Query psy13072
Match_columns 257
No_of_seqs 254 out of 524
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 18:44:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzy_B Histone H2B; histone-fo 100.0 9.9E-53 3.4E-57 344.5 8.7 121 131-257 6-126 (126)
2 1tzy_B Histone H2B; histone-fo 100.0 6.9E-52 2.4E-56 339.5 8.9 126 1-126 1-126 (126)
3 2nqb_D Histone H2B; nucleosome 100.0 9.9E-52 3.4E-56 337.4 9.0 102 156-257 22-123 (123)
4 2nqb_D Histone H2B; nucleosome 100.0 1.2E-50 4E-55 331.1 9.3 120 5-126 4-123 (123)
5 2jss_A Chimera of histone H2B. 100.0 1.5E-42 5.1E-47 302.0 16.3 168 34-231 1-170 (192)
6 2jss_A Chimera of histone H2B. 100.0 8.1E-36 2.8E-40 259.6 9.1 92 165-256 1-92 (192)
7 3b0c_W CENP-W, centromere prot 99.5 1.1E-14 3.8E-19 109.2 6.8 66 170-235 7-72 (76)
8 1f1e_A Histone fold protein; a 99.5 2.1E-13 7.3E-18 115.3 14.6 141 41-235 9-149 (154)
9 3b0c_W CENP-W, centromere prot 99.5 4E-14 1.4E-18 106.2 6.8 65 40-104 8-72 (76)
10 1b67_A Protein (histone HMFA); 98.8 4.3E-09 1.5E-13 76.6 6.2 60 173-233 8-67 (68)
11 1b67_A Protein (histone HMFA); 98.7 2.1E-08 7.2E-13 72.9 6.1 60 42-102 8-67 (68)
12 3ksy_A SOS-1, SON of sevenless 98.7 2.5E-07 8.4E-12 96.9 15.8 149 35-232 20-168 (1049)
13 1f1e_A Histone fold protein; a 98.4 2.9E-07 1E-11 77.7 6.6 63 41-104 87-149 (154)
14 2yfw_B Histone H4, H4; cell cy 98.1 5.6E-06 1.9E-10 65.1 6.9 63 170-233 32-94 (103)
15 1tzy_D Histone H4-VI; histone- 98.1 6.5E-06 2.2E-10 64.7 6.8 63 170-233 32-94 (103)
16 1ku5_A HPHA, archaeal histon; 97.9 1.8E-05 6.3E-10 57.7 6.4 59 172-231 11-69 (70)
17 1tzy_D Histone H4-VI; histone- 97.9 2.7E-05 9.3E-10 61.1 7.3 62 40-102 33-94 (103)
18 2nqb_C Histone H2A; nucleosome 97.9 2.3E-05 7.8E-10 63.8 7.0 64 168-231 23-87 (123)
19 2yfw_B Histone H4, H4; cell cy 97.9 2.4E-05 8.1E-10 61.5 6.9 62 40-102 33-94 (103)
20 2f8n_G Core histone macro-H2A. 97.9 2.3E-05 7.8E-10 63.5 6.8 64 168-231 22-86 (120)
21 1tzy_A Histone H2A-IV; histone 97.9 3.1E-05 1E-09 63.5 7.0 64 168-231 25-89 (129)
22 1id3_C Histone H2A.1; nucleoso 97.9 2.6E-05 9E-10 64.1 6.6 64 168-231 25-89 (131)
23 2f8n_K Histone H2A type 1; nuc 97.8 3.7E-05 1.3E-09 64.6 6.8 64 168-231 44-108 (149)
24 1f66_C Histone H2A.Z; nucleoso 97.8 3E-05 1E-09 63.5 5.8 64 168-231 27-92 (128)
25 1ku5_A HPHA, archaeal histon; 97.7 5.9E-05 2E-09 55.0 6.3 59 41-100 11-69 (70)
26 1id3_B Histone H4; nucleosome 97.7 7.6E-05 2.6E-09 58.7 6.8 63 170-233 31-93 (102)
27 1n1j_A NF-YB; histone-like PAI 97.7 0.00015 5E-09 55.6 7.6 60 172-231 13-73 (93)
28 2l5a_A Histone H3-like centrom 97.6 0.00092 3.1E-08 59.8 13.0 187 34-233 13-226 (235)
29 2hue_C Histone H4; mini beta s 97.5 0.00012 4E-09 55.5 5.6 62 171-233 14-75 (84)
30 1id3_B Histone H4; nucleosome 97.5 0.0002 7E-09 56.3 6.6 62 40-102 32-93 (102)
31 3b0c_T CENP-T, centromere prot 97.4 0.00028 9.6E-09 56.3 6.7 61 171-232 11-71 (111)
32 1n1j_A NF-YB; histone-like PAI 97.4 0.00047 1.6E-08 52.8 7.6 60 41-100 13-73 (93)
33 1n1j_B NF-YC; histone-like PAI 97.4 0.00044 1.5E-08 53.6 7.0 59 173-232 25-84 (97)
34 1jfi_B DR1 protein, transcript 97.4 0.00053 1.8E-08 59.1 8.1 62 172-233 20-81 (179)
35 2hue_C Histone H4; mini beta s 97.3 0.0003 1E-08 53.3 5.4 62 40-102 14-75 (84)
36 4g92_C HAPE; transcription fac 97.3 0.00044 1.5E-08 55.6 6.4 58 173-231 47-105 (119)
37 3b0c_T CENP-T, centromere prot 97.3 0.0005 1.7E-08 54.8 6.5 61 40-101 11-71 (111)
38 1jfi_B DR1 protein, transcript 97.3 0.00076 2.6E-08 58.1 8.1 64 40-103 19-82 (179)
39 2byk_B Chrac-14; nucleosome sl 97.2 0.0008 2.7E-08 54.9 7.5 61 173-233 15-76 (128)
40 1id3_C Histone H2A.1; nucleoso 97.2 0.00061 2.1E-08 55.9 6.5 71 36-108 24-95 (131)
41 2hue_B Histone H3; mini beta s 97.2 0.0012 4.1E-08 49.7 7.4 65 168-232 8-72 (77)
42 1jfi_A Transcription regulator 97.2 0.00039 1.3E-08 54.1 4.7 59 172-231 16-75 (98)
43 1taf_B TFIID TBP associated fa 97.1 0.0013 4.5E-08 48.7 7.1 60 172-232 11-70 (70)
44 2nqb_C Histone H2A; nucleosome 97.1 0.0011 3.9E-08 53.7 6.9 70 36-107 22-92 (123)
45 2f8n_G Core histone macro-H2A. 97.1 0.0011 3.8E-08 53.6 6.7 70 36-107 21-91 (120)
46 2byk_B Chrac-14; nucleosome sl 97.1 0.0017 5.9E-08 52.9 7.7 65 41-105 14-79 (128)
47 3nqj_A Histone H3-like centrom 97.0 0.0018 6.1E-08 49.4 7.0 65 169-233 9-75 (82)
48 1tzy_A Histone H2A-IV; histone 97.0 0.0014 4.8E-08 53.6 6.9 70 36-107 24-94 (129)
49 1h3o_B Transcription initiatio 96.9 0.003 1E-07 47.5 7.5 59 173-231 11-69 (76)
50 2f8n_K Histone H2A type 1; nuc 96.9 0.0018 6E-08 54.4 6.7 69 37-107 44-113 (149)
51 1taf_A TFIID TBP associated fa 96.9 0.0044 1.5E-07 45.5 8.0 63 171-234 5-67 (68)
52 1n1j_B NF-YC; histone-like PAI 96.9 0.0023 7.7E-08 49.5 6.5 59 41-100 24-83 (97)
53 4g92_C HAPE; transcription fac 96.9 0.0019 6.4E-08 51.9 6.2 60 41-100 46-105 (119)
54 1f66_C Histone H2A.Z; nucleoso 96.8 0.0028 9.6E-08 51.8 6.6 73 35-109 25-99 (128)
55 1h3o_B Transcription initiatio 96.8 0.0044 1.5E-07 46.5 7.2 59 42-100 11-69 (76)
56 1tzy_C Histone H3; histone-fol 96.8 0.0042 1.4E-07 51.4 7.7 65 168-232 67-131 (136)
57 2yfv_A Histone H3-like centrom 96.7 0.0033 1.1E-07 49.5 6.7 66 167-232 31-99 (100)
58 1taf_B TFIID TBP associated fa 96.7 0.0057 1.9E-07 45.2 7.0 60 41-101 11-70 (70)
59 3nqu_A Histone H3-like centrom 96.6 0.0042 1.5E-07 51.6 6.7 66 168-233 66-133 (140)
60 3v9r_A MHF1, uncharacterized p 96.6 0.0052 1.8E-07 47.5 6.6 60 173-232 18-79 (90)
61 3r45_A Histone H3-like centrom 96.6 0.0039 1.3E-07 52.7 6.3 52 182-233 98-149 (156)
62 2hue_B Histone H3; mini beta s 96.5 0.009 3.1E-07 44.9 7.5 65 37-101 8-72 (77)
63 1taf_A TFIID TBP associated fa 96.5 0.014 4.8E-07 42.8 8.0 63 40-103 5-67 (68)
64 3b0b_B CENP-S, centromere prot 96.4 0.0031 1.1E-07 50.1 4.7 61 172-232 24-86 (107)
65 4dra_A Centromere protein S; D 96.4 0.0044 1.5E-07 49.9 5.5 60 173-232 33-94 (113)
66 1jfi_A Transcription regulator 96.4 0.0031 1E-07 49.0 4.4 60 40-100 15-75 (98)
67 2byk_A Chrac-16; nucleosome sl 96.1 0.01 3.5E-07 49.1 6.5 58 173-231 25-84 (140)
68 3nqj_A Histone H3-like centrom 96.1 0.016 5.4E-07 44.1 7.0 66 37-102 8-75 (82)
69 3vh5_A CENP-S; histone fold, c 96.1 0.0069 2.4E-07 50.3 5.4 60 173-232 25-86 (140)
70 3ksy_A SOS-1, SON of sevenless 96.1 0.016 5.5E-07 60.8 9.1 74 167-250 21-94 (1049)
71 3v9r_A MHF1, uncharacterized p 96.1 0.013 4.4E-07 45.3 6.3 59 42-100 18-78 (90)
72 1tzy_C Histone H3; histone-fol 95.9 0.023 7.9E-07 46.9 7.5 64 38-101 68-131 (136)
73 3b0b_B CENP-S, centromere prot 95.9 0.0079 2.7E-07 47.8 4.5 60 42-101 25-86 (107)
74 4dra_A Centromere protein S; D 95.8 0.011 3.6E-07 47.6 5.0 59 42-100 33-93 (113)
75 2ly8_A Budding yeast chaperone 95.7 0.017 5.7E-07 46.9 5.9 48 185-232 64-111 (121)
76 2yfv_A Histone H3-like centrom 95.7 0.026 8.9E-07 44.3 6.8 66 36-101 31-99 (100)
77 3vh5_A CENP-S; histone fold, c 95.5 0.016 5.5E-07 48.2 5.1 59 43-101 26-86 (140)
78 2ly8_A Budding yeast chaperone 95.4 0.024 8.2E-07 46.0 5.6 49 53-101 63-111 (121)
79 3nqu_A Histone H3-like centrom 95.3 0.034 1.1E-06 46.2 6.4 52 51-102 82-133 (140)
80 2byk_A Chrac-16; nucleosome sl 95.2 0.031 1.1E-06 46.1 6.0 59 41-100 24-84 (140)
81 3r45_A Histone H3-like centrom 95.0 0.062 2.1E-06 45.3 7.3 51 52-102 99-149 (156)
82 2l5a_A Histone H3-like centrom 93.8 0.11 3.7E-06 46.5 6.4 50 53-102 177-226 (235)
83 1bh9_B TAFII28; histone fold, 86.4 2.8 9.7E-05 31.9 7.4 61 173-234 22-83 (89)
84 1bh9_B TAFII28; histone fold, 74.9 12 0.00041 28.3 7.3 62 41-103 21-83 (89)
85 4dra_E Centromere protein X; D 70.9 18 0.00061 27.3 7.4 61 172-232 17-79 (84)
86 3b0b_C CENP-X, centromere prot 69.6 17 0.00058 27.2 6.9 57 172-232 13-75 (81)
87 4dra_E Centromere protein X; D 66.2 25 0.00084 26.5 7.3 57 40-100 16-78 (84)
88 3b0b_C CENP-X, centromere prot 65.0 22 0.00074 26.5 6.7 56 40-99 12-73 (81)
89 3aji_B S6C, proteasome (prosom 54.6 18 0.00061 25.6 4.6 35 202-236 40-74 (83)
90 3vlf_B 26S protease regulatory 52.3 16 0.00056 26.6 4.1 38 202-239 40-77 (88)
91 1g8p_A Magnesium-chelatase 38 48.0 35 0.0012 29.3 6.2 58 181-238 263-327 (350)
92 2dzn_B 26S protease regulatory 47.9 18 0.00062 25.8 3.7 35 203-237 38-72 (82)
93 2krk_A 26S protease regulatory 46.9 18 0.0006 26.5 3.5 35 202-236 50-84 (86)
94 3f9v_A Minichromosome maintena 46.3 19 0.00065 35.2 4.7 63 170-234 508-588 (595)
95 3aji_B S6C, proteasome (prosom 46.3 30 0.001 24.4 4.6 41 65-105 34-74 (83)
96 3vlf_B 26S protease regulatory 44.2 25 0.00086 25.5 4.0 41 66-106 35-75 (88)
97 3kw6_A 26S protease regulatory 42.9 25 0.00085 24.6 3.7 35 202-236 42-76 (78)
98 2i5u_A DNAD domain protein; st 40.2 68 0.0023 23.1 5.9 49 171-220 2-59 (83)
99 3f9v_A Minichromosome maintena 40.0 27 0.00093 34.0 4.7 65 37-103 506-588 (595)
100 3uk6_A RUVB-like 2; hexameric 38.7 1.6E+02 0.0056 25.3 9.1 76 169-246 264-343 (368)
101 2dzn_B 26S protease regulatory 38.6 28 0.00097 24.7 3.5 41 66-106 32-72 (82)
102 2krk_A 26S protease regulatory 37.8 27 0.00093 25.4 3.3 41 65-105 44-84 (86)
103 1g8p_A Magnesium-chelatase 38 36.6 61 0.0021 27.8 6.0 57 50-106 263-326 (350)
104 3kw6_A 26S protease regulatory 33.2 38 0.0013 23.6 3.4 40 66-105 37-76 (78)
105 2qby_A CDC6 homolog 1, cell di 32.0 2.1E+02 0.0072 24.3 8.6 68 169-236 202-275 (386)
106 3uk6_A RUVB-like 2; hexameric 29.0 2.8E+02 0.0094 23.9 9.0 69 39-109 265-337 (368)
107 2r44_A Uncharacterized protein 28.9 99 0.0034 26.6 6.0 56 183-238 224-302 (331)
108 3k1j_A LON protease, ATP-depen 26.0 2.3E+02 0.0079 27.2 8.6 64 169-232 295-374 (604)
109 2v1u_A Cell division control p 25.7 2.5E+02 0.0087 23.8 8.1 68 168-235 205-278 (387)
110 1lv7_A FTSH; alpha/beta domain 25.1 71 0.0024 26.4 4.2 34 203-236 222-255 (257)
111 1wwi_A Hypothetical protein TT 24.5 94 0.0032 25.8 4.7 44 183-226 17-60 (148)
112 1eia_A EIAV capsid protein P26 23.3 2.9E+02 0.01 23.7 7.9 81 72-183 57-160 (207)
113 2dhr_A FTSH; AAA+ protein, hex 22.6 5E+02 0.017 24.7 13.0 124 71-232 240-375 (499)
114 2i5u_A DNAD domain protein; st 22.3 1.8E+02 0.0063 20.7 5.5 48 40-88 2-58 (83)
115 3h4m_A Proteasome-activating n 22.0 1.4E+02 0.0048 24.8 5.5 36 201-236 226-261 (285)
116 2dhr_A FTSH; AAA+ protein, hex 21.8 1.2E+02 0.004 29.1 5.5 52 202-253 240-302 (499)
117 2qby_A CDC6 homolog 1, cell di 21.7 3.6E+02 0.012 22.8 8.2 66 39-104 203-274 (386)
118 3v9r_B MHF2, uncharacterized p 21.4 1.8E+02 0.0062 22.1 5.4 62 42-103 7-77 (88)
119 1lv7_A FTSH; alpha/beta domain 21.4 97 0.0033 25.6 4.3 35 71-105 221-255 (257)
No 1
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=100.00 E-value=9.9e-53 Score=344.53 Aligned_cols=121 Identities=83% Similarity=1.077 Sum_probs=91.5
Q ss_pred hhhhhccCCcchhhhhhcccccccccccccccccCCchhHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q psy13072 131 QFIMAAGKSSGKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESS 210 (257)
Q Consensus 131 ~~~~~~~~~~~k~~~k~~~~~~~~~~~~kk~~~~~~esy~~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs 210 (257)
...|++++++++..++.+. +++++++++++|+|++||||||||||||+|||++||+||||||||||||||.||+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~------~~~~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs 79 (126)
T 1tzy_B 6 KSAPAPKKGSKKAVTKTQK------KGDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEAS 79 (126)
T ss_dssp ----------------------------------CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccccchhhccccccc------CCCCCccccccccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555444333331 3456778889999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCcccChhHHHHHHHHhcchHHHhhHHhhhhhhhhcccCCC
Q psy13072 211 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257 (257)
Q Consensus 211 ~La~~~kr~Tit~reIqtAvrllLpgeLakhAv~eG~kAV~ky~ssk 257 (257)
+|++||+|+|||+||||+|||||||||||||||+|||+||++|++++
T Consensus 80 ~La~~nkr~TitsreIqtAvrLlLpGELaKhAvseGtkAV~ky~ssk 126 (126)
T 1tzy_B 80 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126 (126)
T ss_dssp HHHHHTTCSEECHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHcCCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHHhcccCCC
Confidence 99999999999999999999999999999999999999999999985
No 2
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=100.00 E-value=6.9e-52 Score=339.54 Aligned_cols=126 Identities=76% Similarity=1.005 Sum_probs=91.3
Q ss_pred CCCCCCCcchhhhhhcccccccccchhhcccccccchhHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q psy13072 1 MAAGKSSGKAVKKAGKAQKNIAKSDKKKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSR 80 (257)
Q Consensus 1 ~~~~~~~~~~~~k~~k~~~~~~~~~~~kk~~~k~~esy~~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~ 80 (257)
|+..+++..+.+|+++.+.++.+++..+++++++.|+|++||||||||||||+|||++||+||||||||||||||.||++
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~ 80 (126)
T 1tzy_B 1 MPEPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASR 80 (126)
T ss_dssp ---------------------------------CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccccchhhcccccccCCCCCccccccccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55344555556667777666665555677788899999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCChhHHHHHHHHhCChhHHHhHHHhhhhhhhhccCCC
Q psy13072 81 LAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126 (257)
Q Consensus 81 L~~~~kk~TltsreIqtAvrllLpGeLaKhAv~eG~kAV~ky~s~~ 126 (257)
|++||+++|||+||||+||||||||||+||||+||++||++|++++
T Consensus 81 La~~nkr~TitsreIqtAvrLlLpGELaKhAvseGtkAV~ky~ssk 126 (126)
T 1tzy_B 81 LAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126 (126)
T ss_dssp HHHHTTCSEECHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHcCCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHHhcccCCC
Confidence 9999999999999999999999999999999999999999999863
No 3
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=100.00 E-value=9.9e-52 Score=337.41 Aligned_cols=102 Identities=94% Similarity=1.246 Sum_probs=93.8
Q ss_pred cccccccccCCchhHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcc
Q psy13072 156 KSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP 235 (257)
Q Consensus 156 ~~~kk~~~~~~esy~~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrllLp 235 (257)
+++++++++++|+|++||||||||||||+|||++||+||||||||||||||.||++|++||+|+|||+||||+|||||||
T Consensus 22 ~~~~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLp 101 (123)
T 2nqb_D 22 KTDKKKKRKRKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLP 101 (123)
T ss_dssp -------CCCCCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSC
T ss_pred CCCCCCCccccchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCc
Confidence 34567778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhHHhhhhhhhhcccCCC
Q psy13072 236 GELAKHAVSEGTKAVTKYTSSK 257 (257)
Q Consensus 236 geLakhAv~eG~kAV~ky~ssk 257 (257)
||||||||+|||+||++|++++
T Consensus 102 GELaKhAvseGtkAV~ky~ss~ 123 (123)
T 2nqb_D 102 GELAKHAVSEGTKAVTKYTSSK 123 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhcccCCC
Confidence 9999999999999999999985
No 4
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=100.00 E-value=1.2e-50 Score=331.07 Aligned_cols=120 Identities=91% Similarity=1.187 Sum_probs=93.3
Q ss_pred CCCcchhhhhhcccccccccchhhcccccccchhHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy13072 5 KSSGKAVKKAGKAQKNIAKSDKKKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHY 84 (257)
Q Consensus 5 ~~~~~~~~k~~k~~~~~~~~~~~kk~~~k~~esy~~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~ 84 (257)
+++..+.+|+++.+.+.. +..+++++++.|+|++||||||||||||+|||++||+||||||||||||||.||++|++|
T Consensus 4 ~~~~~~~k~~~~~~~~~~--~~~~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~ 81 (123)
T 2nqb_D 4 KTSGKAAKKAGKAQKNIT--KTDKKKKRKRKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHY 81 (123)
T ss_dssp ---------------------------CCCCCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccccccccccccC--CCCCCCCccccchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566666655442 334666788999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChhHHHHHHHHhCChhHHHhHHHhhhhhhhhccCCC
Q psy13072 85 NKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126 (257)
Q Consensus 85 ~kk~TltsreIqtAvrllLpGeLaKhAv~eG~kAV~ky~s~~ 126 (257)
|+++|||+||||+||||||||||+||||+||++||++|++++
T Consensus 82 nkr~TitsreIqtAvrLlLpGELaKhAvseGtkAV~ky~ss~ 123 (123)
T 2nqb_D 82 NKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123 (123)
T ss_dssp TTCCEECHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCcCCHHHHHHHHHHhCcHHHHHHHHHHHHHHHhcccCCC
Confidence 999999999999999999999999999999999999999863
No 5
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=100.00 E-value=1.5e-42 Score=302.02 Aligned_cols=168 Identities=55% Similarity=0.759 Sum_probs=149.5
Q ss_pred ccchhHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhHHHhHHH
Q psy13072 34 RKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVS 113 (257)
Q Consensus 34 ~~esy~~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeLaKhAv~ 113 (257)
+.|+|++||||||||||||++||++||++||+|++|+|+||+.||++|+++++++|||+||||+||+|+|||||+|||++
T Consensus 1 ~~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpgeLak~Av~ 80 (192)
T 2jss_A 1 RKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVS 80 (192)
T ss_dssp CCSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSHHHHHHHH
T ss_pred CcchHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCCCCCcchhhhhccCCcchhhhhhcccccccccccccccccCCchhH-HHHHHHhhhcCC-CCCcchHHH
Q psy13072 114 EGTKAVTKYTSSKSNPLQFIMAAGKSSGKAVKKAGKAQKNIAKSDKKKKHRRKESYA-IYIYKVLKQVHP-DTGVSSKAM 191 (257)
Q Consensus 114 eG~kAV~ky~s~~~~pa~~~~~~~~~~~k~~~k~~~~~~~~~~~~kk~~~~~~esy~-~YI~kVLKQVhp-d~~ISskAM 191 (257)
||++||++|++++. ..+ ...+++- .|. ..|+|.||.... ...|+..|.
T Consensus 81 eG~kAv~k~~~sk~----------~~s--~s~ragl------------------~fPv~ri~R~lk~~~~a~~Rv~~~A~ 130 (192)
T 2jss_A 81 EGTRAVTKYSSSTQ----------AQS--SSARAGL------------------QFPVGRIKRYLKRHATGRTRVGSKAA 130 (192)
T ss_dssp HHHHHHHHHHHHCS----------SSC--HHHHSSC------------------CSCHHHHHHHHHHTTCSSCCCCTTTH
T ss_pred HHHHHHHhhccccc----------ccc--ccccCCC------------------cCCHHHHHHHHHhcCccccccccChH
Confidence 99999999987542 111 0112221 121 259999998744 468999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072 192 SIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 231 (257)
Q Consensus 192 ~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr 231 (257)
.+|...+.++...|.+.|.+.++.+++.+|++++||.|++
T Consensus 131 vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~ 170 (192)
T 2jss_A 131 IYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR 170 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 9999999999999999999999999999999999999999
No 6
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=100.00 E-value=8.1e-36 Score=259.58 Aligned_cols=92 Identities=80% Similarity=1.168 Sum_probs=89.5
Q ss_pred CCchhHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcchHHHhhHHh
Q psy13072 165 RKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVS 244 (257)
Q Consensus 165 ~~esy~~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrllLpgeLakhAv~ 244 (257)
++|+|++||||||||||||++||++||++||+|++|||||||.||++|+++++++|||+||||+||||+|||||+|||++
T Consensus 1 ~~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpgeLak~Av~ 80 (192)
T 2jss_A 1 RKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVS 80 (192)
T ss_dssp CCSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSHHHHHHHH
T ss_pred CcchHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcccCC
Q psy13072 245 EGTKAVTKYTSS 256 (257)
Q Consensus 245 eG~kAV~ky~ss 256 (257)
||++||++|+++
T Consensus 81 eG~kAv~k~~~s 92 (192)
T 2jss_A 81 EGTRAVTKYSSS 92 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhccc
Confidence 999999999653
No 7
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.53 E-value=1.1e-14 Score=109.17 Aligned_cols=66 Identities=18% Similarity=0.220 Sum_probs=63.3
Q ss_pred HHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcc
Q psy13072 170 AIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP 235 (257)
Q Consensus 170 ~~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrllLp 235 (257)
..+|+|++||+|||.+||.+|+.+|+.+++++++.|+.||..+|.+++|.||+++||+.|++.+|-
T Consensus 7 ~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll~ 72 (76)
T 3b0c_W 7 RGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVILK 72 (76)
T ss_dssp HHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999999999999999999999999999998873
No 8
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.52 E-value=2.1e-13 Score=115.29 Aligned_cols=141 Identities=17% Similarity=0.304 Sum_probs=120.2
Q ss_pred HHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhHHHhHHHhhhhhhh
Q psy13072 41 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120 (257)
Q Consensus 41 yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeLaKhAv~eG~kAV~ 120 (257)
-|-|++|+.-|+..||..|-.-|...+..+.+-|+.+|..++...+|+||+..||..|+.-|--+ -|.
T Consensus 9 ~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~------------~v~ 76 (154)
T 1f1e_A 9 AIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVE------------GVE 76 (154)
T ss_dssp HHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCT------------TST
T ss_pred HHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccc------------cCC
Confidence 37899999989999999999999999999999999999999999999999999999998433222 111
Q ss_pred hccCCCCCcchhhhhccCCcchhhhhhcccccccccccccccccCCchhHHHHHHHhhhcCCCCCcchHHHHHHHHHHHH
Q psy13072 121 KYTSSKSNPLQFIMAAGKSSGKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVND 200 (257)
Q Consensus 121 ky~s~~~~pa~~~~~~~~~~~k~~~k~~~~~~~~~~~~kk~~~~~~esy~~YI~kVLKQVhpd~~ISskAM~imnSfvnD 200 (257)
....-. .|+ .=|.|++|+. ....||+.|...|..++.+
T Consensus 77 d~~~l~-----------------lP~------------------------a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~ 114 (154)
T 1f1e_A 77 DYDGEL-----------------FGR------------------------ATVRRILKRA-GIERASSDAVDLYNKLICR 114 (154)
T ss_dssp TCCSCC-----------------CCH------------------------HHHHHHHHHT-TCCEECHHHHHHHHHHHHH
T ss_pred cccccc-----------------CCc------------------------cHHHHHHHHc-CCccchHHHHHHHHHHHHH
Confidence 111000 001 1288999998 7889999999999999999
Q ss_pred HHHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcc
Q psy13072 201 IFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP 235 (257)
Q Consensus 201 iferIa~EAs~La~~~kr~Tit~reIqtAvrllLp 235 (257)
+.+.|+.+|..+|++.+|+||+++||+.|++..||
T Consensus 115 f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~~ 149 (154)
T 1f1e_A 115 ATEELGEKAAEYADEDGRKTVQGEDVEKAITYSMP 149 (154)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999
No 9
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.49 E-value=4e-14 Score=106.16 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=62.8
Q ss_pred HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCC
Q psy13072 40 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP 104 (257)
Q Consensus 40 ~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLp 104 (257)
.+|+|++||+|||..||.+|+.+|+.++.++++.|+.||..++..++++||+.+||+.|++.+|-
T Consensus 8 A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll~ 72 (76)
T 3b0c_W 8 GTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVILK 72 (76)
T ss_dssp HHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999998873
No 10
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.85 E-value=4.3e-09 Score=76.58 Aligned_cols=60 Identities=27% Similarity=0.384 Sum_probs=57.8
Q ss_pred HHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072 173 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 233 (257)
Q Consensus 173 I~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll 233 (257)
|.|++|++ ++..||+.|+..|..++.++++.|+++|...+.+.+|.||+++|||.|++.|
T Consensus 8 v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 8 IGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp HHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred HHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 78999999 8999999999999999999999999999999999999999999999999865
No 11
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.71 E-value=2.1e-08 Score=72.88 Aligned_cols=60 Identities=27% Similarity=0.384 Sum_probs=57.8
Q ss_pred HHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHh
Q psy13072 42 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 102 (257)
Q Consensus 42 I~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrll 102 (257)
|.|++|++ ++..||+.|+..|...+.++++.|+.+|..++.+.+|+||+.+|||.|++.|
T Consensus 8 v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 8 IGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp HHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred HHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 78999999 8999999999999999999999999999999999999999999999999865
No 12
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=98.69 E-value=2.5e-07 Score=96.87 Aligned_cols=149 Identities=15% Similarity=0.205 Sum_probs=120.9
Q ss_pred cchhHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhHHHhHHHh
Q psy13072 35 KESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 114 (257)
Q Consensus 35 ~esy~~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeLaKhAv~e 114 (257)
..-|-.-|+|||.||||+++|.-.|+.-+++++--++-.|+. ....|..|+...|.-.+|++|.++|+.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (1049)
T 3ksy_A 20 RGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQ----------AQPRSASDVEERVQKSFPHPIDKWAIAD 89 (1049)
T ss_dssp SSSSHHHHHHHHHHHCTTSBCCHHHHHHHHHHHHHHHHHHHH----------TCCCSHHHHHHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCccHhHHHHHHHHHHHHHHHHhc----------CCCccHHHHHHHHHHhCCCchHHHHHHH
Confidence 455778899999999999999999999999998777766653 4678899999999999999999999999
Q ss_pred hhhhhhhccCCCCCcchhhhhccCCcchhhhhhcccccccccccccccccCCchhHHHHHHHhhhcCCCCCcchHHHHHH
Q psy13072 115 GTKAVTKYTSSKSNPLQFIMAAGKSSGKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIM 194 (257)
Q Consensus 115 G~kAV~ky~s~~~~pa~~~~~~~~~~~k~~~k~~~~~~~~~~~~kk~~~~~~esy~~YI~kVLKQVhpd~~ISskAM~im 194 (257)
+-.++..-.+ ++|-.=+. .-|+|.||.. ....|+..|.-+|
T Consensus 90 ~~~~~~~~~~---------------------~~~l~~pv-----------------~~~~~~l~~~-~~~r~~~~~~~y~ 130 (1049)
T 3ksy_A 90 AQSAIEKRKR---------------------RNPLSLPV-----------------EKIHPLLKEV-LGYKIDHQVSVYI 130 (1049)
T ss_dssp HHHHHTTCCC---------------------SSSCSSCH-----------------HHHHHHHHHH-HCSCCCHHHHHHH
T ss_pred HHHhhhcccc---------------------cCCccccH-----------------HHHHHHhhcc-cccccCCCCcchh
Confidence 6544322111 11111111 1288888544 4569999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072 195 NSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 232 (257)
Q Consensus 195 nSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl 232 (257)
...+.++--.|.+-|++-++.+++..|++|+||.|++-
T Consensus 131 ~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 131 VAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 99999999999999999999999999999999999974
No 13
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.44 E-value=2.9e-07 Score=77.73 Aligned_cols=63 Identities=19% Similarity=0.362 Sum_probs=61.0
Q ss_pred HHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCC
Q psy13072 41 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP 104 (257)
Q Consensus 41 yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLp 104 (257)
-|.|++|+. ....||+.|...|..++.++.+.|+.+|..++++.+|+||+.+||+.|++..||
T Consensus 87 ~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~~ 149 (154)
T 1f1e_A 87 TVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSMP 149 (154)
T ss_dssp HHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSG
T ss_pred HHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcCC
Confidence 489999998 778999999999999999999999999999999999999999999999999999
No 14
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=98.11 E-value=5.6e-06 Score=65.13 Aligned_cols=63 Identities=14% Similarity=0.179 Sum_probs=58.9
Q ss_pred HHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072 170 AIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 233 (257)
Q Consensus 170 ~~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll 233 (257)
.-.|.|+++.... ..||..|...|..++.++++.|+.+|..++++++|.||+++||+.|++-+
T Consensus 32 ~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 32 KPAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 3468999999877 68999999999999999999999999999999999999999999999965
No 15
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=98.09 E-value=6.5e-06 Score=64.71 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=58.9
Q ss_pred HHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072 170 AIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 233 (257)
Q Consensus 170 ~~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll 233 (257)
.-.|.|+++.... ..||..|...|..++.++++.|+.+|..++++++|.|||++||+.|++-+
T Consensus 32 ~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 32 KPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 3478999999877 68999999999999999999999999999999999999999999999965
No 16
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=97.94 E-value=1.8e-05 Score=57.72 Aligned_cols=59 Identities=17% Similarity=0.340 Sum_probs=55.2
Q ss_pred HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072 172 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 231 (257)
Q Consensus 172 YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr 231 (257)
-|.|++|.. ....||+.+..-|..++.++++.|+.+|...+.+.+|.||+.+||+.|++
T Consensus 11 ~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 11 PVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp HHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 478999987 47899999999999999999999999999999999999999999999985
No 17
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=97.91 E-value=2.7e-05 Score=61.14 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=58.4
Q ss_pred HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHh
Q psy13072 40 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 102 (257)
Q Consensus 40 ~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrll 102 (257)
..|.|+++..-. ..||..+...|..++.++++.|+.+|..++++.+|+|||.+||+.|++-+
T Consensus 33 ~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 33 PAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 579999999877 68999999999999999999999999999999999999999999999965
No 18
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=97.91 E-value=2.3e-05 Score=63.77 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=59.3
Q ss_pred hhH-HHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072 168 SYA-IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 231 (257)
Q Consensus 168 sy~-~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr 231 (257)
.|- ..|+|+|++...-..|+..|..+|...+.++...|.+.|.+.++.+++.+|++++||.||+
T Consensus 23 ~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 23 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 454 4799999998666699999999999999999999999999999999999999999999999
No 19
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=97.90 E-value=2.4e-05 Score=61.53 Aligned_cols=62 Identities=15% Similarity=0.184 Sum_probs=58.5
Q ss_pred HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHh
Q psy13072 40 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 102 (257)
Q Consensus 40 ~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrll 102 (257)
..|.|+++..-. ..||..+...|..++.++++.|+.+|..++++.+|+||+.+||+.|++-+
T Consensus 33 ~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 33 PAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 479999999877 68999999999999999999999999999999999999999999999965
No 20
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=97.89 E-value=2.3e-05 Score=63.52 Aligned_cols=64 Identities=22% Similarity=0.298 Sum_probs=59.6
Q ss_pred hhHH-HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072 168 SYAI-YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 231 (257)
Q Consensus 168 sy~~-YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr 231 (257)
.|-. .|+|.|+....-..|+..|-.+|...+.++...|.+.|.+.++.+++.+|++++||.||+
T Consensus 22 qfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 22 IFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp SSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 3443 799999998777799999999999999999999999999999999999999999999999
No 21
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=97.85 E-value=3.1e-05 Score=63.54 Aligned_cols=64 Identities=19% Similarity=0.292 Sum_probs=59.1
Q ss_pred hhHH-HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072 168 SYAI-YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 231 (257)
Q Consensus 168 sy~~-YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr 231 (257)
.|-. .|+|+|+....-..||..|-.+|...+.++...|.+.|.+.++.+++.+|++++||.||+
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 25 QFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp SSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 3443 799999997666699999999999999999999999999999999999999999999999
No 22
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.85 E-value=2.6e-05 Score=64.09 Aligned_cols=64 Identities=19% Similarity=0.307 Sum_probs=59.2
Q ss_pred hhHH-HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072 168 SYAI-YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 231 (257)
Q Consensus 168 sy~~-YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr 231 (257)
.|-. .|+|+|+....-..|+..|..+|...+.++...|.+.|.+.++.+++.+|++|+||.||+
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 25 TFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp SSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 4544 799999997556699999999999999999999999999999999999999999999999
No 23
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=97.80 E-value=3.7e-05 Score=64.59 Aligned_cols=64 Identities=19% Similarity=0.296 Sum_probs=59.3
Q ss_pred hhHH-HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072 168 SYAI-YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 231 (257)
Q Consensus 168 sy~~-YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr 231 (257)
.|-. .|+|+||....-..|+..|-.+|...+.++...|.+.|.+.|+.+++.+|++|+||.||+
T Consensus 44 qFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~ 108 (149)
T 2f8n_K 44 QFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 108 (149)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh
Confidence 3443 799999998666799999999999999999999999999999999999999999999999
No 24
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=97.78 E-value=3e-05 Score=63.48 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=58.5
Q ss_pred hhHH-HHHHHhhhcCC-CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072 168 SYAI-YIYKVLKQVHP-DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 231 (257)
Q Consensus 168 sy~~-YI~kVLKQVhp-d~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr 231 (257)
.|-. .|+|.|+.... ...|+..|-.+|...+.++...|.+.|.+.++.+++.+|++|+||.||+
T Consensus 27 qfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~ 92 (128)
T 1f66_C 27 QFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 92 (128)
T ss_dssp SSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred cCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 4544 79999998864 3589999999999999999999999999999999999999999999998
No 25
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=97.74 E-value=5.9e-05 Score=55.00 Aligned_cols=59 Identities=17% Similarity=0.340 Sum_probs=55.2
Q ss_pred HHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHH
Q psy13072 41 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 100 (257)
Q Consensus 41 yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvr 100 (257)
-|.|++|.. ....||..+...|.-++.++++.|+.+|..++.+.+|+||+.+||+.|++
T Consensus 11 ~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 11 PVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp HHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 578899987 57899999999999999999999999999999999999999999999975
No 26
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.70 E-value=7.6e-05 Score=58.73 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=57.9
Q ss_pred HHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072 170 AIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 233 (257)
Q Consensus 170 ~~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll 233 (257)
.-.|.|+++..-+ ..||..+...|..++.++++.|+.||..++++.+|.|||..||..|++.+
T Consensus 31 ~~~I~Rlar~~Gv-~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 31 KPAIRRLARRGGV-KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp HHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 3468899998754 77999999999999999999999999999999999999999999999864
No 27
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.65 E-value=0.00015 Score=55.63 Aligned_cols=60 Identities=23% Similarity=0.378 Sum_probs=56.8
Q ss_pred HHHHHhhhcCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072 172 YIYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 231 (257)
Q Consensus 172 YI~kVLKQVhpd-~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr 231 (257)
=|.|+.|..-|| ..||..|...|.-....+...|+.+|...|...+|.||+..||+.|++
T Consensus 13 ~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 13 NVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp HHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 388999999775 789999999999999999999999999999999999999999999998
No 28
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.00092 Score=59.82 Aligned_cols=187 Identities=19% Similarity=0.319 Sum_probs=113.9
Q ss_pred ccchhHHHHHHHhhhhCC---CCCcchHHHHHHHH----HHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHh----
Q psy13072 34 RKESYAIYIYKVLKQVHP---DTGVSSKAMSIMNS----FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL---- 102 (257)
Q Consensus 34 ~~esy~~yI~KVLKqVhp---d~~ISskam~imnS----fv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrll---- 102 (257)
++-.|+..+..+..+..+ |+-+.+.|+.-|-- |+-.+|| .+.-.+.+.+|-||.++|||-|-|+-
T Consensus 13 ~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFE----d~nLcaiHAkRVTim~kDiqLarrirg~~~ 88 (235)
T 2l5a_A 13 SKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLE----HTNLLALHAKRITIMKKDMQLARRIRGQFL 88 (235)
T ss_dssp SCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHSTTTSGGGTTHHHHHHTSSCSCC
T ss_pred cCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHh----hhHHHHhcccccccchhhHHHHHHHhhccC
Confidence 466788888888777665 78999999976644 5555555 45566778899999999999999963
Q ss_pred CChhH-HHhHH-Hhhhhh-----hhhccCCCCCcchhhhhccCCcchhhhhhcccccccc-cccccccccCCchhHHHHH
Q psy13072 103 LPGEL-AKHAV-SEGTKA-----VTKYTSSKSNPLQFIMAAGKSSGKAVKKAGKAQKNIA-KSDKKKKHRRKESYAIYIY 174 (257)
Q Consensus 103 LpGeL-aKhAv-~eG~kA-----V~ky~s~~~~pa~~~~~~~~~~~k~~~k~~~~~~~~~-~~~kk~~~~~~esy~~YI~ 174 (257)
.|-|+ .+|+- .+-+|. ..+|.+...-+-+-++. +|.-....|-- .+-. ++.- +-..+.|..-+.
T Consensus 89 ~p~evme~~~~~~~~~k~~~~~i~~ky~~~~~~gd~idl~----tG~iv~dnGh~-~~l~~~~~~---~~~~~r~~~vLr 160 (235)
T 2l5a_A 89 VPRGSMERHKLADENMRKVWSNIISKYESIEEQGDLVDLK----TGEIVEDNGHI-KTLTANNST---KDKRTKYTSVLR 160 (235)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCSSS----SCCCCCCCCCC-CSCCCCCGG---GCCSSTHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccCC----CCceeeeCcHH-HHhhcCCCC---CccchhHHHHHH
Confidence 23221 12221 122222 23666532211111111 11111111100 0000 0000 001133444433
Q ss_pred HHhhhcC-----C---CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072 175 KVLKQVH-----P---DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 233 (257)
Q Consensus 175 kVLKQVh-----p---d~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll 233 (257)
-++. +- . =-.||..+..-+...+.++++.|+.+|..++.+.+|+|+|+.||-.|++..
T Consensus 161 D~i~-i~~~RlaRrgGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 161 DIID-ISDEEDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp HHHH-HTCCTTSCCTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred Hhhc-ccHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence 3332 21 1 135899999999999999999999999999999999999999999999854
No 29
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=97.54 E-value=0.00012 Score=55.53 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=56.7
Q ss_pred HHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072 171 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 233 (257)
Q Consensus 171 ~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll 233 (257)
-.|.|+.+.... ..||..+..-|..++.+.++.|+.+|..++++.+|+||+..||..|++-+
T Consensus 14 ~~I~Riar~~Gv-~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 14 PAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp HHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred HHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 358899998754 77999999999999999999999999999999999999999999998854
No 30
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.50 E-value=0.0002 Score=56.27 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=57.4
Q ss_pred HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHh
Q psy13072 40 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 102 (257)
Q Consensus 40 ~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrll 102 (257)
..|.|+++..-+ ..||..+...|..++.++++.|+.||..++++.+|+|||..||..|++-+
T Consensus 32 ~~I~Rlar~~Gv-~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 32 PAIRRLARRGGV-KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp HHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 478999998754 67999999999999999999999999999999999999999999999865
No 31
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=97.43 E-value=0.00028 Score=56.27 Aligned_cols=61 Identities=16% Similarity=0.280 Sum_probs=56.5
Q ss_pred HHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072 171 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 232 (257)
Q Consensus 171 ~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl 232 (257)
..|.|+.+.. ....||..+...|..++.++++.|+.+|..++.+.+|+||+..||..|++-
T Consensus 11 a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr 71 (111)
T 3b0c_T 11 SLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRR 71 (111)
T ss_dssp HHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 4578888776 688999999999999999999999999999999999999999999999885
No 32
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.42 E-value=0.00047 Score=52.79 Aligned_cols=60 Identities=23% Similarity=0.378 Sum_probs=56.5
Q ss_pred HHHHHhhhhCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHH
Q psy13072 41 YIYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 100 (257)
Q Consensus 41 yI~KVLKqVhpd-~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvr 100 (257)
-|.|+.|..-|| ..||..|...|.-....+...|+.+|...+...+|+||+..||+.|++
T Consensus 13 ~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 13 NVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp HHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 488999999775 789999999999999999999999999999999999999999999998
No 33
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.37 E-value=0.00044 Score=53.55 Aligned_cols=59 Identities=20% Similarity=0.220 Sum_probs=54.7
Q ss_pred HHHHhhhcCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072 173 IYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 232 (257)
Q Consensus 173 I~kVLKQVhpd-~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl 232 (257)
|.|++|.- || ..||..|-.+|.-....+.+.|+++|...+..++|.||+.+||+.||+-
T Consensus 25 IkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~ 84 (97)
T 1n1j_B 25 IKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITK 84 (97)
T ss_dssp HHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhc
Confidence 88999976 77 5599999999999999999999999999999999999999999999863
No 34
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.36 E-value=0.00053 Score=59.10 Aligned_cols=62 Identities=19% Similarity=0.371 Sum_probs=58.8
Q ss_pred HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072 172 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 233 (257)
Q Consensus 172 YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll 233 (257)
=|.|++|.+-|+..||..|...|.-.+..+..-|+.+|..+|...+|+||+..||..|+.-+
T Consensus 20 ~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~L 81 (179)
T 1jfi_B 20 AINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESL 81 (179)
T ss_dssp HHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhc
Confidence 48899999999999999999999999999999999999999999999999999999998743
No 35
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=97.33 E-value=0.0003 Score=53.28 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=56.6
Q ss_pred HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHh
Q psy13072 40 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 102 (257)
Q Consensus 40 ~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrll 102 (257)
..|.|+.+..-. ..||..+...|..++.++++.|+.||..++.+.+|+||+..||..|++-+
T Consensus 14 ~~I~Riar~~Gv-~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 14 PAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp HHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred HHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 368899998855 67999999999999999999999999999999999999999999998754
No 36
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=97.30 E-value=0.00044 Score=55.61 Aligned_cols=58 Identities=24% Similarity=0.282 Sum_probs=54.1
Q ss_pred HHHHhhhcCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072 173 IYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 231 (257)
Q Consensus 173 I~kVLKQVhpd-~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr 231 (257)
|.|++|.. || ..||..|..+|.-....+...|+++|...|..++|.||+.+||+.||+
T Consensus 47 IkrImK~d-~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~ 105 (119)
T 4g92_C 47 IKKVMKAD-PEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALS 105 (119)
T ss_dssp HHHHHHTS-TTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred HHHHHhhC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHh
Confidence 88999976 55 569999999999999999999999999999999999999999999996
No 37
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=97.28 E-value=0.0005 Score=54.81 Aligned_cols=61 Identities=16% Similarity=0.280 Sum_probs=56.7
Q ss_pred HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072 40 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 101 (257)
Q Consensus 40 ~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl 101 (257)
..|.|+.+.. ....||..+...|..++.++++.|+.+|..++.+.+|+||+..||..|++-
T Consensus 11 a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr 71 (111)
T 3b0c_T 11 SLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRR 71 (111)
T ss_dssp HHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 4688888877 678999999999999999999999999999999999999999999999885
No 38
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.28 E-value=0.00076 Score=58.14 Aligned_cols=64 Identities=19% Similarity=0.332 Sum_probs=59.6
Q ss_pred HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhC
Q psy13072 40 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLL 103 (257)
Q Consensus 40 ~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllL 103 (257)
.=|.|++|++-|+..||..|...|.-.+..+..-|+.||..++...+|+||+..||..|+.-+-
T Consensus 19 A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~Lg 82 (179)
T 1jfi_B 19 AAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLG 82 (179)
T ss_dssp HHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcC
Confidence 3589999999999999999999999999999999999999999999999999999999998543
No 39
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=97.24 E-value=0.0008 Score=54.87 Aligned_cols=61 Identities=25% Similarity=0.341 Sum_probs=57.2
Q ss_pred HHHHhhhcCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072 173 IYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 233 (257)
Q Consensus 173 I~kVLKQVhpd-~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll 233 (257)
|.|++|++-|| ..||..|...|.-...-+...|+.+|..++...+|+||+..||..|+.-+
T Consensus 15 I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l 76 (128)
T 2byk_B 15 IGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTEL 76 (128)
T ss_dssp HHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred HHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHc
Confidence 88999988775 67999999999999999999999999999999999999999999999864
No 40
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.21 E-value=0.00061 Score=55.92 Aligned_cols=71 Identities=20% Similarity=0.245 Sum_probs=61.8
Q ss_pred chhH-HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhHH
Q psy13072 36 ESYA-IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELA 108 (257)
Q Consensus 36 esy~-~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeLa 108 (257)
-.|. ..|+|+|++..--..|+..|...|...+.++...|.+.|.+.++.+++.+|++|+||.|++ -..||-
T Consensus 24 LqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~--nDeEL~ 95 (131)
T 1id3_C 24 LTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR--NDDELN 95 (131)
T ss_dssp CSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH--TCHHHH
T ss_pred eecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh--ccHHHH
Confidence 3565 4899999997555689999999999999999999999999999999999999999999999 455553
No 41
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=97.19 E-value=0.0012 Score=49.74 Aligned_cols=65 Identities=18% Similarity=0.251 Sum_probs=56.4
Q ss_pred hhHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072 168 SYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 232 (257)
Q Consensus 168 sy~~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl 232 (257)
.|..-+..+.....+|..+++.|+.-|.-...+....+.++|..++.+.+|.||.++|||.|.|+
T Consensus 8 PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~ri 72 (77)
T 2hue_B 8 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRI 72 (77)
T ss_dssp HHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHH
Confidence 35555555555556789999999999999999999999999999999999999999999999986
No 42
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.16 E-value=0.00039 Score=54.07 Aligned_cols=59 Identities=12% Similarity=0.272 Sum_probs=51.6
Q ss_pred HHHHHhhhcCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072 172 YIYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 231 (257)
Q Consensus 172 YI~kVLKQVhpd-~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr 231 (257)
=|.|++|. .|| ..||..|--+|.-....+.+.|+++|.+.++.++|.||+.+||+.||+
T Consensus 16 RIkrimK~-~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~ 75 (98)
T 1jfi_A 16 RIKKIMQT-DEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIE 75 (98)
T ss_dssp HHHHHHTT-STTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred HHHHHHHc-CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHh
Confidence 38899996 566 679999999999999999999999999999999999999999999986
No 43
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.14 E-value=0.0013 Score=48.67 Aligned_cols=60 Identities=15% Similarity=0.279 Sum_probs=53.4
Q ss_pred HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072 172 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 232 (257)
Q Consensus 172 YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl 232 (257)
.|.++.+++.- ..+|..+-..|-.-+.+....|+.||.++++..+|.|||..||..|+++
T Consensus 11 ~v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 11 SMKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp HHHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred HHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence 46777777753 4789999999999999999999999999999999999999999999864
No 44
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=97.10 E-value=0.0011 Score=53.74 Aligned_cols=70 Identities=20% Similarity=0.231 Sum_probs=61.6
Q ss_pred chhH-HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhH
Q psy13072 36 ESYA-IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL 107 (257)
Q Consensus 36 esy~-~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeL 107 (257)
-.|. ..|+|+|++..--..|+..|...|...+..+...|.+.|.+.++.+++.+|++++||.|++ -..||
T Consensus 22 L~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~--nDeEL 92 (123)
T 2nqb_C 22 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR--NDEEL 92 (123)
T ss_dssp CSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH--TSHHH
T ss_pred eeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh--ccHHH
Confidence 3555 4899999998555689999999999999999999999999999999999999999999999 45555
No 45
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=97.07 E-value=0.0011 Score=53.56 Aligned_cols=70 Identities=23% Similarity=0.242 Sum_probs=61.7
Q ss_pred chhH-HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhH
Q psy13072 36 ESYA-IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL 107 (257)
Q Consensus 36 esy~-~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeL 107 (257)
-.|. ..|+|+|+.......|+..|-..|...+..+...|.+.|.+.++.+++.+|++++||.|++ -..||
T Consensus 21 LqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~--nDeEL 91 (120)
T 2f8n_G 21 VIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA--NDEEL 91 (120)
T ss_dssp CSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH--TSHHH
T ss_pred ccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh--cCHHH
Confidence 3455 4899999998766789999999999999999999999999999999999999999999999 44455
No 46
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=97.05 E-value=0.0017 Score=52.89 Aligned_cols=65 Identities=23% Similarity=0.270 Sum_probs=58.8
Q ss_pred HHHHHhhhhCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCCh
Q psy13072 41 YIYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 105 (257)
Q Consensus 41 yI~KVLKqVhpd-~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpG 105 (257)
-|.|++|++-|| ..||..|...|.-....+...|+.+|..++...+|+||+..||..|+.-+-=.
T Consensus 14 ~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~ 79 (128)
T 2byk_B 14 VIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFE 79 (128)
T ss_dssp HHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCT
T ss_pred HHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcH
Confidence 488999988775 68999999999999999999999999999999999999999999999875433
No 47
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=97.03 E-value=0.0018 Score=49.37 Aligned_cols=65 Identities=12% Similarity=0.172 Sum_probs=54.3
Q ss_pred hHHHHHHHhhhcC--CCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072 169 YAIYIYKVLKQVH--PDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 233 (257)
Q Consensus 169 y~~YI~kVLKQVh--pd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll 233 (257)
|..-+..+-.+.. .|..+++.|+.-|---..+..-.+.++|.-+|.+.+|.||.++|||.|.|+-
T Consensus 9 F~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rir 75 (82)
T 3nqj_A 9 FSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 75 (82)
T ss_dssp HHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHc
Confidence 4444444444433 4789999999999999999999999999999999999999999999999973
No 48
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=97.02 E-value=0.0014 Score=53.63 Aligned_cols=70 Identities=20% Similarity=0.232 Sum_probs=61.5
Q ss_pred chhH-HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhH
Q psy13072 36 ESYA-IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL 107 (257)
Q Consensus 36 esy~-~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeL 107 (257)
-.|. ..|+|+|++..--..|+..|...|...+..+...|.+.|.+.++.+++.+|++++||.|++ -..||
T Consensus 24 LqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~--nDeEL 94 (129)
T 1tzy_A 24 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR--NDEEL 94 (129)
T ss_dssp CSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH--TSHHH
T ss_pred eeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh--ccHHH
Confidence 3455 4899999997555699999999999999999999999999999999999999999999999 44555
No 49
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=96.94 E-value=0.003 Score=47.49 Aligned_cols=59 Identities=17% Similarity=0.406 Sum_probs=55.8
Q ss_pred HHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072 173 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 231 (257)
Q Consensus 173 I~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr 231 (257)
+...++||-|...|...+.+.|-.+.+|+.+.+++.|++||.+.+-.||..+|||....
T Consensus 11 L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le 69 (76)
T 1h3o_B 11 LQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE 69 (76)
T ss_dssp HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 66889999999999999999999999999999999999999999999999999997654
No 50
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=96.92 E-value=0.0018 Score=54.38 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=61.0
Q ss_pred hhH-HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhH
Q psy13072 37 SYA-IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL 107 (257)
Q Consensus 37 sy~-~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeL 107 (257)
.|. ..|+|+|++..--..|+..|...|...+.++...|.+.|.+.++.+++.+|++|+||.|++ -..||
T Consensus 44 qFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~--nDeEL 113 (149)
T 2f8n_K 44 QFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR--NDEEL 113 (149)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH--HSHHH
T ss_pred eccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh--ccHHH
Confidence 455 4899999998666689999999999999999999999999999999999999999999999 34455
No 51
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=96.91 E-value=0.0044 Score=45.54 Aligned_cols=63 Identities=16% Similarity=0.252 Sum_probs=56.1
Q ss_pred HHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHhc
Q psy13072 171 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLL 234 (257)
Q Consensus 171 ~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrllL 234 (257)
.-|.++||...- ...|..+...|.-|+......|+.+|..++.+.+|.||+..||..|+...+
T Consensus 5 ~~i~~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~~ 67 (68)
T 1taf_A 5 QVIMSILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVTL 67 (68)
T ss_dssp HHHHHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcc
Confidence 457888987543 477999999999999999999999999999999999999999999998654
No 52
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=96.87 E-value=0.0023 Score=49.53 Aligned_cols=59 Identities=20% Similarity=0.222 Sum_probs=53.4
Q ss_pred HHHHHhhhhCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHH
Q psy13072 41 YIYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 100 (257)
Q Consensus 41 yI~KVLKqVhpd-~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvr 100 (257)
=|.|++|.- || ..||..|.-.|.-..-.+...|+.+|...+..++|+||+.+||+.||+
T Consensus 24 rIkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~ 83 (97)
T 1n1j_B 24 RIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT 83 (97)
T ss_dssp HHHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred HHHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHh
Confidence 488999986 77 569999999988888888899999999999999999999999999986
No 53
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=96.85 E-value=0.0019 Score=51.91 Aligned_cols=60 Identities=22% Similarity=0.181 Sum_probs=53.0
Q ss_pred HHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHH
Q psy13072 41 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 100 (257)
Q Consensus 41 yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvr 100 (257)
=|.|++|.......||..|.-+|.-..--+...|+.+|...+..++|+||+.+||+.||+
T Consensus 46 RIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~ 105 (119)
T 4g92_C 46 RIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALS 105 (119)
T ss_dssp HHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred HHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHh
Confidence 489999976444678999998888888888899999999999999999999999999996
No 54
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=96.76 E-value=0.0028 Score=51.77 Aligned_cols=73 Identities=19% Similarity=0.150 Sum_probs=61.9
Q ss_pred cchhH-HHHHHHhhhhCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhHHH
Q psy13072 35 KESYA-IYIYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAK 109 (257)
Q Consensus 35 ~esy~-~yI~KVLKqVhpd-~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeLaK 109 (257)
.-.|- ..|+|+|+..... ..|+..|...|-..+..+...|.+.|...++.+++.+|++|+||-|++ -..||-.
T Consensus 25 gLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~--nDeEL~~ 99 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR--GDEELDS 99 (128)
T ss_dssp TCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH--HSHHHHH
T ss_pred CccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh--ccHHHhh
Confidence 34555 4899999998643 479999999999999999999999999999999999999999999999 4555533
No 55
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=96.76 E-value=0.0044 Score=46.53 Aligned_cols=59 Identities=17% Similarity=0.406 Sum_probs=55.3
Q ss_pred HHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHH
Q psy13072 42 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 100 (257)
Q Consensus 42 I~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvr 100 (257)
+..+++||-|...+...+-+.|--+..|+.+.++..|++||.+.+..||..+|||....
T Consensus 11 L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le 69 (76)
T 1h3o_B 11 LQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE 69 (76)
T ss_dssp HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999997664
No 56
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=96.76 E-value=0.0042 Score=51.38 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=56.9
Q ss_pred hhHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072 168 SYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 232 (257)
Q Consensus 168 sy~~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl 232 (257)
.|..-+..+.....+|..+++.|+..|.-...+.+..+.+++..++.+.+|.||.++|||.|.|+
T Consensus 67 PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 131 (136)
T 1tzy_C 67 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
T ss_dssp HHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHH
Confidence 45555555555556799999999999999999999999999999999999999999999999986
No 57
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=96.75 E-value=0.0033 Score=49.50 Aligned_cols=66 Identities=21% Similarity=0.212 Sum_probs=55.0
Q ss_pred chhHHHHHHHhhhcCC---CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072 167 ESYAIYIYKVLKQVHP---DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 232 (257)
Q Consensus 167 esy~~YI~kVLKQVhp---d~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl 232 (257)
-.|..-+..+..+..+ |..+++.|+.-|.-...+..-.+.++|..+|.+.+|.||.++|||.|.|+
T Consensus 31 ~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 99 (100)
T 2yfv_A 31 MPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRI 99 (100)
T ss_dssp HHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHh
Confidence 3455555555555555 78999999999999999999999999999999999999999999999885
No 58
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=96.65 E-value=0.0057 Score=45.22 Aligned_cols=60 Identities=15% Similarity=0.279 Sum_probs=52.5
Q ss_pred HHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072 41 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 101 (257)
Q Consensus 41 yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl 101 (257)
.|.++.+++-= ..+|..+-..|-.-+.+....|+.||.+++++.+|+|||..||-.|+++
T Consensus 11 ~v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 11 SMKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp HHHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred HHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence 46777777643 4789999999999999999999999999999999999999999999864
No 59
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=96.60 E-value=0.0042 Score=51.62 Aligned_cols=66 Identities=12% Similarity=0.171 Sum_probs=53.8
Q ss_pred hhHHHHHHHhhhcC--CCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072 168 SYAIYIYKVLKQVH--PDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 233 (257)
Q Consensus 168 sy~~YI~kVLKQVh--pd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll 233 (257)
-|..-|..+..+.. .|..+++.|+..|--...+.+-.|.++|.-+|.+.+|.||.++|||.|.|+-
T Consensus 66 PF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrir 133 (140)
T 3nqu_A 66 PFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 133 (140)
T ss_dssp HHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhc
Confidence 34444444443333 4788999999999999999999999999999999999999999999999973
No 60
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.0052 Score=47.47 Aligned_cols=60 Identities=12% Similarity=0.177 Sum_probs=52.5
Q ss_pred HHHHhhhcCC--CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072 173 IYKVLKQVHP--DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 232 (257)
Q Consensus 173 I~kVLKQVhp--d~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl 232 (257)
+-++..++-+ +..+|..++.-|.-++.+.++.|+.++..+|...+|+||+..||..++|-
T Consensus 18 V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 18 VEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 4455566644 36699999999999999999999999999999999999999999998873
No 61
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=96.56 E-value=0.0039 Score=52.70 Aligned_cols=52 Identities=15% Similarity=0.191 Sum_probs=48.0
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072 182 PDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 233 (257)
Q Consensus 182 pd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll 233 (257)
.|..+++.|+..|--...+.+-.|.++|.-+|...+|.||.++|||.|.||-
T Consensus 98 ~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIr 149 (156)
T 3r45_A 98 VDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 149 (156)
T ss_dssp CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHH
T ss_pred ccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHc
Confidence 3678999999999999999999999999999999999999999999999973
No 62
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=96.53 E-value=0.009 Score=44.92 Aligned_cols=65 Identities=18% Similarity=0.251 Sum_probs=55.8
Q ss_pred hhHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072 37 SYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 101 (257)
Q Consensus 37 sy~~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl 101 (257)
.|+.-+..+..+..+|..+++.|+..|.-..-++...+.+++..++.+.+|.||.++|||-|.|+
T Consensus 8 PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~ri 72 (77)
T 2hue_B 8 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRI 72 (77)
T ss_dssp HHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHH
Confidence 45555666666667789999999998888888888888899999999999999999999999986
No 63
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=96.46 E-value=0.014 Score=42.83 Aligned_cols=63 Identities=16% Similarity=0.252 Sum_probs=55.3
Q ss_pred HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhC
Q psy13072 40 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLL 103 (257)
Q Consensus 40 ~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllL 103 (257)
.-|.++||...- ...|..+...|--|+......|+.+|..++.+.+++||+..||.-|+...+
T Consensus 5 ~~i~~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~~ 67 (68)
T 1taf_A 5 QVIMSILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVTL 67 (68)
T ss_dssp HHHHHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcc
Confidence 457888888533 467999999999999999999999999999999999999999999998654
No 64
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=96.44 E-value=0.0031 Score=50.14 Aligned_cols=61 Identities=21% Similarity=0.185 Sum_probs=54.2
Q ss_pred HHHHHhhhcCC--CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072 172 YIYKVLKQVHP--DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 232 (257)
Q Consensus 172 YI~kVLKQVhp--d~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl 232 (257)
.|-|+++.+-. +..+|..++..|.-|+.+.++.|+.+|..++.+.+|+||+..||..|+|-
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 35566766633 57899999999999999999999999999999999999999999999884
No 65
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=96.41 E-value=0.0044 Score=49.85 Aligned_cols=60 Identities=17% Similarity=0.235 Sum_probs=54.0
Q ss_pred HHHHhhhcCC--CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072 173 IYKVLKQVHP--DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 232 (257)
Q Consensus 173 I~kVLKQVhp--d~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl 232 (257)
|-|+++++-. +..+|..++.-|.-++.+.++.|+.++..+|...+|+||+..||..++|-
T Consensus 33 V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr 94 (113)
T 4dra_A 33 VGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR 94 (113)
T ss_dssp HHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence 5677776643 57799999999999999999999999999999999999999999999873
No 66
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=96.41 E-value=0.0031 Score=48.98 Aligned_cols=60 Identities=12% Similarity=0.263 Sum_probs=50.4
Q ss_pred HHHHHHhhhhCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHH
Q psy13072 40 IYIYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 100 (257)
Q Consensus 40 ~yI~KVLKqVhpd-~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvr 100 (257)
.=|.|++|. .|| ..||..|.-.|.-..-.+.+.|+.+|...++.++++||+.+||+.||+
T Consensus 15 aRIkrimK~-~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~ 75 (98)
T 1jfi_A 15 ARIKKIMQT-DEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIE 75 (98)
T ss_dssp HHHHHHHTT-STTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred HHHHHHHHc-CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHh
Confidence 358999997 566 678999999888888888899999999999999999999999999886
No 67
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=96.14 E-value=0.01 Score=49.07 Aligned_cols=58 Identities=10% Similarity=0.173 Sum_probs=49.6
Q ss_pred HHHHhhhcCCCC-CcchHHHHHHHHHHHHHHHHHHHHHhhhh-hhcCCcccChhHHHHHHH
Q psy13072 173 IYKVLKQVHPDT-GVSSKAMSIMNSFVNDIFERIAAESSRLA-HYNKRSTITSREIQTAVR 231 (257)
Q Consensus 173 I~kVLKQVhpd~-~ISskAM~imnSfvnDiferIa~EAs~La-~~~kr~Tit~reIqtAvr 231 (257)
|.|++|.- |+. .||..|.-+|.-...-+...|+.+|...+ ..++|.||+.++|..||.
T Consensus 25 IKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~ 84 (140)
T 2byk_A 25 VRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN 84 (140)
T ss_dssp ----CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred HHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence 88889875 774 58999999999999999999999999999 999999999999999997
No 68
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=96.14 E-value=0.016 Score=44.08 Aligned_cols=66 Identities=12% Similarity=0.171 Sum_probs=54.0
Q ss_pred hhHHHHHHHhhhhC--CCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHh
Q psy13072 37 SYAIYIYKVLKQVH--PDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 102 (257)
Q Consensus 37 sy~~yI~KVLKqVh--pd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrll 102 (257)
.|+.-|..+-.+.. .|..+++.|+..|---.-++.-.+.++|.-++.+.+|.||.++|||-|.|+-
T Consensus 8 PF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rir 75 (82)
T 3nqj_A 8 PFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 75 (82)
T ss_dssp HHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHc
Confidence 35554555554444 4788999999999888888888888899999999999999999999999974
No 69
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=96.14 E-value=0.0069 Score=50.35 Aligned_cols=60 Identities=22% Similarity=0.205 Sum_probs=52.6
Q ss_pred HHHHhhhcC--CCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072 173 IYKVLKQVH--PDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 232 (257)
Q Consensus 173 I~kVLKQVh--pd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl 232 (257)
|-++.+++- .++.+|..++.-|.-++.+.++.|+.++..+|++.+|.||+..||..++|-
T Consensus 25 VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 25 TGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 445555552 357899999999999999999999999999999999999999999999884
No 70
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=96.07 E-value=0.016 Score=60.77 Aligned_cols=74 Identities=16% Similarity=0.309 Sum_probs=65.1
Q ss_pred chhHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcchHHHhhHHhhh
Q psy13072 167 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEG 246 (257)
Q Consensus 167 esy~~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrllLpgeLakhAv~eG 246 (257)
.-|-.-|+|||.||||++.|.-.|+..+++++-.++-.|+. ...-|..|+...|.-.+|++|.++|+.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (1049)
T 3ksy_A 21 GLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQ----------AQPRSASDVEERVQKSFPHPIDKWAIADA 90 (1049)
T ss_dssp SSSHHHHHHHHHHHCTTSBCCHHHHHHHHHHHHHHHHHHHH----------TCCCSHHHHHHHHHHHSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCccHhHHHHHHHHHHHHHHHHhc----------CCCccHHHHHHHHHHhCCCchHHHHHHHH
Confidence 34777899999999999999999999999999888877764 45678899999999999999999999998
Q ss_pred hhhh
Q psy13072 247 TKAV 250 (257)
Q Consensus 247 ~kAV 250 (257)
-.++
T Consensus 91 ~~~~ 94 (1049)
T 3ksy_A 91 QSAI 94 (1049)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 6664
No 71
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.013 Score=45.26 Aligned_cols=59 Identities=12% Similarity=0.192 Sum_probs=51.5
Q ss_pred HHHHhhhhCC--CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHH
Q psy13072 42 IYKVLKQVHP--DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 100 (257)
Q Consensus 42 I~KVLKqVhp--d~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvr 100 (257)
+-++..++-+ +..+|..++..|--++.+.++.|+.++..++++.+|+||+..||..++|
T Consensus 18 V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~R 78 (90)
T 3v9r_A 18 VEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLR 78 (90)
T ss_dssp HHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 3455556644 3668999999999999999999999999999999999999999988876
No 72
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=95.91 E-value=0.023 Score=46.91 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=54.7
Q ss_pred hHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072 38 YAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 101 (257)
Q Consensus 38 y~~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl 101 (257)
|+..|..+..+..+|.-+++.|+..|--...++...+.+++..++.+.++.||..+|||-|.++
T Consensus 68 F~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 131 (136)
T 1tzy_C 68 FQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
T ss_dssp HHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHH
Confidence 4555555555556899999999998888888888888889999999999999999999999986
No 73
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=95.89 E-value=0.0079 Score=47.82 Aligned_cols=60 Identities=22% Similarity=0.199 Sum_probs=53.0
Q ss_pred HHHHhhhhCC--CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072 42 IYKVLKQVHP--DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 101 (257)
Q Consensus 42 I~KVLKqVhp--d~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl 101 (257)
|-|+++.+-- +..+|..++..|.-|+.++++.|+.++..++.+.+|+||+..||..|+|-
T Consensus 25 V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 25 TGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 5566666633 56899999999999999999999999999999999999999999988874
No 74
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=95.84 E-value=0.011 Score=47.63 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=52.9
Q ss_pred HHHHhhhhCC--CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHH
Q psy13072 42 IYKVLKQVHP--DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 100 (257)
Q Consensus 42 I~KVLKqVhp--d~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvr 100 (257)
|-|+++++-. +..+|..++..|.-++.+.++.|+.++..++...+|+||+..||..++|
T Consensus 33 V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~R 93 (113)
T 4dra_A 33 VGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLAR 93 (113)
T ss_dssp HHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 5577776643 5679999999999999999999999999999999999999999988887
No 75
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.017 Score=46.92 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=43.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072 185 GVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 232 (257)
Q Consensus 185 ~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl 232 (257)
.||..+..-+...++++++.|+.+|..++.+.+|+|+|..||-.|++.
T Consensus 64 RIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr 111 (121)
T 2ly8_A 64 RISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 111 (121)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 467777888888999999999999999999999999999999999874
No 76
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=95.72 E-value=0.026 Score=44.33 Aligned_cols=66 Identities=21% Similarity=0.212 Sum_probs=53.3
Q ss_pred chhHHHHHHHhhhhCC---CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072 36 ESYAIYIYKVLKQVHP---DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 101 (257)
Q Consensus 36 esy~~yI~KVLKqVhp---d~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl 101 (257)
-.|+.-+..+..+..+ |..+++.|+..|--..-++.-.+.++|.-++.+.+|.||..+|||-|.|+
T Consensus 31 ~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 99 (100)
T 2yfv_A 31 MPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRI 99 (100)
T ss_dssp HHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHh
Confidence 3456656666655555 78999999998888888888888888999999999999999999999875
No 77
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=95.52 E-value=0.016 Score=48.16 Aligned_cols=59 Identities=22% Similarity=0.211 Sum_probs=51.6
Q ss_pred HHHhhhhC--CCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072 43 YKVLKQVH--PDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 101 (257)
Q Consensus 43 ~KVLKqVh--pd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl 101 (257)
-++.+++- .++.+|..++..|.-++.++++.|+.++..++++.+|+||+..||..++|-
T Consensus 26 gkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 26 GALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp HHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 34555442 357899999999999999999999999999999999999999999998883
No 78
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=95.37 E-value=0.024 Score=45.99 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=45.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072 53 TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 101 (257)
Q Consensus 53 ~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl 101 (257)
-.||..+..-+...+.++++.|+.+|..++.+.+|+|+|..||.-|++.
T Consensus 63 kRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr 111 (121)
T 2ly8_A 63 KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 111 (121)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 3689999999999999999999999999999999999999999999874
No 79
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=95.33 E-value=0.034 Score=46.21 Aligned_cols=52 Identities=15% Similarity=0.191 Sum_probs=46.1
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHh
Q psy13072 51 PDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 102 (257)
Q Consensus 51 pd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrll 102 (257)
.|.-+++.|+..|--..-++.-.+.++|.-++.+.++.||..+|||-|.++-
T Consensus 82 ~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrir 133 (140)
T 3nqu_A 82 VDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 133 (140)
T ss_dssp CCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhc
Confidence 3678999999988888888888888899999999999999999999999974
No 80
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=95.24 E-value=0.031 Score=46.14 Aligned_cols=59 Identities=8% Similarity=0.139 Sum_probs=47.2
Q ss_pred HHHHHhhhhCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhh-hhcCCCCCChhHHHHHHH
Q psy13072 41 YIYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLA-HYNKRSTITSREIQTAVR 100 (257)
Q Consensus 41 yI~KVLKqVhpd-~~ISskam~imnSfv~DiferIa~EAs~L~-~~~kk~TltsreIqtAvr 100 (257)
=|.|++|.- || ..||..|.-+|.-..--+...|+.+|...+ ..++++||+.++|..||.
T Consensus 24 RIKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~ 84 (140)
T 2byk_A 24 RVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN 84 (140)
T ss_dssp -----CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred HHHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence 588899886 77 467888888877777777788999999999 999999999999999997
No 81
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=95.02 E-value=0.062 Score=45.34 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=45.3
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHh
Q psy13072 52 DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 102 (257)
Q Consensus 52 d~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrll 102 (257)
|+-+++.|+..|--..-+++..|.++|.-++.+.++.||..+|||-|.||-
T Consensus 99 ~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIr 149 (156)
T 3r45_A 99 DFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 149 (156)
T ss_dssp CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHH
T ss_pred cceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHc
Confidence 678899999988888888888888889999999999999999999999973
No 82
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=93.79 E-value=0.11 Score=46.48 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=47.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHh
Q psy13072 53 TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 102 (257)
Q Consensus 53 ~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrll 102 (257)
-.||..+..-+...+.++.+.|+.+|..++.+.+|+|+|+.||.-|++..
T Consensus 177 kRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 177 KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence 46899999999999999999999999999999999999999999998854
No 83
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=86.35 E-value=2.8 Score=31.88 Aligned_cols=61 Identities=16% Similarity=0.272 Sum_probs=50.8
Q ss_pred HHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhc-CCcccChhHHHHHHHHhc
Q psy13072 173 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYN-KRSTITSREIQTAVRLLL 234 (257)
Q Consensus 173 I~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~-kr~Tit~reIqtAvrllL 234 (257)
|.|+..++. +.++|.....+|..+-.-+.-.|.++|..+.... ....|.+++|..|+|.+-
T Consensus 22 vKrl~~~~~-~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 22 IKRLIQSIT-GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp HHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 566677775 7889998888998888888899999999888765 455999999999999764
No 84
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=74.88 E-value=12 Score=28.34 Aligned_cols=62 Identities=16% Similarity=0.256 Sum_probs=50.0
Q ss_pred HHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhc-CCCCCChhHHHHHHHHhC
Q psy13072 41 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYN-KRSTITSREIQTAVRLLL 103 (257)
Q Consensus 41 yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~-kk~TltsreIqtAvrllL 103 (257)
-|.|+..++. +.++|.....+|..+-.-+.-.|.++|..+.... ....|.++.|..|+|.+-
T Consensus 21 ~vKrl~~~~~-~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 21 AIKRLIQSIT-GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp HHHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 4667777774 7788888888888888888888888998887654 456999999999999764
No 85
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=70.87 E-value=18 Score=27.29 Aligned_cols=61 Identities=15% Similarity=0.210 Sum_probs=40.0
Q ss_pred HHHHHhhhcC--CCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072 172 YIYKVLKQVH--PDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 232 (257)
Q Consensus 172 YI~kVLKQVh--pd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl 232 (257)
-|.|+|++-+ +++.||..|+..+.-+++=+.......|...+.-....+|...+++.-.-.
T Consensus 17 li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQ 79 (84)
T 4dra_E 17 LVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQ 79 (84)
T ss_dssp HHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 4889999775 569999999986655444433333333333444456778999998874443
No 86
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=69.60 E-value=17 Score=27.15 Aligned_cols=57 Identities=14% Similarity=0.257 Sum_probs=40.2
Q ss_pred HHHHHhhhcCC--CCCcchHHHHH----HHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072 172 YIYKVLKQVHP--DTGVSSKAMSI----MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 232 (257)
Q Consensus 172 YI~kVLKQVhp--d~~ISskAM~i----mnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl 232 (257)
-|.++|++.+. .+.|++.|+.. |+-||+.-+.|-+.+| .-.....|...+++.-.-.
T Consensus 13 lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a----~~e~~~~le~~~LEki~pq 75 (81)
T 3b0b_C 13 TVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQA----QAEDLEKVDIEHVEKVLPQ 75 (81)
T ss_dssp HHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHH----HHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCCCeecHHHHHHHHHH
Confidence 48889998876 58999999875 4555556666655554 3456678999998874433
No 87
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=66.21 E-value=25 Score=26.53 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=40.8
Q ss_pred HHHHHHhhhhC--CCCCcchHHHH----HHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHH
Q psy13072 40 IYIYKVLKQVH--PDTGVSSKAMS----IMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 100 (257)
Q Consensus 40 ~yI~KVLKqVh--pd~~ISskam~----imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvr 100 (257)
--|.|+|++-. +++.||..|+. .|+-||+.-+.|-+.+|. -....+|...+++.-.-
T Consensus 16 ~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~----~e~~~~le~e~LEki~p 78 (84)
T 4dra_E 16 ELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQ----AEDALRVDVDQLEKVLP 78 (84)
T ss_dssp HHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCcccHHHHHHHHH
Confidence 46889999776 56999999996 455666666666666554 34667899888876443
No 88
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=64.99 E-value=22 Score=26.54 Aligned_cols=56 Identities=14% Similarity=0.255 Sum_probs=41.9
Q ss_pred HHHHHHhhhhCC--CCCcchHHHH----HHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHH
Q psy13072 40 IYIYKVLKQVHP--DTGVSSKAMS----IMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAV 99 (257)
Q Consensus 40 ~yI~KVLKqVhp--d~~ISskam~----imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAv 99 (257)
.-|.++|++.+. .+.|++.|+. .|+-||+.-+.|-+.+|. -.....|...+++.-.
T Consensus 12 ~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~----~e~~~~le~~~LEki~ 73 (81)
T 3b0b_C 12 ETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQ----AEDLEKVDIEHVEKVL 73 (81)
T ss_dssp HHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTCSEECHHHHHHHH
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCCeecHHHHHHHH
Confidence 358899999877 5899999996 667777777777777653 3566778888887643
No 89
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=54.63 E-value=18 Score=25.63 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=30.3
Q ss_pred HHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcch
Q psy13072 202 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 236 (257)
Q Consensus 202 ferIa~EAs~La~~~kr~Tit~reIqtAvrllLpg 236 (257)
++.++.||+..+-......|+..|+..|+.-+-|+
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps 74 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTVIKK 74 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccC
Confidence 35688899998888888999999999999999996
No 90
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=52.29 E-value=16 Score=26.56 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=29.7
Q ss_pred HHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcchHHH
Q psy13072 202 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELA 239 (257)
Q Consensus 202 ferIa~EAs~La~~~kr~Tit~reIqtAvrllLpgeLa 239 (257)
+..++.||+-.+-......|+..|+..|+.-+.||-.-
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~ 77 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKK 77 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCccc
Confidence 45678888888877788899999999999999998543
No 91
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=47.96 E-value=35 Score=29.33 Aligned_cols=58 Identities=10% Similarity=0.101 Sum_probs=45.4
Q ss_pred CCCCCcchHHHHHHHHHHHH-------HHHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcchHH
Q psy13072 181 HPDTGVSSKAMSIMNSFVND-------IFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL 238 (257)
Q Consensus 181 hpd~~ISskAM~imnSfvnD-------iferIa~EAs~La~~~kr~Tit~reIqtAvrllLpgeL 238 (257)
.++..||..++..+..+... -...+...|..+|...++.+|+..+|..|+.++|+.-+
T Consensus 263 ~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r~ 327 (350)
T 1g8p_A 263 LPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRL 327 (350)
T ss_dssp GGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhcc
Confidence 34568999999988877654 34567777777887888899999999999999886544
No 92
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=47.94 E-value=18 Score=25.78 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=28.9
Q ss_pred HHHHHHHhhhhhhcCCcccChhHHHHHHHHhcchH
Q psy13072 203 ERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE 237 (257)
Q Consensus 203 erIa~EAs~La~~~kr~Tit~reIqtAvrllLpge 237 (257)
+.++.||+..+-...+..|+..|+..|+.-+++|.
T Consensus 38 ~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~ 72 (82)
T 2dzn_B 38 AAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTD 72 (82)
T ss_dssp HHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCc
Confidence 46788888888888888999999999999987653
No 93
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=46.86 E-value=18 Score=26.47 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcch
Q psy13072 202 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 236 (257)
Q Consensus 202 ferIa~EAs~La~~~kr~Tit~reIqtAvrllLpg 236 (257)
++.|+.||+-.+-......|+..|+..|+.-+.|+
T Consensus 50 L~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 50 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 35688888888887778999999999999999886
No 94
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=46.34 E-value=19 Score=35.17 Aligned_cols=63 Identities=21% Similarity=0.362 Sum_probs=46.2
Q ss_pred HHHHHHHhhhcCCCCCcchHHHHHHHHHHHHH------------------HHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072 170 AIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDI------------------FERIAAESSRLAHYNKRSTITSREIQTAVR 231 (257)
Q Consensus 170 ~~YI~kVLKQVhpd~~ISskAM~imnSfvnDi------------------ferIa~EAs~La~~~kr~Tit~reIqtAvr 231 (257)
..|+...-..++| .+|..|...|..+..++ ++.|...|.-+|....+.+++..|+..|++
T Consensus 508 ~~~i~~ar~~~~p--~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~ 585 (595)
T 3f9v_A 508 RKYIAYARKYVTP--KITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAIN 585 (595)
T ss_dssp HHHHHHHHHHHCC--CCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHH
T ss_pred HHHHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHH
Confidence 3444333334566 57777888777776542 577888888888889999999999999999
Q ss_pred Hhc
Q psy13072 232 LLL 234 (257)
Q Consensus 232 llL 234 (257)
|+-
T Consensus 586 l~~ 588 (595)
T 3f9v_A 586 IMR 588 (595)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 95
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=46.26 E-value=30 Score=24.43 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCCh
Q psy13072 65 SFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 105 (257)
Q Consensus 65 Sfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpG 105 (257)
.|..-=.+.++.||+..+-......|+..|+..|++-+.|+
T Consensus 34 G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps 74 (83)
T 3aji_B 34 KISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKK 74 (83)
T ss_dssp CCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccC
Confidence 34444556788999999888888999999999999999996
No 96
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=44.24 E-value=25 Score=25.51 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChh
Q psy13072 66 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE 106 (257)
Q Consensus 66 fv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGe 106 (257)
|..-=...++.||+-.+-......|+..|+..|+.-+.||-
T Consensus 35 ~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~ 75 (88)
T 3vlf_B 35 STGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGY 75 (88)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC--
T ss_pred CcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCc
Confidence 44444567888888888777888999999999999999984
No 97
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=42.86 E-value=25 Score=24.61 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=29.2
Q ss_pred HHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcch
Q psy13072 202 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 236 (257)
Q Consensus 202 ferIa~EAs~La~~~kr~Tit~reIqtAvrllLpg 236 (257)
++.++.||+..+....+..|+..|+..|+.-++.+
T Consensus 42 i~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 42 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 35688899988888889999999999999877654
No 98
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=40.22 E-value=68 Score=23.09 Aligned_cols=49 Identities=16% Similarity=0.159 Sum_probs=37.7
Q ss_pred HHHHHHhhhcCCCCCcchHHHHHHHHHHHHH---------HHHHHHHHhhhhhhcCCcc
Q psy13072 171 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDI---------FERIAAESSRLAHYNKRST 220 (257)
Q Consensus 171 ~YI~kVLKQVhpd~~ISskAM~imnSfvnDi---------ferIa~EAs~La~~~kr~T 220 (257)
..++.+..|-..+ .+|+.-+..|+.+++|. =..+..+|.+.|-.+++..
T Consensus 2 ~~~~~~~e~~g~g-~ls~~e~e~i~~w~~~~~~~~~~~~~~~elI~~A~~~av~~~~~~ 59 (83)
T 2i5u_A 2 NAIRSIWENNGFG-LMSSKTMTDFDYWISDFEKIGASQKEAEQLIVKAIEIAIDANARN 59 (83)
T ss_dssp HHHHHHHHTTTSC-SCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTCCS
T ss_pred chHHHHHHHhCCC-CCCHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHcCCCC
Confidence 3566777776346 88999999999999887 5778889998887766543
No 99
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=40.01 E-value=27 Score=34.05 Aligned_cols=65 Identities=20% Similarity=0.358 Sum_probs=46.6
Q ss_pred hhHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHH------------------HHHHHHHHhhhhhhcCCCCCChhHHHHH
Q psy13072 37 SYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDI------------------FERIAAESSRLAHYNKRSTITSREIQTA 98 (257)
Q Consensus 37 sy~~yI~KVLKqVhpd~~ISskam~imnSfv~Di------------------ferIa~EAs~L~~~~kk~TltsreIqtA 98 (257)
....||.-+-..++| .+|.+|...|..+..++ ++.+..-|..+|....+.+++..|+..|
T Consensus 506 ~l~~~i~~ar~~~~p--~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~A 583 (595)
T 3f9v_A 506 TLRKYIAYARKYVTP--KITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERA 583 (595)
T ss_dssp TTHHHHHHHHHHHCC--CCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHH
Confidence 344555555556677 56677777666664432 5677777778888889999999999999
Q ss_pred HHHhC
Q psy13072 99 VRLLL 103 (257)
Q Consensus 99 vrllL 103 (257)
++|+-
T Consensus 584 i~l~~ 588 (595)
T 3f9v_A 584 INIMR 588 (595)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99864
No 100
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=38.69 E-value=1.6e+02 Score=25.35 Aligned_cols=76 Identities=12% Similarity=0.118 Sum_probs=52.5
Q ss_pred hHHHHHHHhhhcCCCCCcchHHHHHHHHHHH----HHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcchHHHhhHHh
Q psy13072 169 YAIYIYKVLKQVHPDTGVSSKAMSIMNSFVN----DIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVS 244 (257)
Q Consensus 169 y~~YI~kVLKQVhpd~~ISskAM~imnSfvn----DiferIa~EAs~La~~~kr~Tit~reIqtAvrllLpgeLakhAv~ 244 (257)
...++.+.+.+ .+..++..++..+-.+.. .-...+...|..+|..+++.+||..+|..|+.+++...-....+.
T Consensus 264 ~~~il~~~~~~--~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~~~~~~~~~~~ 341 (368)
T 3uk6_A 264 TKQILRIRCEE--EDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMK 341 (368)
T ss_dssp HHHHHHHHHHH--TTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSBCHHHHHHHHC
T ss_pred HHHHHHHHHHH--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCHHHHHHHHH
Confidence 34455555554 245688888887776664 123456777777887889999999999999999887665544444
Q ss_pred hh
Q psy13072 245 EG 246 (257)
Q Consensus 245 eG 246 (257)
+.
T Consensus 342 ~~ 343 (368)
T 3uk6_A 342 EY 343 (368)
T ss_dssp --
T ss_pred Hh
Confidence 43
No 101
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=38.64 E-value=28 Score=24.72 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChh
Q psy13072 66 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE 106 (257)
Q Consensus 66 fv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGe 106 (257)
|..-=.+.++.||+-.+-...+..|+..|+..|+.-+++|.
T Consensus 32 ~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~ 72 (82)
T 2dzn_B 32 LSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTD 72 (82)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC--
T ss_pred CCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCc
Confidence 33333456888888888888888999999999999987663
No 102
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=37.82 E-value=27 Score=25.42 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCCh
Q psy13072 65 SFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 105 (257)
Q Consensus 65 Sfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpG 105 (257)
.|..-=++.++.||+-.+-......|+..|+..|+.-+.|+
T Consensus 44 G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 44 GASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 44444456788899888877778999999999999999886
No 103
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=36.62 E-value=61 Score=27.77 Aligned_cols=57 Identities=9% Similarity=0.079 Sum_probs=43.2
Q ss_pred CCCCCcchHHHHHHHHHHHH-------HHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChh
Q psy13072 50 HPDTGVSSKAMSIMNSFVND-------IFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE 106 (257)
Q Consensus 50 hpd~~ISskam~imnSfv~D-------iferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGe 106 (257)
.++..+|..++..+..+... -...+...|..++....+.+|+..+|..|+.++|..-
T Consensus 263 ~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r 326 (350)
T 1g8p_A 263 LPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHR 326 (350)
T ss_dssp GGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhc
Confidence 34568899988877666543 2346666677777778888999999999999998753
No 104
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=33.18 E-value=38 Score=23.61 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCCh
Q psy13072 66 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 105 (257)
Q Consensus 66 fv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpG 105 (257)
|..-=.+.++.||+..+-......|+..|+..|+.-++.+
T Consensus 37 ~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 37 ASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 4444456788899988888888999999999999877654
No 105
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=32.03 E-value=2.1e+02 Score=24.30 Aligned_cols=68 Identities=9% Similarity=0.042 Sum_probs=48.6
Q ss_pred hHHHHHHHhhhcCCCCCcchHHHHHHHHHHH----HH--HHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcch
Q psy13072 169 YAIYIYKVLKQVHPDTGVSSKAMSIMNSFVN----DI--FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 236 (257)
Q Consensus 169 y~~YI~kVLKQVhpd~~ISskAM~imnSfvn----Di--ferIa~EAs~La~~~kr~Tit~reIqtAvrllLpg 236 (257)
...++...+.+..++..++..++..+..+.. |+ ...+...|..++......+|+..+|+.|+..+.+.
T Consensus 202 ~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~ 275 (386)
T 2qby_A 202 LEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERD 275 (386)
T ss_dssp HHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhc
Confidence 4445555566566667888888887777664 12 23477788888887788899999999988766543
No 106
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=29.00 E-value=2.8e+02 Score=23.85 Aligned_cols=69 Identities=12% Similarity=0.131 Sum_probs=47.6
Q ss_pred HHHHHHHhhhhCCCCCcchHHHHHHHHHHH----HHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhHHH
Q psy13072 39 AIYIYKVLKQVHPDTGVSSKAMSIMNSFVN----DIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAK 109 (257)
Q Consensus 39 ~~yI~KVLKqVhpd~~ISskam~imnSfv~----DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeLaK 109 (257)
..++.+.+.+. +..++..++..+-.+.. .-...+...|..++..++..+||..+|..|+.+++...-..
T Consensus 265 ~~il~~~~~~~--~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~~~~~~~ 337 (368)
T 3uk6_A 265 KQILRIRCEEE--DVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRST 337 (368)
T ss_dssp HHHHHHHHHHT--TCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSBCHHHHH
T ss_pred HHHHHHHHHHc--CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCHHHHH
Confidence 34455455442 35688888876665553 12345667777777788999999999999999988765443
No 107
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=28.90 E-value=99 Score=26.59 Aligned_cols=56 Identities=13% Similarity=0.176 Sum_probs=40.7
Q ss_pred CCCcchHHHHHHHHHHHHH-----------------------HHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcchHH
Q psy13072 183 DTGVSSKAMSIMNSFVNDI-----------------------FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL 238 (257)
Q Consensus 183 d~~ISskAM~imnSfvnDi-----------------------ferIa~EAs~La~~~kr~Tit~reIqtAvrllLpgeL 238 (257)
+..++...+..+..++..+ ...+...|..+|....+..++..||+.|+..+|...+
T Consensus 224 ~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r~ 302 (331)
T 2r44_A 224 KVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHRI 302 (331)
T ss_dssp TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTTS
T ss_pred cCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhhc
Confidence 4557777777766665432 2345666677788889999999999999999986543
No 108
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=26.02 E-value=2.3e+02 Score=27.16 Aligned_cols=64 Identities=11% Similarity=0.104 Sum_probs=46.0
Q ss_pred hHHHHHHHhhhcC---CCCCcchHHHHHHHHHHH-------------HHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072 169 YAIYIYKVLKQVH---PDTGVSSKAMSIMNSFVN-------------DIFERIAAESSRLAHYNKRSTITSREIQTAVRL 232 (257)
Q Consensus 169 y~~YI~kVLKQVh---pd~~ISskAM~imnSfvn-------------DiferIa~EAs~La~~~kr~Tit~reIqtAvrl 232 (257)
...|+..+.++.. ....++..|+..|-.+-. --.+.|..+|..+|....+..|+..+|+.|+..
T Consensus 295 ~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 295 RRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 4455544444433 446899999987776442 224567778888998889999999999999965
No 109
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=25.75 E-value=2.5e+02 Score=23.82 Aligned_cols=68 Identities=4% Similarity=0.042 Sum_probs=48.8
Q ss_pred hhHHHHHHHhhhcCCCCCcchHHHHHHHHHHH----HH--HHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcc
Q psy13072 168 SYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVN----DI--FERIAAESSRLAHYNKRSTITSREIQTAVRLLLP 235 (257)
Q Consensus 168 sy~~YI~kVLKQVhpd~~ISskAM~imnSfvn----Di--ferIa~EAs~La~~~kr~Tit~reIqtAvrllLp 235 (257)
....++...+.+...+..++..++..+..+.. |+ ...+...|..++...+..+|+..+|..|+..+..
T Consensus 205 ~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 278 (387)
T 2v1u_A 205 QLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIER 278 (387)
T ss_dssp HHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh
Confidence 34456666666555567788888888877775 33 3467777777777778889999999999876643
No 110
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=25.13 E-value=71 Score=26.41 Aligned_cols=34 Identities=15% Similarity=0.273 Sum_probs=28.5
Q ss_pred HHHHHHHhhhhhhcCCcccChhHHHHHHHHhcch
Q psy13072 203 ERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 236 (257)
Q Consensus 203 erIa~EAs~La~~~kr~Tit~reIqtAvrllLpg 236 (257)
+.+..+|..+|...++.+|+..++..|+..++.|
T Consensus 222 ~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 255 (257)
T 1lv7_A 222 ANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMG 255 (257)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCcccHHHHHHHHHHHhcC
Confidence 4677788888888888999999999999988754
No 111
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=24.46 E-value=94 Score=25.76 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=37.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHH
Q psy13072 183 DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 226 (257)
Q Consensus 183 d~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reI 226 (257)
++.+...-..=|+.||+.-+.-+..-|..-|.+|+|-.|-.+|+
T Consensus 17 ~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 17 GLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 56666666677888999999999999999999999999999883
No 112
>1eia_A EIAV capsid protein P26; viral capsid, HIV, lentivirus, viral protein; 2.70A {Equine infectious anemia virus} SCOP: a.28.3.1 a.73.1.1 PDB: 2eia_A
Probab=23.26 E-value=2.9e+02 Score=23.67 Aligned_cols=81 Identities=15% Similarity=0.201 Sum_probs=52.1
Q ss_pred HHHHHHHhhhhhhcCC--CCC----------ChhHH-------HHHHHHhC-C-hhHHHhHHHhhhhhhhh--ccCCCCC
Q psy13072 72 ERIAAESSRLAHYNKR--STI----------TSREI-------QTAVRLLL-P-GELAKHAVSEGTKAVTK--YTSSKSN 128 (257)
Q Consensus 72 erIa~EAs~L~~~~kk--~Tl----------tsreI-------qtAvrllL-p-GeLaKhAv~eG~kAV~k--y~s~~~~ 128 (257)
+.|-+||..+.+.+.- -+| +.+|| |..+.... | |++-+.-+-+|.+.+.+ |....
T Consensus 57 ~~ineeaa~wd~~hP~~~gp~~~~g~~~~p~~~~~i~G~~~t~qeQ~~~~~~~vg~iy~~Wii~~l~k~v~~~~sp~s-- 134 (207)
T 1eia_A 57 DAIDKIADDWDNRHPLPNAPLVAPPQGPIPMTARFIRGLGVPRERQMEPAFDQFRQTYRQWIIEAMSEGIKVMIGKPK-- 134 (207)
T ss_dssp HHHHHHHHHHHHHSCCTTCCSSCCSSSCCCCCHHHHTTSSCCHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHTSCC--
T ss_pred HHHHHHHHHhcccCCCCCCCCCCCCccCCCCccccccCCCccHHHHhcccccchHHHHHHHHHHHHHHHHHHhccccc--
Confidence 4445788888877553 232 56666 55555555 6 89999999999998544 53211
Q ss_pred cchhhhhccCCcchhhhhhcccccccccccccccccCCchhHHHHHHHhhhcCCC
Q psy13072 129 PLQFIMAAGKSSGKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPD 183 (257)
Q Consensus 129 pa~~~~~~~~~~~k~~~k~~~~~~~~~~~~kk~~~~~~esy~~YI~kVLKQVhpd 183 (257)
--. -+...+|.|..|+-|+||.....
T Consensus 135 ---~~~--------------------------IkQGpKEPf~dfVdR~~k~l~~e 160 (207)
T 1eia_A 135 ---AQN--------------------------IRQGAKEPYPEFVDRLLSQIKSE 160 (207)
T ss_dssp ---GGG--------------------------CCCCTTCCHHHHHHHHHHHHHTT
T ss_pred ---ccc--------------------------cccCCCCcHHHHHHHHHHHHHhh
Confidence 000 02223688999999999977544
No 113
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=22.59 E-value=5e+02 Score=24.65 Aligned_cols=124 Identities=16% Similarity=0.203 Sum_probs=72.7
Q ss_pred HHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCCh-----------hHHHhHHHhhhhhhhhccCCCCCcchhhhhccCC
Q psy13072 71 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG-----------ELAKHAVSEGTKAVTKYTSSKSNPLQFIMAAGKS 139 (257)
Q Consensus 71 ferIa~EAs~L~~~~kk~TltsreIqtAvrllLpG-----------eLaKhAv~eG~kAV~ky~s~~~~pa~~~~~~~~~ 139 (257)
++.+..+|..++...++..|+..++..|+.-+++| |...-|+-|.-.||..+--....|......
T Consensus 240 L~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i---- 315 (499)
T 2dhr_A 240 LENLLNEAALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTI---- 315 (499)
T ss_dssp HHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEES----
T ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHHhhcCCCCeeeEEEe----
Confidence 35677788888877778899999999999998876 234567777666776654222212211111
Q ss_pred cchhhhhhcccccccccccccccccCCchhHHHHHHHhhhcCCCCC-cchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC
Q psy13072 140 SGKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTG-VSSKAMSIMNSFVNDIFERIAAESSRLAHYNKR 218 (257)
Q Consensus 140 ~~k~~~k~~~~~~~~~~~~kk~~~~~~esy~~YI~kVLKQVhpd~~-ISskAM~imnSfvnDiferIa~EAs~La~~~kr 218 (257)
.+. . +...|.. . .|. |.- .+.. ++.++|-..++..|+.-.-+..-
T Consensus 316 ----------~pr---------~--~~~g~~~--p---~q~--~~~~~t~~------~l~~~i~~~lgGr~ae~~~~g~~ 361 (499)
T 2dhr_A 316 ----------VPR---------G--RALGFMM--P---RRE--DMLHWSRK------RLLDQIAVALAGRAAEEIVFDDV 361 (499)
T ss_dssp ----------CCS---------S--CTTCSSH--H---HHT--TCCCCCHH------HHHHHHHHHHHHHHHHHHHSCSC
T ss_pred ----------ecC---------C--CcCcccc--c---chh--hhhccCHH------HHHHHHHHHhhhHhHHHhhhccc
Confidence 000 0 0111111 1 111 111 2222 34555555666666666667778
Q ss_pred cccChhHHHHHHHH
Q psy13072 219 STITSREIQTAVRL 232 (257)
Q Consensus 219 ~Tit~reIqtAvrl 232 (257)
+|=.+.||+.|..+
T Consensus 362 ~~ga~~Dl~~at~~ 375 (499)
T 2dhr_A 362 TTGAENDFRQATEL 375 (499)
T ss_dssp CBCCCHHHHHHHHH
T ss_pred CcccHHHHHHHHHH
Confidence 88889999999874
No 114
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=22.31 E-value=1.8e+02 Score=20.71 Aligned_cols=48 Identities=17% Similarity=0.159 Sum_probs=34.1
Q ss_pred HHHHHHhhhhCCCCCcchHHHHHHHHHHHHH---------HHHHHHHHhhhhhhcCCC
Q psy13072 40 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDI---------FERIAAESSRLAHYNKRS 88 (257)
Q Consensus 40 ~yI~KVLKqVhpd~~ISskam~imnSfv~Di---------ferIa~EAs~L~~~~kk~ 88 (257)
..++.+..|-... .+|+.-+..|+.++.|+ =..+..+|.+.+-.+++.
T Consensus 2 ~~~~~~~e~~g~g-~ls~~e~e~i~~w~~~~~~~~~~~~~~~elI~~A~~~av~~~~~ 58 (83)
T 2i5u_A 2 NAIRSIWENNGFG-LMSSKTMTDFDYWISDFEKIGASQKEAEQLIVKAIEIAIDANAR 58 (83)
T ss_dssp HHHHHHHHTTTSC-SCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred chHHHHHHHhCCC-CCCHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHcCCC
Confidence 3566677776335 78888888888888877 467777787777665543
No 115
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=22.03 E-value=1.4e+02 Score=24.80 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcch
Q psy13072 201 IFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 236 (257)
Q Consensus 201 iferIa~EAs~La~~~kr~Tit~reIqtAvrllLpg 236 (257)
-.+.+..+|...|....+.+|+..+++.|+.-+++.
T Consensus 226 ~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEK 261 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhc
Confidence 345588888888888889999999999999988754
No 116
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=21.75 E-value=1.2e+02 Score=29.11 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=38.1
Q ss_pred HHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcch-----------HHHhhHHhhhhhhhhcc
Q psy13072 202 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG-----------ELAKHAVSEGTKAVTKY 253 (257)
Q Consensus 202 ferIa~EAs~La~~~kr~Tit~reIqtAvrllLpg-----------eLakhAv~eG~kAV~ky 253 (257)
++.+..+|..++...++..|+..|+..|+.-++|| |.-.-|+-|.-.||..|
T Consensus 240 L~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~ 302 (499)
T 2dhr_A 240 LENLLNEAALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAH 302 (499)
T ss_dssp HHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHHh
Confidence 35667788878877778899999999999998876 23445666655566543
No 117
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=21.72 E-value=3.6e+02 Score=22.78 Aligned_cols=66 Identities=9% Similarity=0.042 Sum_probs=45.9
Q ss_pred HHHHHHHhhhhCCCCCcchHHHHHHHHHHH----HH--HHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCC
Q psy13072 39 AIYIYKVLKQVHPDTGVSSKAMSIMNSFVN----DI--FERIAAESSRLAHYNKRSTITSREIQTAVRLLLP 104 (257)
Q Consensus 39 ~~yI~KVLKqVhpd~~ISskam~imnSfv~----Di--ferIa~EAs~L~~~~kk~TltsreIqtAvrllLp 104 (257)
..++...+.+..++..++..++..+..+.. |+ ...+...|..++......+|+..+|..|+..+.+
T Consensus 203 ~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 274 (386)
T 2qby_A 203 EDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIER 274 (386)
T ss_dssp HHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhh
Confidence 345555555555667788888876666553 22 2347777888887778889999999999887654
No 118
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=21.38 E-value=1.8e+02 Score=22.07 Aligned_cols=62 Identities=16% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHhhhh--CCCCCcchHHHH----HHHHHHHHHHHHHHHHHhhhhhh---cCCCCCChhHHHHHHHHhC
Q psy13072 42 IYKVLKQV--HPDTGVSSKAMS----IMNSFVNDIFERIAAESSRLAHY---NKRSTITSREIQTAVRLLL 103 (257)
Q Consensus 42 I~KVLKqV--hpd~~ISskam~----imnSfv~DiferIa~EAs~L~~~---~kk~TltsreIqtAvrllL 103 (257)
|-|+|.+- .+++.|+..|+. .|+-||+.-+-|-.++.-....- ..-..|+..|+..-+-|||
T Consensus 7 laRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLEkiaGlL~ 77 (88)
T 3v9r_B 7 LIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLERIVGLLL 77 (88)
T ss_dssp HHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHHHHHHHHH
No 119
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=21.37 E-value=97 Score=25.56 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=28.5
Q ss_pred HHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCCh
Q psy13072 71 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 105 (257)
Q Consensus 71 ferIa~EAs~L~~~~kk~TltsreIqtAvrllLpG 105 (257)
.+.+..+|..++...++.+|+..++..|+..++.|
T Consensus 221 l~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 255 (257)
T 1lv7_A 221 LANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMG 255 (257)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHhcC
Confidence 34677788888887888899999999999988765
Done!