>1l4a_E Synaphin A; snare, snare complex, membrane fusion,
neurotransmission, endocytosis/exocytosis complex; 2.95A
{Loligo pealei} SCOP: h.1.15.1
Length = 79
Score = 35.7 bits (81), Expect = 0.007
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 474 AEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERETKMEEECQKFGHYNKDD 529
E + + +E +EE R E EE +++ + ++E+ERE + K+G K
Sbjct: 6 GEKEGNENAEEEAAAIEEARREAEERRKEKHRKMEEEREEMRQTIRDKYGLKKKVK 61
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 37.1 bits (86), Expect = 0.036
Identities = 11/52 (21%), Positives = 23/52 (44%)
Query: 467 SQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERETKMEEE 518
S ++ E+ED G ++ +E + E + + G + + + R EE
Sbjct: 3 SDDDLLESEDDYGSEEALSEENVHEASANPQPEDFHGIDIVINHRLKTSLEE 54
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 36.1 bits (82), Expect = 0.050
Identities = 11/52 (21%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 470 EYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERETKMEEECQK 521
++F E + + E+E E++ ++EED + G E+ + E + ++ +
Sbjct: 358 DWFTGAALEFEFEEDEEEADEDE--DEEEDDDHGLEDDDGESAEEQDDFAGR 407
Score = 33.8 bits (76), Expect = 0.25
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 470 EYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERETKMEE--EC 519
E E +E + ++ EDE+ EE ED + + E +D+ + E+ EC
Sbjct: 363 AALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAPEC 414
Score = 32.2 bits (72), Expect = 0.94
Identities = 10/51 (19%), Positives = 21/51 (41%)
Query: 481 GDSQEDEEMEEQRIEDEEDQEDGNEEIEDERETKMEEECQKFGHYNKDDPH 531
G + E E E++ DE++ E+ +++ E + E Q +
Sbjct: 362 GAALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAP 412
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA
complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Length = 438
Score = 36.1 bits (83), Expect = 0.060
Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 2/77 (2%)
Query: 456 EENIEE--KFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERET 513
+E ++E + E + + + E+E+ + + + + +E
Sbjct: 19 KEPVKEPEPLPELEAAEDLQDLPEPDPELLASEPELEDLADPLDLEGPLEADLLPEEGLL 78
Query: 514 KMEEECQKFGHYNKDDP 530
+ EEE + DP
Sbjct: 79 EEEEEELSLPKVSTSDP 95
>1twf_F ABC23, DNA-directed RNA polymerases I, II, and III 23 KD
polypeptide; transcription, mRNA, multiprotein complex;
HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP:
a.143.1.2 PDB: 1i3q_F 1i6h_F 1k83_F* 1nik_F 1nt9_F
1pqv_F 1r5u_F 1r9s_F* 1r9t_F* 1sfo_F* 1twa_F* 1twc_F*
1i50_F* 1twg_F* 1twh_F* 1wcm_F 1y1v_F 1y1w_F 1y1y_F
1y77_F* ...
Length = 155
Score = 33.9 bits (77), Expect = 0.100
Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 11/108 (10%)
Query: 460 EEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERETKMEEEC 519
EE F+D + E + E D E D + EE + + + D ++
Sbjct: 5 EEAFNDGN-ENF-EDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVTGGNGPEDFQQHE 62
Query: 520 QKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQF-----LQVFNNSP 562
Q K+ +P++ + +M R++ LQ+ N+P
Sbjct: 63 QIRRKTLKEK----AIPKDQRATTPYMTKYERARILGTRALQISMNAP 106
>2o8g_I IPP-2, protein phosphatase inhibitor 2; hydrolase-inhibitor comple;
2.50A {Mus musculus} PDB: 2o8a_I
Length = 206
Score = 34.0 bits (77), Expect = 0.15
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 460 EEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERETKMEEEC 519
E+ + DS E + + + E E + + E E E+ N+ +ERE K + E
Sbjct: 84 EDAYSDSEGNEVMTPDILAKKLAAAEGSEPKYRTREQESSGEEDNDLSPEEREKKRQFEM 143
Query: 520 QKFGHYN 526
++ HYN
Sbjct: 144 KRKLHYN 150
>3h0g_F DNA-directed RNA polymerases I, II, and III subunit rpabc2;
transcription, multi-protein complex, DNA- binding,
magnesium; 3.65A {Schizosaccharomyces pombe}
Length = 142
Score = 32.7 bits (74), Expect = 0.22
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 472 FEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERETKMEEE 518
+E ++ G + +EE++E + DE Q E T + E
Sbjct: 4 YEEDEAFGMDGAVMEEEVDELEMIDENGQSQQGVSHPGEPSTTVITE 50
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1
domain, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 112
Score = 30.8 bits (70), Expect = 0.55
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 495 EDEEDQEDGNEEIEDERETKMEEECQKFGH 524
D ED EI ++ + EC KFG
Sbjct: 27 MDFEDDPLVLNEIRED----LRVECSKFGQ 52
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone
chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A
{Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A
3c9b_A 3q33_B* 3q35_B* 3dm7_A
Length = 264
Score = 32.4 bits (73), Expect = 0.61
Identities = 5/43 (11%), Positives = 16/43 (37%)
Query: 470 EYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERE 512
+Y+ ++ + + E + ED++ + + E
Sbjct: 214 KYYAEAQRDLEDEEGESGLSADGDSEDDDGSLGEVDLPLSDEE 256
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 32.7 bits (75), Expect = 0.62
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 17/98 (17%)
Query: 436 NDNVIRRNEIHIKPRICGLQEENI--EEKFDDSSQEEYFEAEDQ----------EGQGDS 483
+ + + I L+ ENI + K Q + + Q E G
Sbjct: 122 DGKTVSYKDYSIF-----LENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSI 176
Query: 484 QEDEEMEEQRIEDEEDQEDGNEEIEDERETKMEEECQK 521
Q +E EE + + E+ + E I++ R E + K
Sbjct: 177 QYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYK 214
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 32.8 bits (75), Expect = 0.64
Identities = 15/81 (18%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 438 NVIRRNEIHIKPRICGLQEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDE 497
VI+R+ + I + + +E++ +E+ +D+E + + ++DE+ ++ ++E+
Sbjct: 192 EVIKRHSEFVAYPIQLVVTKEVEKEVPIPEEEK----KDEEKKDEEKKDEDDKKPKLEEV 247
Query: 498 EDQEDGNEEIEDERETKMEEE 518
+++E+ + + +E E E
Sbjct: 248 DEEEEKKPKTKKVKEEVQEIE 268
>3fs3_A Nucleosome assembly protein 1, putative; protein localization,
histone recognition, structural analysis, CHA; 2.30A
{Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Length = 359
Score = 32.2 bits (72), Expect = 0.83
Identities = 10/98 (10%), Positives = 22/98 (22%), Gaps = 15/98 (15%)
Query: 456 EENIEEKFDDSSQEEYFEAEDQEGQ---------------GDSQEDEEMEEQRIEDEEDQ 500
K + + E E + + G E E D
Sbjct: 251 VIKQLSKHEVAQLEMIIEGDYEVALTIKERIIPYAVDYYLGIIIESESNSIVSDVDSSYS 310
Query: 501 EDGNEEIEDERETKMEEECQKFGHYNKDDPHSFQLPEN 538
N + E+ + + + ++ + E
Sbjct: 311 SSENNSNYNSYESNNSAYNDENSNVDTNEYDDNEEEEE 348
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 30.6 bits (69), Expect = 0.89
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 14/79 (17%)
Query: 457 ENIEEKFDDSSQE-EYFEAEDQEGQGDSQEDEEM----EEQRIEDEEDQEDGNEEIEDER 511
+ +EEK QE + + Q Q + + EE + +I+ E ++ N+ +EDE
Sbjct: 37 KELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEE 96
Query: 512 ET---------KMEEECQK 521
E K+E+EC +
Sbjct: 97 EMNAELTAKKRKLEDECSE 115
Score = 30.2 bits (68), Expect = 1.1
Identities = 11/69 (15%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 455 QEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERET- 513
+E+ + +EE+ ++ + +E+EE+ + +++ D +++ E++
Sbjct: 11 REKEMASM-----KEEFTRLKEAL-EKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNL 64
Query: 514 -KMEEECQK 521
EE C +
Sbjct: 65 ADAEERCDQ 73
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus
musculus} PDB: 2lq5_A
Length = 114
Score = 30.4 bits (69), Expect = 0.99
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 496 DEEDQEDGNEEIEDERETKMEEECQKFGH 524
E++ + EI+D+ + EEC K G
Sbjct: 19 QTEEEVGWDTEIKDD----VIEECNKHGG 43
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB:
1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I*
1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I*
1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Length = 348
Score = 31.7 bits (71), Expect = 0.99
Identities = 9/52 (17%), Positives = 22/52 (42%)
Query: 456 EENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEI 507
EE + E+ + E + D+ +++ + +E D +D ++E
Sbjct: 288 EEALPEELQGVEADVATEEPTDDQDDDTASEDDADADDAAEEADDDDDDDED 339
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM,
RNA binding domain, ST genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.23A {Homo
sapiens} PDB: 3us5_A 2dny_A
Length = 118
Score = 30.1 bits (68), Expect = 1.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 505 EEIEDERETKMEEECQKFGH 524
++I+D+ E ++ EEC KFG
Sbjct: 32 KDIDDDLEGEVTEECGKFGA 51
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 31.8 bits (71), Expect = 1.3
Identities = 12/77 (15%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 454 LQEENIEEKFDDSSQEEYFEAEDQEGQGD------SQEDEEMEEQRIEDEEDQEDGNEEI 507
LQ + + + + E +AE + + ++ ME++ +E + E++
Sbjct: 476 LQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKM 535
Query: 508 EDERETKMEEECQKFGH 524
E++R ++E+ +
Sbjct: 536 ENDRVQLLKEQERTLAL 552
Score = 30.7 bits (68), Expect = 2.8
Identities = 7/64 (10%), Positives = 26/64 (40%)
Query: 455 QEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERETK 514
+E++++ + + ++QE + E+ + + +++ EI+D +
Sbjct: 524 YQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 583
Query: 515 MEEE 518
+
Sbjct: 584 RRRK 587
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 31.3 bits (70), Expect = 1.7
Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 455 QEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERETK 514
++ + S Q E + ++ + + EQ +++ ++ E E+ K
Sbjct: 646 VDQRTRDALQRSVQLAI-EITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARK 704
Query: 515 MEEECQK 521
E +
Sbjct: 705 ELLELEA 711
Score = 31.3 bits (70), Expect = 2.0
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 455 QEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERETK 514
QE + + QE E Q+ D E E+ ++ +E E + E +
Sbjct: 669 QEAAAKHEAQRLEQEARGRLERQK-ILDQSEAEKARKELLELEAMSMAVESTGNAKAEAE 727
Query: 515 MEEECQK 521
E +
Sbjct: 728 SRAEAAR 734
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske
non-heme dioxygenase, substrate specificity iron-
sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP:
b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A*
2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A
1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Length = 447
Score = 30.9 bits (70), Expect = 2.0
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Query: 812 VNRAEQDDGPDVMRWADRTLIRLCQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFL 871
D PD+M + +L ++ G SF N ++P + + F
Sbjct: 256 SGNFSADMIPDLMAFGAAKQEKLAKEIGDVRARIYRSFL---NGTIFPNNSFLTGSAAFR 312
Query: 872 QVFNNSPDET 881
+ T
Sbjct: 313 VWNPIDENTT 322
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 30.9 bits (69), Expect = 2.0
Identities = 11/69 (15%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 456 EENIEEKFDDSSQEEYFEAEDQEGQGDSQEDE---EMEEQRIEDEEDQEDGNEEIEDERE 512
EE + + F +E+ E ++ E + + D ++++ + E+ ++ ++E+ ++
Sbjct: 339 EEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQ 398
Query: 513 TKMEEECQK 521
K E +
Sbjct: 399 RKTAAELLQ 407
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 30.4 bits (68), Expect = 2.3
Identities = 4/81 (4%), Positives = 18/81 (22%), Gaps = 1/81 (1%)
Query: 441 RRNEIHIKPRICGLQEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQ 500
+++ K ++ + + + Q + D+ +
Sbjct: 69 GFHKVQTKLTRELEKKFQDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAV-HDKILE 127
Query: 501 EDGNEEIEDERETKMEEECQK 521
+ + + K
Sbjct: 128 DLVFPTEIVGKRVRYLVGGNK 148
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB:
2peh_A
Length = 105
Score = 28.6 bits (64), Expect = 2.8
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 505 EEIEDERETKMEEECQKFGHYNK 527
E++++ E + +EEC+K+G K
Sbjct: 20 GEVDEDLEVETKEECEKYGKVGK 42
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.5 bits (69), Expect = 3.1
Identities = 12/72 (16%), Positives = 26/72 (36%)
Query: 450 RICGLQEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIED 509
+I +E ++ E + E ++ + D + EE+ EEI
Sbjct: 936 KIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAK 995
Query: 510 ERETKMEEECQK 521
R+ + + +K
Sbjct: 996 LRKELHQTQTEK 1007
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 3.1
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 16/39 (41%)
Query: 13 ERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDL 51
E+ ++ KL+AS L LY P L
Sbjct: 18 EKQALK---------KLQAS-LK-----LYAD-DSAPAL 40
Score = 29.5 bits (65), Expect = 3.1
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 16/39 (41%)
Query: 204 ERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDL 242
E+ ++ KL+AS L LY P L
Sbjct: 18 EKQALK---------KLQAS-LK-----LYAD-DSAPAL 40
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear
protein complex, chromatin remodeling nucleosome
remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Length = 374
Score = 30.1 bits (67), Expect = 3.1
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 15/92 (16%)
Query: 449 PRICGLQEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEI- 507
P++ L E E + +D + D+E E +E E +
Sbjct: 51 PQLQVLYE--KERMWTAKKTGYVPTMDDVKAAYGKISDQE------EQKEKLELLKLSVN 102
Query: 508 ------EDERETKMEEECQKFGHYNKDDPHSF 533
E+E + K + E + F ++NK + F
Sbjct: 103 NSQPLTEEEEKMKADWESEGFTNWNKLEFRKF 134
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 29.7 bits (66), Expect = 3.6
Identities = 14/117 (11%), Positives = 30/117 (25%), Gaps = 41/117 (35%)
Query: 468 QEEYFEAEDQEGQGDSQEDEE----------MEEQRIEDEEDQ--------------EDG 503
Q Y +E +E DS + + +E + + + E
Sbjct: 121 QVNY-SSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVIAYEPFENIAIELP 179
Query: 504 NEEIEDERETKMEEEC-------QKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQ 553
EI M+ +K ++ + + QF + +
Sbjct: 180 PNEILFSENNDMDNNNDGVDELNKKCTFWDAIS-KLYYV--------QFFFKQAEQE 227
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation,
ATP-binding, phosphoprotein, protein biosynthesis,
translation regulation; HET: AMP; 2.6A {Saccharomyces
cerevisiae} PDB: 2vsx_E*
Length = 284
Score = 29.9 bits (66), Expect = 3.9
Identities = 7/74 (9%), Positives = 19/74 (25%)
Query: 491 EQRIEDEEDQEDGNEEIEDERETKMEEECQKFGHYNKDDPHSFQLPENFQMYPQFMYHLR 550
++ D+ + +E E ++ + M
Sbjct: 138 DKGWTDKLPTNEDGTPLEPEMMSEEYYAAASAKRRGLGLVRFIGFLYRLNLLTGKMMFEC 197
Query: 551 RSQFLQVFNNSPDE 564
+ ++ +SP E
Sbjct: 198 FRRLMKDLTDSPSE 211
>2kld_A Polycystin-2; PC2, PKD2, calcium binding domain, EF hand,
cytosolic, calcium, coiled coil, disease mutation,
glycoprotein, ION transport; NMR {Homo sapiens} PDB:
2kle_A 2kq6_A 2y4q_A
Length = 123
Score = 28.5 bits (63), Expect = 4.5
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 460 EEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIED 509
+ D+ E F DQ+G + E E ++ R + E+++ED + +
Sbjct: 74 GKGHTDAEIEAIFTKYDQDGDQELTE-HEHQQMRDDLEKEREDLDLDHSS 122
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein
complex, heterodimer, metallochaperone, amyotrophic
lateral sclerosis; 2.90A {Saccharomyces cerevisiae}
SCOP: b.1.8.1 d.58.17.1
Length = 249
Score = 29.7 bits (66), Expect = 4.5
Identities = 14/126 (11%), Positives = 29/126 (23%), Gaps = 13/126 (10%)
Query: 702 DQTGLLEMKLCCNATGKPSHVLIAIEFAQPSP---MLKAQKRLGSTTAAHGAPIPQGG-- 756
L + K + V Q + + A I + G
Sbjct: 80 AVAILETFQKYTIDQKKDTAVRGLARIVQVGENKTLFDITVNGVPEAGNYHASIHEKGDV 139
Query: 757 -RGCIQFITHYQAPSGEKKVR-VTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNR 814
+G + + + + +N T L + ++GR V
Sbjct: 140 SKGVESTGKVWHKFDEPIECFNESDLGKNLYSGKTFLSAPLPTWQ------LIGRSFVIS 193
Query: 815 AEQDDG 820
+
Sbjct: 194 KSLNHP 199
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 29.6 bits (66), Expect = 4.6
Identities = 14/84 (16%), Positives = 27/84 (32%)
Query: 438 NVIRRNEIHIKPRICGLQEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDE 497
VI + ++ + + E K + +E ++ + E EE+ E
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 498 EDQEDGNEEIEDERETKMEEECQK 521
+ EEI+ E Q
Sbjct: 188 GKCAELEEEIKTVTNNLKSLEAQA 211
Score = 29.2 bits (65), Expect = 6.2
Identities = 13/68 (19%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 455 QEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEME-EQRIEDEEDQEDGNEEIEDERET 513
+ +K +++ + A++ E E + E+++E +E Q + I ++ +
Sbjct: 105 RLATALQKLEEAEKA----ADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
Query: 514 KMEEECQK 521
K EE +K
Sbjct: 161 KYEEVARK 168
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 29.4 bits (66), Expect = 4.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 503 GNEEIEDERETKMEEECQKFGHYNK 527
++I+D+ E ++ EEC KFG N+
Sbjct: 134 DPKDIDDDLEGEVTEECGKFGAVNR 158
>1q8b_A Protein YJCS; structural genomics, PSI, protein structure
initiative, MIDW center for structural genomics, MCSG,
unknown function; 1.90A {Bacillus subtilis} SCOP:
d.58.4.6
Length = 105
Score = 27.9 bits (62), Expect = 4.9
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 2/78 (2%)
Query: 493 RIEDEEDQEDGNEEIED-ERETKMEEECQKFG-HYNKDDPHSFQLPENFQMYPQFMYHLR 550
+I ++D + +E + E ET EE C F + + L E ++ H
Sbjct: 21 KIISDKDLNEIMKEFKKLEEETNKEEGCITFHAYPLEPSERKIMLWEIWENEEAVKIHFT 80
Query: 551 RSQFLQVFNNSPDETSYY 568
+ + V E +
Sbjct: 81 KKHTIDVQKQELTEVEWL 98
>1qkl_A RPB6, DNA-directed RNA polymerase II 14.4 KD polypeptide;
transcription; NMR {Homo sapiens} SCOP: a.143.1.2
Length = 127
Score = 28.4 bits (63), Expect = 5.0
Identities = 11/57 (19%), Positives = 24/57 (42%)
Query: 460 EEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERETKME 516
E+ FD ++ E E + +++E+ + + + E + + I TK E
Sbjct: 5 EDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYE 61
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle,
dimer, chaperone, STRE response; 3.23A {Thermus
thermophilus}
Length = 177
Score = 28.8 bits (65), Expect = 5.5
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 459 IEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQ 500
+EE+ +++ E+ EA QE Q + + EE+ ++ +D+
Sbjct: 1 MEERNHENTLEKDLEAVGQEAQALEERLKAAEEE-LKGLKDK 41
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein,
RNA splicing, structural GENO joint center for
structural genomics, JCSG; HET: MSE; 1.80A {Mus
musculus} PDB: 1o0p_A 1opi_A
Length = 105
Score = 27.8 bits (62), Expect = 5.5
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 495 EDEEDQEDGNEEIEDERETKMEEECQKFGH 524
+E ++ EEI ++ + +EC K+G
Sbjct: 16 PEELLDDEEYEEIVED----VRDECSKYGL 41
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell
surface, secretory P metal binding protein; 2.00A {Homo
sapiens} PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Length = 211
Score = 28.7 bits (63), Expect = 8.2
Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 15/109 (13%)
Query: 469 EEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERETKMEEECQKFGHYNKD 528
+E E+ +QE + Q+ E R+E + D R +E
Sbjct: 68 QEKVESLEQEAANERQQLVETHMARVE---------AMLNDRRRLALENYITA---LQAV 115
Query: 529 DPHSFQLPENFQMYPQFMYHLRR---SQFLQVFNNSPDETSYYRTLLIH 574
P + + Y + R+ F V P + + R+ ++
Sbjct: 116 PPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMT 164
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence
factor, S active protein, toxin; 3.04A {Streptococcus
pyogenes serotype M1} PDB: 2xny_M
Length = 155
Score = 28.1 bits (61), Expect = 9.2
Identities = 11/67 (16%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 455 QEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEME-EQRIEDEEDQEDGNEEIEDERET 513
+ E + + ++ AE+ E + ED+ + E ++++ + D +E
Sbjct: 33 DLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDLAKESTSWDRQ 92
Query: 514 KMEEECQ 520
++E+E +
Sbjct: 93 RLEKELE 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.431
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,661,895
Number of extensions: 884977
Number of successful extensions: 1926
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1807
Number of HSP's successfully gapped: 135
Length of query: 950
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 847
Effective length of database: 3,825,930
Effective search space: 3240562710
Effective search space used: 3240562710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.5 bits)