RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13068
(950 letters)
>d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 103
Score = 192 bits (489), Expect = 4e-58
Identities = 72/103 (69%), Positives = 86/103 (83%)
Query: 799 DQEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLIRLCQKFGHYNKDDPHSFQLPENFQMY 858
DQEAAAV+M R+ V++AE DDG DV+RW DRTLI+LCQK+ YNKDDP SF+L NF +Y
Sbjct: 1 DQEAAAVLMARIAVHKAETDDGADVIRWLDRTLIKLCQKYADYNKDDPQSFRLAPNFSLY 60
Query: 859 PQFMYHLRRSQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQ 901
PQF Y+LRRSQFL VFNNSPDET++YRH+ RED + SLIMIQ
Sbjct: 61 PQFTYYLRRSQFLSVFNNSPDETAFYRHIFTREDTTNSLIMIQ 103
Score = 115 bits (291), Expect = 3e-31
Identities = 47/96 (48%), Positives = 55/96 (57%), Gaps = 29/96 (30%)
Query: 519 CQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRTLLIHLPHY 578
CQK+ YNKDDP SF+L NF +YPQF Y+LRRS
Sbjct: 37 CQKYADYNKDDPQSFRLAPNFSLYPQFTYYLRRS-------------------------- 70
Query: 579 SRFQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQ 614
QFL VFNNSPDET++YRH+ RED + SLIMIQ
Sbjct: 71 ---QFLSVFNNSPDETAFYRHIFTREDTTNSLIMIQ 103
>d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 107
Score = 110 bits (276), Expect = 3e-29
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 4/106 (3%)
Query: 799 DQEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLIRLCQKF----GHYNKDDPHSFQLPEN 854
DQ A A V +A D ++++ + + N +L N
Sbjct: 1 DQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNTAGGAPLRLCAN 60
Query: 855 FQMYPQFMYHLRRSQFLQVFNNSPDETSYYRHVLMREDLSQSLIMI 900
+M+P M+ L + + D + + L L + I
Sbjct: 61 LRMFPLLMHSLTKHMAFRSGIVPSDHRASALNNLESLPLKYLIKNI 106
Score = 67.1 bits (164), Expect = 3e-14
Identities = 11/52 (21%), Positives = 18/52 (34%)
Query: 525 YNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRTLLIHLP 576
N +L N +M+P M+ L + + D + L LP
Sbjct: 47 SNTAGGAPLRLCANLRMFPLLMHSLTKHMAFRSGIVPSDHRASALNNLESLP 98
>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 75
Score = 105 bits (264), Expect = 5e-28
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 241 DLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAE 300
+L Y P++C C++ILNP C +D ++ W C C RN PPQY +++++ P E
Sbjct: 1 ELNVAPYNPVVCSGPHCKSILNPYCVIDPRNSSWSCPICNSRNHLPPQYTNLSQENMPLE 60
Query: 301 LHPQFTTIEYTIP 313
L Q TTIEY
Sbjct: 61 L--QSTTIEYITN 71
Score = 103 bits (258), Expect = 3e-27
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 354 LPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAEL 413
L Y P++C C++ILNP C +D ++ W C C RN PPQY +++++ P EL
Sbjct: 2 LNVAPYNPVVCSGPHCKSILNPYCVIDPRNSSWSCPICNSRNHLPPQYTNLSQENMPLEL 61
Query: 414 HPQFTTIEYTIP 425
Q TTIEY
Sbjct: 62 --QSTTIEYITN 71
Score = 46.0 bits (109), Expect = 4e-07
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 50 DLPPLQYEPLLCMRNQCRAILNPLCQ 75
+L Y P++C C++ILNP C
Sbjct: 1 ELNVAPYNPVVCSGPHCKSILNPYCV 26
>d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 142
Score = 79.4 bits (196), Expect = 5e-18
Identities = 24/43 (55%), Positives = 32/43 (74%)
Query: 615 PVLYSYGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEE 657
P L S+ P PVLLD+ S+KP+ ILL+DTFF +LI+HGE+
Sbjct: 1 PTLTSFSMEDDPQPVLLDSISVKPNTILLLDTFFFILIYHGEQ 43
Score = 79.4 bits (196), Expect = 5e-18
Identities = 24/42 (57%), Positives = 31/42 (73%)
Query: 902 PVLYSYGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGE 943
P L S+ P PVLLD+ S+KP+ ILL+DTFF +LI+HGE
Sbjct: 1 PTLTSFSMEDDPQPVLLDSISVKPNTILLLDTFFFILIYHGE 42
>d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 176
Score = 75.6 bits (186), Expect = 3e-16
Identities = 24/43 (55%), Positives = 33/43 (76%)
Query: 8 FYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPD 50
F NE+ +G+R TWNV+PS++ +A+ V+PVGCLY PLKE D
Sbjct: 2 FETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDD 44
Score = 75.6 bits (186), Expect = 3e-16
Identities = 24/43 (55%), Positives = 33/43 (76%)
Query: 199 FYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPD 241
F NE+ +G+R TWNV+PS++ +A+ V+PVGCLY PLKE D
Sbjct: 2 FETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDD 44
Score = 68.7 bits (168), Expect = 6e-14
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 737 AQKRLGSTTAAHGAPIPQGGRGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISS 796
+ + + QFIT YQ SG ++RVTT+A T I++
Sbjct: 117 NTAANSNPMMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLPFGTP--AIAA 174
Query: 797 GF 798
F
Sbjct: 175 SF 176
>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 271
Score = 74.3 bits (182), Expect = 4e-15
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 656 EEPIRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNA 715
++P+RSH+DI + ++ K A K Y +A R A GH +DI++ DQ G+ EMK ++
Sbjct: 186 KDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDS 245
Query: 716 TG 717
TG
Sbjct: 246 TG 247
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 85
Score = 66.0 bits (161), Expect = 5e-14
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 10/82 (12%)
Query: 353 NLPPLQYE-PLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQ---- 407
P + + C R CR+ +NP + + W CNFC N P Q
Sbjct: 4 PPPLNEDGLIVRCRR--CRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMDQSDPNDPKS 61
Query: 408 -HQPAELHPQFTTIEYTIPLLY 428
+ E+ +EY P Y
Sbjct: 62 RYDRNEIK--CAVMEYMAPKEY 81
Score = 64.5 bits (157), Expect = 2e-13
Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 242 LPPLQYE-PLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQ----- 295
P + + C R CR+ +NP + + W CNFC N P Q
Sbjct: 5 PPLNEDGLIVRCRR--CRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMDQSDPNDPKSR 62
Query: 296 HQPAELHPQFTTIEYTIP 313
+ E+ +EY P
Sbjct: 63 YDRNEIK--CAVMEYMAP 78
>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 252
Score = 57.3 bits (138), Expect = 2e-09
Identities = 6/59 (10%), Positives = 17/59 (28%)
Query: 659 IRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNATG 717
+ K + Y+ + + V +D++ + D + + T
Sbjct: 162 ESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTA 220
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 32.4 bits (73), Expect = 0.20
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 455 QEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERETK 514
+ E + + E E QE Q E+ME R++ ++QE E+E
Sbjct: 220 AKMLHEMQRKNEQMMEQKERSYQEHL--KQLTEKMENDRVQLLKEQERTLALKLQEQEQL 277
Query: 515 MEEECQK 521
++E QK
Sbjct: 278 LKEGFQK 284
Score = 29.7 bits (66), Expect = 1.4
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 454 LQEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERET 513
LQ + + + + E +AE + ++ EM+ + + E +E +E +
Sbjct: 193 LQTDQTLTEKEKEIEVERVKAESAQAS--AKMLHEMQRKNEQMMEQKERSYQEHLKQLTE 250
Query: 514 KMEEECQK 521
KME + +
Sbjct: 251 KMENDRVQ 258
Score = 28.9 bits (64), Expect = 2.5
Identities = 12/86 (13%), Positives = 36/86 (41%)
Query: 435 ENDNVIRRNEIHIKPRICGLQEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRI 494
+ I + + + + ++ E ++ + +S + E + + Q Q++ +E
Sbjct: 187 SMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLK 246
Query: 495 EDEEDQEDGNEEIEDERETKMEEECQ 520
+ E E+ ++ E+E + + Q
Sbjct: 247 QLTEKMENDRVQLLKEQERTLALKLQ 272
Score = 28.2 bits (62), Expect = 4.2
Identities = 9/74 (12%), Positives = 24/74 (32%), Gaps = 7/74 (9%)
Query: 455 QEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIED----- 509
++ K + +++ ++ Q + + + + E E +E E
Sbjct: 222 MLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEG 281
Query: 510 --ERETKMEEECQK 521
+ M+ E Q
Sbjct: 282 FQKESRIMKNEIQD 295
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 30.2 bits (68), Expect = 0.46
Identities = 11/57 (19%), Positives = 24/57 (42%)
Query: 460 EEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERETKME 516
E+ FD ++ E E + +++E+ + + + E + + I TK E
Sbjct: 5 EDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYE 61
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 177
Score = 29.0 bits (65), Expect = 1.8
Identities = 4/23 (17%), Positives = 12/23 (52%)
Query: 759 CIQFITHYQAPSGEKKVRVTTIA 781
+Q + ++++R+ T+A
Sbjct: 141 YVQVAVLLSLNNSQRRIRIITLA 163
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 28.3 bits (63), Expect = 2.0
Identities = 11/65 (16%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 454 LQEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERET 513
E I++K ++++E E + + +++ E E + E+ + + +++
Sbjct: 42 PSLEEIQKK-LEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQ 100
Query: 514 KMEEE 518
KME
Sbjct: 101 KMESN 105
>d1q8ba_ d.58.4.6 (A:) Hypothetical protein YjcS {Bacillus subtilis
[TaxId: 1423]}
Length = 93
Score = 26.8 bits (59), Expect = 3.6
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 493 RIEDEEDQEDGNEEIEDERE-TKMEEECQKFG-HYNKDDPHSFQLPENFQMYPQFMYHLR 550
+I ++D + +E + E T EE C F + + L E ++ H
Sbjct: 10 KIISDKDLNEIMKEFKKLEEETNKEEGCITFHAYPLEPSERKIMLWEIWENEEAVKIHFT 69
Query: 551 RSQFLQVFNNSPDETSYY 568
+ + V E +
Sbjct: 70 KKHTIDVQKQELTEVEWL 87
>d2pd1a1 d.58.4.11 (A:1-100) Hypothetical protein NE2512
{Nitrosomonas europaea [TaxId: 915]}
Length = 100
Score = 26.6 bits (58), Expect = 4.8
Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 10/94 (10%)
Query: 493 RIEDEEDQEDGNEEI--EDERETKMEEECQKFGHYNKDDPHSFQLPENFQMYPQFMYHLR 550
R+E + QE + E + K P +F + + F HL
Sbjct: 9 RLEAKPGQEAALADFLASALPLANAESGTTAW-FALKFGPSTFGVFDAFADEAGRQAHLN 67
Query: 551 RSQFLQVFNNSPDETSYYRTLLIHLPHYSRFQFL 584
+ N+ LL P+ + + L
Sbjct: 68 GQIAAALMANAAT-------LLSSPPNIEKVELL 94
>d2gpia1 d.354.1.1 (A:1-90) Hypothetical protein Shew3726
{Shewanella loihica [TaxId: 359303]}
Length = 90
Score = 26.7 bits (59), Expect = 4.9
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 487 EEMEEQRIEDEEDQEDGNEEIE 508
EE E+ IE E G+ ++E
Sbjct: 66 EEQAEKLIEQEAFDVQGHIQVE 87
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.431
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,667,761
Number of extensions: 181127
Number of successful extensions: 416
Number of sequences better than 10.0: 1
Number of HSP's gapped: 406
Number of HSP's successfully gapped: 36
Length of query: 950
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 856
Effective length of database: 1,116,976
Effective search space: 956131456
Effective search space used: 956131456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.9 bits)