RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13072
(257 letters)
>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 92
Score = 159 bits (405), Expect = 5e-51
Identities = 86/92 (93%), Positives = 90/92 (97%)
Query: 34 RKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSR 93
RKESY+IY+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSR
Sbjct: 1 RKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSR 60
Query: 94 EIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
EIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS
Sbjct: 61 EIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 92
Score = 159 bits (405), Expect = 5e-51
Identities = 86/92 (93%), Positives = 90/92 (97%)
Query: 165 RKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSR 224
RKESY+IY+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSR
Sbjct: 1 RKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSR 60
Query: 225 EIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 256
EIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS
Sbjct: 61 EIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 92
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 90.2 bits (224), Expect = 5e-23
Identities = 27/205 (13%), Positives = 65/205 (31%), Gaps = 49/205 (23%)
Query: 27 KKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNK 86
++ + + + KV QVHP + A+ + + + + R
Sbjct: 7 SEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQAQPR------ 60
Query: 87 RSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSKSNPLQFIMAAGKSSGKAVKK 146
++ +++ V+ P + K A+++ A+ K + NPL +
Sbjct: 61 ----SASDVEERVQKSFPHPIDKWAIADAQSAIEKRK--RRNPLSLPVE----------- 103
Query: 147 AGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIA 206
I+ +LK+V + + + + + I I
Sbjct: 104 -------------------------KIHPLLKEVLGYK-IDHQVSVYIVAVLEYISADIL 137
Query: 207 AESSRLAHYNKRSTITSREIQTAVR 231
+ + IT ++I+ A+
Sbjct: 138 KLAGNYVRNIRHYEITKQDIKVAMC 162
Score = 84.5 bits (209), Expect = 8e-21
Identities = 14/97 (14%), Positives = 36/97 (37%), Gaps = 10/97 (10%)
Query: 159 KKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKR 218
++ + + + KV QVHP + A+ + + + + R
Sbjct: 8 EENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQAQPR------- 60
Query: 219 STITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 255
++ +++ V+ P + K A+++ A+ K
Sbjct: 61 ---SASDVEERVQKSFPHPIDKWAIADAQSAIEKRKR 94
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 151
Score = 84.5 bits (209), Expect = 4e-21
Identities = 26/199 (13%), Positives = 63/199 (31%), Gaps = 56/199 (28%)
Query: 42 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 101
I ++ +Q + +S A + FV + E +A + + + + T+ ++ +
Sbjct: 7 IERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADV 66
Query: 102 LLPGELAKHAVSEGTKAVTKYTSSKSNPLQFIMAAGKSSGKAVKKAGKAQKNIAKSDKKK 161
L+ + + +A + I K +
Sbjct: 67 LMVEGVEDYDGELFGRATV-------------------------------RRILKRAGIE 95
Query: 162 KHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTI 221
+ SS A+ + N + E + +++ A + R T+
Sbjct: 96 R-----------------------ASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTV 132
Query: 222 TSREIQTAVRLLLP--GEL 238
+++ A+ +P GEL
Sbjct: 133 QGEDVEKAITYSMPKGGEL 151
Score = 77.9 bits (192), Expect = 1e-18
Identities = 11/80 (13%), Positives = 32/80 (40%)
Query: 173 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 232
I ++ +Q + +S A + FV + E +A + + + + T+ ++ +
Sbjct: 7 IERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADV 66
Query: 233 LLPGELAKHAVSEGTKAVTK 252
L+ + + +A +
Sbjct: 67 LMVEGVEDYDGELFGRATVR 86
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 32.5 bits (74), Expect = 0.013
Identities = 14/59 (23%), Positives = 25/59 (42%)
Query: 42 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 100
+ + +K+ HP + A M + + + I + A NK+ +T R I AV
Sbjct: 17 MLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 75
Score = 32.5 bits (74), Expect = 0.013
Identities = 14/59 (23%), Positives = 25/59 (42%)
Query: 173 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 231
+ + +K+ HP + A M + + + I + A NK+ +T R I AV
Sbjct: 17 MLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 75
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 31.2 bits (71), Expect = 0.014
Identities = 7/58 (12%), Positives = 25/58 (43%)
Query: 42 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAV 99
I K+++ V++ I++ + E + ++ ++ T+T+ ++ +
Sbjct: 8 IKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCI 65
Score = 31.2 bits (71), Expect = 0.014
Identities = 7/58 (12%), Positives = 25/58 (43%)
Query: 173 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAV 230
I K+++ V++ I++ + E + ++ ++ T+T+ ++ +
Sbjct: 8 IKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCI 65
>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone
fold domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 28.9 bits (65), Expect = 0.13
Identities = 10/55 (18%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 46 LKQVHPDTGVSSKA----MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQ 96
+++V P+ + + I + F+ + + +LA + K ST+ +++Q
Sbjct: 13 VREVDPNEQLDEDVEEMLLQIADDFIESVVTA----ACQLARHRKSSTLEVKDVQ 63
Score = 28.9 bits (65), Expect = 0.13
Identities = 10/55 (18%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 177 LKQVHPDTGVSSKA----MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQ 227
+++V P+ + + I + F+ + + +LA + K ST+ +++Q
Sbjct: 13 VREVDPNEQLDEDVEEMLLQIADDFIESVVTA----ACQLARHRKSSTLEVKDVQ 63
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma
(Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 29.0 bits (65), Expect = 0.13
Identities = 11/59 (18%), Positives = 22/59 (37%)
Query: 42 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 100
I K++K +S++A + + + NKR T+ +I A+
Sbjct: 6 IKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT 64
Score = 29.0 bits (65), Expect = 0.13
Identities = 11/59 (18%), Positives = 22/59 (37%)
Query: 173 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 231
I K++K +S++A + + + NKR T+ +I A+
Sbjct: 6 IKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT 64
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta
(Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 28.6 bits (64), Expect = 0.19
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 42 IYKVLKQVHPDTG-VSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 100
+ +++K P TG ++ A + V++ I +E+S H KR TI +I A+
Sbjct: 8 VARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 67
Score = 28.6 bits (64), Expect = 0.19
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 173 IYKVLKQVHPDTG-VSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 231
+ +++K P TG ++ A + V++ I +E+S H KR TI +I A+
Sbjct: 8 VARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 67
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus
fervidus, histone A [TaxId: 2180]}
Length = 68
Score = 27.8 bits (62), Expect = 0.29
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 55 VSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 102
VS A + + ++ E IA+E+ +LA + R TI + +I+ A ++
Sbjct: 21 VSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 68
Score = 27.8 bits (62), Expect = 0.29
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 186 VSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 233
VS A + + ++ E IA+E+ +LA + R TI + +I+ A ++
Sbjct: 21 VSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 68
>d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 327
Score = 29.2 bits (65), Expect = 0.47
Identities = 16/66 (24%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Query: 23 KSDKKKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSR-L 81
K + K K IY V G S +A M SF R+ ES
Sbjct: 182 KPKEDKLKLVPELSDMIIYCKSVHFGGFSSPGTSGQAFYEMASFSESRALRLLQESGNGF 241
Query: 82 AHYNKR 87
+N
Sbjct: 242 VRHNVS 247
Score = 27.7 bits (61), Expect = 1.6
Identities = 17/64 (26%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
Query: 156 KSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSR-LAH 214
K DK K IY V G S +A M SF R+ ES
Sbjct: 184 KEDKLKLVPELSDMIIYCKSVHFGGFSSPGTSGQAFYEMASFSESRALRLLQESGNGFVR 243
Query: 215 YNKR 218
+N
Sbjct: 244 HNVS 247
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 89
Score = 27.5 bits (61), Expect = 0.59
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 42 IYKVLKQVHPDTG-VSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 100
I +++K+ P++ VS +A + + + + + S+ LAH TIT+++I +
Sbjct: 5 IGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLT 64
Query: 101 LL 102
L
Sbjct: 65 EL 66
Score = 27.5 bits (61), Expect = 0.59
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 173 IYKVLKQVHPDTG-VSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 231
I +++K+ P++ VS +A + + + + + S+ LAH TIT+++I +
Sbjct: 5 IGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLT 64
Query: 232 LL 233
L
Sbjct: 65 EL 66
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus
horikoshii) [TaxId: 53953]}
Length = 66
Score = 25.9 bits (57), Expect = 1.2
Identities = 10/59 (16%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 42 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 100
+ +++++ VS +A ++ ++ + IA ++ A + R T+ +I+ A++
Sbjct: 8 VDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 65
Score = 25.9 bits (57), Expect = 1.2
Identities = 10/59 (16%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 173 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 231
+ +++++ VS +A ++ ++ + IA ++ A + R T+ +I+ A++
Sbjct: 8 VDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 65
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 82
Score = 25.9 bits (57), Expect = 1.6
Identities = 7/46 (15%), Positives = 19/46 (41%)
Query: 55 VSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 100
+S + E + ++ + KR T+T+ ++ A++
Sbjct: 27 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALK 72
Score = 25.9 bits (57), Expect = 1.6
Identities = 7/46 (15%), Positives = 19/46 (41%)
Query: 186 VSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 231
+S + E + ++ + KR T+T+ ++ A++
Sbjct: 27 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALK 72
>d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 417
Score = 25.8 bits (56), Expect = 6.0
Identities = 4/40 (10%), Positives = 13/40 (32%)
Query: 113 SEGTKAVTKYTSSKSNPLQFIMAAGKSSGKAVKKAGKAQK 152
++G+ + + G + V++ K +
Sbjct: 350 AKGSIECLNLVVEVTKKGAITIVGGGDTASLVEQQNKKNE 389
>d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 413
Score = 25.5 bits (55), Expect = 8.2
Identities = 6/40 (15%), Positives = 13/40 (32%)
Query: 113 SEGTKAVTKYTSSKSNPLQFIMAAGKSSGKAVKKAGKAQK 152
++GTKA+ ++ + G + K
Sbjct: 345 AQGTKALMDEVVKATSRGCITIIGGGDTATCCAKWNTEDN 384
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.122 0.317
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 802,980
Number of extensions: 33820
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 40
Length of query: 257
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 174
Effective length of database: 1,268,006
Effective search space: 220633044
Effective search space used: 220633044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (23.8 bits)