BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13076
(423 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 344 bits (882), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 168/348 (48%), Positives = 227/348 (65%), Gaps = 6/348 (1%)
Query: 81 IFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYS 140
+F +LPRT RG +VLG P G Y NG SV + + ++IYTEHS VAK S
Sbjct: 9 LFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTS 68
Query: 141 PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF 200
PSG+Y ASGD+ G VRIWDT HILK GP+KDI+W +++R+ VGEGRERF
Sbjct: 69 PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF 128
Query: 201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE 260
GHVF+ +TGTS G ++GQ++ +NS DFKPSRPFRII+GS+DNT+A+FEGPPFKFK T E
Sbjct: 129 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE 188
Query: 261 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLV-----SELGNPAHKGGVYAVAWK 315
H++FV +VRY+P GS FAS G DG + LY+G L N AH G V+ + W
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248
Query: 316 PDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISY 375
PDGT++ +AS DKT K+W++ T +G ++EDQQ+ +W L+++S +GFI++
Sbjct: 249 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 308
Query: 376 LDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
++ S +V GHNK ITAL+ S D T+F+ +G I W+ T
Sbjct: 309 VNPELGSID-QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST 355
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 136/341 (39%), Gaps = 16/341 (4%)
Query: 1 MGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRG 60
+G ++EDQQ+ +W L+++S +GFI++++ S +V GHNK ITAL+ S D
Sbjct: 279 VGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSID-QVRYGHNKAITALSSSADGK 337
Query: 61 TVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN 120
T+F+ +G I W+ T P + KG F + + + +
Sbjct: 338 TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVV---- 393
Query: 121 PAISDIYTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
PA N P G + A GDI+ H E PI
Sbjct: 394 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYNSS 452
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKP--INSCDFKPSRPFRIIT 237
+A S D Q V VG G++ HV+ +G SV E+ P I S F + F + T
Sbjct: 453 CVALSNDKQ-FVAVG-GQDSKVHVY-KLSGASVSEVKTIVHPAEITSVAFSNNGAFLVAT 509
Query: 238 GSEDNTIAVFEGPPFKFKMTKQE--HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD 295
I F+ T H+ V V +SP A+ D V +++
Sbjct: 510 DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569
Query: 296 LVSELGNPAHK-GGVYAVAWKPDGTQLLTASGDKTCKLWDI 335
+ AH V +V W + T +++A D K W++
Sbjct: 570 DHPIIIKGAHAMSSVNSVIWLNE-TTIVSAGQDSNIKFWNV 609
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 91/398 (22%), Positives = 147/398 (36%), Gaps = 48/398 (12%)
Query: 45 GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKN 104
H+ + L SPD + + S D I WN T + T+P R + LG +
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA 296
Query: 105 FLYTNGNSVIIRNIENP---AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV 161
+ + N I N NP +I + H+ A+ S G + S D G + WD
Sbjct: 297 LVSISANGFI--NFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWD-- 352
Query: 162 NKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKP 221
I I + + PD ++ G G +F + +
Sbjct: 353 ------------ISTGISNRVF-PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSG 399
Query: 222 INS----CDFKPSRPFRIITGSEDNTIAVFEGPPFKF-------KMTKQEHSRFVQAVRY 270
++S + S+P + S D IAV +K K+T+ S V
Sbjct: 400 VDSSKAVANKLSSQPLGLAV-SADGDIAV--AACYKHIAIYSHGKLTEVPISYNSSCVAL 456
Query: 271 SPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTC 330
S A G D KV +Y + A VSE+ H + +VA+ +G L+ D++
Sbjct: 457 SNDKQFVAVGGQDSKVHVYKLSGAS-VSEVKTIVHPAEITSVAFSNNGAFLVAT--DQSR 513
Query: 331 KLWDIETKSAVSEFLMGN----QVEDQQVSCL-WQGD--YLLTVSLSGFISYLDVNNPST 383
K + S + F + + +V+C+ W D L T SL + ++N PS
Sbjct: 514 K---VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 570
Query: 384 PIRVIKG-HNKPITALALSPDRGTVFTGSHDGFITRWN 420
+IKG H + + T+ + D I WN
Sbjct: 571 HPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 608
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 198 bits (504), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 124/360 (34%), Positives = 201/360 (55%), Gaps = 29/360 (8%)
Query: 86 PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN-----PAISDIYTEHSCAVNVAKYS 140
P TQR L DP Y G S +R +++ P + S V K+S
Sbjct: 14 PSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFS 73
Query: 141 P--SGFYIASGDISGKVRIWD-TVNKEHI-----LKNEFHPIGGPIKDIAWSPDNQRMVV 192
P Y+ SGD SGKV +W T +KE +K+EF + GPI DI+W + +R+ V
Sbjct: 74 PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 133
Query: 193 VGEGRERFGHVFMS-ETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP 251
VGEGR+ FG VF+S ++G S+GE+SG S+ IN+C K SRP R +T +D ++ ++GPP
Sbjct: 134 VGEGRDNFG-VFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP 192
Query: 252 FKFKMTKQEHSR---FVQAVRYSP-SGSHFASAGFDGKVFLYDGASADLVSELGNPAH-- 305
FKF + + H + FV+ V +SP SG + G D K+ +DG S + + + +
Sbjct: 193 FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV 252
Query: 306 KGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEF-LMGNQVEDQQVSCLWQGD-Y 363
+GG++A++W D + T D T ++WD+ T V ++ L Q+ +QQV + G+
Sbjct: 253 QGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 311
Query: 364 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
++++SL G +++ ++ + ++ I GHNK ITAL ++P + +GS+DG I W++ +
Sbjct: 312 IISLSLDGTLNFYELGHDEV-LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS 366
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 49/78 (62%), Gaps = 6/78 (7%)
Query: 4 QVEDQQVSCLWQGD-YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTV 62
Q+ +QQV + G+ ++++SL G +++ ++ + ++ I GHNK ITAL ++P +
Sbjct: 296 QLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEV-LKTISGHNKGITALTVNP----L 350
Query: 63 FTGSHDGFITRWNAKTEY 80
+GS+DG I W++ + +
Sbjct: 351 ISGSYDGRIMEWSSSSMH 368
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 110 GNSVIIRNIENPAIS-DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 168
GN++ + + + +S D+ T + SPS YIA+GD+ GK+ ++D ++E +
Sbjct: 466 GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE-VKT 524
Query: 169 NEFHPIGGPIKDIAWSP 185
+ + I I+W P
Sbjct: 525 SRWAFRTSKINAISWKP 541
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 64/183 (34%), Gaps = 36/183 (19%)
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQA-VRYSPSGSHFASAGFDGKVFLYDGASADLVS 298
E NTI VF+ + + R + + SPS ++ A+ GK+ LYD S ++ +
Sbjct: 465 EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT 524
Query: 299 ELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCL 358
+ A++WKP +K +IE
Sbjct: 525 SRW-AFRTSKINAISWKP---------AEKGANEEEIEE--------------------- 553
Query: 359 WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITR 418
D + T SL I V P I+ + H + L L T+ + D I R
Sbjct: 554 ---DLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNL-LWETPSTLVSSGADACIKR 609
Query: 419 WNA 421
WN
Sbjct: 610 WNV 612
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 124/356 (34%), Positives = 197/356 (55%), Gaps = 29/356 (8%)
Query: 86 PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN-----PAISDIYTEHSCAVNVAKYS 140
P TQR L DP Y G S +R +++ P + S V K+S
Sbjct: 14 PSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFS 73
Query: 141 P--SGFYIASGDISGKVRIWD-TVNKEHI-----LKNEFHPIGGPIKDIAWSPDNQRMVV 192
P Y+ SGD SGKV +W T +KE +K+EF + GPI DI+W + +R+ V
Sbjct: 74 PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 133
Query: 193 VGEGRERFGHVFMS-ETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP 251
VGEGR+ FG VF+S ++G S+GE+SG S+ IN+C K SRP R T +D ++ ++GPP
Sbjct: 134 VGEGRDNFG-VFISWDSGNSLGEVSGHSQRINACHLKQSRPXRSXTVGDDGSVVFYQGPP 192
Query: 252 FKFKMTKQEHSR---FVQAVRYSP-SGSHFASAGFDGKVFLYDGASADLVSELGNPAH-- 305
FKF + + H + FV+ V +SP SG + G D K+ +DG S + + + +
Sbjct: 193 FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV 252
Query: 306 KGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEF-LMGNQVEDQQVSCLWQGD-Y 363
+GG++A++W D + T D T ++WD+ T V ++ L Q+ +QQV + G+
Sbjct: 253 QGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 311
Query: 364 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRW 419
++++SL G +++ ++ + ++ I GHNK ITAL ++P + +GS+DG I W
Sbjct: 312 IISLSLDGTLNFYELGHDEV-LKTISGHNKGITALTVNP----LISGSYDGRIXEW 362
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 4 QVEDQQVSCLWQGD-YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTV 62
Q+ +QQV + G+ ++++SL G +++ ++ + ++ I GHNK ITAL ++P +
Sbjct: 296 QLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEV-LKTISGHNKGITALTVNP----L 350
Query: 63 FTGSHDGFITRW 74
+GS+DG I W
Sbjct: 351 ISGSYDGRIXEW 362
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 110 GNSVIIRNIENPAIS-DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 168
GN++ + + + +S D+ T + SPS YIA+GD+ GK+ ++D ++E +
Sbjct: 466 GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVXGKILLYDLQSRE-VKT 524
Query: 169 NEFHPIGGPIKDIAWSP 185
+ + I I+W P
Sbjct: 525 SRWAFRTSKINAISWKP 541
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 64/183 (34%), Gaps = 36/183 (19%)
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQA-VRYSPSGSHFASAGFDGKVFLYDGASADLVS 298
E NTI VF+ + + R + + SPS ++ A+ GK+ LYD S ++ +
Sbjct: 465 EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVXGKILLYDLQSREVKT 524
Query: 299 ELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCL 358
+ A++WKP +K +IE
Sbjct: 525 SRW-AFRTSKINAISWKP---------AEKGANEEEIEE--------------------- 553
Query: 359 WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITR 418
D + T SL I V P I+ + H + L L T+ + D I R
Sbjct: 554 ---DLVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNL-LWETPSTLVSSGADACIKR 609
Query: 419 WNA 421
WN
Sbjct: 610 WNV 612
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 94/384 (24%), Positives = 164/384 (42%), Gaps = 23/384 (5%)
Query: 40 IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGG- 98
++ + GH+ + +A SPD T+ + S D + WN + + +T G + G
Sbjct: 91 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL-----QTLTGHSSSVWGV 145
Query: 99 --DPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVR 156
P G+ + + + N + T HS +V +SP G IAS V+
Sbjct: 146 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 205
Query: 157 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS 216
+W N+ L ++ +A+SPD Q + + + + G + ++
Sbjct: 206 LW---NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV---KLWNRNGQLLQTLT 259
Query: 217 GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH 276
G S +N F+P I + S+D T+ ++ + T HS V V +SP G
Sbjct: 260 GHSSSVNGVAFRPDGQ-TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQT 317
Query: 277 FASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIE 336
ASA D V L++ L + G H V+ VA+ PDG + +AS DKT KLW+
Sbjct: 318 IASASDDKTVKLWNRNGQHLQTLTG---HSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 374
Query: 337 TKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPIT 396
+ + + L G+ + V+ G + + S + + N ++ + GH+ +
Sbjct: 375 GQ--LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVW 430
Query: 397 ALALSPDRGTVFTGSHDGFITRWN 420
+A SPD T+ + S D + WN
Sbjct: 431 GVAFSPDDQTIASASDDKTVKLWN 454
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 89/381 (23%), Positives = 160/381 (41%), Gaps = 17/381 (4%)
Query: 40 IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGD 99
++ + GH+ + +A SPD T+ + S D + WN + + + + +
Sbjct: 173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF--S 230
Query: 100 PKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 159
P G+ + + + N + T HS +VN + P G IAS V++W
Sbjct: 231 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW- 289
Query: 160 TVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQS 219
N+ L + +A+SPD Q + + + + G + ++G S
Sbjct: 290 --NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV---KLWNRNGQHLQTLTGHS 344
Query: 220 KPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFAS 279
+ F P I + S+D T+ ++ + T HS V+ V +SP G AS
Sbjct: 345 SSVWGVAFSPDGQ-TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIAS 402
Query: 280 AGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKS 339
A D V L++ + L+ L H V+ VA+ PD + +AS DKT KLW+ +
Sbjct: 403 ASDDKTVKLWN-RNGQLLQTL--TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ- 458
Query: 340 AVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALA 399
+ + L G+ + V+ G + + S + + N ++ + GH+ + +A
Sbjct: 459 -LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVRGVA 515
Query: 400 LSPDRGTVFTGSHDGFITRWN 420
SPD T+ + S D + WN
Sbjct: 516 FSPDGQTIASASDDKTVKLWN 536
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/384 (24%), Positives = 163/384 (42%), Gaps = 23/384 (5%)
Query: 40 IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGG- 98
++ + GH+ + +A SPD T+ + S D + WN + + +T G + G
Sbjct: 214 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL-----QTLTGHSSSVNGV 268
Query: 99 --DPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVR 156
P G+ + + + N + T HS +V +SP G IAS V+
Sbjct: 269 AFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 328
Query: 157 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS 216
+W+ N +H+ H + +A+SPD Q + + + + G + ++
Sbjct: 329 LWNR-NGQHLQTLTGHS--SSVWGVAFSPDGQTIASASDDKTV---KLWNRNGQLLQTLT 382
Query: 217 GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH 276
G S + F P I + S+D T+ ++ + T HS V V +SP
Sbjct: 383 GHSSSVRGVAFSPDGQ-TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQT 440
Query: 277 FASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIE 336
ASA D V L++ + L+ L H V VA+ PDG + +AS DKT KLW+
Sbjct: 441 IASASDDKTVKLWN-RNGQLLQTL--TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 497
Query: 337 TKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPIT 396
+ + + L G+ + V+ G + + S + + N ++ + GH+ +
Sbjct: 498 GQ--LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVW 553
Query: 397 ALALSPDRGTVFTGSHDGFITRWN 420
+A SPD T+ + S D + WN
Sbjct: 554 GVAFSPDGQTIASASSDKTVKLWN 577
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 89/381 (23%), Positives = 157/381 (41%), Gaps = 17/381 (4%)
Query: 40 IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGD 99
++ + GH+ + +A SPD T+ + S D + WN + + + + +
Sbjct: 50 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF--S 107
Query: 100 PKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 159
P G+ + + + N + T HS +V +SP G IAS V++W
Sbjct: 108 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW- 166
Query: 160 TVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQS 219
N+ L + +A+SPD Q + + + + G + ++G S
Sbjct: 167 --NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV---KLWNRNGQLLQTLTGHS 221
Query: 220 KPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFAS 279
+ F P I + S+D T+ ++ + T HS V V + P G AS
Sbjct: 222 SSVRGVAFSPDGQ-TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIAS 279
Query: 280 AGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKS 339
A D V L++ + L+ L H V+ VA+ PDG + +AS DKT KLW+ +
Sbjct: 280 ASDDKTVKLWN-RNGQLLQTL--TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH 336
Query: 340 AVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALA 399
+ L G+ V+ G + + S + + N ++ + GH+ + +A
Sbjct: 337 L--QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVRGVA 392
Query: 400 LSPDRGTVFTGSHDGFITRWN 420
SPD T+ + S D + WN
Sbjct: 393 FSPDGQTIASASDDKTVKLWN 413
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 92/381 (24%), Positives = 160/381 (41%), Gaps = 23/381 (6%)
Query: 43 IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGG---D 99
++ H+ + +A SPD T+ + S D + WN + + +T G + G
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL-----QTLTGHSSSVWGVAFS 66
Query: 100 PKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 159
P G+ + + + N + T HS +V +SP G IAS V++W
Sbjct: 67 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW- 125
Query: 160 TVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQS 219
N+ L + +A+SPD Q + + + + G + ++G S
Sbjct: 126 --NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV---KLWNRNGQLLQTLTGHS 180
Query: 220 KPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFAS 279
+ F P I + S+D T+ ++ + T HS V+ V +SP G AS
Sbjct: 181 SSVWGVAFSPDGQ-TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIAS 238
Query: 280 AGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKS 339
A D V L++ + L+ L H V VA++PDG + +AS DKT KLW+ +
Sbjct: 239 ASDDKTVKLWN-RNGQLLQTL--TGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ- 294
Query: 340 AVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALA 399
+ + L G+ V+ G + + S + + N ++ + GH+ + +A
Sbjct: 295 -LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--HLQTLTGHSSSVWGVA 351
Query: 400 LSPDRGTVFTGSHDGFITRWN 420
SPD T+ + S D + WN
Sbjct: 352 FSPDGQTIASASDDKTVKLWN 372
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 111/253 (43%), Gaps = 12/253 (4%)
Query: 168 KNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDF 227
+N ++ +A+SPD Q + + + + G + ++G S + F
Sbjct: 9 RNRLEAHSSSVRGVAFSPDGQTIASASDDKTV---KLWNRNGQLLQTLTGHSSSVWGVAF 65
Query: 228 KPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVF 287
P I + S+D T+ ++ + T HS V+ V +SP G ASA D V
Sbjct: 66 SPDGQ-TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 123
Query: 288 LYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMG 347
L++ + L+ L H V+ VA+ PDG + +AS DKT KLW+ + + + L G
Sbjct: 124 LWN-RNGQLLQTL--TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTG 178
Query: 348 NQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTV 407
+ V+ G + + S + + N ++ + GH+ + +A SPD T+
Sbjct: 179 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVRGVAFSPDGQTI 236
Query: 408 FTGSHDGFITRWN 420
+ S D + WN
Sbjct: 237 ASASDDKTVKLWN 249
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 140/313 (44%), Gaps = 25/313 (7%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 29 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 86
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
D+AWS D+ +V + + ++ +G + + G S + C+F P I++GS
Sbjct: 87 DVAWSSDSNLLVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 143
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
D ++ +++ K T HS V AV ++ GS S+ +DG ++D AS +
Sbjct: 144 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 203
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVS 356
L NP V V + P+G +L A+ D T KLWD + + G++ E
Sbjct: 204 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKY--- 255
Query: 357 CLWQ------GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410
C++ G ++++ S + ++ ++ ++GH + + A P + +
Sbjct: 256 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASA 314
Query: 411 S--HDGFITRWNA 421
+ +D I W +
Sbjct: 315 ALENDKTIKLWKS 327
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 306
P + K T H++ V +V++SP+G AS+ D + + YDG +S HK
Sbjct: 28 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 82
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QGDYL 364
G+ VAW D L++AS DKT K+WD+ + + + L G+ + C + Q + +
Sbjct: 83 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGH--SNYVFCCNFNPQSNLI 139
Query: 365 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
++ S + DV ++ + H+ P++A+ + D + + S+DG W+
Sbjct: 140 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 194
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 122/297 (41%), Gaps = 13/297 (4%)
Query: 43 IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG 102
+ GH K ++++ SP+ + + S D I W A T+ + G V
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 103 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 162
++ ++ I ++ + HS V ++P I SG VRIWD
Sbjct: 96 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 155
Query: 163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE-ISGQSKP 221
+ + H P+ + ++ D ++V + ++ + +G + I + P
Sbjct: 156 GKCLKTLPAH--SDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 211
Query: 222 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH--SRFVQAVRYSPSGSHFAS 279
++ F P+ + I+ + DNT+ +++ K T H ++ +S +G +
Sbjct: 212 VSFVKFSPNGKY-ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 270
Query: 280 AGF-DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS--GDKTCKLW 333
+G D V++++ + ++V +L H V + A P + +A+ DKT KLW
Sbjct: 271 SGSEDNLVYIWNLQTKEIVQKL--QGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 97/247 (39%), Gaps = 9/247 (3%)
Query: 41 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDP 100
+ I GH I+ +A S D + + S D + W+ + TL + +P
Sbjct: 76 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 134
Query: 101 KGKNFLYTNG--NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 158
+ N + + SV I +++ HS V+ ++ G I S G RIW
Sbjct: 135 QS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 193
Query: 159 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ 218
DT + + LK P+ + +SP+ + ++ + ++ G + +G
Sbjct: 194 DTASGQ-CLKTLIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGH 250
Query: 219 --SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH 276
K +F + I++GSEDN + ++ + Q H+ V + P+ +
Sbjct: 251 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 310
Query: 277 FASAGFD 283
ASA +
Sbjct: 311 IASAALE 317
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 140/313 (44%), Gaps = 25/313 (7%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 75
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
D+AWS D+ +V + + ++ +G + + G S + C+F P I++GS
Sbjct: 76 DVAWSSDSNLLVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 132
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
D ++ +++ K T HS V AV ++ GS S+ +DG ++D AS +
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVS 356
L NP V V + P+G +L A+ D T KLWD + + G++ E
Sbjct: 193 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKY--- 244
Query: 357 CLWQ------GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410
C++ G ++++ S + ++ ++ ++GH + + A P + +
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASA 303
Query: 411 S--HDGFITRWNA 421
+ +D I W +
Sbjct: 304 ALENDKTIKLWKS 316
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 306
P + K T H++ V +V++SP+G AS+ D + + YDG +S HK
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 71
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QGDYL 364
G+ VAW D L++AS DKT K+WD+ + + + L G+ + C + Q + +
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHS--NYVFCCNFNPQSNLI 128
Query: 365 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
++ S + DV ++ + H+ P++A+ + D + + S+DG W+
Sbjct: 129 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 122/297 (41%), Gaps = 13/297 (4%)
Query: 43 IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG 102
+ GH K ++++ SP+ + + S D I W A T+ + G V
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 103 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 162
++ ++ I ++ + HS V ++P I SG VRIWD
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE-ISGQSKP 221
+ + H P+ + ++ D ++V + ++ + +G + I + P
Sbjct: 145 GKCLKTLPAH--SDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 222 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH--SRFVQAVRYSPSGSHFAS 279
++ F P+ + I+ + DNT+ +++ K T H ++ +S +G +
Sbjct: 201 VSFVKFSPNGKY-ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 259
Query: 280 AGF-DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS--GDKTCKLW 333
+G D V++++ + ++V +L H V + A P + +A+ DKT KLW
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKL--QGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 97/247 (39%), Gaps = 9/247 (3%)
Query: 41 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDP 100
+ I GH I+ +A S D + + S D + W+ + TL + +P
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 123
Query: 101 KGKNFLYTNG--NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 158
+ N + + SV I +++ HS V+ ++ G I S G RIW
Sbjct: 124 QS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 159 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ 218
DT + + LK P+ + +SP+ + ++ + ++ G + +G
Sbjct: 183 DTASGQ-CLKTLIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGH 239
Query: 219 --SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH 276
K +F + I++GSEDN + ++ + Q H+ V + P+ +
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 299
Query: 277 FASAGFD 283
ASA +
Sbjct: 300 IASAALE 306
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 140/313 (44%), Gaps = 25/313 (7%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 65
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
D+AWS D+ +V + + ++ +G + + G S + C+F P I++GS
Sbjct: 66 DVAWSSDSNLLVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 122
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
D ++ +++ K T HS V AV ++ GS S+ +DG ++D AS +
Sbjct: 123 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 182
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVS 356
L NP V V + P+G +L A+ D T KLWD + + G++ E
Sbjct: 183 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKY--- 234
Query: 357 CLWQ------GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410
C++ G ++++ S + ++ ++ ++GH + + A P + +
Sbjct: 235 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASA 293
Query: 411 S--HDGFITRWNA 421
+ +D I W +
Sbjct: 294 ALENDKTIKLWKS 306
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 306
P + K T H++ V +V++SP+G AS+ D + + YDG +S HK
Sbjct: 7 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 61
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QGDYL 364
G+ VAW D L++AS DKT K+WD+ + + + L G+ + C + Q + +
Sbjct: 62 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHS--NYVFCCNFNPQSNLI 118
Query: 365 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
++ S + DV ++ + H+ P++A+ + D + + S+DG W+
Sbjct: 119 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 173
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 122/297 (41%), Gaps = 13/297 (4%)
Query: 43 IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG 102
+ GH K ++++ SP+ + + S D I W A T+ + G V
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 103 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 162
++ ++ I ++ + HS V ++P I SG VRIWD
Sbjct: 75 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 134
Query: 163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE-ISGQSKP 221
+ + H P+ + ++ D ++V + ++ + +G + I + P
Sbjct: 135 GKCLKTLPAH--SDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 190
Query: 222 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH--SRFVQAVRYSPSGSHFAS 279
++ F P+ + I+ + DNT+ +++ K T H ++ +S +G +
Sbjct: 191 VSFVKFSPNGKY-ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 249
Query: 280 AGF-DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS--GDKTCKLW 333
+G D V++++ + ++V +L H V + A P + +A+ DKT KLW
Sbjct: 250 SGSEDNLVYIWNLQTKEIVQKL--QGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 97/247 (39%), Gaps = 9/247 (3%)
Query: 41 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDP 100
+ I GH I+ +A S D + + S D + W+ + TL + +P
Sbjct: 55 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 113
Query: 101 KGKNFLYTNG--NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 158
+ N + + SV I +++ HS V+ ++ G I S G RIW
Sbjct: 114 QS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172
Query: 159 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ 218
DT + + LK P+ + +SP+ + ++ + ++ G + +G
Sbjct: 173 DTASGQ-CLKTLIDDDNPPVSFVKFSPNGKY--ILAATLDNTLKLWDYSKGKCLKTYTGH 229
Query: 219 --SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH 276
K +F + I++GSEDN + ++ + Q H+ V + P+ +
Sbjct: 230 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 289
Query: 277 FASAGFD 283
ASA +
Sbjct: 290 IASAALE 296
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 140/313 (44%), Gaps = 25/313 (7%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 68
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
D+AWS D+ +V + + ++ +G + + G S + C+F P I++GS
Sbjct: 69 DVAWSSDSNLLVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 125
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
D ++ +++ K T HS V AV ++ GS S+ +DG ++D AS +
Sbjct: 126 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 185
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVS 356
L NP V V + P+G +L A+ D T KLWD + + G++ E
Sbjct: 186 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKY--- 237
Query: 357 CLWQ------GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410
C++ G ++++ S + ++ ++ ++GH + + A P + +
Sbjct: 238 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASA 296
Query: 411 S--HDGFITRWNA 421
+ +D I W +
Sbjct: 297 ALENDKTIKLWKS 309
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 306
P + K T H++ V +V++SP+G AS+ D + + YDG +S HK
Sbjct: 10 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 64
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QGDYL 364
G+ VAW D L++AS DKT K+WD+ + + + L G+ + C + Q + +
Sbjct: 65 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHS--NYVFCCNFNPQSNLI 121
Query: 365 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
++ S + DV ++ + H+ P++A+ + D + + S+DG W+
Sbjct: 122 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 176
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/310 (20%), Positives = 127/310 (40%), Gaps = 20/310 (6%)
Query: 37 STPIR-------VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQ 89
STP++ + GH K ++++ SP+ + + S D I W A T+ +
Sbjct: 5 STPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 64
Query: 90 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASG 149
G V ++ ++ I ++ + HS V ++P I SG
Sbjct: 65 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 124
Query: 150 DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG 209
VRIWD + + H P+ + ++ D ++V + ++ + +G
Sbjct: 125 SFDESVRIWDVKTGKCLKTLPAH--SDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASG 180
Query: 210 TSVGE-ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH--SRFVQ 266
+ I + P++ F P+ + I+ + DNT+ +++ K T H ++
Sbjct: 181 QCLKTLIDDDNPPVSFVKFSPNGKY-ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 239
Query: 267 AVRYSPSGSHFASAGF-DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS 325
+S +G + +G D V++++ + ++V +L H V + A P + +A+
Sbjct: 240 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL--QGHTDVVISTACHPTENIIASAA 297
Query: 326 --GDKTCKLW 333
DKT KLW
Sbjct: 298 LENDKTIKLW 307
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/274 (20%), Positives = 98/274 (35%), Gaps = 50/274 (18%)
Query: 14 WQGDYLLTVSLSG--FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFI 71
W D L VS S + DV++ ++ +KGH+ + +P + +GS D +
Sbjct: 72 WSSDSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 130
Query: 72 TRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHS 131
W+ KT TLP HS
Sbjct: 131 RIWDVKTGKCLKTLP------------------------------------------AHS 148
Query: 132 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMV 191
V+ ++ G I S G RIWDT + + LK P+ + +SP+ +
Sbjct: 149 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKY-- 205
Query: 192 VVGEGRERFGHVFMSETGTSVGEISGQ--SKPINSCDFKPSRPFRIITGSEDNTIAVFEG 249
++ + ++ G + +G K +F + I++GSEDN + ++
Sbjct: 206 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 265
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD 283
+ Q H+ V + P+ + ASA +
Sbjct: 266 QTKEIVQKLQGHTDVVISTACHPTENIIASAALE 299
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 140/313 (44%), Gaps = 25/313 (7%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 17 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 74
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
D+AWS D+ +V + + ++ +G + + G S + C+F P I++GS
Sbjct: 75 DVAWSSDSNLLVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 131
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
D ++ +++ K T HS V AV ++ GS S+ +DG ++D AS +
Sbjct: 132 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 191
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVS 356
L NP V V + P+G +L A+ D T KLWD + + G++ E
Sbjct: 192 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKY--- 243
Query: 357 CLWQ------GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410
C++ G ++++ S + ++ ++ ++GH + + A P + +
Sbjct: 244 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASA 302
Query: 411 S--HDGFITRWNA 421
+ +D I W +
Sbjct: 303 ALENDKTIKLWKS 315
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 306
P + K T H++ V +V++SP+G AS+ D + + YDG +S HK
Sbjct: 16 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 70
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QGDYL 364
G+ VAW D L++AS DKT K+WD+ + + + L G+ + C + Q + +
Sbjct: 71 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHS--NYVFCCNFNPQSNLI 127
Query: 365 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
++ S + DV ++ + H+ P++A+ + D + + S+DG W+
Sbjct: 128 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 182
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 122/297 (41%), Gaps = 13/297 (4%)
Query: 43 IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG 102
+ GH K ++++ SP+ + + S D I W A T+ + G V
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 103 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 162
++ ++ I ++ + HS V ++P I SG VRIWD
Sbjct: 84 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 143
Query: 163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE-ISGQSKP 221
+ + H P+ + ++ D ++V + ++ + +G + I + P
Sbjct: 144 GKCLKTLPAH--SDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 199
Query: 222 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH--SRFVQAVRYSPSGSHFAS 279
++ F P+ + I+ + DNT+ +++ K T H ++ +S +G +
Sbjct: 200 VSFVKFSPNGKY-ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 258
Query: 280 AGF-DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS--GDKTCKLW 333
+G D V++++ + ++V +L H V + A P + +A+ DKT KLW
Sbjct: 259 SGSEDNLVYIWNLQTKEIVQKL--QGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 97/247 (39%), Gaps = 9/247 (3%)
Query: 41 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDP 100
+ I GH I+ +A S D + + S D + W+ + TL + +P
Sbjct: 64 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 122
Query: 101 KGKNFLYTNG--NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 158
+ N + + SV I +++ HS V+ ++ G I S G RIW
Sbjct: 123 QS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 181
Query: 159 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ 218
DT + + LK P+ + +SP+ + ++ + ++ G + +G
Sbjct: 182 DTASGQ-CLKTLIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGH 238
Query: 219 --SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH 276
K +F + I++GSEDN + ++ + Q H+ V + P+ +
Sbjct: 239 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 298
Query: 277 FASAGFD 283
ASA +
Sbjct: 299 IASAALE 305
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 140/313 (44%), Gaps = 25/313 (7%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 75
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
D+AWS D+ +V + + ++ +G + + G S + C+F P I++GS
Sbjct: 76 DVAWSSDSNLLVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 132
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
D ++ +++ K T HS V AV ++ GS S+ +DG ++D AS +
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVS 356
L NP V V + P+G +L A+ D T KLWD + + G++ E
Sbjct: 193 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKY--- 244
Query: 357 CLWQ------GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410
C++ G ++++ S + ++ ++ ++GH + + A P + +
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASA 303
Query: 411 S--HDGFITRWNA 421
+ +D I W +
Sbjct: 304 ALENDKTIKLWKS 316
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 306
P + K T H++ V +V++SP+G AS+ D + + YDG +S HK
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 71
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QGDYL 364
G+ VAW D L++AS DKT K+WD+ + + + L G+ + C + Q + +
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGH--SNYVFCCNFNPQSNLI 128
Query: 365 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
++ S + DV ++ + H+ P++A+ + D + + S+DG W+
Sbjct: 129 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 122/297 (41%), Gaps = 13/297 (4%)
Query: 43 IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG 102
+ GH K ++++ SP+ + + S D I W A T+ + G V
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 103 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 162
++ ++ I ++ + HS V ++P I SG VRIWD
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE-ISGQSKP 221
+ + H P+ + ++ D ++V + ++ + +G + I + P
Sbjct: 145 GKCLKTLPAH--SDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 222 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH--SRFVQAVRYSPSGSHFAS 279
++ F P+ + I+ + DNT+ +++ K T H ++ +S +G +
Sbjct: 201 VSFVKFSPNGKY-ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 259
Query: 280 AGF-DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS--GDKTCKLW 333
+G D V++++ + ++V +L H V + A P + +A+ DKT KLW
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKL--QGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 97/247 (39%), Gaps = 9/247 (3%)
Query: 41 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDP 100
+ I GH I+ +A S D + + S D + W+ + TL + +P
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 123
Query: 101 KGKNFLYTNG--NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 158
+ N + + SV I +++ HS V+ ++ G I S G RIW
Sbjct: 124 QS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 159 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ 218
DT + + LK P+ + +SP+ + ++ + ++ G + +G
Sbjct: 183 DTASGQ-CLKTLIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGH 239
Query: 219 --SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH 276
K +F + I++GSEDN + ++ + Q H+ V + P+ +
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 299
Query: 277 FASAGFD 283
ASA +
Sbjct: 300 IASAALE 306
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 140/313 (44%), Gaps = 25/313 (7%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 75
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
D+AWS D+ +V + + ++ +G + + G S + C+F P I++GS
Sbjct: 76 DVAWSSDSNLLVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 132
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
D ++ +++ K T HS V AV ++ GS S+ +DG ++D AS +
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVS 356
L NP V V + P+G +L A+ D T KLWD + + G++ E
Sbjct: 193 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKY--- 244
Query: 357 CLWQ------GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410
C++ G ++++ S + ++ ++ ++GH + + A P + +
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASA 303
Query: 411 S--HDGFITRWNA 421
+ +D I W +
Sbjct: 304 ALENDKTIKLWKS 316
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 306
P + K T H++ V +V++SP+G AS+ D + + YDG +S HK
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 71
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QGDYL 364
G+ VAW D L++AS DKT K+WD+ + + + L G+ + C + Q + +
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHS--NYVFCCNFNPQSNLI 128
Query: 365 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
++ S + DV ++ + H+ P++A+ + D + + S+DG W+
Sbjct: 129 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 122/297 (41%), Gaps = 13/297 (4%)
Query: 43 IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG 102
+ GH K ++++ SP+ + + S D I W A T+ + G V
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 103 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 162
++ ++ I ++ + HS V ++P I SG VRIWD
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE-ISGQSKP 221
+ + H P+ + ++ D ++V + ++ + +G + I + P
Sbjct: 145 GKCLKTLPAH--SDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 222 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH--SRFVQAVRYSPSGSHFAS 279
++ F P+ + I+ + DNT+ +++ K T H ++ +S +G +
Sbjct: 201 VSFVKFSPNGKY-ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 259
Query: 280 AGF-DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS--GDKTCKLW 333
+G D V++++ + ++V +L H V + A P + +A+ DKT KLW
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKL--QGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 97/247 (39%), Gaps = 9/247 (3%)
Query: 41 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDP 100
+ I GH I+ +A S D + + S D + W+ + TL + +P
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 123
Query: 101 KGKNFLYTNG--NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 158
+ N + + SV I +++ HS V+ ++ G I S G RIW
Sbjct: 124 QS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 159 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ 218
DT + + LK P+ + +SP+ + ++ + ++ G + +G
Sbjct: 183 DTASGQ-CLKTLIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGH 239
Query: 219 --SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH 276
K +F + I++GSEDN + ++ + Q H+ V + P+ +
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 299
Query: 277 FASAGFD 283
ASA +
Sbjct: 300 IASAALE 306
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 140/313 (44%), Gaps = 25/313 (7%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 13 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 70
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
D+AWS D+ +V + + ++ +G + + G S + C+F P I++GS
Sbjct: 71 DVAWSSDSNLLVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 127
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
D ++ +++ K T HS V AV ++ GS S+ +DG ++D AS +
Sbjct: 128 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 187
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVS 356
L NP V V + P+G +L A+ D T KLWD + + G++ E
Sbjct: 188 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKY--- 239
Query: 357 CLWQ------GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410
C++ G ++++ S + ++ ++ ++GH + + A P + +
Sbjct: 240 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASA 298
Query: 411 S--HDGFITRWNA 421
+ +D I W +
Sbjct: 299 ALENDKTIKLWKS 311
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 306
P + K T H++ V +V++SP+G AS+ D + + YDG +S HK
Sbjct: 12 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 66
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QGDYL 364
G+ VAW D L++AS DKT K+WD+ + + + L G+ + C + Q + +
Sbjct: 67 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGH--SNYVFCCNFNPQSNLI 123
Query: 365 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
++ S + DV ++ + H+ P++A+ + D + + S+DG W+
Sbjct: 124 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 178
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 122/297 (41%), Gaps = 13/297 (4%)
Query: 43 IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG 102
+ GH K ++++ SP+ + + S D I W A T+ + G V
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 103 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 162
++ ++ I ++ + HS V ++P I SG VRIWD
Sbjct: 80 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 139
Query: 163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE-ISGQSKP 221
+ + H P+ + ++ D ++V + ++ + +G + I + P
Sbjct: 140 GKCLKTLPAH--SDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 195
Query: 222 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH--SRFVQAVRYSPSGSHFAS 279
++ F P+ + I+ + DNT+ +++ K T H ++ +S +G +
Sbjct: 196 VSFVKFSPNGKY-ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 254
Query: 280 AGF-DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS--GDKTCKLW 333
+G D V++++ + ++V +L H V + A P + +A+ DKT KLW
Sbjct: 255 SGSEDNLVYIWNLQTKEIVQKL--QGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 97/247 (39%), Gaps = 9/247 (3%)
Query: 41 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDP 100
+ I GH I+ +A S D + + S D + W+ + TL + +P
Sbjct: 60 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 118
Query: 101 KGKNFLYTNG--NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 158
+ N + + SV I +++ HS V+ ++ G I S G RIW
Sbjct: 119 QS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 177
Query: 159 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ 218
DT + + LK P+ + +SP+ + ++ + ++ G + +G
Sbjct: 178 DTASGQ-CLKTLIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGH 234
Query: 219 --SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH 276
K +F + I++GSEDN + ++ + Q H+ V + P+ +
Sbjct: 235 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 294
Query: 277 FASAGFD 283
ASA +
Sbjct: 295 IASAALE 301
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 140/313 (44%), Gaps = 25/313 (7%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 69
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
D+AWS D+ +V + + ++ +G + + G S + C+F P I++GS
Sbjct: 70 DVAWSSDSNLLVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 126
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
D ++ +++ K T HS V AV ++ GS S+ +DG ++D AS +
Sbjct: 127 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 186
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVS 356
L NP V V + P+G +L A+ D T KLWD + + G++ E
Sbjct: 187 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKY--- 238
Query: 357 CLWQ------GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410
C++ G ++++ S + ++ ++ ++GH + + A P + +
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASA 297
Query: 411 S--HDGFITRWNA 421
+ +D I W +
Sbjct: 298 ALENDKTIKLWKS 310
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 306
P + K T H++ V +V++SP+G AS+ D + + YDG +S HK
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 65
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QGDYL 364
G+ VAW D L++AS DKT K+WD+ + + + L G+ + C + Q + +
Sbjct: 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGH--SNYVFCCNFNPQSNLI 122
Query: 365 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
++ S + DV ++ + H+ P++A+ + D + + S+DG W+
Sbjct: 123 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 122/297 (41%), Gaps = 13/297 (4%)
Query: 43 IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG 102
+ GH K ++++ SP+ + + S D I W A T+ + G V
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 103 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 162
++ ++ I ++ + HS V ++P I SG VRIWD
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE-ISGQSKP 221
+ + H P+ + ++ D ++V + ++ + +G + I + P
Sbjct: 139 GKCLKTLPAH--SDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194
Query: 222 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH--SRFVQAVRYSPSGSHFAS 279
++ F P+ + I+ + DNT+ +++ K T H ++ +S +G +
Sbjct: 195 VSFVKFSPNGKY-ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 253
Query: 280 AGF-DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS--GDKTCKLW 333
+G D V++++ + ++V +L H V + A P + +A+ DKT KLW
Sbjct: 254 SGSEDNLVYIWNLQTKEIVQKL--QGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 97/247 (39%), Gaps = 9/247 (3%)
Query: 41 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDP 100
+ I GH I+ +A S D + + S D + W+ + TL + +P
Sbjct: 59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 117
Query: 101 KGKNFLYTNG--NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 158
+ N + + SV I +++ HS V+ ++ G I S G RIW
Sbjct: 118 QS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 159 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ 218
DT + + LK P+ + +SP+ + ++ + ++ G + +G
Sbjct: 177 DTASGQ-CLKTLIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGH 233
Query: 219 --SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH 276
K +F + I++GSEDN + ++ + Q H+ V + P+ +
Sbjct: 234 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 293
Query: 277 FASAGFD 283
ASA +
Sbjct: 294 IASAALE 300
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 140/313 (44%), Gaps = 25/313 (7%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 69
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
D+AWS D+ +V + + ++ +G + + G S + C+F P I++GS
Sbjct: 70 DVAWSSDSNLLVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 126
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
D ++ +++ K T HS V AV ++ GS S+ +DG ++D AS +
Sbjct: 127 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 186
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVS 356
L NP V V + P+G +L A+ D T KLWD + + G++ E
Sbjct: 187 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKY--- 238
Query: 357 CLWQ------GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410
C++ G ++++ S + ++ ++ ++GH + + A P + +
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASA 297
Query: 411 S--HDGFITRWNA 421
+ +D I W +
Sbjct: 298 ALENDKTIKLWKS 310
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 306
P + K T H++ V +V++SP+G AS+ D + + YDG +S HK
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 65
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QGDYL 364
G+ VAW D L++AS DKT K+WD+ + + + L G+ + C + Q + +
Sbjct: 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGH--SNYVFCCNFNPQSNLI 122
Query: 365 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
++ S + DV ++ + H+ P++A+ + D + + S+DG W+
Sbjct: 123 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 122/297 (41%), Gaps = 13/297 (4%)
Query: 43 IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG 102
+ GH K ++++ SP+ + + S D I W A T+ + G V
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 103 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 162
++ ++ I ++ + HS V ++P I SG VRIWD
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE-ISGQSKP 221
+ + H P+ + ++ D ++V + ++ + +G + I + P
Sbjct: 139 GKCLKTLPAH--SDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194
Query: 222 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH--SRFVQAVRYSPSGSHFAS 279
++ F P+ + I+ + DNT+ +++ K T H ++ +S +G +
Sbjct: 195 VSFVKFSPNGKY-ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 253
Query: 280 AGF-DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS--GDKTCKLW 333
+G D V++++ + ++V +L H V + A P + +A+ DKT KLW
Sbjct: 254 SGSEDNLVYIWNLQTKEIVQKL--QGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 97/247 (39%), Gaps = 9/247 (3%)
Query: 41 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDP 100
+ I GH I+ +A S D + + S D + W+ + TL + +P
Sbjct: 59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 117
Query: 101 KGKNFLYTNG--NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 158
+ N + + SV I +++ HS V+ ++ G I S G RIW
Sbjct: 118 QS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 159 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ 218
DT + + LK P+ + +SP+ + ++ + ++ G + +G
Sbjct: 177 DTASGQ-CLKTLIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGH 233
Query: 219 --SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH 276
K +F + I++GSEDN + ++ + Q H+ V + P+ +
Sbjct: 234 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 293
Query: 277 FASAGFD 283
ASA +
Sbjct: 294 IASAALE 300
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 104/218 (47%), Gaps = 12/218 (5%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 72
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
D+AWS D+ +V + + ++ +G + + G S + C+F P I++GS
Sbjct: 73 DVAWSSDSNLLVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 129
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
D ++ +++ K T HS V AV ++ GS S+ +DG ++D AS +
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWD 334
L NP V V + P+G +L A+ D T KLWD
Sbjct: 190 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 87/179 (48%), Gaps = 14/179 (7%)
Query: 247 FEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNP 303
F P + K T H++ V +V++SP+G AS+ D + + YDG +S
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS----- 65
Query: 304 AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QG 361
HK G+ VAW D L++AS DKT K+WD+ + + + L G+ + C + Q
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGH--SNYVFCCNFNPQS 122
Query: 362 DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
+ +++ S + DV ++ + H+ P++A+ + D + + S+DG W+
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/297 (19%), Positives = 122/297 (41%), Gaps = 13/297 (4%)
Query: 43 IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG 102
+ GH K ++++ SP+ + + S D I W A T+ + G V
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 103 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 162
++ ++ I ++ + HS V ++P I SG VRIWD
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE-ISGQSKP 221
+ + H P+ + ++ D ++V + ++ + +G + I + P
Sbjct: 142 GKCLKTLPAHS--DPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 222 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH--SRFVQAVRYSPSGSHFAS 279
++ F P+ + I+ + DNT+ +++ K T H ++ +S +G +
Sbjct: 198 VSFVKFSPNGKY-ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 280 AGF-DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS--GDKTCKLW 333
+G D V++++ + ++V +L H V + A P + +A+ DKT KL+
Sbjct: 257 SGSEDNLVYIWNLQTKEIVQKL--QGHTDVVISTACHPTENIIASAALENDKTIKLY 311
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 100/255 (39%), Gaps = 11/255 (4%)
Query: 41 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDP 100
+ I GH I+ +A S D + + S D + W+ + TL + +P
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 120
Query: 101 KGKNFLYTNG--NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 158
+ N + + SV I +++ HS V+ ++ G I S G RIW
Sbjct: 121 QS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 159 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ 218
DT + + LK P+ + +SP+ + ++ + ++ G + +G
Sbjct: 180 DTASGQ-CLKTLIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 219 --SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH 276
K +F + I++GSEDN + ++ + Q H+ V + P+ +
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 277 FASAGF--DGKVFLY 289
ASA D + LY
Sbjct: 297 IASAALENDKTIKLY 311
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 104/218 (47%), Gaps = 12/218 (5%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 72
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
D+AWS D+ +V + + ++ +G + + G S + C+F P I++GS
Sbjct: 73 DVAWSSDSNLLVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 129
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
D ++ +++ K T HS V AV ++ GS S+ +DG ++D AS +
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWD 334
L NP V V + P+G +L A+ D T KLWD
Sbjct: 190 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 87/179 (48%), Gaps = 14/179 (7%)
Query: 247 FEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNP 303
F P + K T H++ V +V++SP+G AS+ D + + YDG +S
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS----- 65
Query: 304 AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QG 361
HK G+ VAW D L++AS DKT K+WD+ + + + L G+ + C + Q
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGH--SNYVFCCNFNPQS 122
Query: 362 DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
+ +++ S + DV ++ + H+ P++A+ + D + + S+DG W+
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/296 (19%), Positives = 121/296 (40%), Gaps = 13/296 (4%)
Query: 43 IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG 102
+ GH K ++++ SP+ + + S D I W A T+ + G V
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 103 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 162
++ ++ I ++ + HS V ++P I SG VRIWD
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE-ISGQSKP 221
+ + H P+ + ++ D ++V + ++ + +G + I + P
Sbjct: 142 GKCLKTLPAHS--DPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 222 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH--SRFVQAVRYSPSGSHFAS 279
++ F P+ + I+ + DNT+ +++ K T H ++ +S +G +
Sbjct: 198 VSFVKFSPNGKY-ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 280 AGF-DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS--GDKTCKL 332
+G D V++++ + ++V +L H V + A P + +A+ DKT KL
Sbjct: 257 SGSEDNLVYIWNLQTKEIVQKL--QGHTDVVISTACHPTENIIASAALENDKTIKL 310
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 97/247 (39%), Gaps = 9/247 (3%)
Query: 41 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDP 100
+ I GH I+ +A S D + + S D + W+ + TL + +P
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 120
Query: 101 KGKNFLYTNG--NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 158
+ N + + SV I +++ HS V+ ++ G I S G RIW
Sbjct: 121 QS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 159 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ 218
DT + + LK P+ + +SP+ + ++ + ++ G + +G
Sbjct: 180 DTASGQ-CLKTLIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 219 --SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH 276
K +F + I++GSEDN + ++ + Q H+ V + P+ +
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 277 FASAGFD 283
ASA +
Sbjct: 297 IASAALE 303
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 141/313 (45%), Gaps = 25/313 (7%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 36 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 93
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
D+AWS D+ +V + ++ ++ +G + + G S + C+F P I++GS
Sbjct: 94 DVAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 150
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
D ++ +++ K T HS V AV ++ GS S+ +DG ++D AS +
Sbjct: 151 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 210
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVS 356
L NP V V + P+G +L A+ D T KLWD + + G++ E
Sbjct: 211 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKY--- 262
Query: 357 CLWQ------GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410
C++ G ++++ S + ++ ++ ++GH + + A P + +
Sbjct: 263 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASA 321
Query: 411 S--HDGFITRWNA 421
+ +D I W +
Sbjct: 322 ALENDKTIKLWKS 334
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 16/177 (9%)
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 306
P + K T H++ V +V++SP+G AS+ D + + YDG +S HK
Sbjct: 35 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 89
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW---QGDY 363
G+ VAW D L++AS DKT K+WD+ + + + L G+ V C Q +
Sbjct: 90 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHS---NYVFCCNFNPQSNL 145
Query: 364 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
+++ S + DV ++ + H+ P++A+ + D + + S+DG W+
Sbjct: 146 IVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 201
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 122/297 (41%), Gaps = 13/297 (4%)
Query: 43 IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG 102
+ GH K ++++ SP+ + + S D I W A T+ + G V
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 103 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 162
++ ++ I ++ + HS V ++P I SG VRIWD
Sbjct: 103 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 162
Query: 163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE-ISGQSKP 221
+ + H P+ + ++ D ++V + ++ + +G + I + P
Sbjct: 163 GKCLKTLPAH--SDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 218
Query: 222 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH--SRFVQAVRYSPSGSHFAS 279
++ F P+ + I+ + DNT+ +++ K T H ++ +S +G +
Sbjct: 219 VSFVKFSPNGKY-ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 277
Query: 280 AGF-DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS--GDKTCKLW 333
+G D V++++ + ++V +L H V + A P + +A+ DKT KLW
Sbjct: 278 SGSEDNLVYIWNLQTKEIVQKL--QGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 98/248 (39%), Gaps = 11/248 (4%)
Query: 41 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDP 100
+ I GH I+ +A S D + + S D + W+ + TL + +P
Sbjct: 83 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 141
Query: 101 KGKNFLYTNG--NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 158
+ N + + SV I +++ HS V+ ++ G I S G RIW
Sbjct: 142 QS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 200
Query: 159 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ 218
DT + + LK P+ + +SP+ + ++ + ++ G + +G
Sbjct: 201 DTASGQ-CLKTLIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGH 257
Query: 219 SKPINSC---DFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGS 275
K C +F + I++GSEDN + ++ + Q H+ V + P+ +
Sbjct: 258 -KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 316
Query: 276 HFASAGFD 283
ASA +
Sbjct: 317 IIASAALE 324
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 141/313 (45%), Gaps = 25/313 (7%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 34 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 91
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
D+AWS D+ +V + ++ ++ +G + + G S + C+F P I++GS
Sbjct: 92 DVAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 148
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
D ++ +++ K T HS V AV ++ GS S+ +DG ++D AS +
Sbjct: 149 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 208
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVS 356
L NP V V + P+G +L A+ D T KLWD + + G++ E
Sbjct: 209 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKY--- 260
Query: 357 CLWQ------GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410
C++ G ++++ S + ++ ++ ++GH + + A P + +
Sbjct: 261 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASA 319
Query: 411 S--HDGFITRWNA 421
+ +D I W +
Sbjct: 320 ALENDKTIKLWKS 332
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 16/177 (9%)
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 306
P + K T H++ V +V++SP+G AS+ D + + YDG +S HK
Sbjct: 33 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 87
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW---QGDY 363
G+ VAW D L++AS DKT K+WD+ + + + L G+ V C Q +
Sbjct: 88 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHS---NYVFCCNFNPQSNL 143
Query: 364 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
+++ S + DV ++ + H+ P++A+ + D + + S+DG W+
Sbjct: 144 IVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 122/297 (41%), Gaps = 13/297 (4%)
Query: 43 IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG 102
+ GH K ++++ SP+ + + S D I W A T+ + G V
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 103 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 162
++ ++ I ++ + HS V ++P I SG VRIWD
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 160
Query: 163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE-ISGQSKP 221
+ + H P+ + ++ D ++V + ++ + +G + I + P
Sbjct: 161 GKCLKTLPAH--SDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216
Query: 222 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH--SRFVQAVRYSPSGSHFAS 279
++ F P+ + I+ + DNT+ +++ K T H ++ +S +G +
Sbjct: 217 VSFVKFSPNGKY-ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 275
Query: 280 AGF-DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS--GDKTCKLW 333
+G D V++++ + ++V +L H V + A P + +A+ DKT KLW
Sbjct: 276 SGSEDNLVYIWNLQTKEIVQKL--QGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 97/247 (39%), Gaps = 9/247 (3%)
Query: 41 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDP 100
+ I GH I+ +A S D + + S D + W+ + TL + +P
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 139
Query: 101 KGKNFLYTNG--NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 158
+ N + + SV I +++ HS V+ ++ G I S G RIW
Sbjct: 140 QS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 159 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ 218
DT + + LK P+ + +SP+ + ++ + ++ G + +G
Sbjct: 199 DTASGQ-CLKTLIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGH 255
Query: 219 --SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH 276
K +F + I++GSEDN + ++ + Q H+ V + P+ +
Sbjct: 256 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 315
Query: 277 FASAGFD 283
ASA +
Sbjct: 316 IASAALE 322
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 66/160 (41%), Gaps = 26/160 (16%)
Query: 14 WQGDYLLTVSLSG--FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFI 71
W D L VS S + DV++ ++ +KGH+ + +P + +GS D +
Sbjct: 95 WSSDSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 153
Query: 72 TRWNAKTEYIFATLP---------RTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNI---E 119
W+ KT TLP R +++ G ++ + ++ + +
Sbjct: 154 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 213
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 159
NP +S + K+SP+G YI + + +++WD
Sbjct: 214 NPPVSFV-----------KFSPNGKYILAATLDNTLKLWD 242
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 140/313 (44%), Gaps = 25/313 (7%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
N A+ H+ AV+ K+SP+G ++A+ ++IW + + H +G I
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLG--IS 72
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
D+AWS D+ +V + + ++ +G + + G S + C+F P I++GS
Sbjct: 73 DVAWSSDSNLLVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 129
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
D ++ +++ K T HS V AV ++ GS S+ +DG ++D AS +
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVS 356
L NP V V + P+G +L A+ D T KLWD + + G++ E
Sbjct: 190 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKY--- 241
Query: 357 CLWQ------GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410
C++ G ++++ S + ++ ++ ++GH + + A P + +
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASA 300
Query: 411 S--HDGFITRWNA 421
+ +D I W +
Sbjct: 301 ALENDKTIKLWKS 313
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 87/179 (48%), Gaps = 14/179 (7%)
Query: 247 FEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNP 303
F P + K T H++ V +V++SP+G A++ D + + YDG +S
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTIS----- 65
Query: 304 AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QG 361
HK G+ VAW D L++AS DKT K+WD+ + + + L G+ + C + Q
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGH--SNYVFCCNFNPQS 122
Query: 362 DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
+ +++ S + DV ++ + H+ P++A+ + D + + S+DG W+
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 121/297 (40%), Gaps = 13/297 (4%)
Query: 43 IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG 102
+ GH K ++++ SP+ + S D I W A T+ + G V
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 103 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 162
++ ++ I ++ + HS V ++P I SG VRIWD
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE-ISGQSKP 221
+ + H P+ + ++ D ++V + ++ + +G + I + P
Sbjct: 142 GKCLKTLPAHS--DPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 222 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH--SRFVQAVRYSPSGSHFAS 279
++ F P+ + I+ + DNT+ +++ K T H ++ +S +G +
Sbjct: 198 VSFVKFSPNGKY-ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 280 AGF-DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS--GDKTCKLW 333
+G D V++++ + ++V +L H V + A P + +A+ DKT KLW
Sbjct: 257 SGSEDNLVYIWNLQTKEIVQKL--QGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 97/247 (39%), Gaps = 9/247 (3%)
Query: 41 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDP 100
+ I GH I+ +A S D + + S D + W+ + TL + +P
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 120
Query: 101 KGKNFLYTNG--NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 158
+ N + + SV I +++ HS V+ ++ G I S G RIW
Sbjct: 121 QS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 159 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ 218
DT + + LK P+ + +SP+ + ++ + ++ G + +G
Sbjct: 180 DTASGQ-CLKTLIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 219 --SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH 276
K +F + I++GSEDN + ++ + Q H+ V + P+ +
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 277 FASAGFD 283
ASA +
Sbjct: 297 IASAALE 303
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 100/208 (48%), Gaps = 12/208 (5%)
Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 189
H+ AV+ K+SP+G ++AS ++IW + + H +G I D+AWS D+
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSNL 82
Query: 190 MVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEG 249
+V + + ++ +G + + G S + C+F P I++GS D ++ +++
Sbjct: 83 LVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDV 139
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL---GNPAHK 306
T HS V AV ++ GS S+ +DG ++D AS + L NP
Sbjct: 140 KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-- 197
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWD 334
V V + P+G +L A+ D T KLWD
Sbjct: 198 --VSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 85/176 (48%), Gaps = 14/176 (7%)
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 306
P + T H++ V +V++SP+G AS+ D + + YDG +S HK
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 68
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QGDYL 364
G+ VAW D L++AS DKT K+WD+ + + + L G+ + C + Q + +
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHS--NYVFCCNFNPQSNLI 125
Query: 365 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
++ S + DV ++ + H+ P++A+ + D + + S+DG W+
Sbjct: 126 VSGSFDESVRIWDVKT-GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 121/297 (40%), Gaps = 13/297 (4%)
Query: 43 IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG 102
+ GH K ++++ SP+ + + S D I W A T+ + G V
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 103 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 162
++ ++ I ++ + HS V ++P I SG VRIWD
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-- 139
Query: 163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE-ISGQSKP 221
K + P+ + ++ D ++V + ++ + +G + I + P
Sbjct: 140 KTGMCLKTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 222 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH--SRFVQAVRYSPSGSHFAS 279
++ F P+ + I+ + DNT+ +++ K T H ++ +S +G +
Sbjct: 198 VSFVKFSPNGKY-ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 280 AGF-DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS--GDKTCKLW 333
+G D V++++ + ++V +L H V + A P + +A+ DKT KLW
Sbjct: 257 SGSEDNMVYIWNLQTKEIVQKL--QGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 97/247 (39%), Gaps = 9/247 (3%)
Query: 41 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDP 100
+ I GH I+ +A S D + + S D + W+ + TL + +P
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 120
Query: 101 KGKNFLYTNG--NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 158
+ N + + SV I +++ HS V+ ++ G I S G RIW
Sbjct: 121 QS-NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 159 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ 218
DT + + LK P+ + +SP+ + ++ + ++ G + +G
Sbjct: 180 DTASGQ-CLKTLIDDDNPPVSFVKFSPNGKY--ILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 219 --SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH 276
K +F + I++GSEDN + ++ + Q H+ V + P+ +
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 277 FASAGFD 283
ASA +
Sbjct: 297 IASAALE 303
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 99/208 (47%), Gaps = 12/208 (5%)
Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 189
H+ AV+ K+SP+G ++AS ++IW + + H +G I D+AWS D+
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSNL 82
Query: 190 MVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEG 249
+V + + ++ +G + + G S + C+F P I++GS D ++ +++
Sbjct: 83 LVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDV 139
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL---GNPAHK 306
T HS V AV ++ GS S+ +DG ++D AS + L NP
Sbjct: 140 KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-- 197
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWD 334
V V + P+G +L A+ D KLWD
Sbjct: 198 --VSFVKFSPNGKYILAATLDNDLKLWD 223
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 84/177 (47%), Gaps = 16/177 (9%)
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 306
P + T H++ V +V++SP+G AS+ D + + YDG +S HK
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 68
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW---QGDY 363
G+ VAW D L++AS DKT K+WD+ + + + L G+ V C Q +
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHS---NYVFCCNFNPQSNL 124
Query: 364 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
+++ S + DV ++ + H+ P++A+ + D + + S+DG W+
Sbjct: 125 IVSGSFDESVRIWDVKT-GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/297 (19%), Positives = 120/297 (40%), Gaps = 13/297 (4%)
Query: 43 IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG 102
+ GH K ++++ SP+ + + S D I W A T+ + G V
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 103 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 162
++ ++ I ++ + HS V ++P I SG VRIWD
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-- 139
Query: 163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE-ISGQSKP 221
K + P+ + ++ D ++V + ++ + +G + I + P
Sbjct: 140 KTGMCLKTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 222 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH--SRFVQAVRYSPSGSHFAS 279
++ F P+ + I+ + DN + +++ K T H ++ +S +G +
Sbjct: 198 VSFVKFSPNGKY-ILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 280 AGF-DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS--GDKTCKLW 333
+G D V++++ + ++V +L H V + A P + +A+ DKT KLW
Sbjct: 257 SGSEDNMVYIWNLQTKEIVQKL--QGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 97/247 (39%), Gaps = 9/247 (3%)
Query: 41 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDP 100
+ I GH I+ +A S D + + S D + W+ + TL + +P
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 120
Query: 101 KGKNFLYTNG--NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 158
+ N + + SV I +++ HS V+ ++ G I S G RIW
Sbjct: 121 QS-NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 159 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ 218
DT + + LK P+ + +SP+ + ++ + ++ G + +G
Sbjct: 180 DTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDL--KLWDYSKGKCLKTYTGH 236
Query: 219 --SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH 276
K +F + I++GSEDN + ++ + Q H+ V + P+ +
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 277 FASAGFD 283
ASA +
Sbjct: 297 IASAALE 303
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 89/409 (21%), Positives = 159/409 (38%), Gaps = 55/409 (13%)
Query: 43 IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG 102
IK H + A S D + T S D + W++ T + T +
Sbjct: 660 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 103 KNFLYTNGNSVIIR--NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD- 159
L T N ++ ++ + H+ +VN ++SP +AS G +R+WD
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Query: 160 -------TVN-KEHILKNEFHP--IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG 209
++N K L +E P + +K +WS D +++V + + V + +
Sbjct: 780 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK-----VLLFDIH 834
Query: 210 TS--VGEI-SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK-QEHSRFV 265
TS + EI +G I CDF P +I S+ + K+ + H +V
Sbjct: 835 TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ--YCVELWNIDSRLKVADCRGHLSWV 892
Query: 266 QAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS 325
V +SP GS F +A D + +++ V + K + V ++ + T +L
Sbjct: 893 HGVMFSPDGSSFLTASDDQTIRVWETKK---VCKNSAIVLKQEI-DVVFQENETMVLAVD 948
Query: 326 GDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPI 385
+ +L I K+ ++L + QVSC LS + Y+ + I
Sbjct: 949 NIRGLQL--IAGKTGQIDYL-----PEAQVSC---------CCLSPHLEYVAFGDEDGAI 992
Query: 386 RVIK-----------GHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
++I+ GH K + + + D T+ + S D I WN +T
Sbjct: 993 KIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1041
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 125/305 (40%), Gaps = 18/305 (5%)
Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 189
H+ AV A +S G IAS ++++ E +L + H + A+S D+
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE--DEVLCCAFSSDDSY 678
Query: 190 MVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDF-KPSRPFRIITGSEDNTIAVFE 248
+ ++ ++ S TG V S+ +N C F S + TGS D + +++
Sbjct: 679 IATCSADKKV--KIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 736
Query: 249 GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD-----------LV 297
+ + T H+ V R+SP AS DG + L+D SA+ L
Sbjct: 737 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLS 796
Query: 298 SELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSC 357
SE + V +W DG +++ A+ +K L+DI T ++E G+ Q
Sbjct: 797 SEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQYCD- 854
Query: 358 LWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFIT 417
D+L ++LS + L + + +GH + + SPD + T S D I
Sbjct: 855 FSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIR 914
Query: 418 RWNAK 422
W K
Sbjct: 915 VWETK 919
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 255 KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW 314
++ + H+ V +S G AS G D + ++ + + + ++ AH+ V A+
Sbjct: 615 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI--KAHEDEVLCCAF 672
Query: 315 KPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW---QGDYLLTVSLSG 371
D + + T S DK K+WD SA + + +QV+C + ++LL + S
Sbjct: 673 SSDDSYIATCSADKKVKIWD----SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN 728
Query: 372 --FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
F+ D+N + GH + SPD + + S DG + W+ ++
Sbjct: 729 DFFLKLWDLNQKECR-NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 781
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 93/423 (21%), Positives = 153/423 (36%), Gaps = 83/423 (19%)
Query: 17 DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA 76
D+L ++LS + L + + +GH + + SPD + T S D I W
Sbjct: 859 DHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET 918
Query: 77 KTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVI-----IRNIENPA--ISDIYTE 129
K + + IVL + + ++ +++ IR ++ A I
Sbjct: 919 K---------KVCKNSAIVLKQEI---DVVFQENETMVLAVDNIRGLQLIAGKTGQIDYL 966
Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 189
V+ SP Y+A GD G ++I I P N R
Sbjct: 967 PEAQVSCCCLSPHLEYVAFGDEDGAIKI----------------IELP---------NNR 1001
Query: 190 MVVVGEGRER-FGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE 248
+ G G ++ H+ + G + +I+ SED+ I V+
Sbjct: 1002 VFSSGVGHKKAVRHIQFTADGKT-----------------------LISSSEDSVIQVWN 1038
Query: 249 GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGG 308
+ Q H V+ R S S FDG V +++ + + E H+G
Sbjct: 1039 WQTGDYVFL-QAHQETVKDFRL-LQDSRLLSWSFDGTVKVWNVITGRI--ERDFTCHQGT 1094
Query: 309 VYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVS 368
V + A D T+ + S DKT K+W + S + E N L G L T
Sbjct: 1095 VLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSL-DGILLATGD 1153
Query: 369 LSGFISYLDVNN-----PSTPIRVIKG---HNKPITALALSPDRGTVFTGSHDGFITRWN 420
+G I +V++ PI V +G H +T + SPD T+ + G++ WN
Sbjct: 1154 DNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWN 1211
Query: 421 AKT 423
T
Sbjct: 1212 VAT 1214
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 95/251 (37%), Gaps = 77/251 (30%)
Query: 7 DQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIK-----------GHNKPITALAL 55
+ QVSC LS + Y+ + I++I+ GH K + +
Sbjct: 968 EAQVSC---------CCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQF 1018
Query: 56 SPDRGTVFTGSHDGFITRWNAKT-EYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVI 114
+ D T+ + S D I WN +T +Y+F + + L D + ++ + +V
Sbjct: 1019 TADGKTLISSSEDSVIQVWNWQTGDYVFLQ-AHQETVKDFRLLQDSRLLSWSF--DGTVK 1075
Query: 115 IRNIENPAISDIYTEH-----SCA------------------------------------ 133
+ N+ I +T H SCA
Sbjct: 1076 VWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNG 1135
Query: 134 -VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPI---------GGPIKDIAW 183
V + +S G +A+GD +G++RIW+ + + L + PI GG + D+ +
Sbjct: 1136 CVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ--LLHSCAPISVEEGTATHGGWVTDVCF 1193
Query: 184 SPDNQRMVVVG 194
SPD++ +V G
Sbjct: 1194 SPDSKTLVSAG 1204
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 89/409 (21%), Positives = 159/409 (38%), Gaps = 55/409 (13%)
Query: 43 IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG 102
IK H + A S D + T S D + W++ T + T +
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 103 KNFLYTNGNSVIIR--NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD- 159
L T N ++ ++ + H+ +VN ++SP +AS G +R+WD
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Query: 160 -------TVN-KEHILKNEFHP--IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG 209
++N K L +E P + +K +WS D +++V + + V + +
Sbjct: 773 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK-----VLLFDIH 827
Query: 210 TS--VGEI-SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK-QEHSRFV 265
TS + EI +G I CDF P +I S+ + K+ + H +V
Sbjct: 828 TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ--YCVELWNIDSRLKVADCRGHLSWV 885
Query: 266 QAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS 325
V +SP GS F +A D + +++ V + K + V ++ + T +L
Sbjct: 886 HGVMFSPDGSSFLTASDDQTIRVWETKK---VCKNSAIVLKQEI-DVVFQENETMVLAVD 941
Query: 326 GDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPI 385
+ +L I K+ ++L + QVSC LS + Y+ + I
Sbjct: 942 NIRGLQL--IAGKTGQIDYL-----PEAQVSC---------CCLSPHLEYVAFGDEDGAI 985
Query: 386 RVIK-----------GHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
++I+ GH K + + + D T+ + S D I WN +T
Sbjct: 986 KIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1034
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 125/305 (40%), Gaps = 18/305 (5%)
Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 189
H+ AV A +S G IAS ++++ E +L + H + A+S D+
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE--DEVLCCAFSSDDSY 671
Query: 190 MVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDF-KPSRPFRIITGSEDNTIAVFE 248
+ ++ ++ S TG V S+ +N C F S + TGS D + +++
Sbjct: 672 IATCSADKKV--KIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 729
Query: 249 GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD-----------LV 297
+ + T H+ V R+SP AS DG + L+D SA+ L
Sbjct: 730 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLS 789
Query: 298 SELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSC 357
SE + V +W DG +++ A+ +K L+DI T ++E G+ Q
Sbjct: 790 SEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQYCD- 847
Query: 358 LWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFIT 417
D+L ++LS + L + + +GH + + SPD + T S D I
Sbjct: 848 FSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIR 907
Query: 418 RWNAK 422
W K
Sbjct: 908 VWETK 912
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 255 KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW 314
++ + H+ V +S G AS G D + ++ + + + ++ AH+ V A+
Sbjct: 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI--KAHEDEVLCCAF 665
Query: 315 KPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW---QGDYLLTVSLSG 371
D + + T S DK K+WD SA + + +QV+C + ++LL + S
Sbjct: 666 SSDDSYIATCSADKKVKIWD----SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN 721
Query: 372 --FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
F+ D+N + GH + SPD + + S DG + W+ ++
Sbjct: 722 DFFLKLWDLNQKECR-NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 774
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 93/423 (21%), Positives = 153/423 (36%), Gaps = 83/423 (19%)
Query: 17 DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA 76
D+L ++LS + L + + +GH + + SPD + T S D I W
Sbjct: 852 DHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET 911
Query: 77 KTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVI-----IRNIENPA--ISDIYTE 129
K + + IVL + + ++ +++ IR ++ A I
Sbjct: 912 K---------KVCKNSAIVLKQEI---DVVFQENETMVLAVDNIRGLQLIAGKTGQIDYL 959
Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 189
V+ SP Y+A GD G ++I I P N R
Sbjct: 960 PEAQVSCCCLSPHLEYVAFGDEDGAIKI----------------IELP---------NNR 994
Query: 190 MVVVGEGRER-FGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE 248
+ G G ++ H+ + G + +I+ SED+ I V+
Sbjct: 995 VFSSGVGHKKAVRHIQFTADGKT-----------------------LISSSEDSVIQVWN 1031
Query: 249 GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGG 308
+ Q H V+ R S S FDG V +++ + + E H+G
Sbjct: 1032 WQTGDYVFL-QAHQETVKDFRL-LQDSRLLSWSFDGTVKVWNVITGRI--ERDFTCHQGT 1087
Query: 309 VYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVS 368
V + A D T+ + S DKT K+W + S + E N L G L T
Sbjct: 1088 VLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSL-DGILLATGD 1146
Query: 369 LSGFISYLDVNN-----PSTPIRVIKG---HNKPITALALSPDRGTVFTGSHDGFITRWN 420
+G I +V++ PI V +G H +T + SPD T+ + G++ WN
Sbjct: 1147 DNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWN 1204
Query: 421 AKT 423
T
Sbjct: 1205 VAT 1207
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 95/251 (37%), Gaps = 77/251 (30%)
Query: 7 DQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIK-----------GHNKPITALAL 55
+ QVSC LS + Y+ + I++I+ GH K + +
Sbjct: 961 EAQVSC---------CCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQF 1011
Query: 56 SPDRGTVFTGSHDGFITRWNAKT-EYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVI 114
+ D T+ + S D I WN +T +Y+F + + L D + ++ + +V
Sbjct: 1012 TADGKTLISSSEDSVIQVWNWQTGDYVFLQ-AHQETVKDFRLLQDSRLLSWSF--DGTVK 1068
Query: 115 IRNIENPAISDIYTEH-----SCA------------------------------------ 133
+ N+ I +T H SCA
Sbjct: 1069 VWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNG 1128
Query: 134 -VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPI---------GGPIKDIAW 183
V + +S G +A+GD +G++RIW+ + + L + PI GG + D+ +
Sbjct: 1129 CVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ--LLHSCAPISVEEGTATHGGWVTDVCF 1186
Query: 184 SPDNQRMVVVG 194
SPD++ +V G
Sbjct: 1187 SPDSKTLVSAG 1197
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/398 (21%), Positives = 156/398 (39%), Gaps = 39/398 (9%)
Query: 43 IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG 102
IK H + A S D + T S D + WN+ T + T +
Sbjct: 659 IKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSH 718
Query: 103 KNFLYTNGNSVIIR--NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDT 160
L T + ++ ++ + H+ +VN ++SP +AS G +++WD
Sbjct: 719 HLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDA 778
Query: 161 VN----KEHILKNEFHPIGGPIKDI-------AWSPDNQRMVVVGEGRERFGHVFMSETG 209
+ K +K F + P +D+ +WS D R++V + + +F+ +
Sbjct: 779 TSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNK-----IFLFDIH 833
Query: 210 TS--VGEI-SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQ 266
TS +GEI +G I CDF P ++ S+ + ++ + H +V
Sbjct: 834 TSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQ-YCVELWNTDSRSKVADCRGHLSWVH 892
Query: 267 AVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASG 326
V +SP GS F ++ D + L++ S + V+ +++ +
Sbjct: 893 GVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVF------QENEVMVLAV 946
Query: 327 DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSL---SGFISYLD-VNNPS 382
D +L I ++ ++L + QVSC +L ++ +G I L+ VNN
Sbjct: 947 DHIRRLQLINGRTGQIDYLT-----EAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRI 1001
Query: 383 TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
R H K + + + D T+ + S D I WN
Sbjct: 1002 FQSRF--QHKKTVWHIQFTADEKTLISSSDDAEIQVWN 1037
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 127/305 (41%), Gaps = 18/305 (5%)
Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 189
H+ AV A +S G IAS ++++ E +L+ + H + A+S D++
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHE--DEVLCCAFSTDDRF 677
Query: 190 MVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDF-KPSRPFRIITGSEDNTIAVFE 248
+ ++ ++ S TG V S+ +N C F S + TGS D + +++
Sbjct: 678 IATCSVDKK--VKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWD 735
Query: 249 GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD---------LVSE 299
+ + T H+ V R+SP AS DG + L+D SA+
Sbjct: 736 LNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLN 795
Query: 300 LGNPAHKGGVY--AVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSC 357
L +P V +W DG +++ A+ +K L+DI T + E G+ Q
Sbjct: 796 LEDPQEDMEVIVKCCSWSADGARIMVAAKNKI-FLFDIHTSGLLGEIHTGHHSTIQYCDF 854
Query: 358 LWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFIT 417
Q ++L V+LS + L + + + +GH + + SPD + T S D I
Sbjct: 855 SPQ-NHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIR 913
Query: 418 RWNAK 422
W K
Sbjct: 914 LWETK 918
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 81/469 (17%), Positives = 158/469 (33%), Gaps = 94/469 (20%)
Query: 19 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 78
L T S F+ D+N + GH + SPD + + S DG + W+A +
Sbjct: 722 LATGSSDCFLKLWDLNQKECR-NTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATS 780
Query: 79 ---------EYIFATLPRTQRGQPIVLGG---DPKGKNFLYTNGNSVIIRNIENPAI-SD 125
+ F L Q +++ G + N + + +I + +
Sbjct: 781 ANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGE 840
Query: 126 IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP 185
I+T H + +SP V +W+T ++ + H + + +SP
Sbjct: 841 IHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHL--SWVHGVMFSP 898
Query: 186 D-----------------------------NQRMVVVGEGRERFGHVFMSETGTSVGEIS 216
D Q + VV + E V + + I+
Sbjct: 899 DGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVM--VLAVDHIRRLQLIN 956
Query: 217 GQSKPIN--------SCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAV 268
G++ I+ C P + I G E+ I + E + ++ +H + V +
Sbjct: 957 GRTGQIDYLTEAQVSCCCLSPHLQY-IAFGDENGAIEILELVNNRIFQSRFQHKKTVWHI 1015
Query: 269 RYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK 328
+++ S+ D ++ +++ + G+ + ++LL+ S D
Sbjct: 1016 QFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLK----NSRLLSWSFDG 1071
Query: 329 TCKLWDIETKSAVSEFLMG----------------NQVEDQQVSCLWQGDYLLTVSLSGF 372
T K+W+I T + +F+ + + + +W D LL
Sbjct: 1072 TVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLL------- 1124
Query: 373 ISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA 421
P+ ++GHN + A S D + TG +G I WN
Sbjct: 1125 -----------PLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNV 1162
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 76/383 (19%), Positives = 145/383 (37%), Gaps = 76/383 (19%)
Query: 17 DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA 76
++L V+LS + L + + + +GH + + SPD + T S D I W
Sbjct: 858 NHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWET 917
Query: 77 KTEYIFATLPRTQR-------GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTE 129
K + + Q + +VL D + NG + I + +S
Sbjct: 918 KKVCKNSAVMLKQEVDVVFQENEVMVLAVD-HIRRLQLINGRTGQIDYLTEAQVS----- 971
Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 189
C + SP YIA GD +G + I + VN I ++ F + I ++ D +
Sbjct: 972 -CCCL-----SPHLQYIAFGDENGAIEILELVNNR-IFQSRFQH-KKTVWHIQFTADEKT 1023
Query: 190 MVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF-- 247
++ + E V+ + + + G + + DF+ + R+++ S D T+ V+
Sbjct: 1024 LISSSDDAEI--QVWNWQLDKCIF-LRGHQETVK--DFRLLKNSRLLSWSFDGTVKVWNI 1078
Query: 248 ------------EGPPF---------KFKMTKQE-------------------HSRFVQA 267
+G KF T + H+ V+
Sbjct: 1079 ITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRC 1138
Query: 268 VRYSPSGSHFASAGFDGKVFLYDGASADLV------SELGNPAHKGGVYAVAWKPDGTQL 321
+S + A+ +G++ +++ ++ +L+ SE G H G V + + PDG L
Sbjct: 1139 SAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKML 1198
Query: 322 LTASGDKTCKLWDIETKSAVSEF 344
++A G K W++ T + F
Sbjct: 1199 ISAGG--YIKWWNVVTGESSQTF 1219
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 137/327 (41%), Gaps = 35/327 (10%)
Query: 35 NPSTPI--RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA----KTEYIFATLPRT 88
NP+ + R ++GH+ + +L +P++ + + S DG + WNA KT I P
Sbjct: 52 NPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWV 111
Query: 89 QR------GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSP- 141
GQ + GG + N +S R+ P +S + T H + +Y P
Sbjct: 112 MECAFAPNGQSVACGGLDSACSIF--NLSSQADRDGNMP-VSRVLTGHKGYASSCQYVPD 168
Query: 142 --SGFYIASGDISGKVRIWDTVNKEH--ILKNEFHPIGGPIKDIAWSPD--NQRMVVVGE 195
+ SGD + +WD + I +EF P G ++ S + N M + G
Sbjct: 169 QETRLITGSGDQT--CVLWDVTTGQRISIFGSEF-PSGHTADVLSLSINSLNANMFISGS 225
Query: 196 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP-FKF 254
+ T +V G INS F P R TGS+D T +F+ +
Sbjct: 226 CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGHQL 284
Query: 255 KMTKQEHSR------FVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG--NPAHK 306
++ +E R V +V +S SG + +G +++D A++V LG +H+
Sbjct: 285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHE 344
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLW 333
G + + DG+ L T S DK K+W
Sbjct: 345 GRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 16/222 (7%)
Query: 215 ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG 274
+ G S + S D+ P + + I++ S+D + V+ + + H +V ++P+G
Sbjct: 62 LQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 275 SHFASAGFDGKVFLYDGASADLVSELGN-------PAHKGGVYAVAWKPDG-TQLLTASG 326
A G D +++ +S GN HKG + + PD T+L+T SG
Sbjct: 121 QSVACGGLDSACSIFNLSSQ--ADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG 178
Query: 327 DKTCKLWDIETKSAV----SEFLMGNQVEDQQVSC-LWQGDYLLTVSLSGFISYLDVNNP 381
D+TC LWD+ T + SEF G+ + +S + ++ S + D+
Sbjct: 179 DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT 238
Query: 382 STPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
S +R GH I ++ PD TGS DG ++ +T
Sbjct: 239 SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 24/144 (16%)
Query: 295 DLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQ 354
DLV H G VY++ W P+ +++AS D +W+ L + +
Sbjct: 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNA---------LTSQKTHAIK 105
Query: 355 VSCLWQGDYLL-----TVSLSGFISYLDVNNPST--------PI-RVIKGHNKPITALAL 400
+ C W + +V+ G S + N S+ P+ RV+ GH ++
Sbjct: 106 LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQY 165
Query: 401 SPDRGT-VFTGSHDGFITRWNAKT 423
PD+ T + TGS D W+ T
Sbjct: 166 VPDQETRLITGSGDQTCVLWDVTT 189
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 11/142 (7%)
Query: 28 ISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEY---IFAT 84
+ D+ S +R GH I ++ PD TGS DG ++ +T + ++
Sbjct: 230 VRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR 289
Query: 85 LP-RTQRGQPIV--LGGDPKGKNFL--YTNGNSVIIRNIENPAISDIYT---EHSCAVNV 136
P R PIV + G+ Y+NG+ + + + ++ T H ++
Sbjct: 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC 349
Query: 137 AKYSPSGFYIASGDISGKVRIW 158
S G + +G ++IW
Sbjct: 350 LGLSSDGSALCTGSWDKNLKIW 371
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 121/295 (41%), Gaps = 35/295 (11%)
Query: 128 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN 187
T HS V S G + SG G++R+WD + F + +A+S DN
Sbjct: 427 TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLA--AGVSTRRFVGHTKDVLSVAFSLDN 484
Query: 188 QRMVVVGEGRERFGHVFMSETGTSVGEI-SGQSKPINSCDFKPS--RPFRIITGSEDNTI 244
+++V R + E ++ E G ++ F P+ +P I++ S D T+
Sbjct: 485 RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP-TIVSASWDKTV 543
Query: 245 AVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPA 304
V+ K + T H+ +V V SP GS AS G DG V L+D A + L
Sbjct: 544 KVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL---E 600
Query: 305 HKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYL 364
++A+ + P+ L A+ + K+WD+E+KS V +
Sbjct: 601 ANSVIHALCFSPN-RYWLCAATEHGIKIWDLESKSIVED--------------------- 638
Query: 365 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRW 419
L V L D + P+ R + T+L S D T+F+G DG I W
Sbjct: 639 LKVDLKAEAEKADNSGPAATKRKV----IYCTSLNWSADGSTLFSGYTDGVIRVW 689
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 37/224 (16%)
Query: 215 ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE------------HS 262
++ + PI++ D I++ S D +I ++ K+TK + HS
Sbjct: 385 VTAIATPIDNADI-------IVSASRDKSIILW-------KLTKDDKAYGVAQRRLTGHS 430
Query: 263 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLL 322
FV+ V S G S +DG++ L+D A+ VS H V +VA+ D Q++
Sbjct: 431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAG--VSTRRFVGHTKDVLSVAFSLDNRQIV 488
Query: 323 TASGDKTCKLWDI--ETKSAVSEFLMGNQVEDQQVSCLWQGDYLL--TVSLSGFISYLDV 378
+AS D+T KLW+ E K +SE G + VSC+ L T+ + + + V
Sbjct: 489 SASRDRTIKLWNTLGECKYTISE---GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKV 545
Query: 379 NNPST-PIR-VIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
N S +R + GH ++ +A+SPD +G DG + W+
Sbjct: 546 WNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWD 589
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 77/196 (39%), Gaps = 11/196 (5%)
Query: 5 VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFT 64
VED +S G + L+ S G + D+ + R + GH K + ++A S D + +
Sbjct: 433 VEDVVLSS--DGQFALSGSWDGELRLWDLAAGVSTRRFV-GHTKDVLSVAFSLDNRQIVS 489
Query: 65 GSHDGFITRWN--AKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGN---SVIIRNIE 119
S D I WN + +Y + R + P + + +V + N+
Sbjct: 490 ASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
N + H+ V+ SP G ASG G V +WD + + E + + I
Sbjct: 550 NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV---IH 606
Query: 180 DIAWSPDNQRMVVVGE 195
+ +SP+ + E
Sbjct: 607 ALCFSPNRYWLCAATE 622
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 142/332 (42%), Gaps = 43/332 (12%)
Query: 129 EHSCAVNVAKYSPSGFYIASG-----------DISGKVRIWD--TVNKE-HILKNEFHPI 174
+H+ V K+S G Y+A+G D S R+ D NK+ L P
Sbjct: 62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 175 GGP-IKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPF 233
I+ + +SPD + + E +R ++ E V + G + I S D+ PS
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAE--DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD- 178
Query: 234 RIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSP-SGSHFASAGFDGKVFLYDGA 292
++++GS D T+ +++ + +T V V SP G + A+ D V ++D
Sbjct: 179 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237
Query: 293 SADLVSELGNP-----AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMG 347
+ LV L + HK VY+V + DG +++ S D++ KLW+++ + S+
Sbjct: 238 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 297
Query: 348 NQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPS-----------TPIRVIKGHNKPIT 396
N +V+ + D++L+V+ + Y+ + P+ +++GH +
Sbjct: 298 NS-GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 356
Query: 397 ALA------LSPDRGTVFTGSHDGFITRWNAK 422
++A L P+ TGS D W K
Sbjct: 357 SVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 101/266 (37%), Gaps = 45/266 (16%)
Query: 100 PKGKNFLYTNGNSVIIR--NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRI 157
P GK FL T +IR +IEN I I H + Y PSG + SG VRI
Sbjct: 133 PDGK-FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 191
Query: 158 WDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEI-- 215
WD + L I + +A SP + + + G +R V+ SETG V +
Sbjct: 192 WDLRTGQCSLT---LSIEDGVTTVAVSPGDGKYIAAG-SLDRAVRVWDSETGFLVERLDS 247
Query: 216 -----SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK------------MTK 258
+G + S F +++GS D ++ ++ K +T
Sbjct: 248 ENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 306
Query: 259 QEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP-----AHKGGVYAVA 313
H FV +V + + + S D V +D S GNP H+ V +VA
Sbjct: 307 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS-------GNPLLMLQGHRNSVISVA 359
Query: 314 ------WKPDGTQLLTASGDKTCKLW 333
P+ T SGD ++W
Sbjct: 360 VANGSSLGPEYNVFATGSGDCKARIW 385
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 33/180 (18%), Positives = 64/180 (35%), Gaps = 61/180 (33%)
Query: 260 EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGN----------------P 303
+H+ V V++S G + A+ G + +Y + LV+ L + P
Sbjct: 62 DHTSVVCCVKFSNDGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 120
Query: 304 AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDY 363
+ + +V + PDG L T + D+ ++WDIE +
Sbjct: 121 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI----------------------- 157
Query: 364 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
+ +++GH + I +L P + +GS D + W+ +T
Sbjct: 158 ---------------------VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 45/146 (30%)
Query: 16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 75
G +L T + I D+ N + +++GH + I +L P + +GS D + W+
Sbjct: 135 GKFLATGAEDRLIRIWDIENRKI-VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 193
Query: 76 AKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVN 135
+T G + +IE+ V
Sbjct: 194 LRT-------------------------------GQCSLTLSIED------------GVT 210
Query: 136 VAKYSP-SGFYIASGDISGKVRIWDT 160
SP G YIA+G + VR+WD+
Sbjct: 211 TVAVSPGDGKYIAAGSLDRAVRVWDS 236
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 104/245 (42%), Gaps = 25/245 (10%)
Query: 139 YSPSGFYIASGDISGKVRIWDTVNKEHILK---NEFHPIGGPIKDIAWSPDNQRMVVVGE 195
++P+G +AS ++RIW T I K +E H ++ +AWSP +
Sbjct: 24 WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQ--RTVRKVAWSPCGNYLASASF 81
Query: 196 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF---EGPPF 252
+ V + G + S + PS + T S D ++ V+ E +
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNL-LATCSRDKSVWVWEVDEEDEY 140
Query: 253 KFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAV 312
+ H++ V+ V + PS ASA +D V LY D V H+ V+++
Sbjct: 141 ECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSL 200
Query: 313 AWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQG---DYLLTVSL 369
A+ P G +L + S D+T ++W ++L GN+ Q V+C G + +L
Sbjct: 201 AFDPSGQRLASCSDDRTVRIW--------RQYLPGNE---QGVAC--SGSDPSWKCICTL 247
Query: 370 SGFIS 374
SGF S
Sbjct: 248 SGFHS 252
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 82/209 (39%), Gaps = 8/209 (3%)
Query: 219 SKPINSCDFKPSRPFRIITGSE--DNTIAVF--EGPPFKFKMTKQE-HSRFVQAVRYSPS 273
+ P + C F P + S D I ++ EG + K E H R V+ V +SP
Sbjct: 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC 72
Query: 274 GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLW 333
G++ ASA FD ++ D H+ V +VAW P G L T S DK+ +W
Sbjct: 73 GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW 132
Query: 334 DIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLS---GFISYLDVNNPSTPIRVIKG 390
+++ + + N +W L S S Y + + ++G
Sbjct: 133 EVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEG 192
Query: 391 HNKPITALALSPDRGTVFTGSHDGFITRW 419
H + +LA P + + S D + W
Sbjct: 193 HESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 4/122 (3%)
Query: 303 PAH-KGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLM--GNQVEDQQVSCLW 359
PAH + +AW P GT L + GD+ ++W E S + + ++ G+Q ++V+
Sbjct: 12 PAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP 71
Query: 360 QGDYLLTVSLSGFISYLDVNNPS-TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITR 418
G+YL + S N + ++GH + ++A +P + T S D +
Sbjct: 72 CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWV 131
Query: 419 WN 420
W
Sbjct: 132 WE 133
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 79/223 (35%), Gaps = 27/223 (12%)
Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK-EHILKNEFHPIGGPIKDIAWSPDNQ 188
H V ++PSG +A+ V +W+ + E+ + + +K + W P +
Sbjct: 104 HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163
Query: 189 RMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE 248
+ + + + G + S F PS R+ + S+D T+ ++
Sbjct: 164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ-RLASCSDDRTVRIWR 222
Query: 249 ---------------GPPFKFKMTKQE-HSRFVQAVRYSPSGSHFASAGFDG--KVFLYD 290
P +K T HSR + + + A+A D +VF D
Sbjct: 223 QYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQED 282
Query: 291 GASA------DLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD 327
S L + L + AH V VAW P LL + D
Sbjct: 283 PNSDPQQPTFSLTAHL-HQAHSQDVNCVAWNPKEPGLLASCSD 324
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 114/285 (40%), Gaps = 24/285 (8%)
Query: 146 IASGDISGKVRIWD--TVNKEH--------ILKNEFHPIGGPIKDIAWSPDNQRMVVVGE 195
+ S GK+ IWD T NK H ++ + P G + DN + +
Sbjct: 70 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA--CGGLDN--ICSIYN 125
Query: 196 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK 255
+ R G+V +S E++G + ++ C F +I+T S D T A+++ +
Sbjct: 126 LKTREGNVRVSR------ELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQT 177
Query: 256 MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWK 315
T H+ V ++ +P F S D L+D + H+ + A+ +
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGHESDINAICFF 235
Query: 316 PDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISY 375
P+G T S D TC+L+D+ + + N + + LL F
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295
Query: 376 LDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
+ + V+ GH+ ++ L ++ D V TGS D F+ WN
Sbjct: 296 VWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 68/194 (35%), Gaps = 55/194 (28%)
Query: 235 IITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASA 294
+++ S+D + +++ S +V Y+PSG++ A G D +Y+
Sbjct: 70 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN---- 125
Query: 295 DLVSELGNP------AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGN 348
L + GN A G + D Q++T+SGD TC LWDIET +
Sbjct: 126 -LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT----- 179
Query: 349 QVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVF 408
GH + +L+L+PD
Sbjct: 180 ---------------------------------------FTGHTGDVMSLSLAPDTRLFV 200
Query: 409 TGSHDGFITRWNAK 422
+G+ D W+ +
Sbjct: 201 SGACDASAKLWDVR 214
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 42 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 75
V+ GH+ ++ L ++ D V TGS D F+ WN
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 114/285 (40%), Gaps = 24/285 (8%)
Query: 146 IASGDISGKVRIWD--TVNKEH--------ILKNEFHPIGGPIKDIAWSPDNQRMVVVGE 195
+ S GK+ IWD T NK H ++ + P G + DN + +
Sbjct: 70 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA--CGGLDN--ICSIYN 125
Query: 196 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK 255
+ R G+V +S E++G + ++ C F +I+T S D T A+++ +
Sbjct: 126 LKTREGNVRVSR------ELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQT 177
Query: 256 MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWK 315
T H+ V ++ +P F S D L+D + H+ + A+ +
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGHESDINAICFF 235
Query: 316 PDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISY 375
P+G T S D TC+L+D+ + + N + + LL F
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295
Query: 376 LDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
+ + V+ GH+ ++ L ++ D V TGS D F+ WN
Sbjct: 296 VWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 68/194 (35%), Gaps = 55/194 (28%)
Query: 235 IITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASA 294
+++ S+D + +++ S +V Y+PSG++ A G D +Y+
Sbjct: 70 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN---- 125
Query: 295 DLVSELGNP------AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGN 348
L + GN A G + D Q++T+SGD TC LWDIET +
Sbjct: 126 -LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT----- 179
Query: 349 QVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVF 408
GH + +L+L+PD
Sbjct: 180 ---------------------------------------FTGHTGDVMSLSLAPDTRLFV 200
Query: 409 TGSHDGFITRWNAK 422
+G+ D W+ +
Sbjct: 201 SGACDASAKLWDVR 214
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 42 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 75
V+ GH+ ++ L ++ D V TGS D F+ WN
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 114/285 (40%), Gaps = 24/285 (8%)
Query: 146 IASGDISGKVRIWD--TVNKEH--------ILKNEFHPIGGPIKDIAWSPDNQRMVVVGE 195
+ S GK+ IWD T NK H ++ + P G + DN + +
Sbjct: 81 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA--CGGLDN--ICSIYN 136
Query: 196 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK 255
+ R G+V +S E++G + ++ C F +I+T S D T A+++ +
Sbjct: 137 LKTREGNVRVSR------ELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQT 188
Query: 256 MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWK 315
T H+ V ++ +P F S D L+D + H+ + A+ +
Sbjct: 189 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGHESDINAICFF 246
Query: 316 PDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISY 375
P+G T S D TC+L+D+ + + N + + LL F
Sbjct: 247 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 306
Query: 376 LDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
+ + V+ GH+ ++ L ++ D V TGS D F+ WN
Sbjct: 307 VWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 68/194 (35%), Gaps = 55/194 (28%)
Query: 235 IITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASA 294
+++ S+D + +++ S +V Y+PSG++ A G D +Y+
Sbjct: 81 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN---- 136
Query: 295 DLVSELGNP------AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGN 348
L + GN A G + D Q++T+SGD TC LWDIET +
Sbjct: 137 -LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT----- 190
Query: 349 QVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVF 408
GH + +L+L+PD
Sbjct: 191 ---------------------------------------FTGHTGDVMSLSLAPDTRLFV 211
Query: 409 TGSHDGFITRWNAK 422
+G+ D W+ +
Sbjct: 212 SGACDASAKLWDVR 225
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 42 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 75
V+ GH+ ++ L ++ D V TGS D F+ WN
Sbjct: 318 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 97/202 (48%), Gaps = 13/202 (6%)
Query: 147 ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVV---VGEGRERFGHV 203
AS + +R+WD N + I + P+ +A+SPD+Q + VG+ +
Sbjct: 96 ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT--LAFSPDSQYLATGTHVGKVN-----I 148
Query: 204 FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSR 263
F E+G + + K I S + P + + +G+ D I +F+ K T + H+
Sbjct: 149 FGVESGKKEYSLDTRGKFILSIAYSPDGKY-LASGAIDGIINIFDIATGKLLHTLEGHAM 207
Query: 264 FVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLT 323
++++ +SP +A DG + +YD A+L L H V VA+ PD T ++
Sbjct: 208 PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL--SGHASWVLNVAFCPDDTHFVS 265
Query: 324 ASGDKTCKLWDIETKSAVSEFL 345
+S DK+ K+WD+ T++ V F
Sbjct: 266 SSSDKSVKVWDVGTRTCVHTFF 287
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 131/308 (42%), Gaps = 35/308 (11%)
Query: 44 KGHNKPITALALSPDRG----TVFTGSHDGFITRWNAKTEYIFA--TLPRTQRG------ 91
+ H+ I ++A ++ TV TGS D + W + E + +L Q G
Sbjct: 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDI 88
Query: 92 ---QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIAS 148
PI L+ N I++I+ + D +T +SP Y+A+
Sbjct: 89 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPV-DAWT--------LAFSPDSQYLAT 139
Query: 149 GDISGKVRIW--DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMS 206
G GKV I+ ++ KE+ L G I IA+SPD + + + ++F
Sbjct: 140 GTHVGKVNIFGVESGKKEYSLDTR----GKFILSIAYSPDGKYL--ASGAIDGIINIFDI 193
Query: 207 ETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQ 266
TG + + G + PI S F P ++T S+D I +++ T H+ +V
Sbjct: 194 ATGKLLHTLEGHAMPIRSLTFSPDSQL-LVTASDDGYIKIYDVQHANLAGTLSGHASWVL 252
Query: 267 AVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASG 326
V + P +HF S+ D V ++D + V + H+ V+ V + +G+++++
Sbjct: 253 NVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD--HQDQVWGVKYNGNGSKIVSVGD 310
Query: 327 DKTCKLWD 334
D+ ++D
Sbjct: 311 DQEIHIYD 318
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 8/198 (4%)
Query: 228 KPSRPFRIITGSEDNTIAVFE--GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGK 285
K ++TGS D+ + V++ + + + H V +V S + AS+ D
Sbjct: 44 KKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103
Query: 286 VFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET-KSAVSEF 344
+ L+D + + + A + +A+ PD L T + ++ +E+ K S
Sbjct: 104 IRLWDLENGKQIKSI--DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD 161
Query: 345 LMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDR 404
G + S G YL + ++ G I+ D+ + ++GH PI +L SPD
Sbjct: 162 TRGKFILSIAYSP--DGKYLASGAIDGIINIFDIATGKL-LHTLEGHAMPIRSLTFSPDS 218
Query: 405 GTVFTGSHDGFITRWNAK 422
+ T S DG+I ++ +
Sbjct: 219 QLLVTASDDGYIKIYDVQ 236
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 75
G YL + ++ G I+ D+ + ++GH PI +L SPD + T S DG+I ++
Sbjct: 176 GKYLASGAIDGIINIFDIATGKL-LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYD 234
Query: 76 AKTEYIFATL 85
+ + TL
Sbjct: 235 VQHANLAGTL 244
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 12/167 (7%)
Query: 261 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD--LVSELGNPAHKGGVYAVAWKPDG 318
HS+ V +R++P G H AS G D V ++ A + V H+G V AVAW P
Sbjct: 240 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 299
Query: 319 TQLLTASG---DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFI-S 374
+ +L G D+ ++W++ + + +S +QV S LW Y +S GF +
Sbjct: 300 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV----CSILWSPHYKELISGHGFAQN 355
Query: 375 YLDVNNPSTPIRV--IKGHNKPITALALSPDRGTVFTGSHDGFITRW 419
L + T +V +KGH + +L +SPD TV + + D + W
Sbjct: 356 QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 25/197 (12%)
Query: 224 SCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD 283
+C + PS P RI+ + P + + ++ V +S SG+ A A D
Sbjct: 96 TCRYIPSLPDRIL-----------DAPEIR-------NDYYLNLVDWS-SGNVLAVA-LD 135
Query: 284 GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSE 343
V+L+ +S D++ L + +VAW +G L + +LWD++ + +
Sbjct: 136 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ----K 191
Query: 344 FLMGNQVEDQQVSCLWQGDYLLTV-SLSGFISYLDVNNPSTPIRVIKGHNKPITALALSP 402
L +V L Y+L+ S SG I + DV + + GH++ + L +P
Sbjct: 192 RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 251
Query: 403 DRGTVFTGSHDGFITRW 419
D + +G +D + W
Sbjct: 252 DGRHLASGGNDNLVNVW 268
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 9/166 (5%)
Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE--HILKNEFHPIGGPIKDIAWSPDN 187
HS V +++P G ++ASG V +W + E + F G +K +AW P
Sbjct: 240 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 299
Query: 188 QRMVVVGEG-RERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFR-IITGS--EDNT 243
++ G G +R ++ +G + + S+ C S ++ +I+G N
Sbjct: 300 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ---VCSILWSPHYKELISGHGFAQNQ 356
Query: 244 IAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLY 289
+ +++ P + H+ V ++ SP G+ ASA D + L+
Sbjct: 357 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 11 SCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGF 70
S W L + S SG I + DV + + GH++ + L +PD + +G +D
Sbjct: 205 SLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL 264
Query: 71 ITRW 74
+ W
Sbjct: 265 VNVW 268
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 5 VEDQQVSCLWQGDYLLTVSLSGFI-SYLDVNNPSTPIRV--IKGHNKPITALALSPDRGT 61
Q S LW Y +S GF + L + T +V +KGH + +L +SPD T
Sbjct: 330 AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT 389
Query: 62 VFTGSHDGFITRW 74
V + + D + W
Sbjct: 390 VASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 12/167 (7%)
Query: 261 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD--LVSELGNPAHKGGVYAVAWKPDG 318
HS+ V +R++P G H AS G D V ++ A + V H+G V AVAW P
Sbjct: 229 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 288
Query: 319 TQLLTASG---DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFI-S 374
+ +L G D+ ++W++ + + +S +QV S LW Y +S GF +
Sbjct: 289 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV----CSILWSPHYKELISGHGFAQN 344
Query: 375 YLDVNNPSTPIRV--IKGHNKPITALALSPDRGTVFTGSHDGFITRW 419
L + T +V +KGH + +L +SPD TV + + D + W
Sbjct: 345 QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 25/197 (12%)
Query: 224 SCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD 283
+C + PS P RI+ + P + + ++ V +S SG+ A A D
Sbjct: 85 TCRYIPSLPDRIL-----------DAPEIR-------NDYYLNLVDWS-SGNVLAVA-LD 124
Query: 284 GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSE 343
V+L+ +S D++ L + +VAW +G L + +LWD++ + +
Sbjct: 125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ----K 180
Query: 344 FLMGNQVEDQQVSCLWQGDYLLTV-SLSGFISYLDVNNPSTPIRVIKGHNKPITALALSP 402
L +V L Y+L+ S SG I + DV + + GH++ + L +P
Sbjct: 181 RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 240
Query: 403 DRGTVFTGSHDGFITRW 419
D + +G +D + W
Sbjct: 241 DGRHLASGGNDNLVNVW 257
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 9/166 (5%)
Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE--HILKNEFHPIGGPIKDIAWSPDN 187
HS V +++P G ++ASG V +W + E + F G +K +AW P
Sbjct: 229 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 288
Query: 188 QRMVVVGEG-RERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFR-IITGS--EDNT 243
++ G G +R ++ +G + + S+ C S ++ +I+G N
Sbjct: 289 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ---VCSILWSPHYKELISGHGFAQNQ 345
Query: 244 IAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLY 289
+ +++ P + H+ V ++ SP G+ ASA D + L+
Sbjct: 346 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 11 SCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGF 70
S W L + S SG I + DV + + GH++ + L +PD + +G +D
Sbjct: 194 SLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL 253
Query: 71 ITRW 74
+ W
Sbjct: 254 VNVW 257
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 8 QQVSCLWQGDYLLTVSLSGFI-SYLDVNNPSTPIRV--IKGHNKPITALALSPDRGTVFT 64
Q S LW Y +S GF + L + T +V +KGH + +L +SPD TV +
Sbjct: 322 QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 381
Query: 65 GSHDGFITRW 74
+ D + W
Sbjct: 382 AAADETLRLW 391
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 114/285 (40%), Gaps = 24/285 (8%)
Query: 146 IASGDISGKVRIWD--TVNKEH--------ILKNEFHPIGGPIKDIAWSPDNQRMVVVGE 195
+ S GK+ IWD T NK H ++ + P G + DN + +
Sbjct: 70 LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA--CGGLDN--ICSIYN 125
Query: 196 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK 255
+ R G+V +S E++G + ++ C F +I+T S D T A+++ +
Sbjct: 126 LKTREGNVRVSR------ELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQT 177
Query: 256 MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWK 315
T H+ V ++ +P F S D L+D + H+ + A+ +
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGHESDINAICFF 235
Query: 316 PDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISY 375
P+G T S D TC+L+D+ + + N + + LL F
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295
Query: 376 LDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
+ + V+ GH+ ++ L ++ D V TGS D F+ WN
Sbjct: 296 VWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 68/194 (35%), Gaps = 55/194 (28%)
Query: 235 IITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASA 294
+++ S+D + +++ S +V Y+PSG++ A G D +Y+
Sbjct: 70 LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN---- 125
Query: 295 DLVSELGNP------AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGN 348
L + GN A G + D Q++T+SGD TC LWDIET +
Sbjct: 126 -LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT----- 179
Query: 349 QVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVF 408
GH + +L+L+PD
Sbjct: 180 ---------------------------------------FTGHTGDVMSLSLAPDTRLFV 200
Query: 409 TGSHDGFITRWNAK 422
+G+ D W+ +
Sbjct: 201 SGACDASAKLWDVR 214
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 42 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 75
V+ GH+ ++ L ++ D V TGS D F+ WN
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 114/285 (40%), Gaps = 24/285 (8%)
Query: 146 IASGDISGKVRIWD--TVNKEH--------ILKNEFHPIGGPIKDIAWSPDNQRMVVVGE 195
+ S GK+ IWD T NK H ++ + P G + DN + +
Sbjct: 70 LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA--CGGLDN--ICSIYN 125
Query: 196 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK 255
+ R G+V +S E++G + ++ C F +I+T S D T A+++ +
Sbjct: 126 LKTREGNVRVSR------ELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQT 177
Query: 256 MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWK 315
T H+ V ++ +P F S D L+D + H+ + A+ +
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGHESDINAICFF 235
Query: 316 PDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISY 375
P+G T S D TC+L+D+ + + N + + LL F
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295
Query: 376 LDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
+ + V+ GH+ ++ L ++ D V TGS D F+ WN
Sbjct: 296 VWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 68/194 (35%), Gaps = 55/194 (28%)
Query: 235 IITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASA 294
+++ S+D + +++ S +V Y+PSG++ A G D +Y+
Sbjct: 70 LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN---- 125
Query: 295 DLVSELGNP------AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGN 348
L + GN A G + D Q++T+SGD TC LWDIET +
Sbjct: 126 -LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT----- 179
Query: 349 QVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVF 408
GH + +L+L+PD
Sbjct: 180 ---------------------------------------FTGHTGDVMSLSLAPDTRLFV 200
Query: 409 TGSHDGFITRWNAK 422
+G+ D W+ +
Sbjct: 201 SGACDASAKLWDVR 214
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 42 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 75
V+ GH+ ++ L ++ D V TGS D F+ WN
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/283 (21%), Positives = 123/283 (43%), Gaps = 20/283 (7%)
Query: 142 SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFG 201
G I SG +++W V + L+ GG WS + +++ +R
Sbjct: 128 CGNRIVSGSDDNTLKVWSAVTGK-CLRTLVGHTGG-----VWSSQMRDNIIISGSTDRTL 181
Query: 202 HVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH 261
V+ +ETG + + G + + R +++GS D T+ V++ + H
Sbjct: 182 KVWNAETGECIHTLYGHTSTVRCMHLHEKR---VVSGSRDATLRVWDIETGQCLHVLMGH 238
Query: 262 SRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQL 321
V+ V+Y G S +D V ++D + + L H VY++ + DG +
Sbjct: 239 VAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTL--QGHTNRVYSLQF--DGIHV 292
Query: 322 LTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNP 381
++ S D + ++WD+ET + + L G+Q + + + L++ + + D+
Sbjct: 293 VSGSLDTSIRVWDVETGNCI-HTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTG 349
Query: 382 STPIRVIKGHNKPITAL-ALSPDRGTVFTGSHDGFITRWNAKT 423
++ ++G NK +A+ L ++ V T S DG + W+ KT
Sbjct: 350 QC-LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT 391
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/294 (20%), Positives = 116/294 (39%), Gaps = 23/294 (7%)
Query: 40 IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGD 99
+R + GH + + + + + +GS D + WNA+T TL G +
Sbjct: 152 LRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLY----GHTSTVRCM 205
Query: 100 PKGKNFLYTNGNSVIIR--NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRI 157
+ + + +R +IE + H AV +Y G + SG V++
Sbjct: 206 HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKV 263
Query: 158 WDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISG 217
WD + H + G + +S + VV + V+ ETG + ++G
Sbjct: 264 WDPET-----ETCLHTLQGHTNRV-YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG 317
Query: 218 QSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHF 277
+ + K + +++G+ D+T+ +++ + T Q ++ AV +F
Sbjct: 318 HQSLTSGMELKDN---ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF 374
Query: 278 A-SAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW--KPDGTQLLTASGDK 328
++ DG V L+D + + + L GG V W + T+L+ A G +
Sbjct: 375 VITSSDDGTVKLWDLKTGEFIRNL-VTLESGGSGGVVWRIRASNTKLVCAVGSR 427
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 12/169 (7%)
Query: 261 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD--LVSELGNPAHKGGVYAVAWKPDG 318
HS+ V +R++P G H AS G D V ++ A + V H+G V AVAW P
Sbjct: 149 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 208
Query: 319 TQLLTASG---DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFI-S 374
+ +L G D+ ++W++ + + +S +QV S LW Y +S GF +
Sbjct: 209 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV----CSILWSPHYKELISGHGFAQN 264
Query: 375 YLDVNNPSTPIRV--IKGHNKPITALALSPDRGTVFTGSHDGFITRWNA 421
L + T +V +KGH + +L +SPD TV + + D + W
Sbjct: 265 QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 313
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 25/197 (12%)
Query: 224 SCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD 283
+C + PS P RI+ + P + + ++ V +S SG+ A A D
Sbjct: 5 TCRYIPSLPDRIL-----------DAPEIR-------NDYYLNLVDWS-SGNVLAVA-LD 44
Query: 284 GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSE 343
V+L+ +S D++ L + +VAW +G L + +LWD++ + +
Sbjct: 45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ----K 100
Query: 344 FLMGNQVEDQQVSCLWQGDYLLTV-SLSGFISYLDVNNPSTPIRVIKGHNKPITALALSP 402
L +V L Y+L+ S SG I + DV + + GH++ + L +P
Sbjct: 101 RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160
Query: 403 DRGTVFTGSHDGFITRW 419
D + +G +D + W
Sbjct: 161 DGRHLASGGNDNLVNVW 177
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 9/166 (5%)
Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE--HILKNEFHPIGGPIKDIAWSPDN 187
HS V +++P G ++ASG V +W + E + F G +K +AW P
Sbjct: 149 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 208
Query: 188 QRMVVVGEG-RERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFR-IITGS--EDNT 243
++ G G +R ++ +G + + S+ C S ++ +I+G N
Sbjct: 209 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ---VCSILWSPHYKELISGHGFAQNQ 265
Query: 244 IAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLY 289
+ +++ P + H+ V ++ SP G+ ASA D + L+
Sbjct: 266 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 14 WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITR 73
W L + S SG I + DV + + GH++ + L +PD + +G +D +
Sbjct: 117 WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 176
Query: 74 W 74
W
Sbjct: 177 W 177
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 8 QQVSCLWQGDYLLTVSLSGFI-SYLDVNNPSTPIRV--IKGHNKPITALALSPDRGTVFT 64
Q S LW Y +S GF + L + T +V +KGH + +L +SPD TV +
Sbjct: 242 QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 301
Query: 65 GSHDGFITRWNA 76
+ D + W
Sbjct: 302 AAADETLRLWRC 313
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 120/297 (40%), Gaps = 45/297 (15%)
Query: 146 IASGDISGKVRIWD--TVNKEH--------ILKNEFHPIGGPIKDIAWSPDNQRMV--VV 193
I S GKV +WD T NKEH ++ + P G I DN+ V +
Sbjct: 79 IVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIA--CGGLDNKCSVYPLT 136
Query: 194 GEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK 253
+ E M+ SV + +++C F S +I+T S D T A+++ +
Sbjct: 137 FDKNEN-----MAAKKKSVAM---HTNYLSACSFTNS-DMQILTASGDGTCALWDVESGQ 187
Query: 254 FKMTKQEHSRFVQAVRYSPS--GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYA 311
+ H V + +PS G+ F S G D K ++D S V H+ V +
Sbjct: 188 LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF--ETHESDVNS 245
Query: 312 VAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSG 371
V + P G + S D TC+L+D+ V+ + + + G + SLSG
Sbjct: 246 VRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESII---------FGASSVDFSLSG 296
Query: 372 FISYLDVNN---------PSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRW 419
+ + N+ + + ++ GH ++ L +SPD +GS D + W
Sbjct: 297 RLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 78/187 (41%), Gaps = 19/187 (10%)
Query: 167 LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCD 226
LK+E + G +++ + + V E E G M T + G + D
Sbjct: 16 LKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRT----LKGHGNKVLCMD 71
Query: 227 FKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS-----RFVQAVRYSPSGSHFASAG 281
+ + RI++ S+D + V++ T +EH+ +V A Y+PSG A G
Sbjct: 72 WCKDKR-RIVSSSQDGKVIVWDSFT-----TNKEHAVTMPCTWVMACAYAPSGCAIACGG 125
Query: 282 FDGKVFLY----DGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET 337
D K +Y D + H + A ++ Q+LTASGD TC LWD+E+
Sbjct: 126 LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVES 185
Query: 338 KSAVSEF 344
+ F
Sbjct: 186 GQLLQSF 192
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 117/306 (38%), Gaps = 23/306 (7%)
Query: 41 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT--EYIFATLPRTQ--------R 90
R +KGH + + D+ + + S DG + W++ T + T+P T
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 117
Query: 91 GQPIVLGG-DPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASG 149
G I GG D K + T +N A H+ ++ ++ S I +
Sbjct: 118 GCAIACGGLDNKCSVYPLT-----FDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTA 172
Query: 150 DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG 209
G +WD + + L FH G + + +P V G ++ V+ +G
Sbjct: 173 SGDGTCALWDVESGQ--LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG 230
Query: 210 TSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE-GPPFKFKMTKQEHSRF-VQA 267
V +NS + PS +GS+D T +++ + + +E F +
Sbjct: 231 QCVQAFETHESDVNSVRYYPSGD-AFASGSDDATCRLYDLRADREVAIYSKESIIFGASS 289
Query: 268 VRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD 327
V +S SG + D + ++D VS L H+ V + PDGT + S D
Sbjct: 290 VDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL--FGHENRVSTLRVSPDGTAFCSGSWD 347
Query: 328 KTCKLW 333
T ++W
Sbjct: 348 HTLRVW 353
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
Query: 215 ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG 274
+SG P+ F P +++ SED TI V++ F+ T + H+ VQ + + SG
Sbjct: 104 LSGHRSPVTRVIFHPVFSV-MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 275 SHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWD 334
AS D + L+D + + + H V +V+ P+G +++AS DKT K+W+
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMH--GHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 335 IETKSAVSEF 344
++T V F
Sbjct: 221 VQTGYCVKTF 230
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 24/208 (11%)
Query: 235 IITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASA 294
I++ S D TI ++E T H +V+ VR + G+ AS D V ++ A+
Sbjct: 207 IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK 266
Query: 295 DLVSELGNPAHKGGVYAVAWKPD--------------------GTQLLTASGDKTCKLWD 334
+ +EL H+ V ++W P+ G LL+ S DKT K+WD
Sbjct: 267 ECKAELRE--HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324
Query: 335 IETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKP 394
+ T + L+G+ + V G ++L+ + + D N ++ + H
Sbjct: 325 VSTGMCLMT-LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC-MKTLNAHEHF 382
Query: 395 ITALALSPDRGTVFTGSHDGFITRWNAK 422
+T+L V TGS D + W +
Sbjct: 383 VTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/295 (20%), Positives = 109/295 (36%), Gaps = 71/295 (24%)
Query: 40 IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGD 99
IR + GH+ ++++++ P+ + + S D I W +T Y T
Sbjct: 185 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT--------------- 229
Query: 100 PKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 159
+T H V + + + G IAS VR+W
Sbjct: 230 ---------------------------FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262
Query: 160 TVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQS 219
KE K E ++ I+W+P++ + +SE S + SG+
Sbjct: 263 VATKE--CKAELREHRHVVECISWAPES-------------SYSSISEATGSETKKSGKP 307
Query: 220 KPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFAS 279
P +++GS D TI +++ MT H +V+ V + G S
Sbjct: 308 GPF------------LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILS 355
Query: 280 AGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWD 334
D + ++D + + L AH+ V ++ + ++T S D+T K+W+
Sbjct: 356 CADDKTLRVWDYKNKRCMKTLN--AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 7/168 (4%)
Query: 191 VVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP 250
V+V + V+ ETG + G + + F S + + S D TI +++
Sbjct: 122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL-LASCSADMTIKLWDFQ 180
Query: 251 PFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVY 310
F+ T H V +V P+G H SA D + +++ + V H+ V
Sbjct: 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF--TGHREWVR 238
Query: 311 AVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCL 358
V DGT + + S D+T ++W + TK +E V V C+
Sbjct: 239 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV----VECI 282
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 305 HKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYL 364
H+ V V + P + +++AS D T K+WD ET L G+ Q +S G L
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYET-GDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 365 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
+ S I D IR + GH+ ++++++ P+ + + S D I W +T
Sbjct: 166 ASCSADMTIKLWDFQGFEC-IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 223
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 99/226 (43%), Gaps = 14/226 (6%)
Query: 123 ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPI---K 179
I ++ S V + P+ ++ + SG+V +W+ + + P+ K
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEV--RSIQVTETPVRAGK 62
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
IA + ++VG R VF TG V + I S P++P+ +++GS
Sbjct: 63 FIA----RKNWIIVGSDDFRI-RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGS 116
Query: 240 EDNTIAVFEGPP-FKFKMTKQEHSRFVQAVRYSPSG-SHFASAGFDGKVFLYDGASADLV 297
+D T+ ++ + + T + H FV V ++P S FAS D V ++ +
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 298 SELGNPAHKGGVYAVAWK-PDGTQLLTASGDKTCKLWDIETKSAVS 342
L +G Y + PD ++TAS D T K+WD +TKS V+
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 112/289 (38%), Gaps = 46/289 (15%)
Query: 18 YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 77
++LT SG + + +R I+ P+ A + + GS D I +N
Sbjct: 27 WVLTTLYSGRVELWNYET-QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85
Query: 78 T-EYI--FATLPRTQRG------QPIVLGGDPKGKNFLYTNGNSVIIRNIENP-AISDIY 127
T E + F P R +P VL G ++ +V + N EN A+ +
Sbjct: 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSG---------SDDLTVKLWNWENNWALEQTF 136
Query: 128 TEHSCAVNVAKYSPSG-FYIASGDISGKVRIWD-----------TVNKEHILKNEFHPIG 175
H V ++P ASG + V++W T + + +++P+
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL- 195
Query: 176 GPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRI 235
PD M+ + + ++ +T + V + G ++ F P+ P I
Sbjct: 196 ---------PDKPYMITASD--DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI-I 243
Query: 236 ITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG-SHFASAGFD 283
I+GSED T+ ++ +K + T + P+G ++ ++GFD
Sbjct: 244 ISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD 292
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 54/144 (37%), Gaps = 21/144 (14%)
Query: 215 ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG 274
S +S + DF P+ P+ + T ++ G + Q R +Q
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTT--------LYSGRVELWNYETQVEVRSIQVTETPVRA 60
Query: 275 SHF---------ASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS 325
F S F +VF Y+ + E AH + ++A P +L+ S
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE----AHPDYIRSIAVHPTKPYVLSGS 116
Query: 326 GDKTCKLWDIETKSAVSEFLMGNQ 349
D T KLW+ E A+ + G++
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHE 140
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 99/226 (43%), Gaps = 14/226 (6%)
Query: 123 ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPI---K 179
I ++ S V + P+ ++ + SG+V +W+ + + P+ K
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEV--RSIQVTETPVRAGK 62
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
IA + ++VG R VF TG V + I S P++P+ +++GS
Sbjct: 63 FIA----RKNWIIVGSDDFRI-RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGS 116
Query: 240 EDNTIAVFEGPP-FKFKMTKQEHSRFVQAVRYSPSG-SHFASAGFDGKVFLYDGASADLV 297
+D T+ ++ + + T + H FV V ++P S FAS D V ++ +
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 298 SELGNPAHKGGVYAVAWK-PDGTQLLTASGDKTCKLWDIETKSAVS 342
L +G Y + PD ++TAS D T K+WD +TKS V+
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 112/289 (38%), Gaps = 46/289 (15%)
Query: 18 YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 77
++LT SG + + +R I+ P+ A + + GS D I +N
Sbjct: 27 WVLTTLYSGRVELWNYET-QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85
Query: 78 T-EYI--FATLPRTQRG------QPIVLGGDPKGKNFLYTNGNSVIIRNIENP-AISDIY 127
T E + F P R +P VL G ++ +V + N EN A+ +
Sbjct: 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSG---------SDDLTVKLWNWENNWALEQTF 136
Query: 128 TEHSCAVNVAKYSPSG-FYIASGDISGKVRIWD-----------TVNKEHILKNEFHPIG 175
H V ++P ASG + V++W T + + +++P+
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL- 195
Query: 176 GPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRI 235
PD M+ + + ++ +T + V + G ++ F P+ P I
Sbjct: 196 ---------PDKPYMITASD--DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI-I 243
Query: 236 ITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG-SHFASAGFD 283
I+GSED T+ ++ +K + T + P+G ++ ++GFD
Sbjct: 244 ISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD 292
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 54/144 (37%), Gaps = 21/144 (14%)
Query: 215 ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG 274
S +S + DF P+ P+ + T ++ G + Q R +Q
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTT--------LYSGRVELWNYETQVEVRSIQVTETPVRA 60
Query: 275 SHF---------ASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS 325
F S F +VF Y+ + E AH + ++A P +L+ S
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE----AHPDYIRSIAVHPTKPYVLSGS 116
Query: 326 GDKTCKLWDIETKSAVSEFLMGNQ 349
D T KLW+ E A+ + G++
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHE 140
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 93/234 (39%), Gaps = 30/234 (12%)
Query: 204 FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE--- 260
M+E T G + G + + P P I++ S D TI + +K+T+ E
Sbjct: 23 MMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIM-------WKLTRDETNY 75
Query: 261 ---------HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYA 311
HS FV V S G S +DG + L+D + H V +
Sbjct: 76 GIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF--VGHTKDVLS 133
Query: 312 VAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW-----QGDYLLT 366
VA+ D Q+++ S DKT KLW+ V ++ + ++ + VSC+ +++
Sbjct: 134 VAFSSDNRQIVSGSRDKTIKLWNTL---GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 190
Query: 367 VSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
+ ++ N I GH + + +SPD +G DG W+
Sbjct: 191 CGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 243
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 93/225 (41%), Gaps = 17/225 (7%)
Query: 208 TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF-KFKMTKQEHSRFVQ 266
TGT+ G +K + S F S +I++GS D TI ++ K+ + + HS +V
Sbjct: 117 TGTTTRRFVGHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVS 175
Query: 267 AVRYSPSGSH--FASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTA 324
VR+SP+ S+ S G+D V +++ A+ L + + H G + V PDG+ +
Sbjct: 176 CVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL--KTNHIGHTGYLNTVTVSPDGSLCASG 233
Query: 325 SGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNP--- 381
D LWD+ + G+ + C Y L + I D+
Sbjct: 234 GKDGQAMLWDLNEGKHLYTLDGGDIIN---ALCFSPNRYWLCAATGPSIKIWDLEGKIIV 290
Query: 382 -STPIRVIKGHNKP----ITALALSPDRGTVFTGSHDGFITRWNA 421
VI +K T+LA S D T+F G D + W
Sbjct: 291 DELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 120/310 (38%), Gaps = 58/310 (18%)
Query: 43 IKGHNKPITALALSPDR-GTVFTGSHDGFITRWN-AKTEYIFATLPRTQRGQPIVLGGDP 100
+KGHN +T +A +P + + S D I W + E + R RG
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG--------- 84
Query: 101 KGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDT 160
HS V+ S G + SG G +R+WD
Sbjct: 85 -----------------------------HSHFVSDVVISSDGQFALSGSWDGTLRLWDL 115
Query: 161 VNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVF--MSETGTSVGEISGQ 218
+ H + +A+S DN++ +V R++ ++ + +V + S
Sbjct: 116 TTGTTTRRFVGHT--KDVLSVAFSSDNRQ--IVSGSRDKTIKLWNTLGVCKYTVQDES-H 170
Query: 219 SKPINSCDFKP--SRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH 276
S+ ++ F P S P I++ D + V+ K K H+ ++ V SP GS
Sbjct: 171 SEWVSCVRFSPNSSNPI-IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL 229
Query: 277 FASAGFDGKVFLYDGASADLVSELGNPAHKGG--VYAVAWKPDGTQLLTASGDKTCKLWD 334
AS G DG+ L+D + L GG + A+ + P+ L A+G + K+WD
Sbjct: 230 CASGGKDGQAMLWDLNEGKHLYTL-----DGGDIINALCFSPNRYWLCAATG-PSIKIWD 283
Query: 335 IETKSAVSEF 344
+E K V E
Sbjct: 284 LEGKIIVDEL 293
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 96/242 (39%), Gaps = 14/242 (5%)
Query: 16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 75
G + L+ S G + D+ +T R + GH K + ++A S D + +GS D I WN
Sbjct: 98 GQFALSGSWDGTLRLWDLTTGTTTRRFV-GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156
Query: 76 AKTEYIFATLPRTQRGQPIVLGGDPKGKN-FLYTNGNSVIIR--NIENPAISDIYTEHSC 132
+ + + P N + + G +++ N+ N + + H+
Sbjct: 157 TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG 216
Query: 133 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVV 192
+N SP G ASG G+ +WD +H+ + G I + +SP N+ +
Sbjct: 217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG---GDIINALCFSP-NRYWLC 272
Query: 193 VGEG-----RERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFR-IITGSEDNTIAV 246
G + G + + E V S +++P S + + G DN + V
Sbjct: 273 AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 332
Query: 247 FE 248
++
Sbjct: 333 WQ 334
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 55/313 (17%), Positives = 116/313 (37%), Gaps = 57/313 (18%)
Query: 32 DVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRG 91
D N P R ++GH+ ++ + +S D +GS DG + W+ T T+R
Sbjct: 71 DETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD------LTTGTTTRR- 123
Query: 92 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI 151
+ H+ V +S I SG
Sbjct: 124 -----------------------------------FVGHTKDVLSVAFSSDNRQIVSGSR 148
Query: 152 SGKVRIWDTVN-KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVF-MSETG 209
+++W+T+ ++ +++E H + + +SP++ ++V G ++ V+ ++
Sbjct: 149 DKTIKLWNTLGVCKYTVQDESHS--EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK 206
Query: 210 TSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVR 269
I G + +N+ P +G +D +++ K T + + A+
Sbjct: 207 LKTNHI-GHTGYLNTVTVSPDGSL-CASGGKDGQAMLWDLNEGKHLYT-LDGGDIINALC 263
Query: 270 YSPSGSHFASAGFDGKVFLYDGASADLVSEL-------GNPAHKGGVYAVAWKPDGTQLL 322
+SP+ ++ A + ++D +V EL + A ++AW DG L
Sbjct: 264 FSPN-RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 322
Query: 323 TASGDKTCKLWDI 335
D ++W +
Sbjct: 323 AGYTDNLVRVWQV 335
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 377 DVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
D N P R ++GH+ ++ + +S D +GS DG + W+ T
Sbjct: 71 DETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTT 117
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 93/233 (39%), Gaps = 30/233 (12%)
Query: 205 MSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE---- 260
M+E T G + G + + P P I++ S D TI + +K+T+ E
Sbjct: 1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIM-------WKLTRDETNYG 53
Query: 261 --------HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAV 312
HS FV V S G S +DG + L+D + H V +V
Sbjct: 54 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF--VGHTKDVLSV 111
Query: 313 AWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW-----QGDYLLTV 367
A+ D Q+++ S DKT KLW+ V ++ + ++ + VSC+ +++
Sbjct: 112 AFSSDNRQIVSGSRDKTIKLWNTL---GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC 168
Query: 368 SLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
+ ++ N I GH + + +SPD +G DG W+
Sbjct: 169 GWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 220
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 93/225 (41%), Gaps = 17/225 (7%)
Query: 208 TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF-KFKMTKQEHSRFVQ 266
TGT+ G +K + S F S +I++GS D TI ++ K+ + + HS +V
Sbjct: 94 TGTTTRRFVGHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVS 152
Query: 267 AVRYSPSGSH--FASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTA 324
VR+SP+ S+ S G+D V +++ A+ L + + H G + V PDG+ +
Sbjct: 153 CVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL--KTNHIGHTGYLNTVTVSPDGSLCASG 210
Query: 325 SGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNP--- 381
D LWD+ + G+ + C Y L + I D+
Sbjct: 211 GKDGQAMLWDLNEGKHLYTLDGGDIIN---ALCFSPNRYWLCAATGPSIKIWDLEGKIIV 267
Query: 382 -STPIRVIKGHNKP----ITALALSPDRGTVFTGSHDGFITRWNA 421
VI +K T+LA S D T+F G D + W
Sbjct: 268 DELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 312
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 120/310 (38%), Gaps = 58/310 (18%)
Query: 43 IKGHNKPITALALSPDR-GTVFTGSHDGFITRWN-AKTEYIFATLPRTQRGQPIVLGGDP 100
+KGHN +T +A +P + + S D I W + E + R RG
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG--------- 61
Query: 101 KGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDT 160
HS V+ S G + SG G +R+WD
Sbjct: 62 -----------------------------HSHFVSDVVISSDGQFALSGSWDGTLRLWDL 92
Query: 161 VNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVF--MSETGTSVGEISGQ 218
+ H + +A+S DN++ +V R++ ++ + +V + S
Sbjct: 93 TTGTTTRRFVGHT--KDVLSVAFSSDNRQ--IVSGSRDKTIKLWNTLGVCKYTVQDES-H 147
Query: 219 SKPINSCDFKP--SRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH 276
S+ ++ F P S P I++ D + V+ K K H+ ++ V SP GS
Sbjct: 148 SEWVSCVRFSPNSSNPI-IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL 206
Query: 277 FASAGFDGKVFLYDGASADLVSELGNPAHKGG--VYAVAWKPDGTQLLTASGDKTCKLWD 334
AS G DG+ L+D + L GG + A+ + P+ L A+G + K+WD
Sbjct: 207 CASGGKDGQAMLWDLNEGKHLYTL-----DGGDIINALCFSPNRYWLCAATG-PSIKIWD 260
Query: 335 IETKSAVSEF 344
+E K V E
Sbjct: 261 LEGKIIVDEL 270
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 96/242 (39%), Gaps = 14/242 (5%)
Query: 16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 75
G + L+ S G + D+ +T R + GH K + ++A S D + +GS D I WN
Sbjct: 75 GQFALSGSWDGTLRLWDLTTGTTTRRFV-GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 133
Query: 76 AKTEYIFATLPRTQRGQPIVLGGDPKGKN-FLYTNGNSVIIR--NIENPAISDIYTEHSC 132
+ + + P N + + G +++ N+ N + + H+
Sbjct: 134 TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG 193
Query: 133 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVV 192
+N SP G ASG G+ +WD +H+ + G I + +SP N+ +
Sbjct: 194 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG---GDIINALCFSP-NRYWLC 249
Query: 193 VGEG-----RERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFR-IITGSEDNTIAV 246
G + G + + E V S +++P S + + G DN + V
Sbjct: 250 AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 309
Query: 247 FE 248
++
Sbjct: 310 WQ 311
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 55/313 (17%), Positives = 116/313 (37%), Gaps = 57/313 (18%)
Query: 32 DVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRG 91
D N P R ++GH+ ++ + +S D +GS DG + W+ T T+R
Sbjct: 48 DETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD------LTTGTTTRR- 100
Query: 92 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI 151
+ H+ V +S I SG
Sbjct: 101 -----------------------------------FVGHTKDVLSVAFSSDNRQIVSGSR 125
Query: 152 SGKVRIWDTVN-KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVF-MSETG 209
+++W+T+ ++ +++E H + + +SP++ ++V G ++ V+ ++
Sbjct: 126 DKTIKLWNTLGVCKYTVQDESHS--EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK 183
Query: 210 TSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVR 269
I G + +N+ P +G +D +++ K T + + A+
Sbjct: 184 LKTNHI-GHTGYLNTVTVSPDGSL-CASGGKDGQAMLWDLNEGKHLYT-LDGGDIINALC 240
Query: 270 YSPSGSHFASAGFDGKVFLYDGASADLVSEL-------GNPAHKGGVYAVAWKPDGTQLL 322
+SP+ ++ A + ++D +V EL + A ++AW DG L
Sbjct: 241 FSPN-RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 299
Query: 323 TASGDKTCKLWDI 335
D ++W +
Sbjct: 300 AGYTDNLVRVWQV 312
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 377 DVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
D N P R ++GH+ ++ + +S D +GS DG + W+ T
Sbjct: 48 DETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTT 94
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 98/223 (43%), Gaps = 8/223 (3%)
Query: 123 ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIA 182
I ++ S V + P+ ++ + SG+V IW+ + + P++
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEV--RSIQVTETPVRAGK 62
Query: 183 WSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN 242
+ + ++VG R VF TG V + I S P++P+ +++GS+D
Sbjct: 63 FIA-RKNWIIVGSDDFRI-RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDL 119
Query: 243 TIAVFEGPP-FKFKMTKQEHSRFVQAVRYSPSG-SHFASAGFDGKVFLYDGASADLVSEL 300
T+ ++ + + T + H FV V ++P S FAS D V ++ + L
Sbjct: 120 TVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL 179
Query: 301 GNPAHKGGVYAVAWK-PDGTQLLTASGDKTCKLWDIETKSAVS 342
+G Y + PD ++TAS D T K+WD +TKS V+
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 112/289 (38%), Gaps = 46/289 (15%)
Query: 18 YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 77
++LT SG + + +R I+ P+ A + + GS D I +N
Sbjct: 27 WVLTTLYSGRVEIWNYET-QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85
Query: 78 T-EYI--FATLPRTQRG------QPIVLGGDPKGKNFLYTNGNSVIIRNIENP-AISDIY 127
T E + F P R +P VL G ++ +V + N EN A+ +
Sbjct: 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSG---------SDDLTVKLWNWENNWALEQTF 136
Query: 128 TEHSCAVNVAKYSPSG-FYIASGDISGKVRIWD-----------TVNKEHILKNEFHPIG 175
H V ++P ASG + V++W T + + +++P+
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL- 195
Query: 176 GPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRI 235
PD M+ + + ++ +T + V + G ++ F P+ P I
Sbjct: 196 ---------PDKPYMITASD--DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI-I 243
Query: 236 ITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG-SHFASAGFD 283
I+GSED T+ ++ +K + T + P+G ++ ++GFD
Sbjct: 244 ISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD 292
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 54/144 (37%), Gaps = 21/144 (14%)
Query: 215 ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG 274
S +S + DF P+ P+ + T ++ G + Q R +Q
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTT--------LYSGRVEIWNYETQVEVRSIQVTETPVRA 60
Query: 275 SHF---------ASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS 325
F S F +VF Y+ + E AH + ++A P +L+ S
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE----AHPDYIRSIAVHPTKPYVLSGS 116
Query: 326 GDKTCKLWDIETKSAVSEFLMGNQ 349
D T KLW+ E A+ + G++
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHE 140
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 18 YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 77
Y++T S I D S + ++GH ++ P + +GS DG + WN+
Sbjct: 200 YMITASDDLTIKIWDYQTKSC-VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258
Query: 78 TEYIFATLPRTQRGQPIVLGGDPKG-KNFL---YTNGNSVIIRNIENPAIS 124
T + TL + + P G KN++ + NG +V+ + P +S
Sbjct: 259 TYKVEKTL-NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLS 308
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 99/226 (43%), Gaps = 14/226 (6%)
Query: 123 ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPI---K 179
I ++ S V + P+ ++ + SG+V +W+ + + P+ K
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEV--RSIQVTETPVRAGK 62
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
IA + ++VG R VF TG V + I S P++P+ +++GS
Sbjct: 63 FIA----RKNWIIVGSDDFRI-RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGS 116
Query: 240 EDNTIAVFEGPP-FKFKMTKQEHSRFVQAVRYSPSG-SHFASAGFDGKVFLYDGASADLV 297
+D T+ ++ + + T + H FV V ++P S FAS D V ++ +
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 298 SELGNPAHKGGVYAVAWK-PDGTQLLTASGDKTCKLWDIETKSAVS 342
L +G Y + PD ++TAS D T K+WD +TKS V+
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 114/291 (39%), Gaps = 50/291 (17%)
Query: 18 YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 77
++LT SG + + +R I+ P+ A + + GS D I +N
Sbjct: 27 WVLTTLYSGRVELWNYET-QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85
Query: 78 T-EYI--FATLPRTQRG------QPIVLGGDPKGKNFLYTNGNSVIIRNIENP-AISDIY 127
T E + F P R +P VL G ++ +V + N EN A+ +
Sbjct: 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSG---------SDDLTVKLWNWENNWALEQTF 136
Query: 128 TEHSCAVNVAKYSP---SGFYIASGDISGKVRIWD-----------TVNKEHILKNEFHP 173
H V ++P S F ASG + V++W T + + +++P
Sbjct: 137 EGHEHFVMCVAFNPKDPSTF--ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP 194
Query: 174 IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPF 233
+ PD M+ + + ++ +T + V + G ++ F P+ P
Sbjct: 195 L----------PDKPYMITASD--DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 234 RIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG-SHFASAGFD 283
II+GSED T+ ++ +K + T + P+G ++ ++GFD
Sbjct: 243 -IISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD 292
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 54/144 (37%), Gaps = 21/144 (14%)
Query: 215 ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG 274
S +S + DF P+ P+ + T ++ G + Q R +Q
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTT--------LYSGRVELWNYETQVEVRSIQVTETPVRA 60
Query: 275 SHF---------ASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS 325
F S F +VF Y+ + E AH + ++A P +L+ S
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE----AHPDYIRSIAVHPTKPYVLSGS 116
Query: 326 GDKTCKLWDIETKSAVSEFLMGNQ 349
D T KLW+ E A+ + G++
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHE 140
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 18 YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 77
Y++T S I D S + ++GH ++ P + +GS DG + WN+
Sbjct: 200 YMITASDDLTIKIWDYQTKSC-VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258
Query: 78 TEYIFATLPRTQRGQPIVLGGDPKG-KNFL---YTNGNSVIIRNIENPAIS 124
T + TL + + P G KN++ + NG +V+ + P +S
Sbjct: 259 TYKVEKTL-NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLS 308
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 110/241 (45%), Gaps = 18/241 (7%)
Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 189
HS V+ S +G + S +R+W+ N + K H + +A+SPDN++
Sbjct: 66 HSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHT--KDVLSVAFSPDNRQ 123
Query: 190 MVVVGEGRERFGHVFMSETGTSVGEIS--GQSKPINSCDFKPS--RPFRIITGSEDNTIA 245
+V GR+ V+ + G + +S + ++ F PS P I++G DN +
Sbjct: 124 --IVSGGRDNALRVW-NVKGECMHTLSRGAHTDWVSCVRFSPSLDAPV-IVSGGWDNLVK 179
Query: 246 VFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAH 305
V++ + + H+ +V +V SP GS AS+ DG L+D + +SE+ A
Sbjct: 180 VWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEM---AA 236
Query: 306 KGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQ----VEDQQVSCLWQG 361
+ + + P+ + A+ +K +++D+E K + E +Q + + VS W
Sbjct: 237 GAPINQICFSPN-RYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSA 295
Query: 362 D 362
D
Sbjct: 296 D 296
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 9/185 (4%)
Query: 15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRW 74
G++ ++ S + ++ N + + GH K + ++A SPD + +G D + W
Sbjct: 78 NGNFAVSASWDHSLRLWNLQNGQCQYKFL-GHTKDVLSVAFSPDNRQIVSGGRDNALRVW 136
Query: 75 NAKTEYIFATLPRTQRGQPI-VLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTE---H 130
N K E + TL R + + P + +G + + + A + T+ H
Sbjct: 137 NVKGECMH-TLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGH 195
Query: 131 SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRM 190
+ V SP G AS D G R+WD E + + G PI I +SP+ M
Sbjct: 196 TNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSE---MAAGAPINQICFSPNRYWM 252
Query: 191 VVVGE 195
E
Sbjct: 253 CAATE 257
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 22/224 (9%)
Query: 213 GEISGQSKPINS--CDFKPSRPFRIITGSEDNTIAVFEGPPFKFK---------MTKQEH 261
G+++G + S C P ++++ S D T+ + P + + H
Sbjct: 7 GQLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGH 66
Query: 262 SRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQL 321
S FV V S +G+ SA +D + L++ + + H V +VA+ PD Q+
Sbjct: 67 SAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKF--LGHTKDVLSVAFSPDNRQI 124
Query: 322 LTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW---QGDYLLTVSLSGFISYLDV 378
++ D ++W+++ + + VSC+ D + VS G+ + + V
Sbjct: 125 VSGGRDNALRVWNVKGECM---HTLSRGAHTDWVSCVRFSPSLDAPVIVS-GGWDNLVKV 180
Query: 379 NNPSTPIRV--IKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
+ +T V +KGH +T++ +SPD + DG W+
Sbjct: 181 WDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD 224
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/304 (18%), Positives = 111/304 (36%), Gaps = 55/304 (18%)
Query: 39 PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGG 98
P R ++GH+ ++ +ALS + + S D + W
Sbjct: 59 PDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLW------------------------ 94
Query: 99 DPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 158
N++N + H+ V +SP I SG +R+W
Sbjct: 95 ------------------NLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVW 136
Query: 159 DTVNK-EHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISG 217
+ + H L H + + +SP V+V G + V+ TG V ++ G
Sbjct: 137 NVKGECMHTLSRGAHT--DWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKG 194
Query: 218 QSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHF 277
+ + S P + S+ + +A +++ + + +SP+ ++
Sbjct: 195 HTNYVTSVTVSPDGS--LCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPN-RYW 251
Query: 278 ASAGFDGKVFLYDGASADLVSELGNPAHKGG------VYAVAWKPDGTQLLTASGDKTCK 331
A + + ++D + D++ EL P H+G ++AW DG+ L + D +
Sbjct: 252 MCAATEKGIRIFDLENKDIIVELA-PEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIR 310
Query: 332 LWDI 335
+W +
Sbjct: 311 VWGV 314
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 305 HKGGVYAVAW--KPD-GTQLLTASGDKTCKLWDIETKSAVSEF--------LMGNQVEDQ 353
H+G V ++A P+ T++++ S DKT W SE L G+
Sbjct: 12 HRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVS 71
Query: 354 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHD 413
V+ G++ ++ S + ++ N + + GH K + ++A SPD + +G D
Sbjct: 72 DVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFL-GHTKDVLSVAFSPDNRQIVSGGRD 130
Query: 414 GFITRWNAK 422
+ WN K
Sbjct: 131 NALRVWNVK 139
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/296 (21%), Positives = 120/296 (40%), Gaps = 40/296 (13%)
Query: 145 YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRM-VVVGEGRERFGHV 203
Y+ +G +R++D++NK+ +L+ H G W+ ++V +R V
Sbjct: 134 YVITGADDKMIRVYDSINKKFLLQLSGHDGG------VWALKYAHGGILVSGSTDRTVRV 187
Query: 204 FMSETGTSVGEISGQSKPINSCDFKPSRPFR-IITGSEDNTIAVFEGP------------ 250
+ + G G + + D + + I+TGS DNT+ V++ P
Sbjct: 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH 247
Query: 251 --PFKFKMTKQEHSRFVQAVR--------YSPSGSHFASAGFDGKVFLYDGASADLVSEL 300
P F T +E+ FV +R S G+ S +D + ++D A + L
Sbjct: 248 DYPLVFH-TPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL 306
Query: 301 GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQ 360
H +Y+ + + + ++AS D T ++WD+E E + Q V L
Sbjct: 307 --SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN----GELMYTLQGHTALVGLLRL 360
Query: 361 GD-YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGF 415
D +L++ + G I D N+ S + IT +S + + +GS + F
Sbjct: 361 SDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDN--ILVSGSENQF 414
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Query: 215 ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP------PFKFK-MTKQEHSRFVQA 267
+ G + P+ + P I +GSED T+ V+E P P + +T + H++ V
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 268 VRYSPSGSH-FASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASG 326
V + P+ + SAG D + ++D + V LG H +Y+V W DG + T+
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196
Query: 327 DKTCKLWDIETKSAVSE 343
DK ++ + + V+E
Sbjct: 197 DKRVRVIEPRKGTVVAE 213
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 11/173 (6%)
Query: 182 AWSPDNQRMVVVGEGRERFGHVFMSETG---TSVGEISGQSKPINSCDFKPSRPFRIITG 238
A +P ++ G F + + +TG +V + G + P+ + P I +G
Sbjct: 41 AVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASG 100
Query: 239 SEDNTIAVFEGP------PFKFK-MTKQEHSRFVQAVRYSPSGSH-FASAGFDGKVFLYD 290
SED T+ V+E P P + +T + H++ V V + P+ + SAG D + ++D
Sbjct: 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD 160
Query: 291 GASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSE 343
+ V LG H +Y+V W DG + T+ DK ++ + + V+E
Sbjct: 161 VGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAE 213
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 87/188 (46%), Gaps = 13/188 (6%)
Query: 235 IITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGAS- 293
IITGS D+T+ V++ + T H V +R++ + D + ++D AS
Sbjct: 186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASP 243
Query: 294 ADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQ 353
D+ H+ V V + D +++ASGD+T K+W+ T EF+ +
Sbjct: 244 TDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTST----CEFVRTLNGHKR 297
Query: 354 QVSCLWQGDYLLTV-SLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSH 412
++CL D L+ S I D+ + +RV++GH + + + D + +G++
Sbjct: 298 GIACLQYRDRLVVSGSSDNTIRLWDIECGAC-LRVLEGHEELVRCIRF--DNKRIVSGAY 354
Query: 413 DGFITRWN 420
DG I W+
Sbjct: 355 DGKIKVWD 362
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/304 (20%), Positives = 112/304 (36%), Gaps = 69/304 (22%)
Query: 41 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDP 100
R++ GH + L L D + TGS D + W+ T + TL + ++
Sbjct: 167 RILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTL--IHHCEAVLHLRFN 222
Query: 101 KGKNFLYTNGNSVIIRNIENP---AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRI 157
G + S+ + ++ +P + + H AVNV + ASGD + +++
Sbjct: 223 NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRT--IKV 280
Query: 158 WDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISG 217
W+T E + + G + IA R+VV
Sbjct: 281 WNTSTCEFV-----RTLNGHKRGIACLQYRDRLVV------------------------- 310
Query: 218 QSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHF 277
+GS DNTI +++ + H V+ +R+
Sbjct: 311 -------------------SGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRI 349
Query: 278 ASAGFDGKVFLYDGASA-DLVSELGNPA------HKGGVYAVAWKPDGTQLLTASGDKTC 330
S +DGK+ ++D +A D + G H G V+ + + D Q++++S D T
Sbjct: 350 VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTI 407
Query: 331 KLWD 334
+WD
Sbjct: 408 LIWD 411
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 14/148 (9%)
Query: 19 LLTVSLSGFISYLDVNNPS--TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA 76
++T S I+ D+ +P+ T RV+ GH + + D + + S D I WN
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNT 283
Query: 77 KTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNG---NSVIIRNIENPAISDIYTEHSCA 133
T TL +RG + + ++ L +G N++ + +IE A + H
Sbjct: 284 STCEFVRTLNGHKRGIACL-----QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL 338
Query: 134 VNVAKYSPSGFYIASGDISGKVRIWDTV 161
V ++ I SG GK+++WD V
Sbjct: 339 VRCIRFDNK--RIVSGAYDGKIKVWDLV 364
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 69/169 (40%), Gaps = 13/169 (7%)
Query: 257 TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP 316
+ E S+ V ++Y S D + ++D + + L H G V + +
Sbjct: 128 CRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRIL--TGHTGSVLCLQY-- 181
Query: 317 DGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYL 376
D ++T S D T ++WD+ T ++ + + + + ++T S I+
Sbjct: 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA---VLHLRFNNGMMVTCSKDRSIAVW 238
Query: 377 DVNNPS--TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
D+ +P+ T RV+ GH + + D + + S D I WN T
Sbjct: 239 DMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTST 285
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/296 (21%), Positives = 119/296 (40%), Gaps = 40/296 (13%)
Query: 145 YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRM-VVVGEGRERFGHV 203
Y+ +G +R++D++NK+ +L+ H G W+ ++V +R V
Sbjct: 134 YVITGADDKXIRVYDSINKKFLLQLSGHDGG------VWALKYAHGGILVSGSTDRTVRV 187
Query: 204 FMSETGTSVGEISGQSKPINSCDFKPSRPFR-IITGSEDNTIAVFEGP------------ 250
+ + G G + + D + + I+TGS DNT+ V++ P
Sbjct: 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH 247
Query: 251 --PFKFKMTKQEHSRFVQAVR--------YSPSGSHFASAGFDGKVFLYDGASADLVSEL 300
P F T +E+ FV +R S G+ S +D + ++D A + L
Sbjct: 248 DYPLVFH-TPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYIL 306
Query: 301 GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQ 360
H +Y+ + + + ++AS D T ++WD+E E Q V L
Sbjct: 307 --SGHTDRIYSTIYDHERKRCISASXDTTIRIWDLEN----GELXYTLQGHTALVGLLRL 360
Query: 361 GD-YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGF 415
D +L++ + G I D N+ S + IT +S + + +GS + F
Sbjct: 361 SDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDN--ILVSGSENQF 414
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 16/219 (7%)
Query: 213 GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE--GPPFKFKM---TKQEHSRFVQA 267
G + G + + S +P +++ S D T+ ++ G KF + + + HS VQ
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 268 VRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD 327
+ G++ SA +D + L+D A+ + HK V +V + +++ S D
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRF--VGHKSDVMSVDIDKKASMIISGSRD 128
Query: 328 KTCKLWDIETKSAVSEFLMGNQVEDQQVSCL---WQGDYLLTVSLSG---FISYLDVNNP 381
KT K+W I+ + + L+G+ QV + D +T+ +G + ++N
Sbjct: 129 KTIKVWTIKGQCLAT--LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 382 STPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
I GHN I L SPD + + DG I WN
Sbjct: 187 QIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 86/210 (40%), Gaps = 15/210 (7%)
Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 189
HS V + G Y S +R+WD E + H DI D +
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI----DKKA 119
Query: 190 MVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRP-----FRIITGSEDNTI 244
+++ R++ V+ + G + + G + ++ P+ II+ D +
Sbjct: 120 SMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178
Query: 245 AVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPA 304
+ F+ + H+ + + SP G+ ASAG DG++ L++ A+ + L +
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL---S 235
Query: 305 HKGGVYAVAWKPDGTQL--LTASGDKTCKL 332
+ V+++A+ P+ L TA+G K L
Sbjct: 236 AQDEVFSLAFSPNRYWLAAATATGIKVFSL 265
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 63/156 (40%), Gaps = 6/156 (3%)
Query: 16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 75
G Y L+ S + DV T R + GH + ++ + + +GS D I W
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135
Query: 76 AKTEYIFATLPRTQRGQPIVLGGDPKGKN---FLYTNGNSVIIR--NIENPAISDIYTEH 130
K + + L + + + K + + + GN +++ N+ I + H
Sbjct: 136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195
Query: 131 SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 166
+ +N SP G IAS G++ +W+ K+ +
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 45 GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATL 85
GHN I L SPD + + DG I WN + TL
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 16/219 (7%)
Query: 213 GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE--GPPFKFKM---TKQEHSRFVQA 267
G + G + + S +P +++ S D T+ ++ G KF + + + HS VQ
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 268 VRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD 327
+ G++ SA +D + L+D A+ + HK V +V + +++ S D
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRF--VGHKSDVMSVDIDKKASMIISGSRD 128
Query: 328 KTCKLWDIETKSAVSEFLMGNQVEDQQVSCL---WQGDYLLTVSLSG---FISYLDVNNP 381
KT K+W I+ + + L+G+ QV + D +T+ +G + ++N
Sbjct: 129 KTIKVWTIKGQCLAT--LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 382 STPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
I GHN I L SPD + + DG I WN
Sbjct: 187 QIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 86/210 (40%), Gaps = 15/210 (7%)
Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 189
HS V + G Y S +R+WD E + H DI D +
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI----DKKA 119
Query: 190 MVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRP-----FRIITGSEDNTI 244
+++ R++ V+ + G + + G + ++ P+ II+ D +
Sbjct: 120 SMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178
Query: 245 AVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPA 304
+ F+ + H+ + + SP G+ ASAG DG++ L++ A+ + L +
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL---S 235
Query: 305 HKGGVYAVAWKPDGTQL--LTASGDKTCKL 332
+ V+++A+ P+ L TA+G K L
Sbjct: 236 AQDEVFSLAFSPNRYWLAAATATGIKVFSL 265
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 63/156 (40%), Gaps = 6/156 (3%)
Query: 16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 75
G Y L+ S + DV T R + GH + ++ + + +GS D I W
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135
Query: 76 AKTEYIFATLPRTQRGQPIVLGGDPKGKN---FLYTNGNSVIIR--NIENPAISDIYTEH 130
K + + L + + + K + + + GN +++ N+ I + H
Sbjct: 136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195
Query: 131 SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 166
+ +N SP G IAS G++ +W+ K+ +
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 45 GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATL 85
GHN I L SPD + + DG I WN + TL
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 16/219 (7%)
Query: 213 GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE--GPPFKFKM---TKQEHSRFVQA 267
G + G + + S +P +++ S D T+ ++ G KF + + + HS VQ
Sbjct: 5 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 64
Query: 268 VRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD 327
+ G++ SA +D + L+D A+ + HK V +V + +++ S D
Sbjct: 65 CTLTADGAYALSASWDKTLRLWDVATGETYQRF--VGHKSDVMSVDIDKKASMIISGSRD 122
Query: 328 KTCKLWDIETKSAVSEFLMGNQVEDQQVSCL---WQGDYLLTVSLSG---FISYLDVNNP 381
KT K+W I+ + + L+G+ QV + D +T+ +G + ++N
Sbjct: 123 KTIKVWTIKGQCLAT--LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 180
Query: 382 STPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
I GHN I L SPD + + DG I WN
Sbjct: 181 QIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 86/210 (40%), Gaps = 15/210 (7%)
Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 189
HS V + G Y S +R+WD E + H DI D +
Sbjct: 58 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI----DKKA 113
Query: 190 MVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRP-----FRIITGSEDNTI 244
+++ R++ V+ + G + + G + ++ P+ II+ D +
Sbjct: 114 SMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 172
Query: 245 AVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPA 304
+ F+ + H+ + + SP G+ ASAG DG++ L++ A+ + L +
Sbjct: 173 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL---S 229
Query: 305 HKGGVYAVAWKPDGTQL--LTASGDKTCKL 332
+ V+++A+ P+ L TA+G K L
Sbjct: 230 AQDEVFSLAFSPNRYWLAAATATGIKVFSL 259
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 63/156 (40%), Gaps = 6/156 (3%)
Query: 16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 75
G Y L+ S + DV T R + GH + ++ + + +GS D I W
Sbjct: 71 GAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWT 129
Query: 76 AKTEYIFATLPRTQRGQPIVLGGDPKGKN---FLYTNGNSVIIR--NIENPAISDIYTEH 130
K + + L + + + K + + + GN +++ N+ I + H
Sbjct: 130 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 189
Query: 131 SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 166
+ +N SP G IAS G++ +W+ K+ +
Sbjct: 190 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 225
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 45 GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATL 85
GHN I L SPD + + DG I WN + TL
Sbjct: 188 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 228
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 16/219 (7%)
Query: 213 GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE--GPPFKFKM---TKQEHSRFVQA 267
G + G + + S +P +++ S D T+ ++ G KF + + + HS VQ
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 268 VRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD 327
+ G++ SA +D + L+D A+ + HK V +V + +++ S D
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRF--VGHKSDVMSVDIDKKASMIISGSRD 128
Query: 328 KTCKLWDIETKSAVSEFLMGNQVEDQQVSCL---WQGDYLLTVSLSG---FISYLDVNNP 381
KT K+W I+ + + L+G+ QV + D +T+ +G + ++N
Sbjct: 129 KTIKVWTIKGQCLAT--LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 382 STPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
I GHN I L SPD + + DG I WN
Sbjct: 187 QIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 86/210 (40%), Gaps = 15/210 (7%)
Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 189
HS V + G Y S +R+WD E + H DI D +
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI----DKKA 119
Query: 190 MVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRP-----FRIITGSEDNTI 244
+++ R++ V+ + G + + G + ++ P+ II+ D +
Sbjct: 120 SMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178
Query: 245 AVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPA 304
+ F+ + H+ + + SP G+ ASAG DG++ L++ A+ + L +
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL---S 235
Query: 305 HKGGVYAVAWKPDGTQL--LTASGDKTCKL 332
+ V+++A+ P+ L TA+G K L
Sbjct: 236 AQDEVFSLAFSPNRYWLAAATATGIKVFSL 265
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 63/156 (40%), Gaps = 6/156 (3%)
Query: 16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 75
G Y L+ S + DV T R + GH + ++ + + +GS D I W
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135
Query: 76 AKTEYIFATLPRTQRGQPIVLGGDPKGKN---FLYTNGNSVIIR--NIENPAISDIYTEH 130
K + + L + + + K + + + GN +++ N+ I + H
Sbjct: 136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195
Query: 131 SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 166
+ +N SP G IAS G++ +W+ K+ +
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 87/230 (37%), Gaps = 22/230 (9%)
Query: 208 TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQA 267
TG + G + S D + II+GS D TI V+ + T H+ +V
Sbjct: 96 TGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWT-IKGQCLATLLGHNDWVSQ 153
Query: 268 VRYSPSGSH------FASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQL 321
VR P+ SAG D V ++ + ++ H + + PDGT +
Sbjct: 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLI 211
Query: 322 LTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNP 381
+A D LW++ K A+ ++V S Y L + + I + +P
Sbjct: 212 ASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS---PNRYWLAAATATGIKVFSL-DP 267
Query: 382 STPIRVIK----GHNKP----ITALALSPDRGTVFTGSHDGFITRWNAKT 423
+ ++ G++ +LA S D T+F G D I W T
Sbjct: 268 QYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 45 GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATL 85
GHN I L SPD + + DG I WN + TL
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
Query: 321 LLTASGDKTCKLWDI---ETKSAV-SEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYL 376
LL+AS DKT W + + K V G+ Q + G Y L+ S +
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 377 DVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 422
DV T R + GH + ++ + + +GS D I W K
Sbjct: 93 DVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 16/219 (7%)
Query: 213 GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE--GPPFKFKM---TKQEHSRFVQA 267
G + G + + S +P +++ S D T+ ++ G KF + + + HS VQ
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 268 VRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD 327
+ G++ SA +D + L+D A+ + HK V +V + +++ S D
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRF--VGHKSDVMSVDIDKKASMIISGSRD 128
Query: 328 KTCKLWDIETKSAVSEFLMGNQVEDQQVSCL---WQGDYLLTVSLSG---FISYLDVNNP 381
KT K+W I+ + + L+G+ QV + D +T+ +G + ++N
Sbjct: 129 KTIKVWTIKGQCLAT--LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 382 STPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
I GHN I L SPD + + DG I WN
Sbjct: 187 QIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 86/210 (40%), Gaps = 15/210 (7%)
Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 189
HS V + G Y S +R+WD E + H DI D +
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI----DKKA 119
Query: 190 MVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRP-----FRIITGSEDNTI 244
+++ R++ V+ + G + + G + ++ P+ II+ D +
Sbjct: 120 SMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178
Query: 245 AVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPA 304
+ F+ + H+ + + SP G+ ASAG DG++ L++ A+ + L +
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL---S 235
Query: 305 HKGGVYAVAWKPDGTQL--LTASGDKTCKL 332
+ V+++A+ P+ L TA+G K L
Sbjct: 236 AQDEVFSLAFSPNRYWLAAATATGIKVFSL 265
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 63/156 (40%), Gaps = 6/156 (3%)
Query: 16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 75
G Y L+ S + DV T R + GH + ++ + + +GS D I W
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135
Query: 76 AKTEYIFATLPRTQRGQPIVLGGDPKGKN---FLYTNGNSVIIR--NIENPAISDIYTEH 130
K + + L + + + K + + + GN +++ N+ I + H
Sbjct: 136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195
Query: 131 SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 166
+ +N SP G IAS G++ +W+ K+ +
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 45 GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATL 85
GHN I L SPD + + DG I WN + TL
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
Query: 321 LLTASGDKTCKLWDI---ETKSAV-SEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYL 376
LL+AS DKT W + + K V G+ Q + G Y L+ S +
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 377 DVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 422
DV T R + GH + ++ + + +GS D I W K
Sbjct: 93 DVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 16/219 (7%)
Query: 213 GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE--GPPFKFKM---TKQEHSRFVQA 267
G + G + + S +P +++ S D T+ ++ G KF + + + HS VQ
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 268 VRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD 327
+ G++ SA +D + L+D A+ + HK V +V + +++ S D
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRF--VGHKSDVXSVDIDKKASXIISGSRD 128
Query: 328 KTCKLWDIETKSAVSEFLMGNQVEDQQVSCL---WQGDYLLTVSLSG---FISYLDVNNP 381
KT K+W I+ + + L+G+ QV + D +T+ +G + ++N
Sbjct: 129 KTIKVWTIKGQCLAT--LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQF 186
Query: 382 STPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
I GHN I L SPD + + DG I WN
Sbjct: 187 QIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 84/210 (40%), Gaps = 15/210 (7%)
Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 189
HS V + G Y S +R+WD E + H DI D +
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDI----DKKA 119
Query: 190 MVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRP-----FRIITGSEDNTI 244
++ R++ V+ + G + + G + ++ P+ II+ D +
Sbjct: 120 SXIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXV 178
Query: 245 AVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPA 304
+ F+ + H+ + + SP G+ ASAG DG++ L++ A+ L +
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTL---S 235
Query: 305 HKGGVYAVAWKPDGTQL--LTASGDKTCKL 332
+ V+++A+ P+ L TA+G K L
Sbjct: 236 AQDEVFSLAFSPNRYWLAAATATGIKVFSL 265
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 61/154 (39%), Gaps = 6/154 (3%)
Query: 16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 75
G Y L+ S + DV T R + GH + ++ + + +GS D I W
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVXSVDIDKKASXIISGSRDKTIKVWT 135
Query: 76 AKTEYIFATLPRTQRGQPIVLGGDPKGKN---FLYTNGNSVIIR--NIENPAISDIYTEH 130
K + + L + + + K + + + GN ++ N+ I + H
Sbjct: 136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGH 195
Query: 131 SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 164
+ +N SP G IAS G++ +W+ K+
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIXLWNLAAKK 229
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 45 GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATL 85
GHN I L SPD + + DG I WN + TL
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTL 234
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 87/207 (42%), Gaps = 28/207 (13%)
Query: 235 IITGSEDNTIAVFE----------GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDG 284
+I+GS D T+ +++ G P K H+ FV + S S+ +D
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHK---ALTGHNHFVSDLALSQENCFAISSSWDK 98
Query: 285 KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEF 344
+ L+D + H+ VY+VA+ PD Q+L+A ++ KLW+I + S
Sbjct: 99 TLRLWDLRTGTTYKRF--VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSA 156
Query: 345 LMGNQVEDQQVSCLWQGDYLLTVS-LSGFISY---------LDVNNPSTPIR-VIKGHNK 393
N + VSC+ + + + + F Y L V N + IR K H
Sbjct: 157 EKENHSD--WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHES 214
Query: 394 PITALALSPDRGTVFTGSHDGFITRWN 420
+ L++SP+ + TG D + W+
Sbjct: 215 NVNHLSISPNGKYIATGGKDKKLLIWD 241
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 90/220 (40%), Gaps = 17/220 (7%)
Query: 18 YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 77
+ ++ S + D+ +T R + GH + ++A SPD + + + I WN
Sbjct: 90 FAISSSWDKTLRLWDLRTGTTYKRFV-GHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL 148
Query: 78 TEYIFATLPRTQ--------RGQPIVLGGD---PKGKNFLYTNGNSVIIRNIENPAISDI 126
E F++ + R PI+ + P F + + N I
Sbjct: 149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYT 208
Query: 127 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD 186
+ H VN SP+G YIA+G K+ IWD +N + + EF G I IA++P
Sbjct: 209 FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP-QREFDA-GSTINQIAFNPK 266
Query: 187 NQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCD 226
Q + V G ++ +F T + + +++PI +
Sbjct: 267 LQWVAV---GTDQGVKIFNLMTQSKAPVCTIEAEPITKAE 303
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 109/270 (40%), Gaps = 32/270 (11%)
Query: 178 IKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIIT 237
+ D+A S +N + ++ ++ TGT+ G + S F P +I++
Sbjct: 79 VSDLALSQEN--CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR-QILS 135
Query: 238 GSEDNTIAVFE--GPPFKFKMTKQEHSRFVQAVRYSPS----------GSHFASAGFDGK 285
+ I ++ G K+ HS +V VRYSP +FAS G+DG+
Sbjct: 136 AGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR 195
Query: 286 VFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKS-AVSEF 344
+ +++ + AH+ V ++ P+G + T DK +WDI + EF
Sbjct: 196 LKVWN---TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF 252
Query: 345 LMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVI-----------KGHNK 393
G+ + Q++ + ++ + G + + P+ I KG N
Sbjct: 253 DAGSTI--NQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNP 310
Query: 394 PITALALSPDRGTVFTGSHDGFITRWNAKT 423
T+LA + +F G DG I ++ +T
Sbjct: 311 QCTSLAWNALGKKLFAGFTDGVIRTFSFET 340
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 14/135 (10%)
Query: 39 PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGG 98
P + + GHN ++ LALS + + S D + W+ +T + Q + +
Sbjct: 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQ-SEVYSVAF 126
Query: 99 DPKGKNFLYTNGNSVI-IRNI--ENPAISDIYTEHSCAVNVAKYS----------PSGFY 145
P + L I + NI E S HS V+ +YS P Y
Sbjct: 127 SPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPY 186
Query: 146 IASGDISGKVRIWDT 160
AS G++++W+T
Sbjct: 187 FASVGWDGRLKVWNT 201
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 6/152 (3%)
Query: 273 SGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKL 332
S + + + V++++ S VS L V +V W DG+ L G+ +
Sbjct: 102 SNLNVVAVALERNVYVWNADSGS-VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDI 160
Query: 333 WDIETKSAVSEFLMGNQVEDQQVSCL-WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGH 391
+D+E+++ + + G+Q +V CL W L + S SG I + DV + I ++GH
Sbjct: 161 YDVESQTKL-RTMAGHQA---RVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGH 216
Query: 392 NKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
+ + LA D + +G +D + W+A++
Sbjct: 217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARS 248
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 71/171 (41%), Gaps = 14/171 (8%)
Query: 257 TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP 316
T Q HS V + + G AS G D V ++D S+ + + H V AVAW P
Sbjct: 212 TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS--IPKFTKTNHNAAVKAVAWCP 269
Query: 317 DGTQLLTASG---DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGF- 372
+ LL G DK W+ T + V+ G+QV S +W +S GF
Sbjct: 270 WQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQV----TSLIWSPHSKEIMSTHGFP 325
Query: 373 ---ISYLDVNNPSTPIRV-IKGHNKPITALALSPDRGTVFTGSHDGFITRW 419
+S ++ +V I H+ + ALSPD + T + D + W
Sbjct: 326 DNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 75/208 (36%), Gaps = 47/208 (22%)
Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 189
HS V + G +ASG V+IWD + I K +K +AW P
Sbjct: 216 HSSEVCGLAWRSDGLQLASGGNDNVVQIWDA--RSSIPKFTKTNHNAAVKAVAWCPWQSN 273
Query: 190 MVVVGEG-RERFGHVFMSETGTSVGEISGQSKPINSCDFKP-SRPFRIITGSEDNTIAVF 247
++ G G ++ H + + TG V + S+ + S + P S+ G DN ++++
Sbjct: 274 LLATGGGTMDKQIHFWNAATGARVNTVDAGSQ-VTSLIWSPHSKEIMSTHGFPDNNLSIW 332
Query: 248 EGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKG 307
YS SG L ++ PAH
Sbjct: 333 S---------------------YSSSG---------------------LTKQVDIPAHDT 350
Query: 308 GVYAVAWKPDGTQLLTASGDKTCKLWDI 335
V A PDG L TA+ D+ K W +
Sbjct: 351 RVLYSALSPDGRILSTAASDENLKFWRV 378
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 9 QVSCL-WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSH 67
+V CL W L + S SG I + DV + I ++GH+ + LA D + +G +
Sbjct: 178 RVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN 237
Query: 68 DGFITRWNAKT 78
D + W+A++
Sbjct: 238 DNVVQIWDARS 248
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 15/163 (9%)
Query: 274 GSHFASAGFDGKVFLYDGA--------SADLVSELGNP---AHKGGVYAVAWKPDGTQLL 322
G + S G DG + LYD + V +G H+ V V W P T +
Sbjct: 56 GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115
Query: 323 TASG-DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSG-FISYLDVNN 380
T+S DKT K+WD T F V +S + L+ V G + D+ +
Sbjct: 116 TSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175
Query: 381 PSTPIRVIKGHNKPITALALSPDRGTVF-TGSHDGFITRWNAK 422
S +++GH + I A++ SP + T S D + W+ +
Sbjct: 176 GSCS-HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 74/181 (40%), Gaps = 22/181 (12%)
Query: 259 QEHSRFVQAVRYSPSGSH-FASAGFDGKVFLYD--GASADLVS------------ELGNP 303
Q H + + AV +SP + A+A D +V L+D AS L++ E N
Sbjct: 183 QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANT 242
Query: 304 AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET--KSAVSEFLMGNQVEDQ---QVSCL 358
AH G V + + DG LLT D +LW+ + V+ + N + VSC
Sbjct: 243 AHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCG 302
Query: 359 WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITR 418
+++ S Y + I ++KGH K + + +++GS D I
Sbjct: 303 CSSEFVFVPYGSTIAVYTVYSGEQ--ITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILA 360
Query: 419 W 419
W
Sbjct: 361 W 361
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 81/210 (38%), Gaps = 33/210 (15%)
Query: 42 VIKGHNKPITALALSPDRGTVF-TGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDP 100
+++GH + I A++ SP + T S D + W+ R G I L
Sbjct: 181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDV----------RRASGCLITLD-QH 229
Query: 101 KGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDT 160
GK ++ A+ T H+ VN ++ G ++ + ++R+W++
Sbjct: 230 NGK---------------KSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNS 274
Query: 161 VNKEHILKNEFHPIGGPIKDIAWSPD---NQRMVVVGEGRERFGHVFMSETGTSVGEISG 217
N E+ L N K + ++ + V V G V+ +G + + G
Sbjct: 275 SNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIA--VYTVYSGEQITMLKG 332
Query: 218 QSKPINSCDFKPSRPFRIITGSEDNTIAVF 247
K ++ C F+ S + +GS D I +
Sbjct: 333 HYKTVDCCVFQ-SNFQELYSGSRDCNILAW 361
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 87/213 (40%), Gaps = 22/213 (10%)
Query: 145 YIASGDISGKVRIWD--TVNKEHIL---KNEFHPIGGPIKDIAWSPDNQRMV--VVGEGR 197
Y+ S + +WD KEH + KN F ++D+AW ++ + V + +
Sbjct: 198 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 257
Query: 198 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT 257
+ T + + +N F P F + TGS D T+A+++ K K+
Sbjct: 258 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 317
Query: 258 KQE-HSRFVQAVRYSPSGSH-FASAGFDGKVFLYD-----GASADLVSELGNP------- 303
E H + V++SP AS+G D ++ ++D + +E G P
Sbjct: 318 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 377
Query: 304 AHKGGVYAVAWKPDGTQLL-TASGDKTCKLWDI 335
H + +W P+ ++ + S D ++W +
Sbjct: 378 GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 87/213 (40%), Gaps = 22/213 (10%)
Query: 145 YIASGDISGKVRIWD--TVNKEHIL---KNEFHPIGGPIKDIAWSPDNQRMV--VVGEGR 197
Y+ S + +WD KEH + KN F ++D+AW ++ + V + +
Sbjct: 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 255
Query: 198 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT 257
+ T + + +N F P F + TGS D T+A+++ K K+
Sbjct: 256 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 315
Query: 258 KQE-HSRFVQAVRYSPSGSH-FASAGFDGKVFLYD-----GASADLVSELGNP------- 303
E H + V++SP AS+G D ++ ++D + +E G P
Sbjct: 316 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 375
Query: 304 AHKGGVYAVAWKPDGTQLL-TASGDKTCKLWDI 335
H + +W P+ ++ + S D ++W +
Sbjct: 376 GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 87/213 (40%), Gaps = 22/213 (10%)
Query: 145 YIASGDISGKVRIWD--TVNKEHIL---KNEFHPIGGPIKDIAWSPDNQRMV--VVGEGR 197
Y+ S + +WD KEH + KN F ++D+AW ++ + V + +
Sbjct: 200 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 259
Query: 198 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT 257
+ T + + +N F P F + TGS D T+A+++ K K+
Sbjct: 260 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 319
Query: 258 KQE-HSRFVQAVRYSPSGSH-FASAGFDGKVFLYD-----GASADLVSELGNP------- 303
E H + V++SP AS+G D ++ ++D + +E G P
Sbjct: 320 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 379
Query: 304 AHKGGVYAVAWKPDGTQLL-TASGDKTCKLWDI 335
H + +W P+ ++ + S D ++W +
Sbjct: 380 GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 96/257 (37%), Gaps = 47/257 (18%)
Query: 115 IRNIENPAISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEHILKNEFHP 173
+RN I+D+ VA P G +AS KV IW N +E
Sbjct: 42 VRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAG 101
Query: 174 IGGPIKDIAWSPDNQRMVVV--------------GEGRERFGHVFMSET----------- 208
+ + W+P + +++ GEG+ + + T
Sbjct: 102 HDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPA 161
Query: 209 ---GTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF---EGPPFKFKMTKQEHS 262
G+ + SGQ KP+ R +G DN I ++ E +K + + HS
Sbjct: 162 VVPGSLIDHPSGQ---------KPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHS 212
Query: 263 RFVQAVRYSPS----GSHFASAGFDGKVFLY--DGASADLVSELGNPAHKGGVYAVAWKP 316
+V+ V ++PS S AS DG+VF++ D AS++ S V+ V+W
Sbjct: 213 DWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSI 272
Query: 317 DGTQLLTASGDKTCKLW 333
L + GD LW
Sbjct: 273 TANILAVSGGDNKVTLW 289
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 86/219 (39%), Gaps = 26/219 (11%)
Query: 123 ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIA 182
I+ + T H ++ A+ G +A+ V+I+D N IL + GP+ +A
Sbjct: 5 INTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVA 64
Query: 183 WSPDNQRMVVVGEGRERFGHVFMSETGT--SVGEISGQSKPINSCDFKPSRPFRII-TGS 239
W+ ++ +R ++ E GT E +G +NS + P I+ GS
Sbjct: 65 WAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGS 124
Query: 240 EDNTIAVF----EGPPFKFKMTKQEHSRFVQAVRYSPS---GS--------------HFA 278
D I++ EG ++ K H+ AV ++P+ GS FA
Sbjct: 125 SDGAISLLTYTGEG-QWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFA 183
Query: 279 SAGFDGKVFLY-DGASADLVSELGNPAHKGGVYAVAWKP 316
S G D + L+ + E AH V VAW P
Sbjct: 184 SGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAP 222
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 21/186 (11%)
Query: 119 ENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK-EHILKNEFHPIGGP 177
E P I E A VA +S G YI +G GK+ +D N E++ + H
Sbjct: 163 EEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE--KS 220
Query: 178 IKDIAWSPDNQRMVVVGEGRERFGHVFMSETGT-SVGEISGQSKPINSCDFKPSRPFRII 236
I D+ +SPD + R + F+ + T V + P+N+ P + F I+
Sbjct: 221 ISDMQFSPDLTYFIT----SSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIIL 276
Query: 237 TGSED----NTIAVFEG---PPFKFKMTKQEHSRF------VQAVRYSPSGSHFASAGFD 283
G ++ T + EG F K+ ++E R + V SP G+ +AS G D
Sbjct: 277 GGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGED 336
Query: 284 GKVFLY 289
G + L+
Sbjct: 337 GFIRLH 342
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 62/159 (38%), Gaps = 19/159 (11%)
Query: 15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHD--GFIT 72
+G Y++ G IS DV+N + I H K I+ + SPD T S D F+
Sbjct: 186 KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLV 245
Query: 73 RWNA-------KTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISD 125
+ +T+ T T + I+LGG + K+ T+ N E
Sbjct: 246 DVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANE---GKFEARFYHK 302
Query: 126 IYTE-------HSCAVNVAKYSPSGFYIASGDISGKVRI 157
I+ E H +N SP G ASG G +R+
Sbjct: 303 IFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRL 341
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 86/218 (39%), Gaps = 23/218 (10%)
Query: 214 EISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPS 273
+++G +P+ + + + S+D++ +V+ + T H+ + ++
Sbjct: 27 KLTGHERPLTQVKYNKEGDL-LFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF 85
Query: 274 GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCK-- 331
+ + D + L+D ++ V+ +P V V + P G L A D K
Sbjct: 86 TKYCVTGSADYSIKLWDVSNGQCVATWKSPV---PVKRVEFSPCGNYFL-AILDNVMKNP 141
Query: 332 ----LWDIETKSAVSEF----------LMGNQVEDQQVSCLW--QGDYLLTVSLSGFISY 375
+++IE SA E ++ ++ D W +G Y++ G IS
Sbjct: 142 GSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISK 201
Query: 376 LDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHD 413
DV+N + I H K I+ + SPD T S D
Sbjct: 202 YDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD 239
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 24/164 (14%)
Query: 270 YSPSGSHFASAGFDGKVFLYDGAS-ADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK 328
+S G + + DGK+ YD ++ + V + H+ + + + PD T +T+S D
Sbjct: 183 WSTKGKYIIAGHKDGKISKYDVSNNYEYVDSI--DLHEKSISDMQFSPDLTYFITSSRDT 240
Query: 329 TCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPST----- 383
L D+ T + ++ + ++ L + + L G DV S
Sbjct: 241 NSFLVDVSTLQVLKKYETDCPLNTAVITPLKE-----FIILGGGQEAKDVTTTSANEGKF 295
Query: 384 -----------PIRVIKGHNKPITALALSPDRGTVFTGSHDGFI 416
I ++GH P+ +A+SP + +G DGFI
Sbjct: 296 EARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFI 339
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 305 HKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAV 341
H G V V W DG+++ TAS DKT K+WD+ + A+
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI 121
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 258 KQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW--K 315
+Q H+ V V +S GS +A D ++D +S + H V + W
Sbjct: 82 QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA---QHDAPVKTIHWIKA 138
Query: 316 PDGTQLLTASGDKTCKLWDIETKSAV 341
P+ + ++T S DKT K WD + + +
Sbjct: 139 PNYSCVMTGSWDKTLKFWDTRSSNPM 164
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 141 PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF 200
P F IA G + VR W+ + + GP+ D+ WS D + V ++
Sbjct: 53 PGNFLIA-GSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSK--VFTASCDKT 109
Query: 201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFR-IITGSEDNTIAVFE 248
++ + ++ +I+ P+ + + + + ++TGS D T+ ++
Sbjct: 110 AKMWDLSSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 106/261 (40%), Gaps = 23/261 (8%)
Query: 2 GNQVEDQQVSCLWQGDYLLTVSL------------SGFISYLDVNNPSTPIRVIKGHNKP 49
GN+ Q+ CL + +Y+ + L + +S D+ P+ I+ + P
Sbjct: 83 GNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP 142
Query: 50 IT-ALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYT 108
ALA+SPD F+ DG I W+ + + G + + K L+T
Sbjct: 143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK--LWT 200
Query: 109 NGNSVIIRNIENPAISDIYT-EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL 167
G +R+ + + + + + Y P+G ++A G S V + VNK
Sbjct: 201 GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLH-VNKPD-- 257
Query: 168 KNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDF 227
K + H + + ++ + V G++ + + + G S+ + S +S + SCD
Sbjct: 258 KYQLHLHESCVLSLKFAYCGKWF--VSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDI 314
Query: 228 KPSRPFRIITGSEDNTIAVFE 248
+ I+TGS D V+E
Sbjct: 315 SVDDKY-IVTGSGDKKATVYE 334
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 11/164 (6%)
Query: 222 INSCDFKPSRPFRIITGSEDNTIAVFE----GPPFKFKMTKQEHSRFVQAVRYSPSGSHF 277
I SC P +I G E +T+++++ P K ++T + + A+ SP
Sbjct: 100 IRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI--SPDSKVC 156
Query: 278 ASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET 337
S DG + ++D + LV + H G + DGT+L T D T + WD+
Sbjct: 157 FSCCSDGNIAVWDLHNQTLVRQF--QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE 214
Query: 338 KSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNP 381
+ + +Q+ + G++L S + L VN P
Sbjct: 215 GRQLQQHDFTSQIF--SLGYCPTGEWLAVGMESSNVEVLHVNKP 256
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 6/177 (3%)
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYD---GASADLVSELGNPAHK 306
P ++ H V AV S H + G G V ++D + VS+L
Sbjct: 39 PRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRD 97
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSA-VSEFLMGNQVEDQQVSCLWQGDYLL 365
+ + PDG L+ T +WD+ + + L + ++
Sbjct: 98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCF 157
Query: 366 TVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 422
+ G I+ D++N T +R +GH + + +S D ++TG D + W+ +
Sbjct: 158 SCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 11/135 (8%)
Query: 296 LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLM-------GN 348
L+ L AHK + +VAW+P + L S D T +W E +SA F M G+
Sbjct: 48 LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE-ESADRTFEMDLLAIIEGH 106
Query: 349 QVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTP---IRVIKGHNKPITALALSPDRG 405
+ E + V+ G YL T S + + + I V++ H++ + + P
Sbjct: 107 ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA 166
Query: 406 TVFTGSHDGFITRWN 420
+ + S+D + W
Sbjct: 167 LLASSSYDDTVRIWK 181
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 90/227 (39%), Gaps = 25/227 (11%)
Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDT--VNKEHILKNEFHPIGGPIKDIAWSPDN 187
H V +S G+Y+A+ V IW+T +E+ + +K + W P
Sbjct: 106 HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-- 163
Query: 188 QRMVVVGEGRERFGHVF--MSETGTSVGEISGQSKPINSCDF-KPSRPFRIITGSEDNTI 244
++ + ++ + V ++G + S DF K FR+ +GS+D+T+
Sbjct: 164 SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTV 223
Query: 245 AVFEGPPFKFKMTKQE----------HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASA 294
V++ + +QE H R V V + +G AS G DG + +Y+
Sbjct: 224 RVWKYMG-DDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGL-IASVGADGVLAVYEEVDG 281
Query: 295 DLVSELGNPAHKGGVY---AVAW-KPDGTQLLTASGDK-TCKLWDIE 336
+ A GVY V W + +G +L GD W +E
Sbjct: 282 EW-KVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 76/176 (43%), Gaps = 19/176 (10%)
Query: 178 IKDIAWSPDNQRMV--VVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRI 235
++D+AW ++ + V + + + T + + +N F P F +
Sbjct: 232 VEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFIL 291
Query: 236 ITGSEDNTIAVFEGPPFKFKM-TKQEHSRFVQAVRYSPSGSH-FASAGFDGKVFLYDGA- 292
TGS D T+A+++ K K+ T + H + V +SP AS+G D ++ ++D +
Sbjct: 292 ATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351
Query: 293 -----SADLVSELGNP-------AHKGGVYAVAWKPDGTQLL-TASGDKTCKLWDI 335
SA+ +E G P H + +W P+ ++ + S D ++W +
Sbjct: 352 IGEEQSAE-DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/182 (18%), Positives = 75/182 (41%), Gaps = 15/182 (8%)
Query: 251 PFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVY 310
PF + + + V + +S G+ + +G++ L++ A L++ L H+ +
Sbjct: 97 PFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGA-LLNVLN--FHRAPIV 153
Query: 311 AVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLM----GNQVEDQQ--------VSCL 358
+V W DGT +++ + LW++ + + + F + G+ + + V
Sbjct: 154 SVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVE 213
Query: 359 WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITR 418
W D + ++ TP + GH+ PI+ L + + + S DG +
Sbjct: 214 WVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRI 273
Query: 419 WN 420
W+
Sbjct: 274 WH 275
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/266 (20%), Positives = 104/266 (39%), Gaps = 36/266 (13%)
Query: 109 NGNSVIIRNIENP---------AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 159
+GNS I+ +EN A+ ++ H + K++ G +I S D+ +W+
Sbjct: 119 DGNS-IVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWN 177
Query: 160 TVNKEHILKNEFHPIGGPI-------------KDIAWSPDNQRMVVVGEGRERFGHVFMS 206
++ + E GG D+ W D+ + V+ G F V+
Sbjct: 178 VISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEW-VDDDKFVIPGPKGAIF--VYQI 234
Query: 207 ETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQ 266
T G++ G PI+ +F + +++ S+D T+ ++ G + HS+ +
Sbjct: 235 TEKTPTGKLIGHHGPISVLEFNDTNKL-LLSASDDGTLRIWHGGNGNSQNCFYGHSQSIV 293
Query: 267 AVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL---GNPAHKGGVYAVAWKPDGTQLLT 323
+ + S DG V L+ L++ G P G + DG +
Sbjct: 294 SASW-VGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRI-----SQDGQKYAV 347
Query: 324 ASGDKTCKLWDIETKSAVSEFLMGNQ 349
A D ++D++ ++ S L GN+
Sbjct: 348 AFMDGQVNVYDLKKLNSKSRSLYGNR 373
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 178 IKDIAWSPDNQRMV--VVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRI 235
++D+AW ++ + V + + + T + + +N F P F +
Sbjct: 232 VEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFIL 291
Query: 236 ITGSEDNTIAVFEGPPFKFKM-TKQEHSRFVQAVRYSPSGSH-FASAGFDGKVFLYD 290
TGS D T+A+++ K K+ T + H + V +SP AS+G D ++ ++D
Sbjct: 292 ATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 7/152 (4%)
Query: 277 FASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIE 336
+ G DG++ L+ + V + N A ++AV + ++LT + K+WD
Sbjct: 163 IVTVGEDGRINLFRADHKEAVRTIDN-ADSSTLHAVTFL-RTPEILTVNSIGQLKIWDFR 220
Query: 337 TKSAVSEFLMGNQVEDQQVSCL----WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHN 392
+ ++ + + C+ Q + T G +S DV + P+ ++K H
Sbjct: 221 QQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHE 280
Query: 393 KPITALALSPDRGT-VFTGSHDGFITRWNAKT 423
+ + P +FT S DG + W+A T
Sbjct: 281 AEMWEVHFHPSNPEHLFTCSEDGSLWHWDAST 312
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 26 GFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGT-VFTGSHDGFITRWNAKTE 79
G +S DV + P+ ++K H + + P +FT S DG + W+A T+
Sbjct: 259 GMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTD 313
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 15/136 (11%)
Query: 215 ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE-HSRFVQAVRYSPS 273
+ + +N F P F + TGS D T+A+++ K K+ E H + V++SP
Sbjct: 269 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 328
Query: 274 GSH-FASAGFDGKVFLYD-----GASADLVSELGNP-------AHKGGVYAVAWKPDGTQ 320
AS+G D ++ ++D + +E G P H + +W P+
Sbjct: 329 NETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 388
Query: 321 LL-TASGDKTCKLWDI 335
++ + S D ++W +
Sbjct: 389 VICSVSEDNIMQVWQM 404
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 23/153 (15%)
Query: 235 IITGSEDNTIAVFE----GPPFKFKMTKQ--EHSRFVQAVRYSPSGSHFASAGFD---GK 285
I TG + T+ + E P + F+ +S +++V++SP GS A A G
Sbjct: 210 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 269
Query: 286 VFLYDGASADLV-----------SELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWD 334
+ LY+ + + + LG AH V ++++ G L +A D + WD
Sbjct: 270 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 329
Query: 335 IETKSAVSEFLMGN---QVEDQQVSCLWQGDYL 364
++TK ++ M ++E+ ++ GD L
Sbjct: 330 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSL 362
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH 172
HS V ++ SG + S GK+R WD KE I H
Sbjct: 300 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 342
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 84/222 (37%), Gaps = 38/222 (17%)
Query: 143 GFYIASGDISGKVRIWDTVNKE--HILKNEFHPIGGPIKDIAWSPDNQR-MVVVGEGRER 199
G +AS GKV IW N I + H + + W+P M++V +
Sbjct: 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVH--SASVNSVQWAPHEYGPMLLVASSDGK 124
Query: 200 FGHVFMSETGT-SVGEISGQSKPINSCDFKP--------------SRPFRIITGSEDNTI 244
V E GT S I + +NS + P SR F +TG DN +
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF--VTGGADNLV 182
Query: 245 AVF----EGPPFKFKMTKQEHSRFVQAVRYSPS---GSHFASAGFDGKVFLYDGASAD-- 295
++ + + + T + HS +V+ V +SP+ S+ AS D ++ +
Sbjct: 183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242
Query: 296 ----LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLW 333
L+ E P ++ +W G L + GD LW
Sbjct: 243 WKKTLLKEEKFP---DVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 59/298 (19%), Positives = 107/298 (35%), Gaps = 61/298 (20%)
Query: 16 GDYLLTVSLSGFISYLDVNNPSTP-IRVIKGHNKPITALALS-PDRGTVFTG-SHDGFIT 72
G + T S I +V + I + GH P+ + + P GT+ S+DG +
Sbjct: 21 GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80
Query: 73 RW---NAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLY--TNGNSVIIRNIENPAISDIY 127
W N + I + + G L ++G ++ EN S I
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPII 140
Query: 128 TE-HSCAVNVAKYSPSGFY-------------IASGDISGKVRIW--DTVNKEHILKNEF 171
+ H+ VN A ++P+ +G V+IW ++ + ++L++
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200
Query: 172 HPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSR 231
++D+AWSP V + SV S+
Sbjct: 201 EGHSDWVRDVAWSPT----------------VLLRSYMASV-----------------SQ 227
Query: 232 PFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLY 289
I ++DN +GP K + +++ + +S SG+ A +G D KV L+
Sbjct: 228 DRTCIIWTQDNE----QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 23/153 (15%)
Query: 235 IITGSEDNTIAVFE----GPPFKFKMTKQ--EHSRFVQAVRYSPSGSHFASAGFD---GK 285
I TG + T+ + E P + F+ +S +++V++SP GS A A G
Sbjct: 200 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 259
Query: 286 VFLYDGASADLV-----------SELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWD 334
+ LY+ + + + LG AH V ++++ G L +A D + WD
Sbjct: 260 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319
Query: 335 IETKSAVSEFLMGN---QVEDQQVSCLWQGDYL 364
++TK ++ M ++E+ ++ GD L
Sbjct: 320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSL 352
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH 172
HS V ++ SG + S GK+R WD KE I H
Sbjct: 290 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 332
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 103/261 (39%), Gaps = 50/261 (19%)
Query: 94 IVLGGDPKGKNFLYTNGNSVIIRNIENPAISDI--YTEHSCAVNVAKY-SPSGFYIASGD 150
I+ G G LY+ N N AI+ + ++ HS +V K+ + +ASG
Sbjct: 81 IIAGALDNGSLELYS-------TNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGG 133
Query: 151 ISGKVRIWDTVNKEHILKNEFHPI--GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSET 208
+G++ IWD +NK + + P+ G + + V+ + HVF S
Sbjct: 134 NNGEIFIWD-MNKCTESPSNYTPLTPGQSMSSV-------DEVISLAWNQSLAHVFASAG 185
Query: 209 GTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAV 268
++ I D K + ++ + N+ KQ+ + V
Sbjct: 186 SSNFASI---------WDLKAKKEVIHLSYTSPNS------------GIKQQ----LSVV 220
Query: 269 RYSPSGSHFASAGF----DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTA 324
+ P S + D + ++D +A+ + N H+ G+ ++ W LL +
Sbjct: 221 EWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLS 280
Query: 325 SG-DKTCKLWDIETKSAVSEF 344
SG D T LW+ E+ +S+F
Sbjct: 281 SGRDNTVLLWNPESAEQLSQF 301
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 84/222 (37%), Gaps = 38/222 (17%)
Query: 143 GFYIASGDISGKVRIWDTVNKE--HILKNEFHPIGGPIKDIAWSPDNQ-RMVVVGEGRER 199
G +AS GKV IW N I + H + + W+P +++V +
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVH--SASVNSVQWAPHEYGPLLLVASSDGK 124
Query: 200 FGHVFMSETGT-SVGEISGQSKPINSCDFKP--------------SRPFRIITGSEDNTI 244
V E GT S I + +NS + P SR F +TG DN +
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF--VTGGADNLV 182
Query: 245 AVF----EGPPFKFKMTKQEHSRFVQAVRYSPS---GSHFASAGFDGKVFLYDGASAD-- 295
++ + + + T + HS +V+ V +SP+ S+ AS D ++ +
Sbjct: 183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 242
Query: 296 ----LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLW 333
L+ E P ++ +W G L + GD LW
Sbjct: 243 WKKTLLKEEKFP---DVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 84/222 (37%), Gaps = 38/222 (17%)
Query: 143 GFYIASGDISGKVRIWDTVNKE--HILKNEFHPIGGPIKDIAWSPDNQR-MVVVGEGRER 199
G +AS GKV IW N I + H + + W+P +++V +
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVH--SASVNSVQWAPHEYGPLLLVASSDGK 124
Query: 200 FGHVFMSETGT-SVGEISGQSKPINSCDFKP--------------SRPFRIITGSEDNTI 244
V E GT S I + +NS + P SR F +TG DN +
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF--VTGGADNLV 182
Query: 245 AVF----EGPPFKFKMTKQEHSRFVQAVRYSPS---GSHFASAGFDGKVFLYDGASAD-- 295
++ + + + T + HS +V+ V +SP+ S+ AS D ++ +
Sbjct: 183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 242
Query: 296 ----LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLW 333
L+ E P ++ +W G L + GD LW
Sbjct: 243 WKKTLLKEEKFP---DVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 60/298 (20%), Positives = 107/298 (35%), Gaps = 61/298 (20%)
Query: 16 GDYLLTVSLSGFISYLDVNNPSTP-IRVIKGHNKPITALALS-PDRGTVFTG-SHDGFIT 72
G L T S I +V + I + GH P+ + + P GT+ S+DG +
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 73 RW---NAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLY--TNGNSVIIRNIENPAISDIY 127
W N + I + + G L ++G ++ EN S I
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 140
Query: 128 TE-HSCAVNVAKYSPSGFY-------------IASGDISGKVRIW--DTVNKEHILKNEF 171
+ H+ VN A ++P+ +G V+IW ++ + ++L++
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200
Query: 172 HPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSR 231
++D+AWSP V + SV S+
Sbjct: 201 EGHSDWVRDVAWSPT----------------VLLRSYLASV-----------------SQ 227
Query: 232 PFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLY 289
I ++DN +GP K + +++ + +S SG+ A +G D KV L+
Sbjct: 228 DRTCIIWTQDNE----QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 41/201 (20%), Positives = 79/201 (39%), Gaps = 9/201 (4%)
Query: 129 EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP--D 186
EH V+ SG SG +++WD + ++ + + + +A SP D
Sbjct: 125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA--QQVVLSSYRAHAAQVTCVAASPHKD 182
Query: 187 NQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAV 246
+ + + R + + +G + P S + P + + G E+ T+++
Sbjct: 183 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLP-TSLAWHPQQSEVFVFGDENGTVSL 241
Query: 247 FEGPPFKFKMTKQEHSRFVQAVRYSPSGSHF-ASAGFDGKVFLYDGASADLVSELGNPAH 305
+ ++ HS+ V + +SP F AS D + + D + ++L + AH
Sbjct: 242 VDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL---FRSQAH 298
Query: 306 KGGVYAVAWKPDGTQLLTASG 326
+ V W P LLT G
Sbjct: 299 RDFVRDATWSPLNHSLLTTVG 319
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Query: 234 RIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSP-SGSHFASAGFDGKVFLYDGA 292
+ ++GS+D I V++ + + H+ V V SP S F S D ++ L+D
Sbjct: 141 QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR 200
Query: 293 SADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVED 352
S++G A ++AW P +++ GD+ + ++TKS + ++ + V
Sbjct: 201 CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVF-GDENGTVSLVDTKS--TSCVLSSAVHS 257
Query: 353 QQVS 356
Q V+
Sbjct: 258 QCVT 261
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 255 KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW 314
K K EH V V SG+ S D + ++D A ++S AH V VA
Sbjct: 120 KFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYR--AHAAQVTCVAA 177
Query: 315 KP-DGTQLLTASGDKTCKLWDIETKSAVSEF 344
P + L+ S D LWD S+
Sbjct: 178 SPHKDSVFLSCSEDNRILLWDTRCPKPASQI 208
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 14/136 (10%)
Query: 296 LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQV 355
+VS+ H V V+ GTQ ++ S D K+WD+ + +S + + QV
Sbjct: 117 IVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY----RAHAAQV 172
Query: 356 SCLWQGDY----LLTVSLSGFISYLDVNNPSTPIRVIKGHNKP---ITALALSPDRGTVF 408
+C+ + L+ S I D P ++ G + P T+LA P + VF
Sbjct: 173 TCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI--GCSAPGYLPTSLAWHPQQSEVF 230
Query: 409 T-GSHDGFITRWNAKT 423
G +G ++ + K+
Sbjct: 231 VFGDENGTVSLVDTKS 246
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 84/222 (37%), Gaps = 38/222 (17%)
Query: 143 GFYIASGDISGKVRIWDTVNKE--HILKNEFHPIGGPIKDIAWSPDNQR-MVVVGEGRER 199
G +AS GKV IW N I + H + + W+P +++V +
Sbjct: 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVH--SASVNSVQWAPHEYGPLLLVASSDGK 126
Query: 200 FGHVFMSETGT-SVGEISGQSKPINSCDFKP--------------SRPFRIITGSEDNTI 244
V E GT S I + +NS + P SR F +TG DN +
Sbjct: 127 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF--VTGGADNLV 184
Query: 245 AVF----EGPPFKFKMTKQEHSRFVQAVRYSPS---GSHFASAGFDGKVFLYDGASAD-- 295
++ + + + T + HS +V+ V +SP+ S+ AS D ++ +
Sbjct: 185 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 244
Query: 296 ----LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLW 333
L+ E P ++ +W G L + GD LW
Sbjct: 245 WKKTLLKEEKFP---DVLWRASWSLSGNVLALSGGDNKVTLW 283
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 74/194 (38%), Gaps = 24/194 (12%)
Query: 16 GDYLLTVSLSGFISYLDVNNPSTP-IRVIKGHNKPITALALS-PDRGTVFTG-SHDGFIT 72
G L T S I +V + I + GH P+ + + P GT+ S+DG +
Sbjct: 23 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82
Query: 73 RW---NAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLY--TNGNSVIIRNIENPAISDIY 127
W N + I + + G L ++G ++ EN S I
Sbjct: 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 142
Query: 128 TE-HSCAVNVAKYSPSGF-------------YIASGDISGKVRIW--DTVNKEHILKNEF 171
+ H+ VN A ++P+ +G V+IW ++ + ++L++
Sbjct: 143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 202
Query: 172 HPIGGPIKDIAWSP 185
++D+AWSP
Sbjct: 203 EGHSDWVRDVAWSP 216
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 81/211 (38%), Gaps = 21/211 (9%)
Query: 154 KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVG 213
+V I++ + + +E G + I W+PD+ R+V G R + T
Sbjct: 31 EVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL 90
Query: 214 EISGQSKPINSCDFKPS-RPFRIITGSEDNTIAVFEGPP--FKFKMTKQEHSRFVQAVRY 270
I ++ + P+ + F + +GS +I FE + K K+ V ++ +
Sbjct: 91 VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW 150
Query: 271 SPSGSHFASAGFDGKVFLYDGASADLVSELGNP-----------------AHKGGVYAVA 313
P+ A+ D K ++ A V E P + G V+ V
Sbjct: 151 HPNSVLLAAGSCDFKCRIF-SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC 209
Query: 314 WKPDGTQLLTASGDKTCKLWDIETKSAVSEF 344
+ +G+++ S D T L D + K AV+
Sbjct: 210 FSANGSRVAWVSHDSTVCLADADKKMAVATL 240
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 50/261 (19%), Positives = 95/261 (36%), Gaps = 26/261 (9%)
Query: 177 PIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRII 236
PI AW+ D ++ + E + V E+ + + D+ P +
Sbjct: 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVT 69
Query: 237 TGSEDNT-IAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKV--FLYDGAS 293
G++ N + +G +K + +R + VR++P+ FA G +V Y
Sbjct: 70 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFA-VGSGSRVISICYFEQE 128
Query: 294 AD--LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLW-----DIETKSAV----S 342
D + + P + V ++ W P+ L S D C+++ ++E + A S
Sbjct: 129 NDWWVCKHIKKPI-RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGS 187
Query: 343 EFLMGNQVEDQQVSCLW--------QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKP 394
+ G + + SC W G + VS + D + + + P
Sbjct: 188 KMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK-KMAVATLASETLP 246
Query: 395 ITALALSPDRGTVFTGSHDGF 415
+ A+ + V G HD F
Sbjct: 247 LLAVTFITESSLVAAG-HDCF 266
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 17/153 (11%)
Query: 188 QRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPS--RPFRII-TGSEDNTI 244
++ ++ G++ HV ++ G I S + PS R +++I TG +D I
Sbjct: 191 EQAIIYQRGKDGKLHV--------AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRI 242
Query: 245 AVFE----GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL 300
+F+ P + + + F + + + + K L +L+SE
Sbjct: 243 RIFKITEKLSPLASEESLTNSNXFDNSADVDXDAQGRSDSNTEEKAELQSNLQVELLSEH 302
Query: 301 GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLW 333
+ H G V++V+W GT L +A D +LW
Sbjct: 303 DD--HNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 261 HSRFVQAVRYSPSGSHFASAGFDG--KVFLYDGASADLVSELGNPAHKGGVYAVAW-KPD 317
H V V Y G H A+ D KVF D +++ AH + A+ W P+
Sbjct: 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE 69
Query: 318 -GTQLLTASGDKTCKLWD 334
G + +AS DKT KLW+
Sbjct: 70 YGRIIASASYDKTVKLWE 87
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 50/261 (19%), Positives = 95/261 (36%), Gaps = 26/261 (9%)
Query: 177 PIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRII 236
PI AW+ D ++ + E + V E+ + + D+ P +
Sbjct: 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 69
Query: 237 TGSEDNT-IAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKV--FLYDGAS 293
G++ N + +G +K + +R + VR++P+ FA G +V Y
Sbjct: 70 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFA-VGSGSRVISICYFEQE 128
Query: 294 AD--LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLW-----DIETKSAV----S 342
D + + P + V ++ W P+ L S D C+++ ++E + A S
Sbjct: 129 NDWWVCKHIKKPI-RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGS 187
Query: 343 EFLMGNQVEDQQVSCLW--------QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKP 394
+ G + + SC W G + VS + D + + + P
Sbjct: 188 KMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK-KMAVATLASETLP 246
Query: 395 ITALALSPDRGTVFTGSHDGF 415
+ A+ + V G HD F
Sbjct: 247 LLAVTFITESSLVAAG-HDCF 266
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 81/211 (38%), Gaps = 21/211 (9%)
Query: 154 KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVG 213
+V I++ + + +E G + + W+PD+ R+V G R + T
Sbjct: 31 EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL 90
Query: 214 EISGQSKPINSCDFKPS-RPFRIITGSEDNTIAVFEGPP--FKFKMTKQEHSRFVQAVRY 270
I ++ + P+ + F + +GS +I FE + K K+ V ++ +
Sbjct: 91 VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW 150
Query: 271 SPSGSHFASAGFDGKVFLYDGASADLVSELGNP-----------------AHKGGVYAVA 313
P+ A+ D K ++ A V E P + G V+ V
Sbjct: 151 HPNSVLLAAGSCDFKCRIF-SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC 209
Query: 314 WKPDGTQLLTASGDKTCKLWDIETKSAVSEF 344
+ +G+++ S D T L D + K AV+
Sbjct: 210 FSANGSRVAWVSHDSTVCLADADKKMAVATL 240
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 17/153 (11%)
Query: 188 QRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPS--RPFRII-TGSEDNTI 244
++ ++ G++ HV ++ G I S + PS R +++I TG +D I
Sbjct: 189 EQAIIYQRGKDGKLHV--------AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRI 240
Query: 245 AVFE----GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL 300
+F+ P + + + F + + + + K L +L+SE
Sbjct: 241 RIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH 300
Query: 301 GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLW 333
+ H G V++V+W GT L +A D +LW
Sbjct: 301 DD--HNGEVWSVSWNLTGTILSSAGDDGKVRLW 331
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 261 HSRFVQAVRYSPSGSHFASAGFDG--KVFLYDGASADLVSELGNPAHKGGVYAVAW-KPD 317
H V V Y G H A+ D KVF D +++ AH + A+ W P+
Sbjct: 8 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE 67
Query: 318 -GTQLLTASGDKTCKLWD 334
G + +AS DKT KLW+
Sbjct: 68 YGRIIASASYDKTVKLWE 85
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 17/153 (11%)
Query: 188 QRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPS--RPFRII-TGSEDNTI 244
++ ++ G++ HV ++ G I S + PS R +++I TG +D I
Sbjct: 191 EQAIIYQRGKDGKLHV--------AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRI 242
Query: 245 AVFE----GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL 300
+F+ P + + + F + + + + K L +L+SE
Sbjct: 243 RIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH 302
Query: 301 GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLW 333
+ H G V++V+W GT L +A D +LW
Sbjct: 303 DD--HNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 261 HSRFVQAVRYSPSGSHFASAGFDG--KVFLYDGASADLVSELGNPAHKGGVYAVAW-KPD 317
H V V Y G H A+ D KVF D +++ AH + A+ W P+
Sbjct: 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE 69
Query: 318 -GTQLLTASGDKTCKLWD 334
G + +AS DKT KLW+
Sbjct: 70 YGRIIASASYDKTVKLWE 87
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 63/135 (46%), Gaps = 9/135 (6%)
Query: 245 AVFEGPPFKFKMTKQEHSRFVQAVRYSPSGS------HFASAGFDGKVFLYDGASADLVS 298
A +G F F ++ S+ ++ Y+ + F +G + + D ++ +L
Sbjct: 71 ARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLD-SNFNLQR 129
Query: 299 ELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCL 358
E+ + AH + + + P G L+++S D K+W ++ S L+G++ ++ +
Sbjct: 130 EI-DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN-PRTLIGHRATVTDIAII 187
Query: 359 WQGDYLLTVSLSGFI 373
+G +L+ SL G I
Sbjct: 188 DRGRNVLSASLDGTI 202
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 66/161 (40%), Gaps = 19/161 (11%)
Query: 270 YSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKT 329
+ GSH A DG FL++ D S++ A V + L T GD
Sbjct: 61 FEKVGSHLYKARLDGHDFLFNTIIRD-GSKMLKRADYTAVDTAKLQMRRFILGTTEGD-- 117
Query: 330 CKLWDIETKSAVSEFLMGNQVEDQQVSCLWQ------GDYLLTVSLSGFISYLDVNNPST 383
K+ D S F + +++ VS + + G+ L++ S + V + S
Sbjct: 118 IKVLD-------SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 170
Query: 384 PIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNAKT 423
P R + GH +T +A+ DRG V + S DG I W T
Sbjct: 171 P-RTLIGHRATVTDIAI-IDRGRNVLSASLDGTIRLWECGT 209
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 21/154 (13%)
Query: 16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRW 74
G+ L++ S + V + S P R + GH +T +A+ DRG V + S DG I W
Sbjct: 148 GEALISSSQDMQLKIWSVKDGSNP-RTLIGHRATVTDIAI-IDRGRNVLSASLDGTIRLW 205
Query: 75 NAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAV 134
T T R + V NS+ + + + +I T
Sbjct: 206 ECGTGTTIHTFNRKENPHDGV---------------NSIALFVGTDRQLHEISTSKK--- 247
Query: 135 NVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 168
N ++ G Y+ +G +SG + + + +KE ++
Sbjct: 248 NNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQ 281
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 83/222 (37%), Gaps = 38/222 (17%)
Query: 143 GFYIASGDISGKVRIWDTVNKE--HILKNEFHPIGGPIKDIAWSPDNQR-MVVVGEGRER 199
G +AS GKV IW N I + H + + W+P ++V +
Sbjct: 67 GTILASCSYDGKVXIWKEENGRWSQIAVHAVH--SASVNSVQWAPHEYGPXLLVASSDGK 124
Query: 200 FGHVFMSETGT-SVGEISGQSKPINSCDFKP--------------SRPFRIITGSEDNTI 244
V E GT S I + +NS + P SR F +TG DN +
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF--VTGGADNLV 182
Query: 245 AVF----EGPPFKFKMTKQEHSRFVQAVRYSPS---GSHFASAGFDGKVFLYDGASAD-- 295
++ + + + T + HS +V+ V +SP+ S+ AS D ++ +
Sbjct: 183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGP 242
Query: 296 ----LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLW 333
L+ E P ++ +W G L + GD LW
Sbjct: 243 WKKTLLKEEKFP---DVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 54/273 (19%), Positives = 99/273 (36%), Gaps = 60/273 (21%)
Query: 40 IRVIKGHNKPITALALS-PDRGTVFTG-SHDGFITRW---NAKTEYIFATLPRTQRGQPI 94
I + GH P+ + + P GT+ S+DG + W N + I + +
Sbjct: 46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSV 105
Query: 95 VLGGDPKGKNFLY--TNGNSVIIRNIENPAISDIYTE-HSCAVNVAKYSPSGF------- 144
G L ++G ++ EN S I + H+ VN A ++P+
Sbjct: 106 QWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN 165
Query: 145 ------YIASGDISGKVRIW--DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG 196
+G V+IW ++ + ++L++ ++D+AWSP
Sbjct: 166 GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT---------- 215
Query: 197 RERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM 256
V + SV S+ I ++DN +GP K +
Sbjct: 216 ------VLLRSYXASV-----------------SQDRTCIIWTQDNE----QGPWKKTLL 248
Query: 257 TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLY 289
+++ + +S SG+ A +G D KV L+
Sbjct: 249 KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 63/135 (46%), Gaps = 9/135 (6%)
Query: 245 AVFEGPPFKFKMTKQEHSRFVQAVRYSPSGS------HFASAGFDGKVFLYDGASADLVS 298
A +G F F ++ S+ ++ Y+ + F +G + + D ++ +L
Sbjct: 74 ARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLD-SNFNLQR 132
Query: 299 ELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCL 358
E+ + AH + + + P G L+++S D K+W ++ S L+G++ ++ +
Sbjct: 133 EI-DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN-PRTLIGHRATVTDIAII 190
Query: 359 WQGDYLLTVSLSGFI 373
+G +L+ SL G I
Sbjct: 191 DRGRNVLSASLDGTI 205
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 66/161 (40%), Gaps = 19/161 (11%)
Query: 270 YSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKT 329
+ GSH A DG FL++ D S++ A V + L T GD
Sbjct: 64 FEKVGSHLYKARLDGHDFLFNTIIRD-GSKMLKRADYTAVDTAKLQMRRFILGTTEGD-- 120
Query: 330 CKLWDIETKSAVSEFLMGNQVEDQQVSCLWQ------GDYLLTVSLSGFISYLDVNNPST 383
K+ D S F + +++ VS + + G+ L++ S + V + S
Sbjct: 121 IKVLD-------SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 173
Query: 384 PIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNAKT 423
P R + GH +T +A+ DRG V + S DG I W T
Sbjct: 174 P-RTLIGHRATVTDIAI-IDRGRNVLSASLDGTIRLWECGT 212
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 21/154 (13%)
Query: 16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRW 74
G+ L++ S + V + S P R + GH +T +A+ DRG V + S DG I W
Sbjct: 151 GEALISSSQDMQLKIWSVKDGSNP-RTLIGHRATVTDIAI-IDRGRNVLSASLDGTIRLW 208
Query: 75 NAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAV 134
T T R + V NS+ + + + +I T
Sbjct: 209 ECGTGTTIHTFNRKENPHDGV---------------NSIALFVGTDRQLHEISTSKK--- 250
Query: 135 NVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 168
N ++ G Y+ +G +SG + + + +KE ++
Sbjct: 251 NNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQ 284
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 259 QEHSRFVQAVRYSPSGSHFASAGFDGKVF-LYDGASADLVSELGNPAHKGGVYAVAWKPD 317
+ H+ V+ VR + G A+ DG + ++ + LV E + + + W PD
Sbjct: 176 KAHANPVKMVRLNRKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGLDRTSIIDMRWSPD 235
Query: 318 GTQLLTASGDKTCKLWDI 335
G++L S T ++++
Sbjct: 236 GSKLAVVSDKWTLHVFEV 253
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 2/129 (1%)
Query: 296 LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQV 355
LV++ H V ++ DGTQ ++ D + K+WD+ K+ + + + +
Sbjct: 129 LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVA 188
Query: 356 SCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPI-TALALSPDRGTVFT-GSHD 413
+C + L+ G I D P R+ + I T++ P++ F G
Sbjct: 189 ACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDET 248
Query: 414 GFITRWNAK 422
G ++ N K
Sbjct: 249 GNVSLVNIK 257
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 104/280 (37%), Gaps = 55/280 (19%)
Query: 135 NVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVG 194
+VA S G +AS SG V +W+ + KE +L N+F DI + + V
Sbjct: 99 DVAWVSEKGILVASD--SGAVELWEILEKESLLVNKFAKY--EHDDIV-----KTLSVFS 149
Query: 195 EGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF 254
+G + ++G +D ++ V++
Sbjct: 150 DGTQ------------------------------------AVSGGKDFSVKVWDLSQKAV 173
Query: 255 KMTKQEHSRFVQAVRYSP-SGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVA 313
+ HS V V P + F S G DG++ L+D + + A +V
Sbjct: 174 LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVT 233
Query: 314 WKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCL----WQGDYLLTVSL 369
W P+ A GD+T + + K+ S + V Q ++ L +L ++S
Sbjct: 234 WHPEKDDTF-ACGDETGNVSLVNIKNPDS--AQTSAVHSQNITGLAYSYHSSPFLASISE 290
Query: 370 SGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFT 409
++ LD + S R + H +T +A SP + FT
Sbjct: 291 DCTVAVLDADF-SEVFRDLS-HRDFVTGVAWSPLDHSKFT 328
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 78/203 (38%), Gaps = 10/203 (4%)
Query: 129 EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ 188
EH V G SG V++WD ++++ +LK+ ++ + +A P
Sbjct: 137 EHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD-LSQKAVLKS-YNAHSSEVNCVAACPGKD 194
Query: 189 RMVV-VGE-GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAV 246
+ + GE GR + T + + + P S + P + G E +++
Sbjct: 195 TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIP-TSVTWHPEKDDTFACGDETGNVSL 253
Query: 247 FEGPPFKFKMTKQEHSRFVQAVRYSPSGSHF-ASAGFDGKVFLYDGASADLVSELGNPAH 305
T HS+ + + YS S F AS D V + D AD + +H
Sbjct: 254 VNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLD---ADFSEVFRDLSH 310
Query: 306 KGGVYAVAWKP-DGTQLLTASGD 327
+ V VAW P D ++ T D
Sbjct: 311 RDFVTGVAWSPLDHSKFTTVGWD 333
>pdb|1RP5|A Chain A, Pbp2x From Streptococcus Pneumoniae Strain 5259 With
Reduced Susceptibility To Beta-Lactam Antibiotics
pdb|1RP5|B Chain B, Pbp2x From Streptococcus Pneumoniae Strain 5259 With
Reduced Susceptibility To Beta-Lactam Antibiotics
Length = 702
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 10/114 (8%)
Query: 162 NKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKP 221
N + + K++ +G P+ A S MV+VG +G ++ TG + + GQ+
Sbjct: 439 NDQSVRKSQKEIVGNPVSKEAASVTRDHMVMVGTD-PTYGTMYNHSTGKATVNVPGQNVA 497
Query: 222 INS--CDFKPSRPFRIITGSEDNTIAVF-----EGPPFKFKMTKQ--EHSRFVQ 266
+ S + + +TGS +N +V E P F +T Q EH +Q
Sbjct: 498 LKSGTAEIADEKNGGYLTGSTNNIFSVVSMHPAENPDFILYVTVQQPEHYSGIQ 551
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGT------VFTGSHD 68
Q YL T G + ++ P P+ +KGH + I A+ G + TGS D
Sbjct: 79 QQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD 138
Query: 69 GFITRWNAKTE 79
G + W+ + +
Sbjct: 139 GTVKVWDPRQK 149
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 360 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGT------VFTGSHD 413
Q YL T G + ++ P P+ +KGH + I A+ G + TGS D
Sbjct: 79 QQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD 138
Query: 414 GFITRWNAK 422
G + W+ +
Sbjct: 139 GTVKVWDPR 147
>pdb|2GOP|A Chain A, The Beta-Propeller Domain Of The Trilobed Protease From
Pyrococcus Furiosus Reveals An Open Velcro Topology
pdb|2GOP|B Chain B, The Beta-Propeller Domain Of The Trilobed Protease From
Pyrococcus Furiosus Reveals An Open Velcro Topology
Length = 347
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 22/133 (16%)
Query: 74 WNAKTEYIFATL--PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHS 131
WN KT FA L PRT+ + K+ Y N +++I N++N A + E++
Sbjct: 6 WNEKTFAKFAYLSDPRTKGELVAYVLTKANLKDNKYEN--TIVIENLKNNARR--FIENA 61
Query: 132 CAVNVAKYSPSGFYIA--SGDISGKV-RIW----DTVNKEHILKNEFHPIGGPIKDIAWS 184
+ + SP G IA + KV IW +T++ + IL+ I+ + W+
Sbjct: 62 T---MPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE------AKNIRSLEWN 112
Query: 185 PDNQRMVVVGEGR 197
D++++++VG R
Sbjct: 113 EDSRKLLIVGFKR 125
>pdb|2WAE|A Chain A, Penicillin-Binding Protein 2b (Pbp-2b) From Streptococcus
Pneumoniae (Strain 5204)
Length = 680
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 298 SELGNPAHK--GGVYAVAWKPDGTQLLTASG----DKTCKLWDIETKSAVSEFLMGNQVE 351
SELGN K GVYAVA P +L+ SG KT +L + + F+ G+ V+
Sbjct: 330 SELGNGGAKYSEGVYAVALNPQTGAVLSMSGLKHDLKTGELTPDSLGTVTNVFVPGSVVK 389
Query: 352 DQQVSCLWQGDYL 364
+S W+ L
Sbjct: 390 AATISSGWENGVL 402
>pdb|2WAD|A Chain A, Penicillin-Binding Protein 2b (Pbp-2b) From Streptococcus
Pneumoniae (Strain 5204)
pdb|2WAD|B Chain B, Penicillin-Binding Protein 2b (Pbp-2b) From Streptococcus
Pneumoniae (Strain 5204)
pdb|2WAD|C Chain C, Penicillin-Binding Protein 2b (Pbp-2b) From Streptococcus
Pneumoniae (Strain 5204)
Length = 680
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 298 SELGNPAHK--GGVYAVAWKPDGTQLLTASG----DKTCKLWDIETKSAVSEFLMGNQVE 351
SELGN K GVYAVA P +L+ SG KT +L + + F+ G+ V+
Sbjct: 330 SELGNGGAKYSEGVYAVALNPQTGAVLSMSGLKHDLKTGELTPDSLGTVTNVFVPGSVVK 389
Query: 352 DQQVSCLWQGDYL 364
+S W+ L
Sbjct: 390 AATISSGWENGVL 402
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 320 QLLTASGDKTCKLWD----IETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISY 375
+ LTAS DKT KLW I+T S + ++ + ++ + G + ++ S G I
Sbjct: 157 KFLTASADKTIKLWQNDKVIKTFSGIHNDVV------RHLAVVDDG-HFISCSNDGLIKL 209
Query: 376 LDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 422
+D + +R +GH + + L P+ G + + D + W+ +
Sbjct: 210 VDXHTGDV-LRTYEGHESFVYCIKLLPN-GDIVSCGEDRTVRIWSKE 254
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 49 PITALALSPDRGTVFTGSHDGFITRWNAKT 78
P+ ++ SP ++T DG I+ WN +T
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQT 282
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 394 PITALALSPDRGTVFTGSHDGFITRWNAKT 423
P+ ++ SP ++T DG I+ WN +T
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQT 282
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 49 PITALALSPDRGTVFTGSHDGFITRWNAKTE 79
P+ ++ SP ++T DG I+ WN +T
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 394 PITALALSPDRGTVFTGSHDGFITRWNAKT 423
P+ ++ SP ++T DG I+ WN +T
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQT 282
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 49 PITALALSPDRGTVFTGSHDGFITRWNAKTE 79
P+ ++ SP ++T DG I+ WN +T
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 394 PITALALSPDRGTVFTGSHDGFITRWNAKT 423
P+ ++ SP ++T DG I+ WN +T
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQT 282
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 49 PITALALSPDRGTVFTGSHDGFITRWNAKT 78
P+ ++ SP ++T DG I+ WN +T
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQT 282
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 394 PITALALSPDRGTVFTGSHDGFITRWNAKT 423
P+ ++ SP ++T DG I+ WN +T
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQT 282
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,277,075
Number of Sequences: 62578
Number of extensions: 645180
Number of successful extensions: 2704
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1413
Number of HSP's gapped (non-prelim): 569
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)