Query psy13076
Match_columns 423
No_of_seqs 201 out of 2392
Neff 10.7
Searched_HMMs 29240
Date Fri Aug 16 18:49:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13076.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13076hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 3.4E-55 1.2E-59 434.7 52.6 408 8-423 22-567 (611)
2 1nr0_A Actin interacting prote 100.0 1.2E-54 4E-59 430.9 50.6 407 8-422 63-610 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 4.1E-51 1.4E-55 403.2 53.3 392 9-420 185-577 (577)
4 2ymu_A WD-40 repeat protein; u 100.0 1E-49 3.4E-54 393.3 53.3 394 9-422 21-497 (577)
5 1pgu_A Actin interacting prote 100.0 6.1E-47 2.1E-51 375.9 52.4 403 8-423 22-614 (615)
6 2oaj_A Protein SNI1; WD40 repe 100.0 1.6E-47 5.3E-52 393.5 44.6 404 8-421 21-659 (902)
7 3sfz_A APAF-1, apoptotic pepti 100.0 2.7E-47 9.1E-52 407.8 46.3 404 9-423 620-1158(1249)
8 1got_B GT-beta; complex (GTP-b 100.0 5.9E-46 2E-50 342.0 41.2 294 38-420 46-340 (340)
9 3ow8_A WD repeat-containing pr 100.0 1.6E-45 5.4E-50 336.1 39.4 292 40-422 25-320 (321)
10 1vyh_C Platelet-activating fac 100.0 1E-45 3.5E-50 349.0 38.9 290 40-422 101-410 (410)
11 3fm0_A Protein CIAO1; WDR39,SG 100.0 9.3E-46 3.2E-50 341.4 37.2 302 38-423 6-335 (345)
12 3sfz_A APAF-1, apoptotic pepti 100.0 1.5E-45 5.1E-50 394.2 38.8 397 15-422 712-1248(1249)
13 2oaj_A Protein SNI1; WD40 repe 100.0 1.8E-44 6.1E-49 370.8 44.7 404 9-423 63-732 (902)
14 2pbi_B Guanine nucleotide-bind 100.0 2E-44 6.8E-49 333.5 39.4 297 38-420 55-354 (354)
15 3iz6_a 40S ribosomal protein R 100.0 3.8E-45 1.3E-49 341.8 33.2 308 30-422 50-374 (380)
16 3frx_A Guanine nucleotide-bind 100.0 9.8E-44 3.4E-48 324.2 36.5 302 40-423 10-317 (319)
17 4ery_A WD repeat-containing pr 100.0 8.7E-43 3E-47 316.9 40.9 294 38-422 14-311 (312)
18 2xzm_R RACK1; ribosome, transl 100.0 2.9E-43 9.8E-48 324.5 38.0 296 15-423 38-340 (343)
19 1vyh_C Platelet-activating fac 100.0 2.4E-43 8.1E-48 332.9 38.3 279 9-336 113-410 (410)
20 4g56_B MGC81050 protein; prote 100.0 9.2E-44 3.2E-48 329.4 34.8 316 16-422 17-342 (357)
21 2ynn_A Coatomer subunit beta'; 100.0 6.5E-43 2.2E-47 316.6 38.8 292 38-422 4-301 (304)
22 2hes_X YDR267CP; beta-propelle 100.0 2.8E-43 9.4E-48 322.8 36.5 301 38-423 5-328 (330)
23 4gqb_B Methylosome protein 50; 100.0 4.7E-43 1.6E-47 322.4 36.0 299 44-423 27-331 (344)
24 3ow8_A WD repeat-containing pr 100.0 1.5E-42 5.2E-47 316.4 37.5 273 15-336 47-320 (321)
25 2pm9_A Protein WEB1, protein t 100.0 2.9E-44 1E-48 339.6 26.0 363 8-423 16-414 (416)
26 3mkq_A Coatomer beta'-subunit; 100.0 2.1E-42 7.2E-47 354.6 40.6 393 9-423 18-460 (814)
27 1r5m_A SIR4-interacting protei 100.0 5.9E-42 2E-46 324.2 39.4 350 27-422 26-424 (425)
28 1gxr_A ESG1, transducin-like e 100.0 4.4E-42 1.5E-46 314.9 37.0 323 8-421 13-335 (337)
29 3vl1_A 26S proteasome regulato 100.0 3.3E-42 1.1E-46 326.1 36.8 343 8-422 60-418 (420)
30 4aow_A Guanine nucleotide-bind 100.0 2E-41 6.8E-46 311.3 40.9 305 39-423 30-337 (340)
31 1got_B GT-beta; complex (GTP-b 100.0 2.3E-41 7.9E-46 311.4 37.4 275 9-334 60-340 (340)
32 4gqb_B Methylosome protein 50; 100.0 8.1E-42 2.8E-46 314.1 32.3 285 9-339 35-333 (344)
33 4g56_B MGC81050 protein; prote 100.0 1.5E-41 5.1E-46 314.5 34.2 286 8-339 46-345 (357)
34 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.4E-41 1.2E-45 310.9 34.9 291 8-341 20-339 (345)
35 1erj_A Transcriptional repress 100.0 2.7E-40 9.3E-45 310.3 41.5 320 28-422 42-388 (393)
36 1pgu_A Actin interacting prote 100.0 1.8E-40 6.1E-45 329.3 41.8 332 44-421 15-364 (615)
37 2ynn_A Coatomer subunit beta'; 100.0 3.5E-40 1.2E-44 298.6 38.1 280 9-337 18-302 (304)
38 2j04_B YDR362CP, TAU91; beta p 100.0 4.7E-42 1.6E-46 331.4 24.8 326 14-422 171-516 (524)
39 3iz6_a 40S ribosomal protein R 100.0 9.5E-41 3.2E-45 312.0 31.3 292 9-339 71-377 (380)
40 3zwl_B Eukaryotic translation 100.0 1.5E-39 5.2E-44 301.8 38.5 301 40-422 25-345 (369)
41 3frx_A Guanine nucleotide-bind 100.0 1E-39 3.5E-44 297.6 36.0 279 10-338 23-318 (319)
42 4e54_B DNA damage-binding prot 100.0 1.5E-40 5E-45 316.4 31.6 297 40-423 112-430 (435)
43 3mkq_A Coatomer beta'-subunit; 100.0 2.7E-39 9.1E-44 331.5 43.2 370 38-421 4-421 (814)
44 3v7d_B Cell division control p 100.0 2.2E-39 7.4E-44 311.0 39.8 332 10-419 125-459 (464)
45 3dm0_A Maltose-binding peripla 100.0 5.2E-40 1.8E-44 330.8 36.5 293 16-422 395-692 (694)
46 2hes_X YDR267CP; beta-propelle 100.0 2E-39 6.7E-44 297.2 37.1 291 8-337 16-328 (330)
47 2pbi_B Guanine nucleotide-bind 100.0 2.3E-39 7.9E-44 299.6 37.1 282 9-334 69-354 (354)
48 3ei3_B DNA damage-binding prot 100.0 8.7E-40 3E-44 305.8 34.4 293 38-423 64-382 (383)
49 2pm7_B Protein transport prote 100.0 1.5E-39 5.1E-44 293.5 34.0 257 40-422 2-284 (297)
50 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2E-38 6.8E-43 302.7 43.6 308 12-422 125-441 (445)
51 1r5m_A SIR4-interacting protei 100.0 2.7E-39 9.2E-44 305.9 36.6 319 9-379 50-424 (425)
52 1k8k_C P40, ARP2/3 complex 41 100.0 3.5E-39 1.2E-43 300.0 35.2 292 42-422 3-360 (372)
53 4h5i_A Guanine nucleotide-exch 100.0 1.3E-39 4.4E-44 302.4 31.6 289 8-422 18-342 (365)
54 1erj_A Transcriptional repress 100.0 1.1E-38 3.7E-43 299.4 36.9 277 9-337 69-389 (393)
55 1sq9_A Antiviral protein SKI8; 100.0 1E-38 3.6E-43 299.7 35.7 321 7-423 17-395 (397)
56 3gre_A Serine/threonine-protei 100.0 7E-40 2.4E-44 312.0 27.6 351 12-420 35-437 (437)
57 4a11_B DNA excision repair pro 100.0 1.1E-38 3.8E-43 300.1 32.1 325 23-423 20-365 (408)
58 4ery_A WD repeat-containing pr 100.0 1.6E-37 5.5E-42 282.2 38.6 278 9-336 28-311 (312)
59 3dwl_C Actin-related protein 2 100.0 3.4E-39 1.1E-43 301.1 26.1 290 42-421 6-377 (377)
60 3i2n_A WD repeat-containing pr 100.0 3.1E-38 1.1E-42 291.8 32.2 318 39-423 10-353 (357)
61 3k26_A Polycomb protein EED; W 100.0 4.7E-38 1.6E-42 291.5 33.5 296 42-423 13-366 (366)
62 3bg1_A Protein SEC13 homolog; 100.0 5.5E-39 1.9E-43 292.4 26.3 256 42-422 8-292 (316)
63 3odt_A Protein DOA1; ubiquitin 100.0 2E-37 6.9E-42 281.0 36.1 292 32-423 3-296 (313)
64 4aow_A Guanine nucleotide-bind 100.0 2.3E-37 7.8E-42 284.1 36.4 285 9-339 43-339 (340)
65 4aez_A CDC20, WD repeat-contai 100.0 2.1E-37 7.2E-42 291.5 36.8 280 8-423 95-380 (401)
66 2pm7_B Protein transport prote 100.0 8.1E-38 2.8E-42 282.1 31.3 257 9-337 14-285 (297)
67 4gga_A P55CDC, cell division c 100.0 3.8E-36 1.3E-40 284.7 39.8 279 50-422 108-394 (420)
68 3vl1_A 26S proteasome regulato 100.0 1.5E-37 5.2E-42 294.1 29.2 284 48-422 57-364 (420)
69 1k8k_C P40, ARP2/3 complex 41 100.0 7.1E-37 2.4E-41 284.4 32.4 286 9-339 13-363 (372)
70 3dw8_B Serine/threonine-protei 100.0 4.6E-37 1.6E-41 293.1 31.8 351 10-421 34-444 (447)
71 4ggc_A P55CDC, cell division c 100.0 1.5E-35 5.1E-40 269.4 39.5 293 36-422 10-314 (318)
72 2pm9_A Protein WEB1, protein t 100.0 8E-37 2.7E-41 288.6 31.8 291 46-423 11-337 (416)
73 3f3f_A Nucleoporin SEH1; struc 100.0 7.7E-37 2.6E-41 280.9 30.7 305 41-423 5-337 (351)
74 3zwl_B Eukaryotic translation 100.0 4E-36 1.4E-40 278.7 35.3 283 9-341 37-350 (369)
75 3bg1_A Protein SEC13 homolog; 100.0 6.1E-37 2.1E-41 278.9 25.6 259 9-337 18-293 (316)
76 3odt_A Protein DOA1; ubiquitin 100.0 2.9E-35 1E-39 266.8 36.3 278 10-344 24-303 (313)
77 1gxr_A ESG1, transducin-like e 100.0 3.9E-35 1.3E-39 268.6 37.5 273 9-335 56-335 (337)
78 4e54_B DNA damage-binding prot 100.0 1.6E-36 5.4E-41 288.6 28.6 285 9-381 124-431 (435)
79 3jrp_A Fusion protein of prote 100.0 5.4E-36 1.8E-40 279.0 30.1 263 38-422 2-286 (379)
80 3dwl_C Actin-related protein 2 100.0 4.8E-37 1.6E-41 286.5 22.6 283 9-335 16-377 (377)
81 1p22_A F-BOX/WD-repeat protein 100.0 3.1E-35 1.1E-39 279.7 34.8 277 9-422 136-413 (435)
82 2aq5_A Coronin-1A; WD40 repeat 100.0 5.6E-36 1.9E-40 281.9 28.2 290 9-422 39-341 (402)
83 3ei3_B DNA damage-binding prot 100.0 2E-35 6.7E-40 276.3 31.7 278 9-337 78-382 (383)
84 3v7d_B Cell division control p 100.0 9E-35 3.1E-39 278.8 36.9 307 38-423 112-421 (464)
85 3k26_A Polycomb protein EED; W 100.0 9.7E-36 3.3E-40 275.9 29.1 274 16-337 34-366 (366)
86 4gga_A P55CDC, cell division c 100.0 2.4E-34 8.3E-39 272.3 36.0 280 12-341 111-399 (420)
87 4ggc_A P55CDC, cell division c 100.0 3.7E-34 1.3E-38 260.2 35.5 277 12-338 31-316 (318)
88 3i2n_A WD repeat-containing pr 100.0 4.8E-35 1.6E-39 270.4 29.4 281 9-340 23-356 (357)
89 1yfq_A Cell cycle arrest prote 100.0 6.5E-35 2.2E-39 268.1 29.5 282 42-415 6-315 (342)
90 2j04_A TAU60, YPL007P, hypothe 100.0 3.6E-36 1.2E-40 284.0 21.5 309 10-412 21-350 (588)
91 3mmy_A MRNA export factor; mRN 100.0 2E-34 6.7E-39 267.2 32.9 293 35-420 27-343 (368)
92 3jrp_A Fusion protein of prote 100.0 2E-34 6.8E-39 268.4 32.4 259 9-339 16-289 (379)
93 2xzm_R RACK1; ribosome, transl 100.0 1.1E-33 3.9E-38 260.3 36.5 256 124-423 14-285 (343)
94 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.4E-33 8.1E-38 267.6 39.4 279 39-423 110-391 (445)
95 4h5i_A Guanine nucleotide-exch 100.0 3.5E-34 1.2E-38 265.8 30.7 246 7-338 74-344 (365)
96 3dm0_A Maltose-binding peripla 100.0 7.1E-34 2.4E-38 286.1 34.1 217 40-342 375-597 (694)
97 3gre_A Serine/threonine-protei 100.0 2.8E-34 9.7E-39 273.2 29.3 305 8-334 67-437 (437)
98 1yfq_A Cell cycle arrest prote 100.0 1.3E-33 4.6E-38 259.3 32.7 282 9-377 16-321 (342)
99 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.6E-33 9E-38 267.6 35.9 325 47-421 4-389 (450)
100 4a11_B DNA excision repair pro 100.0 1.7E-33 5.7E-38 264.8 33.9 332 9-379 48-404 (408)
101 3vu4_A KMHSV2; beta-propeller 100.0 8.7E-34 3E-38 262.2 31.4 312 31-422 4-335 (355)
102 3f3f_A Nucleoporin SEH1; struc 100.0 7.3E-34 2.5E-38 260.9 28.9 267 9-343 16-343 (351)
103 2j04_B YDR362CP, TAU91; beta p 100.0 2.3E-34 7.9E-39 277.7 23.4 271 16-337 225-517 (524)
104 3lrv_A PRE-mRNA-splicing facto 100.0 1.5E-32 5.3E-37 252.8 34.2 272 14-376 46-329 (343)
105 2j04_A TAU60, YPL007P, hypothe 100.0 5.8E-34 2E-38 269.0 24.7 265 45-422 13-296 (588)
106 3mmy_A MRNA export factor; mRN 100.0 6.3E-33 2.2E-37 257.0 30.8 276 9-336 44-345 (368)
107 1sq9_A Antiviral protein SKI8; 100.0 1.9E-33 6.6E-38 263.8 26.8 273 40-423 9-322 (397)
108 3jro_A Fusion protein of prote 100.0 1.7E-33 5.9E-38 285.2 26.9 258 40-339 2-287 (753)
109 4aez_A CDC20, WD repeat-contai 100.0 2.4E-32 8.2E-37 257.0 30.5 244 10-344 140-387 (401)
110 2xyi_A Probable histone-bindin 100.0 3.9E-32 1.3E-36 257.9 29.6 279 41-422 122-409 (430)
111 4gq1_A NUP37; propeller, trans 100.0 1.1E-32 3.9E-37 258.4 24.9 331 5-420 14-386 (393)
112 3lrv_A PRE-mRNA-splicing facto 100.0 1.8E-32 6.3E-37 252.3 25.7 275 54-420 43-330 (343)
113 1l0q_A Surface layer protein; 100.0 4.3E-30 1.5E-34 240.6 42.0 338 16-414 2-372 (391)
114 2w18_A PALB2, fancn, partner a 100.0 8.9E-32 3E-36 239.1 28.4 276 17-422 54-356 (356)
115 3bws_A Protein LP49; two-domai 100.0 5.2E-31 1.8E-35 250.2 35.1 309 22-422 95-431 (433)
116 3dw8_B Serine/threonine-protei 100.0 7.5E-32 2.6E-36 257.0 29.4 285 129-423 26-373 (447)
117 3jro_A Fusion protein of prote 100.0 7.5E-32 2.6E-36 273.2 28.5 254 125-422 3-284 (753)
118 2xyi_A Probable histone-bindin 100.0 5E-31 1.7E-35 250.3 28.6 249 9-338 133-411 (430)
119 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.2E-30 7.6E-35 247.3 33.2 286 7-380 7-391 (450)
120 4gq1_A NUP37; propeller, trans 100.0 1.3E-31 4.3E-36 251.3 20.8 257 14-336 99-388 (393)
121 3bws_A Protein LP49; two-domai 100.0 2.4E-29 8.1E-34 238.8 32.8 278 9-337 127-432 (433)
122 1l0q_A Surface layer protein; 100.0 2.6E-28 8.9E-33 228.5 38.7 308 60-422 3-341 (391)
123 1p22_A F-BOX/WD-repeat protein 100.0 5.2E-29 1.8E-33 236.8 31.8 199 44-343 130-331 (435)
124 2aq5_A Coronin-1A; WD40 repeat 100.0 1.9E-29 6.4E-34 237.3 28.3 247 135-423 38-299 (402)
125 3vu4_A KMHSV2; beta-propeller 100.0 9.6E-29 3.3E-33 228.4 31.9 286 9-339 24-338 (355)
126 1nir_A Nitrite reductase; hemo 100.0 4.8E-28 1.7E-32 235.3 36.5 330 9-345 142-522 (543)
127 1k32_A Tricorn protease; prote 100.0 5.6E-28 1.9E-32 253.5 39.5 359 43-423 199-637 (1045)
128 1k32_A Tricorn protease; prote 100.0 6.1E-28 2.1E-32 253.3 38.8 389 7-421 55-500 (1045)
129 2w18_A PALB2, fancn, partner a 100.0 2E-29 6.9E-34 224.0 21.9 231 46-335 110-355 (356)
130 1nir_A Nitrite reductase; hemo 100.0 2E-27 6.7E-32 231.0 36.2 321 54-423 144-514 (543)
131 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.1E-26 3.9E-31 218.9 32.6 291 17-405 76-410 (415)
132 2ecf_A Dipeptidyl peptidase IV 100.0 2.4E-25 8.4E-30 225.7 36.7 355 47-421 36-457 (741)
133 1xfd_A DIP, dipeptidyl aminope 100.0 3.2E-26 1.1E-30 231.5 28.9 348 8-410 20-427 (723)
134 2ecf_A Dipeptidyl peptidase IV 99.9 3.2E-25 1.1E-29 224.8 32.2 320 9-338 41-460 (741)
135 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.3E-23 7.9E-28 196.3 35.4 250 16-319 143-410 (415)
136 2z3z_A Dipeptidyl aminopeptida 99.9 8.6E-24 2.9E-28 213.2 32.9 317 12-339 31-437 (706)
137 2ojh_A Uncharacterized protein 99.9 3.8E-24 1.3E-28 191.5 25.2 258 21-328 17-293 (297)
138 3u4y_A Uncharacterized protein 99.9 4.4E-23 1.5E-27 188.3 31.0 276 16-339 10-306 (331)
139 2ojh_A Uncharacterized protein 99.9 1E-23 3.4E-28 188.7 25.5 238 129-414 39-293 (297)
140 1pby_B Quinohemoprotein amine 99.9 5.5E-23 1.9E-27 187.8 31.0 297 17-346 2-319 (337)
141 1ri6_A Putative isomerase YBHE 99.9 9.7E-23 3.3E-27 186.6 31.9 269 18-336 7-307 (343)
142 2z3z_A Dipeptidyl aminopeptida 99.9 1.1E-22 3.6E-27 205.2 32.7 309 102-423 35-435 (706)
143 1xfd_A DIP, dipeptidyl aminope 99.9 1.1E-23 3.7E-28 213.0 24.2 320 48-422 17-392 (723)
144 3u4y_A Uncharacterized protein 99.9 3.2E-22 1.1E-26 182.6 31.2 283 54-423 4-304 (331)
145 3vgz_A Uncharacterized protein 99.9 2.3E-21 7.7E-26 178.4 31.3 270 8-328 44-335 (353)
146 1ri6_A Putative isomerase YBHE 99.9 1.6E-21 5.4E-26 178.6 29.7 271 145-421 7-306 (343)
147 1z68_A Fibroblast activation p 99.9 4.6E-22 1.6E-26 201.0 28.5 330 9-344 20-450 (719)
148 3vgz_A Uncharacterized protein 99.9 1.3E-20 4.3E-25 173.4 33.8 273 132-413 41-334 (353)
149 1pby_B Quinohemoprotein amine 99.9 1.2E-21 4.2E-26 178.8 25.9 270 60-380 2-310 (337)
150 1z68_A Fibroblast activation p 99.9 1.8E-21 6.1E-26 196.7 28.8 351 52-422 20-442 (719)
151 4a5s_A Dipeptidyl peptidase 4 99.9 1.4E-20 4.9E-25 190.4 35.0 357 47-421 16-447 (740)
152 3o4h_A Acylamino-acid-releasin 99.9 9.6E-22 3.3E-26 193.7 24.0 267 5-337 22-315 (582)
153 1jmx_B Amine dehydrogenase; ox 99.9 6.8E-21 2.3E-25 174.8 26.8 275 52-345 4-333 (349)
154 3hfq_A Uncharacterized protein 99.9 3.3E-20 1.1E-24 170.5 29.2 272 24-340 14-322 (347)
155 3o4h_A Acylamino-acid-releasin 99.9 5.2E-21 1.8E-25 188.5 25.1 271 131-422 21-314 (582)
156 3hfq_A Uncharacterized protein 99.9 1.8E-19 6.1E-24 165.6 30.7 268 151-421 14-315 (347)
157 1jof_A Carboxy-CIS,CIS-muconat 99.9 4.9E-19 1.7E-23 163.9 29.1 287 18-338 4-342 (365)
158 3scy_A Hypothetical bacterial 99.9 1.1E-17 3.7E-22 154.6 37.4 294 16-315 13-360 (361)
159 2oit_A Nucleoporin 214KDA; NH2 99.9 1.3E-19 4.4E-24 171.3 24.7 249 8-336 40-332 (434)
160 1jmx_B Amine dehydrogenase; ox 99.8 3.7E-19 1.3E-23 163.2 25.1 281 10-301 5-333 (349)
161 3scy_A Hypothetical bacterial 99.8 7.3E-18 2.5E-22 155.7 34.0 266 131-401 49-360 (361)
162 3pe7_A Oligogalacturonate lyas 99.8 3.5E-19 1.2E-23 166.1 25.3 312 30-421 14-380 (388)
163 4a5s_A Dipeptidyl peptidase 4 99.8 4.7E-18 1.6E-22 172.0 34.5 330 7-343 19-455 (740)
164 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.5E-18 8.7E-23 159.1 26.3 255 132-422 40-340 (365)
165 3pe7_A Oligogalacturonate lyas 99.8 1.5E-18 5.1E-23 161.8 22.3 277 10-335 41-380 (388)
166 2oit_A Nucleoporin 214KDA; NH2 99.8 3.9E-18 1.3E-22 161.2 21.9 205 132-338 37-279 (434)
167 3c5m_A Oligogalacturonate lyas 99.8 6E-18 2E-22 158.0 21.0 313 30-420 14-379 (396)
168 2oiz_A Aromatic amine dehydrog 99.8 2.7E-16 9.4E-21 145.0 31.3 287 110-405 30-360 (361)
169 3azo_A Aminopeptidase; POP fam 99.8 8.2E-17 2.8E-21 160.9 29.9 294 41-381 17-370 (662)
170 2oiz_A Aromatic amine dehydrog 99.8 5.5E-16 1.9E-20 142.9 30.3 292 15-319 14-360 (361)
171 3fvz_A Peptidyl-glycine alpha- 99.8 3.4E-16 1.1E-20 142.6 28.0 280 46-422 22-321 (329)
172 1q7f_A NHL, brain tumor CG1071 99.8 3.1E-15 1E-19 133.3 31.4 244 44-338 26-281 (286)
173 1qks_A Cytochrome CD1 nitrite 99.7 3.4E-14 1.2E-18 137.8 39.0 318 57-423 165-538 (567)
174 3azo_A Aminopeptidase; POP fam 99.7 3.3E-16 1.1E-20 156.6 25.4 288 123-419 15-363 (662)
175 3c5m_A Oligogalacturonate lyas 99.7 1.6E-16 5.6E-21 148.2 21.5 302 8-382 39-386 (396)
176 1q7f_A NHL, brain tumor CG1071 99.7 5.1E-15 1.8E-19 131.8 30.2 248 128-422 26-279 (286)
177 2gop_A Trilobed protease; beta 99.7 7.3E-15 2.5E-19 134.6 30.9 253 15-336 23-330 (347)
178 1qks_A Cytochrome CD1 nitrite 99.7 1.1E-13 3.7E-18 134.3 38.6 326 14-345 165-546 (567)
179 3fvz_A Peptidyl-glycine alpha- 99.7 6.8E-15 2.3E-19 133.9 25.7 243 9-292 28-321 (329)
180 2bkl_A Prolyl endopeptidase; m 99.7 9.2E-15 3.1E-19 146.8 27.3 283 11-340 74-400 (695)
181 2dg1_A DRP35, lactonase; beta 99.7 3E-14 1E-18 129.8 27.2 267 14-328 15-301 (333)
182 2xdw_A Prolyl endopeptidase; a 99.7 6.3E-14 2.2E-18 141.1 32.1 281 12-339 79-416 (710)
183 2xdw_A Prolyl endopeptidase; a 99.7 3.3E-13 1.1E-17 135.9 33.6 259 129-423 122-414 (710)
184 2bkl_A Prolyl endopeptidase; m 99.7 4.8E-14 1.6E-18 141.6 27.2 256 129-423 118-397 (695)
185 2z2n_A Virginiamycin B lyase; 99.7 3.3E-12 1.1E-16 114.0 36.5 280 129-422 12-294 (299)
186 3dsm_A Uncharacterized protein 99.6 2.6E-13 9E-18 123.3 29.4 271 24-346 15-310 (328)
187 2dg1_A DRP35, lactonase; beta 99.6 2.9E-13 9.8E-18 123.2 29.7 273 48-413 6-300 (333)
188 3e5z_A Putative gluconolactona 99.6 1.7E-13 5.8E-18 122.7 26.8 250 38-339 18-288 (296)
189 2gop_A Trilobed protease; beta 99.6 2E-13 6.8E-18 125.0 27.8 257 133-421 16-329 (347)
190 2z2n_A Virginiamycin B lyase; 99.6 1.3E-11 4.6E-16 110.0 38.2 282 44-338 11-296 (299)
191 1rwi_B Serine/threonine-protei 99.6 2.1E-12 7.1E-17 113.7 29.1 242 49-340 25-267 (270)
192 3e5z_A Putative gluconolactona 99.6 1.7E-12 5.9E-17 116.1 28.6 232 9-295 32-288 (296)
193 2qc5_A Streptogramin B lactona 99.6 1.9E-11 6.5E-16 109.1 34.6 274 8-335 23-298 (300)
194 1yr2_A Prolyl oligopeptidase; 99.6 1.4E-12 4.8E-17 131.9 28.4 282 11-339 113-443 (741)
195 2qc5_A Streptogramin B lactona 99.6 9E-11 3.1E-15 104.6 35.8 279 131-422 19-299 (300)
196 3no2_A Uncharacterized protein 99.6 6.8E-12 2.3E-16 110.8 27.7 242 58-345 4-260 (276)
197 1yr2_A Prolyl oligopeptidase; 99.5 7.1E-12 2.4E-16 126.7 31.5 256 129-423 160-441 (741)
198 3sjl_D Methylamine dehydrogena 99.5 4.1E-12 1.4E-16 115.9 26.3 289 6-346 32-372 (386)
199 1rwi_B Serine/threonine-protei 99.5 1.3E-11 4.3E-16 108.6 27.7 239 177-422 25-263 (270)
200 2mad_H Methylamine dehydrogena 99.5 1.1E-10 3.7E-15 107.7 34.9 226 112-345 48-315 (373)
201 3dsm_A Uncharacterized protein 99.5 6.3E-12 2.2E-16 114.2 25.8 260 151-422 15-301 (328)
202 3no2_A Uncharacterized protein 99.5 1.3E-11 4.6E-16 108.9 26.4 168 15-191 4-180 (276)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 4.4E-11 1.5E-15 107.6 29.5 244 44-338 14-300 (314)
204 2mad_H Methylamine dehydrogena 99.5 3.5E-10 1.2E-14 104.3 33.8 285 14-343 30-356 (373)
205 3sjl_D Methylamine dehydrogena 99.4 2.2E-10 7.6E-15 104.5 28.7 296 97-403 39-384 (386)
206 3c75_H MADH, methylamine dehyd 99.4 9.7E-11 3.3E-15 108.8 25.3 280 15-344 83-409 (426)
207 3g4e_A Regucalcin; six bladed 99.4 3.8E-10 1.3E-14 100.8 28.4 231 48-326 13-261 (297)
208 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 4.6E-10 1.6E-14 100.8 28.9 238 133-422 19-298 (314)
209 3c75_H MADH, methylamine dehyd 99.4 4.7E-10 1.6E-14 104.2 28.3 281 99-388 81-409 (426)
210 3hrp_A Uncharacterized protein 99.4 4.5E-10 1.6E-14 104.9 28.5 254 48-335 131-408 (409)
211 3hrp_A Uncharacterized protein 99.4 9.8E-10 3.4E-14 102.7 29.2 254 132-422 131-409 (409)
212 4a2l_A BT_4663, two-component 99.3 2.6E-07 8.9E-12 94.1 45.7 391 11-422 137-570 (795)
213 3iuj_A Prolyl endopeptidase; h 99.3 3.6E-10 1.2E-14 113.3 24.2 248 44-340 125-408 (693)
214 1yiq_A Quinohemoprotein alcoho 99.3 2.2E-09 7.5E-14 107.0 28.5 340 15-366 69-534 (689)
215 2qe8_A Uncharacterized protein 99.3 1E-10 3.6E-15 106.8 17.2 272 9-333 21-317 (343)
216 1kb0_A Quinohemoprotein alcoho 99.3 4.3E-09 1.5E-13 104.7 28.4 329 15-366 76-536 (677)
217 2qe8_A Uncharacterized protein 99.3 2.7E-09 9.2E-14 97.4 24.9 240 48-338 17-279 (343)
218 2ghs_A AGR_C_1268P; regucalcin 99.3 1.4E-08 4.8E-13 91.9 29.5 227 50-326 51-291 (326)
219 4a2l_A BT_4663, two-component 99.2 3.2E-06 1.1E-10 86.1 49.0 388 12-422 180-613 (795)
220 1mda_H Methylamine dehydrogena 99.2 6.5E-10 2.2E-14 101.5 19.4 259 27-347 47-356 (368)
221 1xip_A Nucleoporin NUP159; bet 99.2 4.1E-10 1.4E-14 103.2 17.6 173 8-194 41-232 (388)
222 3iuj_A Prolyl endopeptidase; h 99.2 4.3E-09 1.5E-13 105.4 25.8 250 129-422 126-404 (693)
223 3g4e_A Regucalcin; six bladed 99.2 3.4E-08 1.1E-12 88.1 28.3 200 135-344 16-236 (297)
224 3q7m_A Lipoprotein YFGL, BAMB; 99.2 9.1E-08 3.1E-12 88.3 32.2 307 15-377 52-375 (376)
225 3dr2_A Exported gluconolactona 99.2 1.4E-08 5E-13 90.8 25.2 241 38-331 35-301 (305)
226 1xip_A Nucleoporin NUP159; bet 99.2 1.3E-09 4.3E-14 99.9 17.8 172 221-409 39-230 (388)
227 2ghs_A AGR_C_1268P; regucalcin 99.1 9E-08 3.1E-12 86.5 28.3 222 134-413 51-293 (326)
228 3dr2_A Exported gluconolactona 99.1 3.6E-08 1.2E-12 88.3 25.5 148 10-163 50-225 (305)
229 1mda_H Methylamine dehydrogena 99.1 8.7E-09 3E-13 94.1 21.5 273 112-402 47-366 (368)
230 1yiq_A Quinohemoprotein alcoho 99.1 2.8E-08 9.5E-13 99.1 26.9 261 143-408 121-533 (689)
231 3q7m_A Lipoprotein YFGL, BAMB; 99.1 2.7E-07 9.3E-12 85.1 31.1 307 58-420 52-375 (376)
232 3hxj_A Pyrrolo-quinoline quino 99.1 1.6E-08 5.5E-13 91.3 20.6 294 16-337 30-324 (330)
233 1kb0_A Quinohemoprotein alcoho 99.0 8.1E-08 2.8E-12 95.6 26.2 300 102-409 78-536 (677)
234 3hxj_A Pyrrolo-quinoline quino 99.0 7.2E-08 2.5E-12 87.0 23.8 299 52-421 24-322 (330)
235 1kv9_A Type II quinohemoprotei 99.0 6.8E-07 2.3E-11 88.8 29.9 336 15-368 65-520 (668)
236 2ece_A 462AA long hypothetical 99.0 2.3E-07 8E-12 85.3 23.9 223 57-281 93-399 (462)
237 2hz6_A Endoplasmic reticulum t 99.0 9.3E-10 3.2E-14 101.4 7.9 259 15-336 8-278 (369)
238 3v9f_A Two-component system se 99.0 6.3E-05 2.1E-09 76.4 47.8 387 17-422 128-567 (781)
239 3v9f_A Two-component system se 98.9 7.7E-05 2.6E-09 75.7 48.5 402 5-422 63-523 (781)
240 2ece_A 462AA long hypothetical 98.9 2.1E-06 7.1E-11 79.1 27.1 224 185-411 93-399 (462)
241 1fwx_A Nitrous oxide reductase 98.9 1.7E-07 5.8E-12 89.3 18.9 236 100-340 99-434 (595)
242 1npe_A Nidogen, entactin; glyc 98.8 1.7E-05 5.9E-10 69.1 29.7 234 105-345 4-246 (267)
243 1npe_A Nidogen, entactin; glyc 98.8 2.8E-05 9.4E-10 67.8 29.5 252 145-405 3-263 (267)
244 2ad6_A Methanol dehydrogenase 98.8 5.2E-06 1.8E-10 80.8 26.6 80 283-365 443-522 (571)
245 1w6s_A Methanol dehydrogenase 98.7 1.7E-05 5.7E-10 77.3 28.3 80 283-365 452-531 (599)
246 2hz6_A Endoplasmic reticulum t 98.7 1.8E-08 6.1E-13 92.8 7.0 190 142-347 8-202 (369)
247 1flg_A Protein (quinoprotein e 98.6 0.00018 6.1E-09 70.1 33.3 80 283-365 465-544 (582)
248 2fp8_A Strictosidine synthase; 98.6 6.3E-05 2.1E-09 67.5 28.3 244 43-338 14-314 (322)
249 1fwx_A Nitrous oxide reductase 98.6 4.1E-06 1.4E-10 79.9 20.6 223 141-369 99-407 (595)
250 2iwa_A Glutamine cyclotransfer 98.6 1.9E-05 6.6E-10 68.1 21.7 197 134-338 23-238 (266)
251 2iwa_A Glutamine cyclotransfer 98.5 5.7E-05 2E-09 65.1 23.4 187 8-200 24-230 (266)
252 1kv9_A Type II quinohemoprotei 98.5 3.2E-05 1.1E-09 76.8 24.5 257 143-406 117-514 (668)
253 3nol_A Glutamine cyclotransfer 98.5 5.2E-05 1.8E-09 64.7 21.7 185 8-200 46-249 (262)
254 1flg_A Protein (quinoprotein e 98.5 0.0011 3.7E-08 64.6 34.0 162 242-408 291-544 (582)
255 2ad6_A Methanol dehydrogenase 98.5 0.00053 1.8E-08 66.6 31.1 163 243-408 273-522 (571)
256 3nol_A Glutamine cyclotransfer 98.4 3.2E-05 1.1E-09 66.0 19.2 185 134-328 45-246 (262)
257 1w6s_A Methanol dehydrogenase 98.4 0.00085 2.9E-08 65.3 31.2 163 242-407 278-530 (599)
258 1k3i_A Galactose oxidase precu 98.4 0.00015 5E-09 72.1 26.2 114 8-123 189-326 (656)
259 3nok_A Glutaminyl cyclase; bet 98.4 0.0001 3.5E-09 63.0 21.3 176 15-199 64-258 (268)
260 2fp8_A Strictosidine synthase; 98.3 0.00022 7.5E-09 63.9 23.7 181 9-194 23-247 (322)
261 3nok_A Glutaminyl cyclase; bet 98.3 0.00018 6.2E-09 61.4 20.3 178 223-411 58-253 (268)
262 2p4o_A Hypothetical protein; p 98.3 0.0017 5.9E-08 57.5 27.8 194 133-336 33-241 (306)
263 3v64_C Agrin; beta propeller, 98.3 0.0024 8.3E-08 57.8 29.6 244 49-300 35-282 (349)
264 2p4o_A Hypothetical protein; p 98.2 0.0021 7.1E-08 57.0 27.5 227 48-327 32-278 (306)
265 3v65_B Low-density lipoprotein 98.2 0.0016 5.5E-08 59.9 27.4 245 49-300 78-325 (386)
266 2xe4_A Oligopeptidase B; hydro 98.2 0.00025 8.5E-09 71.5 23.3 199 45-247 170-394 (751)
267 3mbr_X Glutamine cyclotransfer 98.2 0.00055 1.9E-08 57.9 21.3 186 133-328 22-225 (243)
268 3qqz_A Putative uncharacterize 98.2 0.0017 5.9E-08 55.5 24.7 204 215-420 22-250 (255)
269 3ei3_A DNA damage-binding prot 98.2 0.012 3.9E-07 62.0 44.3 141 274-420 844-996 (1158)
270 1ijq_A LDL receptor, low-densi 98.2 0.0035 1.2E-07 55.9 31.3 235 105-344 4-245 (316)
271 2xbg_A YCF48-like protein; pho 98.2 0.0037 1.3E-07 56.1 30.9 269 132-421 36-320 (327)
272 1k3i_A Galactose oxidase precu 98.2 0.0001 3.5E-09 73.2 18.8 274 136-412 190-530 (656)
273 3mbr_X Glutamine cyclotransfer 98.2 0.0016 5.6E-08 54.9 23.3 177 16-200 31-228 (243)
274 3ei3_A DNA damage-binding prot 98.1 0.013 4.3E-07 61.7 43.1 306 109-422 530-912 (1158)
275 3v65_B Low-density lipoprotein 98.1 0.0058 2E-07 56.1 28.0 234 104-344 89-325 (386)
276 3tc9_A Hypothetical hydrolase; 98.1 0.0031 1.1E-07 58.8 26.3 202 133-339 138-372 (430)
277 4hw6_A Hypothetical protein, I 98.1 0.0041 1.4E-07 58.1 27.0 237 49-291 140-431 (433)
278 3p5b_L Low density lipoprotein 98.1 0.0069 2.4E-07 55.9 30.8 239 104-345 85-328 (400)
279 4hw6_A Hypothetical protein, I 98.1 0.0051 1.8E-07 57.4 27.5 201 133-338 140-374 (433)
280 3v64_C Agrin; beta propeller, 98.0 0.0091 3.1E-07 54.0 29.4 234 104-344 46-282 (349)
281 2xe4_A Oligopeptidase B; hydro 97.9 0.00091 3.1E-08 67.4 21.0 192 221-419 175-394 (751)
282 3tc9_A Hypothetical hydrolase; 97.9 0.0044 1.5E-07 57.9 24.3 154 178-336 139-300 (430)
283 3s94_A LRP-6, low-density lipo 97.9 0.023 7.9E-07 55.6 44.7 399 11-421 46-508 (619)
284 3s94_A LRP-6, low-density lipo 97.9 0.024 8.1E-07 55.5 42.6 378 23-410 15-453 (619)
285 3m0c_C LDL receptor, low-densi 97.8 0.028 9.5E-07 56.5 29.5 237 104-344 397-639 (791)
286 3sov_A LRP-6, low-density lipo 97.8 0.016 5.6E-07 51.5 26.5 237 18-300 6-245 (318)
287 2p9w_A MAL S 1 allergenic prot 97.7 0.0051 1.7E-07 54.3 19.5 157 264-422 14-214 (334)
288 3sov_A LRP-6, low-density lipo 97.7 0.022 7.7E-07 50.6 27.3 235 105-344 7-245 (318)
289 2xbg_A YCF48-like protein; pho 97.7 0.028 9.5E-07 50.2 31.0 273 47-335 35-320 (327)
290 3amr_A 3-phytase; beta-propell 97.7 0.028 9.5E-07 50.1 24.4 198 141-345 38-272 (355)
291 3qqz_A Putative uncharacterize 97.7 0.022 7.6E-07 48.6 28.0 206 43-291 22-251 (255)
292 1ijq_A LDL receptor, low-densi 97.6 0.036 1.2E-06 49.2 28.3 226 69-300 10-245 (316)
293 3kya_A Putative phosphatase; s 97.6 0.053 1.8E-06 51.1 26.0 209 133-344 140-415 (496)
294 2xzh_A Clathrin heavy chain 1; 97.6 0.035 1.2E-06 48.7 31.5 271 25-339 48-334 (365)
295 1n7d_A LDL receptor, low-densi 97.5 0.00097 3.3E-08 66.4 13.7 234 106-344 381-621 (699)
296 2p9w_A MAL S 1 allergenic prot 97.5 0.025 8.7E-07 49.9 21.1 197 221-418 14-260 (334)
297 3kya_A Putative phosphatase; s 97.5 0.072 2.5E-06 50.2 25.2 239 178-422 141-474 (496)
298 1n7d_A LDL receptor, low-densi 97.3 0.0045 1.5E-07 61.7 14.9 227 68-301 385-622 (699)
299 3p5b_L Low density lipoprotein 97.2 0.12 4.1E-06 47.5 33.5 223 152-382 91-322 (400)
300 3m0c_C LDL receptor, low-densi 97.1 0.27 9.2E-06 49.5 31.9 222 153-381 404-633 (791)
301 2ism_A Putative oxidoreductase 97.1 0.16 5.4E-06 45.8 23.5 226 93-325 33-333 (352)
302 4a0p_A LRP6, LRP-6, low-densit 97.0 0.28 9.5E-06 48.0 49.0 403 8-420 83-546 (628)
303 1bpo_A Protein (clathrin); cla 96.9 0.24 8.2E-06 45.4 32.6 274 25-340 47-334 (494)
304 3amr_A 3-phytase; beta-propell 96.8 0.26 8.9E-06 43.9 20.8 181 202-388 53-271 (355)
305 3sre_A PON1, serum paraoxonase 96.8 0.094 3.2E-06 47.2 17.2 137 282-422 81-251 (355)
306 1xi4_A Clathrin heavy chain; a 96.7 0.62 2.1E-05 49.3 24.4 131 25-163 47-189 (1630)
307 2ism_A Putative oxidoreductase 96.5 0.46 1.6E-05 42.7 28.3 53 359-411 276-333 (352)
308 3pbp_A Nucleoporin NUP82; beta 96.4 0.46 1.6E-05 43.4 19.2 138 56-194 29-198 (452)
309 3sre_A PON1, serum paraoxonase 96.3 0.57 1.9E-05 42.1 21.2 192 137-335 55-296 (355)
310 4a0p_A LRP6, LRP-6, low-densit 96.1 1.2 4.1E-05 43.5 50.2 380 17-410 7-450 (628)
311 3a9g_A Putative uncharacterize 96.0 0.8 2.7E-05 41.2 25.3 99 48-150 29-153 (354)
312 1tl2_A L10, protein (tachylect 95.9 0.56 1.9E-05 38.7 15.5 143 263-414 41-201 (236)
313 3a9g_A Putative uncharacterize 95.4 1.4 4.9E-05 39.5 25.0 230 93-325 31-330 (354)
314 3pbp_A Nucleoporin NUP82; beta 95.1 1.9 6.5E-05 39.4 19.5 143 272-417 30-206 (452)
315 2vpj_A Kelch-like protein 12; 94.8 1.9 6.4E-05 37.4 17.5 144 273-423 112-278 (301)
316 3das_A Putative oxidoreductase 94.7 2.2 7.6E-05 38.0 26.1 33 47-79 31-63 (347)
317 1cru_A Protein (soluble quinop 94.7 1.1 3.6E-05 41.9 15.5 62 264-325 28-99 (454)
318 3ii7_A Kelch-like protein 7; p 94.5 2.2 7.5E-05 37.1 20.8 144 273-423 101-272 (306)
319 1tl2_A L10, protein (tachylect 94.4 0.53 1.8E-05 38.8 11.0 103 308-417 42-157 (236)
320 2xn4_A Kelch-like protein 2; s 94.0 2.7 9.4E-05 36.4 20.2 144 273-423 108-276 (302)
321 1zgk_A Kelch-like ECH-associat 93.6 3.3 0.00011 36.0 19.5 143 273-423 121-287 (308)
322 1zgk_A Kelch-like ECH-associat 92.8 4.5 0.00015 35.1 15.6 143 273-423 70-240 (308)
323 2g8s_A Glucose/sorbosone dehyd 92.1 6.3 0.00022 35.2 23.8 61 264-324 272-340 (353)
324 3das_A Putative oxidoreductase 92.1 6.2 0.00021 35.1 25.5 139 9-148 36-218 (347)
325 2be1_A Serine/threonine-protei 92.0 0.67 2.3E-05 41.2 8.8 114 234-347 12-140 (339)
326 2g8s_A Glucose/sorbosone dehyd 91.8 6.7 0.00023 35.0 23.9 139 9-148 22-214 (353)
327 2vpj_A Kelch-like protein 12; 91.8 5.8 0.0002 34.2 22.3 63 273-339 206-280 (301)
328 3ii7_A Kelch-like protein 7; p 91.0 7.1 0.00024 33.7 20.0 63 273-339 200-274 (306)
329 3sbq_A Nitrous-oxide reductase 91.0 0.97 3.3E-05 42.8 9.0 104 266-369 326-454 (638)
330 2uvk_A YJHT; unknown function, 90.8 5.3 0.00018 35.5 13.9 52 273-327 65-128 (357)
331 1cru_A Protein (soluble quinop 89.1 14 0.00048 34.3 32.6 61 133-193 28-97 (454)
332 3sbq_A Nitrous-oxide reductase 88.6 17 0.00058 34.6 24.4 108 309-416 325-461 (638)
333 3ott_A Two-component system se 87.6 24 0.00082 35.1 43.4 378 16-418 202-622 (758)
334 2xn4_A Kelch-like protein 2; s 86.5 15 0.00051 31.5 22.9 103 273-380 155-276 (302)
335 1xi4_A Clathrin heavy chain; a 85.2 5.5 0.00019 42.5 10.9 129 284-422 48-187 (1630)
336 4asc_A Kelch repeat and BTB do 84.7 19 0.00064 31.2 21.5 23 273-295 196-223 (315)
337 3ott_A Two-component system se 84.6 34 0.0012 34.0 47.3 384 16-422 73-501 (758)
338 2wg3_C Hedgehog-interacting pr 82.6 19 0.00066 33.4 12.8 106 221-326 15-158 (463)
339 2be1_A Serine/threonine-protei 81.8 2.7 9.3E-05 37.3 6.4 107 275-382 11-132 (339)
340 3s25_A Hypothetical 7-bladed b 80.5 28 0.00095 30.1 18.4 125 268-410 109-240 (302)
341 2zwa_A Leucine carboxyl methyl 80.2 48 0.0016 32.7 20.1 108 272-381 499-636 (695)
342 4gq2_M Nucleoporin NUP120; bet 80.2 8.5 0.00029 39.6 10.3 39 308-346 237-275 (950)
343 4asc_A Kelch repeat and BTB do 79.6 29 0.001 29.9 24.8 93 272-369 147-252 (315)
344 2xzh_A Clathrin heavy chain 1; 78.6 35 0.0012 30.1 30.7 232 67-344 47-297 (365)
345 2zwa_A Leucine carboxyl methyl 77.0 59 0.002 32.0 17.9 148 273-423 451-635 (695)
346 3zwu_A Alkaline phosphatase PH 66.1 18 0.00062 34.7 8.0 55 95-149 480-548 (592)
347 4gq2_M Nucleoporin NUP120; bet 65.0 7.3 0.00025 40.1 5.4 37 49-85 237-273 (950)
348 2uvk_A YJHT; unknown function, 64.3 73 0.0025 27.8 19.4 29 272-300 315-349 (357)
349 1suu_A DNA gyrase subunit A; t 60.5 84 0.0029 27.2 21.1 184 235-421 11-229 (312)
350 3f7f_A Nucleoporin NUP120; nuc 58.8 15 0.00053 36.0 6.1 37 308-346 223-259 (729)
351 4a9v_A PHOX; hydrolase, beta-p 58.6 32 0.0011 32.8 8.0 55 96-150 481-549 (592)
352 4fhn_B Nucleoporin NUP120; pro 58.2 7.4 0.00025 41.0 4.2 39 309-347 240-278 (1139)
353 1bpo_A Protein (clathrin); cla 57.7 1.2E+02 0.004 28.1 29.5 232 67-344 46-296 (494)
354 4fhn_B Nucleoporin NUP120; pro 56.9 7.8 0.00027 40.8 4.1 37 49-85 239-275 (1139)
355 3zwu_A Alkaline phosphatase PH 55.8 32 0.0011 33.0 7.7 60 265-325 478-549 (592)
356 3f7f_A Nucleoporin NUP120; nuc 53.3 15 0.00051 36.1 5.0 36 49-86 223-258 (729)
357 3l6v_A GYRA, DNA gyrase subuni 52.8 1.3E+02 0.0043 26.9 19.7 150 229-380 5-180 (370)
358 2wg3_C Hedgehog-interacting pr 50.4 1.6E+02 0.0053 27.3 27.2 29 49-77 15-44 (463)
359 2woz_A Kelch repeat and BTB do 50.3 1.2E+02 0.0041 25.9 25.8 23 273-295 206-233 (318)
360 3mez_A Mannose-specific lectin 49.2 68 0.0023 22.7 7.8 54 50-116 21-74 (111)
361 1wp5_A Topoisomerase IV; broke 44.9 1.6E+02 0.0053 25.7 19.2 185 235-420 8-222 (323)
362 2woz_A Kelch repeat and BTB do 42.6 1.6E+02 0.0054 25.1 23.9 64 272-339 157-233 (318)
363 4a9v_A PHOX; hydrolase, beta-p 42.3 1E+02 0.0034 29.5 8.6 63 263-326 476-550 (592)
364 1sqj_A OXG-RCBH, oligoxylogluc 40.6 2.9E+02 0.0099 27.5 21.8 150 132-283 15-190 (789)
365 3uc1_A DNA gyrase subunit A; D 40.6 1.8E+02 0.0063 25.3 19.3 184 235-420 6-225 (327)
366 3qhy_B Beta-lactamase inhibito 35.3 2E+02 0.0069 24.2 17.3 164 241-420 80-243 (282)
367 1zi0_A DNA gyrase subunit A; b 34.3 2.2E+02 0.0076 24.4 21.7 186 235-421 6-224 (307)
368 3b7f_A Glycosyl hydrolase, BNR 34.1 2.5E+02 0.0084 24.8 30.8 153 175-328 54-254 (394)
369 3b7f_A Glycosyl hydrolase, BNR 30.6 2.8E+02 0.0096 24.4 28.6 100 177-280 178-296 (394)
370 3s25_A Hypothetical 7-bladed b 27.4 2.9E+02 0.0099 23.6 27.2 175 138-336 59-254 (302)
371 3al9_A Plexin-A2; beta-propell 24.9 95 0.0032 29.4 5.4 69 264-332 401-476 (539)
372 3no0_A DNA gyrase subunit A; D 24.6 3.1E+02 0.011 23.0 19.0 144 273-418 79-239 (276)
373 1q47_A Semaphorin 3A; beta pro 23.8 1.8E+02 0.0063 27.1 7.1 68 265-332 406-487 (495)
374 3uc1_A DNA gyrase subunit A; D 23.1 3.7E+02 0.013 23.3 18.2 179 234-414 111-321 (327)
375 1zvt_A Topoisomerase IV subuni 22.5 3.3E+02 0.011 22.6 14.9 145 235-380 5-163 (256)
376 4gz8_A Semaphorin-3A; multi-do 20.5 2.1E+02 0.0072 27.9 6.9 61 272-332 425-495 (667)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.4e-55 Score=434.71 Aligned_cols=408 Identities=17% Similarity=0.201 Sum_probs=323.3
Q ss_pred eeeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcc--eeecc
Q psy13076 8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEY--IFATL 85 (423)
Q Consensus 8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~--~~~~~ 85 (423)
..++++|||++||+++ ++.|++||+.+ .+...+|++|.++|++++|+|++++||||+.|++|++||++++. +...+
T Consensus 22 ~~~~~spdg~~l~~~~-~~~v~l~~~~~-~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~ 99 (611)
T 1nr0_A 22 VVLGNTPAGDKIQYCN-GTSVYTVPVGS-LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI 99 (611)
T ss_dssp CCCEECTTSSEEEEEE-TTEEEEEETTC-SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE
T ss_pred eEEeeCCCCCEEEeCC-CCEEEEecCCC-cccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEee
Confidence 4677888999999987 57999999975 45677899999999999999999999999999999999997543 22233
Q ss_pred cCCCCCCceEEeeCCCCCeEEEecCC---eEEEEecCCCcccccccCCcceEEEEEECCCCC-EEEEEccCCcEEEEEcC
Q psy13076 86 PRTQRGQPIVLGGDPKGKNFLYTNGN---SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGF-YIASGDISGKVRIWDTV 161 (423)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~s~~~d~~i~vwd~~ 161 (423)
. .+.+....+.++|+++.++..... ...++.++.+.....+.+|...|++++|+|++. +|++++.|++|++||..
T Consensus 100 ~-~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~ 178 (611)
T 1nr0_A 100 P-VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP 178 (611)
T ss_dssp E-CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT
T ss_pred c-ccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECC
Confidence 2 234566678999999988876532 233444445667788999999999999999987 69999999999999987
Q ss_pred CCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceeccc-------CCCcceeEEEEecCCCee
Q psy13076 162 NKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS-------GQSKPINSCDFKPSRPFR 234 (423)
Q Consensus 162 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~ 234 (423)
..+.. ..+..+...|.+++|+|+++.+++++.+. ..++|+..++..+..+. +|...|.+++|+|++.+
T Consensus 179 ~~~~~--~~l~~H~~~V~~v~fspdg~~las~s~D~--~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~- 253 (611)
T 1nr0_A 179 PFKFK--STFGEHTKFVHSVRYNPDGSLFASTGGDG--TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK- 253 (611)
T ss_dssp TBEEE--EEECCCSSCEEEEEECTTSSEEEEEETTS--CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE-
T ss_pred CCeEe--eeeccccCceEEEEECCCCCEEEEEECCC--cEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCE-
Confidence 65543 34556778999999999999988877554 45788877777766653 68899999999999875
Q ss_pred EEEEeCCCeEEEEcCCCceee-------------------------------------------eeccccccCeEEEEEC
Q psy13076 235 IITGSEDNTIAVFEGPPFKFK-------------------------------------------MTKQEHSRFVQAVRYS 271 (423)
Q Consensus 235 ~~s~s~d~~i~~~~~~~~~~~-------------------------------------------~~~~~~~~~i~~l~~s 271 (423)
+++++.|++|++||....+.. ....+|...|++++|+
T Consensus 254 l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s 333 (611)
T 1nr0_A 254 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSS 333 (611)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred EEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe
Confidence 899999999999997654322 1234688899999999
Q ss_pred CCCCEEEEEEecCeEEEEECCCccceecccc-------------------------------------------------
Q psy13076 272 PSGSHFASAGFDGKVFLYDGASADLVSELGN------------------------------------------------- 302 (423)
Q Consensus 272 ~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~------------------------------------------------- 302 (423)
|+|++|++++.|+.|++||..+++....+..
T Consensus 334 pdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~ 413 (611)
T 1nr0_A 334 ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQ 413 (611)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSC
T ss_pred CCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCC
Confidence 9999999999999999999876543222100
Q ss_pred -------------------------------cccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeE
Q psy13076 303 -------------------------------PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVE 351 (423)
Q Consensus 303 -------------------------------~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~ 351 (423)
..|...+.+++|+|+|++|++|+.|++|++||+.++.........+...
T Consensus 414 ~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~ 493 (611)
T 1nr0_A 414 PLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE 493 (611)
T ss_dssp EEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSC
T ss_pred CcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCc
Confidence 0123456789999999999999999999999998764321111233344
Q ss_pred eeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEE--eccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076 352 DQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRV--IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423 (423)
Q Consensus 352 ~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~--~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~ 423 (423)
...+.++|+|++|++++.|+.+++|+..+....... +.+|..+|++++|+||+++|+|||.|++|++||+++
T Consensus 494 v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~ 567 (611)
T 1nr0_A 494 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK 567 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred eEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCC
Confidence 566778889999999999999999999873332222 345999999999999999999999999999999853
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.2e-54 Score=430.92 Aligned_cols=407 Identities=15% Similarity=0.169 Sum_probs=322.0
Q ss_pred eeeEEEEeCCEEEEEeccceEEEEeccCCCC-ceeecccccCceeEEEEeCCCCeEEEecCC----CceEEeecCCccee
Q psy13076 8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPST-PIRVIKGHNKPITALALSPDRGTVFTGSHD----GFITRWNAKTEYIF 82 (423)
Q Consensus 8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~-~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D----~~i~vW~~~~~~~~ 82 (423)
.+++++|||++||+|+.||.|+|||+.+... ....+.+|.++|.+++|+|++++|++++.| ++|++||. +...
T Consensus 63 ~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~ 140 (611)
T 1nr0_A 63 TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSN 140 (611)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBC
T ss_pred EEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCc
Confidence 3567778999999999999999999865333 345788999999999999999999998875 47888885 3333
Q ss_pred ecccCCCCCCceEEeeCCCCCe-EEE-ecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEc
Q psy13076 83 ATLPRTQRGQPIVLGGDPKGKN-FLY-TNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDT 160 (423)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~ 160 (423)
..+.. +......+.++|++.. ++. +.+..+++|+.++.++...+.+|...|++++|+|+|++||+++.|++|++||.
T Consensus 141 ~~l~g-h~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~ 219 (611)
T 1nr0_A 141 GNLTG-QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG 219 (611)
T ss_dssp BCCCC-CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ceecC-CCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEEC
Confidence 44432 3445667889998864 444 45789999999988888999999999999999999999999999999999999
Q ss_pred CCCceeEEeee-----cCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcce-----------------------
Q psy13076 161 VNKEHILKNEF-----HPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSV----------------------- 212 (423)
Q Consensus 161 ~~~~~~~~~~~-----~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 212 (423)
.+++....... ..+.+.|.+++|+|+++.+++++.+. ..++|+..++..+
T Consensus 220 ~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~--~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (611)
T 1nr0_A 220 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK--TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 297 (611)
T ss_dssp TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS--EEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCE
T ss_pred CCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCC--eEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEE
Confidence 87765433211 14678999999999999998887543 4566765544322
Q ss_pred --------------------ecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeec--------------
Q psy13076 213 --------------------GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK-------------- 258 (423)
Q Consensus 213 --------------------~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~-------------- 258 (423)
..+.+|...|.+++|+|++.+ +++++.|++|++|+..........
T Consensus 298 ~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~-l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s 376 (611)
T 1nr0_A 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT-LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 376 (611)
T ss_dssp EEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEEC
T ss_pred EEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE-EEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEEC
Confidence 234578889999999999875 899999999999986532211100
Q ss_pred --------------------------------------------------------------------cccccCeEEEEE
Q psy13076 259 --------------------------------------------------------------------QEHSRFVQAVRY 270 (423)
Q Consensus 259 --------------------------------------------------------------------~~~~~~i~~l~~ 270 (423)
..+...+.+++|
T Consensus 377 ~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~ 456 (611)
T 1nr0_A 377 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVAL 456 (611)
T ss_dssp TTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEE
T ss_pred CCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEE
Confidence 001234678999
Q ss_pred CCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCC-cceeee-eeeCc
Q psy13076 271 SPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET-KSAVSE-FLMGN 348 (423)
Q Consensus 271 s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~-~~~i~~-~~~~~ 348 (423)
+|+|++|++|+.|+.|++||..++....... ..|...|.+++|+|+|++|++++.|++|++||+.+ ++++.. ....+
T Consensus 457 spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H 535 (611)
T 1nr0_A 457 SNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH 535 (611)
T ss_dssp CTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC
T ss_pred eCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeec
Confidence 9999999999999999999987754321111 46889999999999999999999999999999987 554433 12224
Q ss_pred eeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCce-EEeccC-CCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076 349 QVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPI-RVIKGH-NKPITALALSPDRGTVFTGSHDGFITRWNAK 422 (423)
Q Consensus 349 ~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~-~~~~~h-~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~ 422 (423)
......+.++|+|++|++++.|+.|++|++.++.... ..+.+| ...|++++|+|+++ |+|+|.|++|++|++.
T Consensus 536 ~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 536 TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 4455667778899999999999999999998866444 677899 89999999999998 9999999999999973
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.1e-51 Score=403.19 Aligned_cols=392 Identities=23% Similarity=0.376 Sum_probs=327.6
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT 88 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~ 88 (423)
.+++.+||.++++++.||.|++||.. .+.+..+.+|.++|.+++|+|++++|++++.|+.|++||.+. +.+..+..
T Consensus 185 ~~~~~~~~~~l~~~~~d~~v~~w~~~--~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~~~~~~~~- 260 (577)
T 2ymu_A 185 GVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTG- 260 (577)
T ss_dssp EEEECTTSSCEEEEETTSEEEEECTT--SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS-CEEEEECC-
T ss_pred eeeecCCCCEEEEEcCCCEEEEEeCC--CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC-CEEEEEec-
Confidence 45556699999999999999999964 567788999999999999999999999999999999999764 34444432
Q ss_pred CCCCceEEeeCCCCCeEEEe-cCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeE
Q psy13076 89 QRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL 167 (423)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~ 167 (423)
+......+.++|+++.++.. .+..+++|+.+ ++....+.+|...|.+++|+|+++++++++.|++|++||......
T Consensus 261 ~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~-- 337 (577)
T 2ymu_A 261 HSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL-- 337 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE--
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCee--
Confidence 23445567889999888765 46789999964 566777889999999999999999999999999999999765432
Q ss_pred EeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEE
Q psy13076 168 KNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF 247 (423)
Q Consensus 168 ~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~ 247 (423)
..+..+..++.+++|+|+++.+++++.+. ...+|. ..+..+..+..|...|.+++|+|++.+ +++++.|+.|++|
T Consensus 338 -~~~~~~~~~v~~~~~s~~g~~l~~~~~dg--~v~~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~~-l~~~~~d~~v~~~ 412 (577)
T 2ymu_A 338 -QTLTGHSSSVWGVAFSPDGQTIASASDDK--TVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLW 412 (577)
T ss_dssp -EEECCCSSCEEEEEECTTSSEEEEEETTS--EEEEEE-TTCCEEEEEECCSSCEEEEEECTTSSC-EEEEETTSEEEEE
T ss_pred -EEEeCCCCCEEEEEECCCCCEEEEEeCCC--EEEEEc-CCCCEEEEecCCCCCeEEEEECCCCCE-EEEEeCCCEEEEE
Confidence 23345567899999999999988876543 345565 356667778889999999999999886 8899999999999
Q ss_pred cCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCC
Q psy13076 248 EGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD 327 (423)
Q Consensus 248 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d 327 (423)
+.. .+....+..|...|++++|+|++++|++++.|+.|++||. +++.+..+ ..|...|.+++|+|++++|++++.|
T Consensus 413 ~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~--~~~~~~v~~~~~spd~~~las~~~d 488 (577)
T 2ymu_A 413 NRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTL--TGHSSSVRGVAFSPDGQTIASASDD 488 (577)
T ss_dssp CTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEE--ECCSSCEEEEEECTTSCEEEEEETT
T ss_pred eCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEE--cCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 954 4555667789999999999999999999999999999996 45555555 3688999999999999999999999
Q ss_pred CcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeE
Q psy13076 328 KTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTV 407 (423)
Q Consensus 328 ~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l 407 (423)
++|++||. +++++..+.. +......+.++++|++|++++.|+.|++||.. ...+..+.+|..+|++++|+||+++|
T Consensus 489 ~~i~iw~~-~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~--~~~~~~~~~h~~~v~~~~fs~dg~~l 564 (577)
T 2ymu_A 489 KTVKLWNR-NGQLLQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDGQTI 564 (577)
T ss_dssp SEEEEEET-TSCEEEEEEC-CSSCEEEEEECTTSSCEEEEETTSEEEEECTT--SCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred CEEEEEcC-CCCEEEEEeC-CCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC--CCEEEEEcCCCCCEEEEEEcCCCCEE
Confidence 99999995 5666666643 33345567778899999999999999999963 35678899999999999999999999
Q ss_pred EEecCCCcEEEee
Q psy13076 408 FTGSHDGFITRWN 420 (423)
Q Consensus 408 ~s~s~D~~i~~W~ 420 (423)
+|+|.|++|++||
T Consensus 565 ~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 565 ASASSDKTVKLWN 577 (577)
T ss_dssp EEEETTSCEEEEC
T ss_pred EEEeCCCEEEEeC
Confidence 9999999999997
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1e-49 Score=393.29 Aligned_cols=394 Identities=23% Similarity=0.377 Sum_probs=316.5
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT 88 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~ 88 (423)
+++++|||++||+|+.||.|++||.. .+++.+|+||.++|++++|+|++++|+|++.|++|++||.+. +.+..+..+
T Consensus 21 ~~a~spdg~~las~~~d~~v~iWd~~--~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~-~~~~~~~~~ 97 (577)
T 2ymu_A 21 GVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGH 97 (577)
T ss_dssp EEEECTTSSCEEEEETTSEEEEECTT--SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCC
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECC--CCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC-CEEEEEECC
Confidence 56777899999999999999999963 577889999999999999999999999999999999999754 333332211
Q ss_pred CCCCce--------------------------------------------------------------------------
Q psy13076 89 QRGQPI-------------------------------------------------------------------------- 94 (423)
Q Consensus 89 ~~~~~~-------------------------------------------------------------------------- 94 (423)
.+...
T Consensus 98 -~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (577)
T 2ymu_A 98 -SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 176 (577)
T ss_dssp -SSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEE
T ss_pred -CCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeec
Confidence 11111
Q ss_pred --------EEeeCCCCCeEEEe-cCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCce
Q psy13076 95 --------VLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 165 (423)
Q Consensus 95 --------~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~ 165 (423)
.+.+.|+++.++.. .+..+++|+. +++....+.+|...|.+++|+|+++++++++.|+.|++||... +.
T Consensus 177 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~~ 254 (577)
T 2ymu_A 177 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QL 254 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS-CE
T ss_pred cCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC-CE
Confidence 12334444444443 3456778874 4566677889999999999999999999999999999999643 33
Q ss_pred eEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEE
Q psy13076 166 ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIA 245 (423)
Q Consensus 166 ~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~ 245 (423)
. ..+..+..+|.+++|+|+++.+++++.+.. ..+|.. .+..+..+.+|...|.+++|+|++.. +++++.|+.++
T Consensus 255 ~--~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~--i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~-l~t~~~d~~i~ 328 (577)
T 2ymu_A 255 L--QTLTGHSSSVNGVAFRPDGQTIASASDDKT--VKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQT-IASASDDKTVK 328 (577)
T ss_dssp E--EEECCCSSCEEEEEECTTSSEEEEEETTSC--EEEEET-TSCEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEE
T ss_pred E--EEEecCCCCEEEEEEcCCCCEEEEEeCCCE--EEEEeC-CCcEEEEEecCCCCeEEEEECCCCCE-EEEEeCCCeEE
Confidence 2 234456788999999999999888776543 445653 45666778889999999999999875 88999999999
Q ss_pred EEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEe
Q psy13076 246 VFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS 325 (423)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s 325 (423)
+|+..... ......|...+.+++|+|+|+++++++.||.|++||. +++.+..+ .+|...|.+++|+|++++|++++
T Consensus 329 ~w~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~--~~~~~~v~~~~~s~dg~~l~~~~ 404 (577)
T 2ymu_A 329 LWNRNGQH-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL--TGHSSSVRGVAFSPDGQTIASAS 404 (577)
T ss_dssp EEETTSCE-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEE--ECCSSCEEEEEECTTSSCEEEEE
T ss_pred EEeCCCCe-eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEe--cCCCCCeEEEEECCCCCEEEEEe
Confidence 99976543 3456678889999999999999999999999999995 55666555 36889999999999999999999
Q ss_pred CCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCC
Q psy13076 326 GDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRG 405 (423)
Q Consensus 326 ~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~ 405 (423)
.|++|++||. +++.+..+.. +......+.+.+++.+|++++.++.+++||... ..+..+.+|..+|++++|+|+++
T Consensus 405 ~d~~v~~~~~-~~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~--~~~~~~~~~~~~v~~~~~spd~~ 480 (577)
T 2ymu_A 405 DDKTVKLWNR-NGQLLQTLTG-HSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQ 480 (577)
T ss_dssp TTSEEEEECT-TCCEEEEEEC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTS--CEEEEEECCSSCEEEEEECTTSC
T ss_pred CCCEEEEEeC-CCCEEEEecC-CCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC--CEEEEEcCCCCCEEEEEEcCCCC
Confidence 9999999996 4555555532 233444566778999999999999999999643 45678899999999999999999
Q ss_pred eEEEecCCCcEEEeeCC
Q psy13076 406 TVFTGSHDGFITRWNAK 422 (423)
Q Consensus 406 ~l~s~s~D~~i~~W~~~ 422 (423)
+|++++.|++|++||..
T Consensus 481 ~las~~~d~~i~iw~~~ 497 (577)
T 2ymu_A 481 TIASASDDKTVKLWNRN 497 (577)
T ss_dssp EEEEEETTSEEEEEETT
T ss_pred EEEEEeCCCEEEEEcCC
Confidence 99999999999999964
No 5
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.1e-47 Score=375.86 Aligned_cols=403 Identities=15% Similarity=0.168 Sum_probs=314.5
Q ss_pred eeeEEEEeCCEEEEEeccceEEEEeccCCC---CceeecccccCc-eeEEEEeC--CCCeEEEecCCCceEEeecCCc--
Q psy13076 8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPS---TPIRVIKGHNKP-ITALALSP--DRGTVFTGSHDGFITRWNAKTE-- 79 (423)
Q Consensus 8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~---~~~~~~~gh~~~-V~~l~~~~--~~~~l~sg~~D~~i~vW~~~~~-- 79 (423)
.++++++||++|++++ ++.|++||+.++. ++...+.+|.++ |++++|+| ++++|++|+.||+|++||+.++
T Consensus 22 ~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~ 100 (615)
T 1pgu_A 22 THLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKE 100 (615)
T ss_dssp CCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGG
T ss_pred eEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcc
Confidence 3577888999999988 8999999998641 567789999999 99999999 9999999999999999999754
Q ss_pred ------ceeecccCCCCCCceEEeeCCCCCeEEEecCC-----eEEEEecCCCcccccccCCcceEEEEEECCCCC-EEE
Q psy13076 80 ------YIFATLPRTQRGQPIVLGGDPKGKNFLYTNGN-----SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGF-YIA 147 (423)
Q Consensus 80 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~ 147 (423)
.....+.. .......+.++|+++.++..... .+.+|+ .+.....+.+|...|.+++|+|+++ +++
T Consensus 101 ~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 177 (615)
T 1pgu_A 101 SNSVEVNVKSEFQV-LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSM 177 (615)
T ss_dssp GTEEEEEEEEEEEC-CSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEE
T ss_pred cccccccccchhhc-ccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEE
Confidence 44444432 34456678899999988876543 555555 6677888899999999999999998 899
Q ss_pred EEccCCcEEEEEcCCCceeEEeeecCCCC---CeeEEEECCC-CCeEEEEEcCCceeeEEEeecCCcceecc-c---CCC
Q psy13076 148 SGDISGKVRIWDTVNKEHILKNEFHPIGG---PIKDIAWSPD-NQRMVVVGEGRERFGHVFMSETGTSVGEI-S---GQS 219 (423)
Q Consensus 148 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~---~v~~v~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~ 219 (423)
+++.|+.|++||..+.+... .+..+.. +|.+++|+|+ ++.+++++.+. ...+|+..+++.+..+ . .|.
T Consensus 178 ~~~~d~~v~vwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~ 253 (615)
T 1pgu_A 178 TVGDDGSVVFYQGPPFKFSA--SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR--KISCFDGKSGEFLKYIEDDQEPVQ 253 (615)
T ss_dssp EEETTTEEEEEETTTBEEEE--EECSSSCTTCCEEEEEECSTTCCEEEEEETTC--CEEEEETTTCCEEEECCBTTBCCC
T ss_pred EEeCCCcEEEEeCCCcceee--eecccCCCCceEEEEEECCCCCCEEEEEeCCC--eEEEEECCCCCEeEEecccccccC
Confidence 99999999999988766543 3444556 8999999999 99888877543 3578888888888877 5 888
Q ss_pred cceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeee------------------------------------------
Q psy13076 220 KPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT------------------------------------------ 257 (423)
Q Consensus 220 ~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~------------------------------------------ 257 (423)
..|.++.|+ ++. .+++++.|+.+++|+....+....
T Consensus 254 ~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~ 331 (615)
T 1pgu_A 254 GGIFALSWL-DSQ-KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEV 331 (615)
T ss_dssp SCEEEEEES-SSS-EEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEE
T ss_pred CceEEEEEc-CCC-EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcE
Confidence 999999999 665 488999999999998654322111
Q ss_pred ---ccccccC---------------------------------eEEEEECCCCCEEEEEEe-------------------
Q psy13076 258 ---KQEHSRF---------------------------------VQAVRYSPSGSHFASAGF------------------- 282 (423)
Q Consensus 258 ---~~~~~~~---------------------------------i~~l~~s~~g~~l~s~s~------------------- 282 (423)
+..|... |.+++| +++.++++++.
T Consensus 332 ~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~ 410 (615)
T 1pgu_A 332 LKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPK 410 (615)
T ss_dssp EEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEE
T ss_pred EEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCce
Confidence 1122222 333333 22334444444
Q ss_pred -------------------------------------------------------cCeEEEEECCCccceecccccccCC
Q psy13076 283 -------------------------------------------------------DGKVFLYDGASADLVSELGNPAHKG 307 (423)
Q Consensus 283 -------------------------------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~ 307 (423)
||.|++||..+++... .....|..
T Consensus 411 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~ 489 (615)
T 1pgu_A 411 VASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF-DLKTPLRA 489 (615)
T ss_dssp EEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE-ECSSCCSS
T ss_pred EEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccc-cccCCccC
Confidence 4444444444433221 22245888
Q ss_pred CeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEe----------cCcEEEEEeCCCcEEEEe
Q psy13076 308 GVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW----------QGDYLLTVSLSGFISYLD 377 (423)
Q Consensus 308 ~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~----------~g~~l~~~~~~~~i~~~~ 377 (423)
.|.+++|+|++++|++++.|+.|++||+.+++.+..+...+......+.+.+ ++.+|++++.|+.|++|+
T Consensus 490 ~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~ 569 (615)
T 1pgu_A 490 KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS 569 (615)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEE
T ss_pred ceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEE
Confidence 9999999999999999999999999999999888776532444556677778 899999999999999999
Q ss_pred cCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076 378 VNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423 (423)
Q Consensus 378 ~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~ 423 (423)
+.+...++..+.+|..+|++++|+|+++ |++++.|+.|++|++++
T Consensus 570 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 570 VKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp SSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred CCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 9987677888999999999999999999 99999999999999874
No 6
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-47 Score=393.50 Aligned_cols=404 Identities=11% Similarity=0.124 Sum_probs=297.9
Q ss_pred eeeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC
Q psy13076 8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR 87 (423)
Q Consensus 8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~ 87 (423)
.++++++||++||+|+.||.|++||... .+.... ..|..+|.+++|+| +++|+|++.|++|++||+++++++..+.
T Consensus 21 ~~lafspdg~~lAsgs~Dg~I~lw~~~~-~~~~~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~- 96 (902)
T 2oaj_A 21 IAAAFDFTQNLLAIATVTGEVHIYGQQQ-VEVVIK-LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF- 96 (902)
T ss_dssp EEEEEETTTTEEEEEETTSEEEEECSTT-CEEEEE-CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeCCC-cEEEEE-cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-
Confidence 4567778999999999999999999764 233323 35889999999999 8899999999999999999988877764
Q ss_pred CCCCCceEEeeCCCCCeEEEe-cCCeEEEEecCCCccc-----------ccccCCcceEEEEEECCC-CCEEEEEccCCc
Q psy13076 88 TQRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAIS-----------DIYTEHSCAVNVAKYSPS-GFYIASGDISGK 154 (423)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~-----------~~~~~h~~~i~~~~~sp~-~~~l~s~~~d~~ 154 (423)
..+....+.++|+++.++.. .+..+++|+++++.+. ..+.+|...|++++|+|+ +.++++|+.|++
T Consensus 97 -~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~ 175 (902)
T 2oaj_A 97 -VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVT 175 (902)
T ss_dssp -CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCE
T ss_pred -CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCc
Confidence 23556778899999888775 4678999999887653 456789999999999996 578999999999
Q ss_pred EEEEEcCCCceeEEeeec----------------CCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceec--cc
Q psy13076 155 VRIWDTVNKEHILKNEFH----------------PIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE--IS 216 (423)
Q Consensus 155 i~vwd~~~~~~~~~~~~~----------------~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 216 (423)
| +||+++.+.......+ .+...|.+++|+|+|+++++++.+. ...+|+..+++.+.. +.
T Consensus 176 v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg--~i~lWd~~~g~~~~~r~l~ 252 (902)
T 2oaj_A 176 L-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDN--SLVFWDANSGHMIMARTVF 252 (902)
T ss_dssp E-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTC--CEEEEETTTCCEEEEECSS
T ss_pred E-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCC--eEEEEECCCCcEEEEEeec
Confidence 9 9999887655433322 1236799999999999998887654 356788776665431 21
Q ss_pred ---C-------------CCcceeEEEEecC----CCeeEEEEeCCC-----eEEEEc-----------------------
Q psy13076 217 ---G-------------QSKPINSCDFKPS----RPFRIITGSEDN-----TIAVFE----------------------- 248 (423)
Q Consensus 217 ---~-------------~~~~i~~~~~~~~----~~~~~~s~s~d~-----~i~~~~----------------------- 248 (423)
. +..+|.+++|++. +...+++++.+. .+.+|+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~ 332 (902)
T 2oaj_A 253 ETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPK 332 (902)
T ss_dssp CSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCS
T ss_pred ccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCcc
Confidence 1 2346888888643 224455554431 344433
Q ss_pred ------------------------------------------------CCCceeee-------ec---------------
Q psy13076 249 ------------------------------------------------GPPFKFKM-------TK--------------- 258 (423)
Q Consensus 249 ------------------------------------------------~~~~~~~~-------~~--------------- 258 (423)
........ .+
T Consensus 333 ~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~ 412 (902)
T 2oaj_A 333 QMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASV 412 (902)
T ss_dssp EEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEE
T ss_pred ceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEc
Confidence 21110000 00
Q ss_pred -------------------cccccCeEEEEECCCCCEEEEEEecCeEEEEECCCcccee--ccc-------ccccCCCeE
Q psy13076 259 -------------------QEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVS--ELG-------NPAHKGGVY 310 (423)
Q Consensus 259 -------------------~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~--~~~-------~~~~~~~i~ 310 (423)
.+|...+.+++|+|+|++|++|+.|++|++||..++.... .+. ..+|...|.
T Consensus 413 ~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~ 492 (902)
T 2oaj_A 413 PNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVD 492 (902)
T ss_dssp EHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEE
T ss_pred CHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCcee
Confidence 1112223344567999999999999999999998874321 111 016888999
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEecCCcce---------------------------------------------eeeee
Q psy13076 311 AVAWKPDGTQLLTASGDKTCKLWDIETKSA---------------------------------------------VSEFL 345 (423)
Q Consensus 311 ~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~---------------------------------------------i~~~~ 345 (423)
+++|+|++++||+|+.|++|+|||+.+++. +..+.
T Consensus 493 svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 572 (902)
T 2oaj_A 493 KISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVH 572 (902)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEEC
T ss_pred EEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEE
Confidence 999999999999999999999999976631 22222
Q ss_pred eCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceE----Eec-cCCCceeEEEec-----CCC---CeEEEecC
Q psy13076 346 MGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIR----VIK-GHNKPITALALS-----PDR---GTVFTGSH 412 (423)
Q Consensus 346 ~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~----~~~-~h~~~v~~i~~s-----p~~---~~l~s~s~ 412 (423)
.+......+.++++| +|++|+.|+.|++||+.++..... .+. +|+..|++++|+ ||+ ++|++|+.
T Consensus 573 -~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~ 650 (902)
T 2oaj_A 573 -ANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTD 650 (902)
T ss_dssp -CCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEET
T ss_pred -cCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEec
Confidence 233445567778899 999999999999999876533211 233 899999999999 886 89999999
Q ss_pred CCcEEEeeC
Q psy13076 413 DGFITRWNA 421 (423)
Q Consensus 413 D~~i~~W~~ 421 (423)
|++|++||+
T Consensus 651 D~tv~~wd~ 659 (902)
T 2oaj_A 651 MGEVITYKI 659 (902)
T ss_dssp TSEEEEEEE
T ss_pred CCcEEEEEE
Confidence 999999997
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.7e-47 Score=407.76 Aligned_cols=404 Identities=20% Similarity=0.242 Sum_probs=331.9
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT 88 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~ 88 (423)
++++++||+++|+|+.||.|++||+.+ .+++..+++|.++|.+++|+|++++|++|+.|++|++||+.+++....+..+
T Consensus 620 ~~~~s~~~~~l~s~~~d~~i~vw~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~ 698 (1249)
T 3sfz_A 620 HACFSQDGQRIASCGADKTLQVFKAET-GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEH 698 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCC-CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCC
Confidence 456667999999999999999999976 5667789999999999999999999999999999999999999887776543
Q ss_pred CCCCceEEeeCCC--CCeEEEe-cCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCce
Q psy13076 89 QRGQPIVLGGDPK--GKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 165 (423)
Q Consensus 89 ~~~~~~~~~~~~~--~~~~~~~-~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~ 165 (423)
......+.++|+ +..++.. .+..+.+|+++++.....+.+|...|++++|+|+++++++++.|++|++||+.+.+.
T Consensus 699 -~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~ 777 (1249)
T 3sfz_A 699 -SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777 (1249)
T ss_dssp -SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEE
T ss_pred -CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcc
Confidence 344556677774 3444443 467899999999999999999999999999999999999999999999999876543
Q ss_pred eEEee-----------------------------------------------------ecCCCCCeeEEEECCCCCeEEE
Q psy13076 166 ILKNE-----------------------------------------------------FHPIGGPIKDIAWSPDNQRMVV 192 (423)
Q Consensus 166 ~~~~~-----------------------------------------------------~~~~~~~v~~v~~s~~~~~~~~ 192 (423)
..... ...+...+.+++|+|+++.+++
T Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 857 (1249)
T 3sfz_A 778 RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 857 (1249)
T ss_dssp EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEE
T ss_pred cceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEE
Confidence 22111 0134466778888888887776
Q ss_pred EEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC---------------------
Q psy13076 193 VGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP--------------------- 251 (423)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~--------------------- 251 (423)
++.+. ...+|...++..+..+.+|...|.+++|+|++.. +++++.|+.+++|+...
T Consensus 858 ~~~dg--~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~-l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1249)
T 3sfz_A 858 ALSQY--CVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS-FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE 934 (1249)
T ss_dssp ECSSS--CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTE
T ss_pred EeCCC--eEEEEEcCCCceeeecCCCccceEEEEECCCCCE-EEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCC
Confidence 65433 3567888888888888899999999999998875 88899999999997321
Q ss_pred ----------------------------------------------------------ceeeeeccccccCeEEEEECCC
Q psy13076 252 ----------------------------------------------------------FKFKMTKQEHSRFVQAVRYSPS 273 (423)
Q Consensus 252 ----------------------------------------------------------~~~~~~~~~~~~~i~~l~~s~~ 273 (423)
.........|...|++++|+|+
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d 1014 (1249)
T 3sfz_A 935 TMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTAD 1014 (1249)
T ss_dssp EEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSS
T ss_pred cEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCC
Confidence 0111223457788999999999
Q ss_pred CCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEee
Q psy13076 274 GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQ 353 (423)
Q Consensus 274 g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~ 353 (423)
|+++++++.||.|++||..+++.... ..|...+.+++|+|++ .+++++.|++|++||+.+++.+..+... .....
T Consensus 1015 g~~l~s~~~dg~i~vwd~~~~~~~~~---~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~ 1089 (1249)
T 3sfz_A 1015 GKTLISSSEDSVIQVWNWQTGDYVFL---QAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCH-QGTVL 1089 (1249)
T ss_dssp SSCEEEECSSSBEEEEETTTTEEECC---BCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEECC-SSCCC
T ss_pred CCEEEEEcCCCEEEEEECCCCceEEE---ecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEEEccc-CCcEE
Confidence 99999999999999999998876543 3688999999999966 5788999999999999999887776432 23345
Q ss_pred EEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076 354 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423 (423)
Q Consensus 354 ~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~ 423 (423)
.+.+.++|.++++++.++.+++||..+.. ++..+.+|..+|++++|+|++++|++++.||.|++||+.+
T Consensus 1090 ~~~~s~d~~~l~s~s~d~~v~iwd~~~~~-~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~ 1158 (1249)
T 3sfz_A 1090 SCAISSDATKFSSTSADKTAKIWSFDLLS-PLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD 1158 (1249)
T ss_dssp CEEECSSSSSCEEECCSSCCCEECSSSSS-CSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSS
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCcc-eeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 56777899999999999999999998754 4567889999999999999999999999999999999864
No 8
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.9e-46 Score=342.04 Aligned_cols=294 Identities=24% Similarity=0.377 Sum_probs=248.4
Q ss_pred CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEe
Q psy13076 38 TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRN 117 (423)
Q Consensus 38 ~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 117 (423)
.+..+|+||.++|.+++|+|++++|+||+.|++|++||..++....
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---------------------------------- 91 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---------------------------------- 91 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE----------------------------------
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce----------------------------------
Confidence 4566899999999999999999999999999999999987654322
Q ss_pred cCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC
Q psy13076 118 IENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR 197 (423)
Q Consensus 118 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~ 197 (423)
.+..|...|.+++|+|+++++++++.|+.|++|++.+.+....
T Consensus 92 --------~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~----------------------------- 134 (340)
T 1got_B 92 --------AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVR----------------------------- 134 (340)
T ss_dssp --------EEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCE-----------------------------
T ss_pred --------EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcce-----------------------------
Confidence 2345778899999999999999999999999999875431100
Q ss_pred ceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEE
Q psy13076 198 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHF 277 (423)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 277 (423)
....+.+|...+.++.|++++. +++++.|++|++||.........+..|...|.+++|+|+++++
T Consensus 135 -------------~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 199 (340)
T 1got_B 135 -------------VSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199 (340)
T ss_dssp -------------EEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred -------------eEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEE
Confidence 0011234556677777777653 7889999999999998888888888999999999999999999
Q ss_pred EEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCce-eEeeEEE
Q psy13076 278 ASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQ-VEDQQVS 356 (423)
Q Consensus 278 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~-~~~~~~~ 356 (423)
++|+.||.|++||.++++....+. +|...|.+++|+|++++|++++.|++|++||+++++.+..+..... .....+.
T Consensus 200 ~sg~~d~~v~~wd~~~~~~~~~~~--~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~ 277 (340)
T 1got_B 200 VSGACDASAKLWDVREGMCRQTFT--GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277 (340)
T ss_dssp EEEETTSCEEEEETTTCSEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred EEEeCCCcEEEEECCCCeeEEEEc--CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEE
Confidence 999999999999999988777664 6889999999999999999999999999999998877766543221 2345567
Q ss_pred EEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076 357 CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420 (423)
Q Consensus 357 ~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~ 420 (423)
+.++|.++++++.++.+++||..+.. .+..+.+|..+|++++|+|++++|+|||.|++|++||
T Consensus 278 ~s~~g~~l~~g~~d~~i~vwd~~~~~-~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 278 FSKSGRLLLAGYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ECCCCCEEEEECCCCeEEEEEcccCc-EeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 77899999999999999999998754 4677899999999999999999999999999999997
No 9
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.6e-45 Score=336.13 Aligned_cols=292 Identities=23% Similarity=0.351 Sum_probs=250.3
Q ss_pred eeecccccCceeEEEEeCC----CCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEE
Q psy13076 40 IRVIKGHNKPITALALSPD----RGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVII 115 (423)
Q Consensus 40 ~~~~~gh~~~V~~l~~~~~----~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 115 (423)
...+++|.++|.+++|+|+ +++|+||+.|++|++||+.++...
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~--------------------------------- 71 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD--------------------------------- 71 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE---------------------------------
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee---------------------------------
Confidence 3467899999999999884 568999999999999998654221
Q ss_pred EecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEc
Q psy13076 116 RNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGE 195 (423)
Q Consensus 116 ~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~ 195 (423)
....+.+|...|.+++|+|++.++++++.|++|++||+.+++..... ......+.+++|+|+++.+++++.
T Consensus 72 -------~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~g~~ 142 (321)
T 3ow8_A 72 -------LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSI--DAGPVDAWTLAFSPDSQYLATGTH 142 (321)
T ss_dssp -------EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE--ECCTTCCCCEEECTTSSEEEEECT
T ss_pred -------eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEE--eCCCccEEEEEECCCCCEEEEEcC
Confidence 11235689999999999999999999999999999999887765433 334567889999999999887654
Q ss_pred CCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCC
Q psy13076 196 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGS 275 (423)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~ 275 (423)
. ....+|..+.+.....+..+...+.+++|+|++.+ +++++.|+.|++||....+....+..|...|.+++|+|+++
T Consensus 143 d--g~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~ 219 (321)
T 3ow8_A 143 V--GKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKY-LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ 219 (321)
T ss_dssp T--SEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSC
T ss_pred C--CcEEEEEcCCCceeEEecCCCceEEEEEECCCCCE-EEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCC
Confidence 3 34578888888888788888889999999999986 89999999999999988888888889999999999999999
Q ss_pred EEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEE
Q psy13076 276 HFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQV 355 (423)
Q Consensus 276 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~ 355 (423)
+|++|+.||.|++||.++++....+. +|...|.+++|+|++++|++++.|++|++||+.+++++
T Consensus 220 ~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~-------------- 283 (321)
T 3ow8_A 220 LLVTASDDGYIKIYDVQHANLAGTLS--GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV-------------- 283 (321)
T ss_dssp EEEEECTTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--------------
T ss_pred EEEEEcCCCeEEEEECCCcceeEEEc--CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEE--------------
Confidence 99999999999999999888777664 68999999999999999999999999999999876543
Q ss_pred EEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076 356 SCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 422 (423)
Q Consensus 356 ~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~ 422 (423)
+.+.+|..+|++++|+|++++|++++.|++|++||..
T Consensus 284 ------------------------------~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 284 ------------------------------HTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ------------------------------EEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred ------------------------------EEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 3456789999999999999999999999999999964
No 10
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1e-45 Score=349.03 Aligned_cols=290 Identities=24% Similarity=0.363 Sum_probs=244.5
Q ss_pred eeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecC
Q psy13076 40 IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIE 119 (423)
Q Consensus 40 ~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 119 (423)
...+.||.++|++++|+|++++|+||+.|++|++||+++++..
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~------------------------------------- 143 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE------------------------------------- 143 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC-------------------------------------
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-------------------------------------
Confidence 4578899999999999999999999999999999999875332
Q ss_pred CCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCce
Q psy13076 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRER 199 (423)
Q Consensus 120 ~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~ 199 (423)
..+.+|...|++++|+|++++|++|+.|++|++||+.+.+... .+..+...|
T Consensus 144 -----~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~--~~~~h~~~V--------------------- 195 (410)
T 1vyh_C 144 -----RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR--TMHGHDHNV--------------------- 195 (410)
T ss_dssp -----EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE--CCCCCSSCE---------------------
T ss_pred -----EEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE--EEcCCCCCE---------------------
Confidence 2456799999999999999999999999999999987654332 222333444
Q ss_pred eeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEE
Q psy13076 200 FGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFAS 279 (423)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s 279 (423)
.+++|+|++.+ +++++.|++|++||.........+..|...|.+++++|+|.++++
T Consensus 196 -----------------------~~v~~~p~~~~-l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s 251 (410)
T 1vyh_C 196 -----------------------SSVSIMPNGDH-IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS 251 (410)
T ss_dssp -----------------------EEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred -----------------------EEEEEeCCCCE-EEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEE
Confidence 44445554443 778899999999998887777788899999999999999999999
Q ss_pred EEecCeEEEEECCCccceecccccccCCCeEEEEECCC--------------------CCeEEEEeCCCcEEEEecCCcc
Q psy13076 280 AGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPD--------------------GTQLLTASGDKTCKLWDIETKS 339 (423)
Q Consensus 280 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~--------------------~~~l~s~s~d~~i~iwd~~~~~ 339 (423)
|+.|+.|++||..+++....+. .|...|.+++|+|+ +++|++|+.|++|++||++++.
T Consensus 252 ~s~D~~v~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~ 329 (410)
T 1vyh_C 252 CSNDQTVRVWVVATKECKAELR--EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329 (410)
T ss_dssp EETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred EcCCCeEEEEECCCCceeeEec--CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 9999999999999988777663 58899999999996 6789999999999999999998
Q ss_pred eeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEe
Q psy13076 340 AVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRW 419 (423)
Q Consensus 340 ~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W 419 (423)
++..+..+ ......+.+.++|.+|++++.|+.|++||..+.. .+..+.+|...|++++|+|++++|+|||.|++|++|
T Consensus 330 ~~~~~~~h-~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW 407 (410)
T 1vyh_C 330 CLMTLVGH-DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR-CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407 (410)
T ss_dssp EEEEEECC-SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC-CCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred eEEEEECC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 88776532 3334456677899999999999999999997754 467889999999999999999999999999999999
Q ss_pred eCC
Q psy13076 420 NAK 422 (423)
Q Consensus 420 ~~~ 422 (423)
++.
T Consensus 408 ~~r 410 (410)
T 1vyh_C 408 ECR 410 (410)
T ss_dssp C--
T ss_pred eCC
Confidence 863
No 11
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=9.3e-46 Score=341.36 Aligned_cols=302 Identities=21% Similarity=0.317 Sum_probs=230.6
Q ss_pred CceeecccccC-ceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEE
Q psy13076 38 TPIRVIKGHNK-PITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIR 116 (423)
Q Consensus 38 ~~~~~~~gh~~-~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 116 (423)
+++.++++|.+ +|.+++|+|++++|+||+.|++|++||++++.....
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~-------------------------------- 53 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK-------------------------------- 53 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE--------------------------------
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee--------------------------------
Confidence 45668899988 999999999999999999999999999876432110
Q ss_pred ecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcC
Q psy13076 117 NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG 196 (423)
Q Consensus 117 ~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~ 196 (423)
.....+|...|.+++|+|++++|++++.|+++++||...........+..+..+|.+++|+|+
T Consensus 54 -------~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~---------- 116 (345)
T 3fm0_A 54 -------SVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS---------- 116 (345)
T ss_dssp -------EEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTT----------
T ss_pred -------eeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCC----------
Confidence 001257999999999999999999999999999999865543222333334444555555554
Q ss_pred CceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc---eeeeeccccccCeEEEEECCC
Q psy13076 197 RERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF---KFKMTKQEHSRFVQAVRYSPS 273 (423)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~---~~~~~~~~~~~~i~~l~~s~~ 273 (423)
+.+ +++++.|++|++|+.... .....+..|...|.+++|+|+
T Consensus 117 ----------------------------------~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~ 161 (345)
T 3fm0_A 117 ----------------------------------GNL-LATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS 161 (345)
T ss_dssp ----------------------------------SSE-EEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSS
T ss_pred ----------------------------------CCE-EEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCC
Confidence 433 778889999999986532 344556788899999999999
Q ss_pred CCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcc--------------
Q psy13076 274 GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKS-------------- 339 (423)
Q Consensus 274 g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~-------------- 339 (423)
+++|++|+.|+.|++||..+++........+|...|.+++|+|+|++|++++.|++|++||.....
T Consensus 162 ~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~ 241 (345)
T 3fm0_A 162 QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSW 241 (345)
T ss_dssp SSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEE
T ss_pred CCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcc
Confidence 999999999999999998876533222234799999999999999999999999999999964321
Q ss_pred -eeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCC---Cc-----eEEeccCCCceeEEEecCCCC-eEEE
Q psy13076 340 -AVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPS---TP-----IRVIKGHNKPITALALSPDRG-TVFT 409 (423)
Q Consensus 340 -~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~---~~-----~~~~~~h~~~v~~i~~sp~~~-~l~s 409 (423)
++..+...+......+...+++..+++++.|+.+++|+..... .+ .+...+|...|++++|+|++. +|+|
T Consensus 242 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS 321 (345)
T 3fm0_A 242 KCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLAS 321 (345)
T ss_dssp EEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEE
T ss_pred ceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEE
Confidence 1222211122233445556788999999999999999986532 11 223468999999999999985 8999
Q ss_pred ecCCCcEEEeeCCC
Q psy13076 410 GSHDGFITRWNAKT 423 (423)
Q Consensus 410 ~s~D~~i~~W~~~~ 423 (423)
||.||+|++|++.+
T Consensus 322 ~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 322 CSDDGEVAFWKYQR 335 (345)
T ss_dssp EETTSCEEEEEECC
T ss_pred cCCCCcEEEEEecC
Confidence 99999999999764
No 12
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.5e-45 Score=394.24 Aligned_cols=397 Identities=17% Similarity=0.209 Sum_probs=321.9
Q ss_pred eCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC-------
Q psy13076 15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR------- 87 (423)
Q Consensus 15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~------- 87 (423)
++.++++++.||.|++||+.+ .++...+.+|.++|++++|+|++++|++|+.||+|++||+.++.....+..
T Consensus 712 ~~~~l~sg~~d~~v~vwd~~~-~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 790 (1249)
T 3sfz_A 712 NHLLLATGSNDFFLKLWDLNQ-KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSS 790 (1249)
T ss_dssp SCCEEEEEETTSCEEEEETTS-SSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC---
T ss_pred CceEEEEEeCCCeEEEEECCC-cchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceeccccccccc
Confidence 566899999999999999976 567778999999999999999999999999999999999987654333210
Q ss_pred -----------------------------------------------CCCCCceEEeeCCCCCeEEEec-CCeEEEEecC
Q psy13076 88 -----------------------------------------------TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIE 119 (423)
Q Consensus 88 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~ 119 (423)
.+......+.++|++..++... +..+.+|+++
T Consensus 791 ~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~ 870 (1249)
T 3sfz_A 791 EDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID 870 (1249)
T ss_dssp -----CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETT
T ss_pred CCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Confidence 1122233456677777766654 5678999999
Q ss_pred CCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCc-----------------------------------
Q psy13076 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE----------------------------------- 164 (423)
Q Consensus 120 ~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~----------------------------------- 164 (423)
++.....+.+|...|++++|+|+++++++++.|++|++||..+..
T Consensus 871 ~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 950 (1249)
T 3sfz_A 871 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 950 (1249)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEE
T ss_pred CCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEe
Confidence 988888999999999999999999999999999999999954210
Q ss_pred ------------------------ee------------------EEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeE
Q psy13076 165 ------------------------HI------------------LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGH 202 (423)
Q Consensus 165 ------------------------~~------------------~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~ 202 (423)
.+ ....+..+..+|.+++|+|+++.+++++.+. ...
T Consensus 951 ~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg--~i~ 1028 (1249)
T 3sfz_A 951 GKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDS--VIQ 1028 (1249)
T ss_dssp ESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSS--BEE
T ss_pred cCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCC--EEE
Confidence 00 0011223456778888888888887765443 356
Q ss_pred EEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEe
Q psy13076 203 VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGF 282 (423)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~ 282 (423)
+|...++... .+..+...+.++.++|++ .+++++.|+.+++|+....+....+..|...|.+++|+|+|+++++++.
T Consensus 1029 vwd~~~~~~~-~~~~~~~~v~~~~~~~~~--~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~ 1105 (1249)
T 3sfz_A 1029 VWNWQTGDYV-FLQAHQETVKDFRLLQDS--RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSA 1105 (1249)
T ss_dssp EEETTTTEEE-CCBCCSSCEEEEEECSSS--EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECC
T ss_pred EEECCCCceE-EEecCCCcEEEEEEcCCC--cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcC
Confidence 7777666544 455788899999999965 4789999999999998887777778889999999999999999999999
Q ss_pred cCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeee--------eCceeEeeE
Q psy13076 283 DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFL--------MGNQVEDQQ 354 (423)
Q Consensus 283 dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~--------~~~~~~~~~ 354 (423)
||.|++||..+++....+. +|.+.|.+++|+|+|++|++++.|++|++||+.+++.+..+. ..+......
T Consensus 1106 d~~v~iwd~~~~~~~~~l~--~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1183 (1249)
T 3sfz_A 1106 DKTAKIWSFDLLSPLHELK--GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTD 1183 (1249)
T ss_dssp SSCCCEECSSSSSCSBCCC--CCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCE
T ss_pred CCcEEEEECCCcceeeeec--cCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEE
Confidence 9999999999988777664 689999999999999999999999999999999988765541 122233455
Q ss_pred EEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076 355 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 422 (423)
Q Consensus 355 ~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~ 422 (423)
+.++++|.++++++ |.+++||+.++.. +..+.+|..+|++++|+||+++|++++.||.|++|++.
T Consensus 1184 l~fs~dg~~l~s~~--g~v~vwd~~~g~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1184 VCFSPDSKTLVSAG--GYLKWWNVATGDS-SQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp EEECTTSSCEEEES--SSEEEBCSSSCBC-CCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred EEECCCCCEEEECC--CeEEEEECCCCce-eeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence 67778999998885 8999999987543 55678899999999999999999999999999999974
No 13
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-44 Score=370.79 Aligned_cols=404 Identities=12% Similarity=0.141 Sum_probs=287.3
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceee-----
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFA----- 83 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~----- 83 (423)
.+++++ |++|++++.|+.|++||+.+ .+++..+. |.+.|++++|+|++++|++|+.||+|++||++++.+..
T Consensus 63 ~l~fsp-g~~L~S~s~D~~v~lWd~~~-~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~ 139 (902)
T 2oaj_A 63 EMRFVK-GIYLVVINAKDTVYVLSLYS-QKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDN 139 (902)
T ss_dssp EEEEET-TTEEEEEETTCEEEEEETTT-CSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECC
T ss_pred EEEEcC-CCEEEEEECcCeEEEEECCC-CcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecc
Confidence 456666 88999999999999999986 45666775 77899999999999999999999999999999876531
Q ss_pred -----cccCCCCCCceEEeeCCCC-CeEEEe-cCCeEEEEecCCCcccccccCC------------------cceEEEEE
Q psy13076 84 -----TLPRTQRGQPIVLGGDPKG-KNFLYT-NGNSVIIRNIENPAISDIYTEH------------------SCAVNVAK 138 (423)
Q Consensus 84 -----~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~i~~~~~~~~~~~~~~h------------------~~~i~~~~ 138 (423)
.....+.+....+.++|++ ..++.. .+..+ +|++++++....+.+| ...|++++
T Consensus 140 ~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~ 218 (902)
T 2oaj_A 140 LQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSL 218 (902)
T ss_dssp HHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEE
T ss_pred ccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEE
Confidence 1112234556678888864 444444 45677 9999998877766655 57899999
Q ss_pred ECCCCCEEEEEccCCcEEEEEcCCCceeEEeee-----c-----------CCCCCeeEEEEC----CCCCeEEEEE-cCC
Q psy13076 139 YSPSGFYIASGDISGKVRIWDTVNKEHILKNEF-----H-----------PIGGPIKDIAWS----PDNQRMVVVG-EGR 197 (423)
Q Consensus 139 ~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-----~-----------~~~~~v~~v~~s----~~~~~~~~~~-~~~ 197 (423)
|+|+|++||+++.|++|++||+++++.+....+ + .+..+|.+++|+ |++..+++++ .+.
T Consensus 219 fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~ 298 (902)
T 2oaj_A 219 YHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSIS 298 (902)
T ss_dssp ECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECST
T ss_pred EcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCC
Confidence 999999999999999999999988765543221 1 123479999995 5544555544 221
Q ss_pred c---eeeEEEe---------------------------------------------------------------------
Q psy13076 198 E---RFGHVFM--------------------------------------------------------------------- 205 (423)
Q Consensus 198 ~---~~~~~~~--------------------------------------------------------------------- 205 (423)
. ....++.
T Consensus 299 ~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~ 378 (902)
T 2oaj_A 299 RGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIET 378 (902)
T ss_dssp TSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEE
T ss_pred CCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEE
Confidence 0 0111111
Q ss_pred --ecCCccee-------cccCCCcceeEE----------------------------------EEecCCCeeEEEEeCCC
Q psy13076 206 --SETGTSVG-------EISGQSKPINSC----------------------------------DFKPSRPFRIITGSEDN 242 (423)
Q Consensus 206 --~~~~~~~~-------~~~~~~~~i~~~----------------------------------~~~~~~~~~~~s~s~d~ 242 (423)
..++.... .+..+...|+++ +|+|++. .+++|+.|+
T Consensus 379 ~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~-~laSgs~Dg 457 (902)
T 2oaj_A 379 MLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGT-AFITGHSNG 457 (902)
T ss_dssp EETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEE-EEEEEETTS
T ss_pred EECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCc-EEEEecCCC
Confidence 00010000 011122334443 3455554 589999999
Q ss_pred eEEEEcCCCceee------eecc-----ccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccc---------------
Q psy13076 243 TIAVFEGPPFKFK------MTKQ-----EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADL--------------- 296 (423)
Q Consensus 243 ~i~~~~~~~~~~~------~~~~-----~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~--------------- 296 (423)
+|++||.....+. .... .|...|.+++|+|+|++||+|+.||+|++|+..+++.
T Consensus 458 tVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~ 537 (902)
T 2oaj_A 458 SVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMN 537 (902)
T ss_dssp EEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------
T ss_pred cEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCccccee
Confidence 9999997543211 1111 6788999999999999999999999999999876531
Q ss_pred ------------------------------eecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeee
Q psy13076 297 ------------------------------VSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLM 346 (423)
Q Consensus 297 ------------------------------~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~ 346 (423)
+..+ .+|.+.|++++|+|+| +||+|+.|++|+|||+++...+.....
T Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l--~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~ 614 (902)
T 2oaj_A 538 FRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAV--HANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENI 614 (902)
T ss_dssp CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEE--CCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEG
T ss_pred eeeccccCCccccccccccCCCCCCCccceeEEE--EcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeeh
Confidence 2222 3589999999999999 999999999999999988766542111
Q ss_pred -----CceeEeeEEEEE-----ecC---cEEEEEeCCCcEEEEec---CCCCCceEEeccC-----CCceeEEE-ec---
Q psy13076 347 -----GNQVEDQQVSCL-----WQG---DYLLTVSLSGFISYLDV---NNPSTPIRVIKGH-----NKPITALA-LS--- 401 (423)
Q Consensus 347 -----~~~~~~~~~~~~-----~~g---~~l~~~~~~~~i~~~~~---~~~~~~~~~~~~h-----~~~v~~i~-~s--- 401 (423)
++......+.++ ++| .+|++|+.|+.|++|++ .++. ....+.+| ..+|.+++ |+
T Consensus 615 ~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~-~~~~~~~~~~~~~~~~v~~i~~~~~~~ 693 (902)
T 2oaj_A 615 REISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGK-FDVQLMDITNVTSKGPIHKIDAFSKET 693 (902)
T ss_dssp GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGC-EEEEEEEEEECCSSCCCCEEEEEETTT
T ss_pred hHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCc-EEEEecCceecCCCCceEEEEeEecCC
Confidence 333345556666 564 89999999999999998 4433 34556666 47888887 76
Q ss_pred -------------------CCCCeEEEecCCCcEEEeeCCC
Q psy13076 402 -------------------PDRGTVFTGSHDGFITRWNAKT 423 (423)
Q Consensus 402 -------------------p~~~~l~s~s~D~~i~~W~~~~ 423 (423)
+++..|+++ |..||+|++.+
T Consensus 694 ~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~ 732 (902)
T 2oaj_A 694 KSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGK 732 (902)
T ss_dssp CCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTC
T ss_pred CCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCcc
Confidence 455555554 77899999864
No 14
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2e-44 Score=333.51 Aligned_cols=297 Identities=24% Similarity=0.382 Sum_probs=245.3
Q ss_pred CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEe
Q psy13076 38 TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRN 117 (423)
Q Consensus 38 ~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 117 (423)
++..+|+||.++|++++|+|++++|+||+.|++|++||..++....
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---------------------------------- 100 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---------------------------------- 100 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE----------------------------------
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce----------------------------------
Confidence 4567899999999999999999999999999999999987654322
Q ss_pred cCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC
Q psy13076 118 IENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR 197 (423)
Q Consensus 118 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~ 197 (423)
.+..|...|.+++|+|++.++++++.|+.+++|++........
T Consensus 101 --------~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~----------------------------- 143 (354)
T 2pbi_B 101 --------AVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENM----------------------------- 143 (354)
T ss_dssp --------EEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCS-----------------------------
T ss_pred --------EEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccc-----------------------------
Confidence 1234666788999999999999999999999999754321000
Q ss_pred ceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECC--CCC
Q psy13076 198 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSP--SGS 275 (423)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~--~g~ 275 (423)
......+..|...+.++.|+|++.. +++++.|++|++||....+....+..|...|.+++++| +|.
T Consensus 144 -----------~~~~~~~~~h~~~v~~~~~~~~~~~-l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~ 211 (354)
T 2pbi_B 144 -----------AAKKKSVAMHTNYLSACSFTNSDMQ-ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN 211 (354)
T ss_dssp -----------GGGCEEEEECSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC
T ss_pred -----------cccceeeeccCCcEEEEEEeCCCCE-EEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC
Confidence 0001112245566777788877664 88999999999999988888888889999999999987 578
Q ss_pred EEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCc-eeEeeE
Q psy13076 276 HFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGN-QVEDQQ 354 (423)
Q Consensus 276 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~-~~~~~~ 354 (423)
+|++|+.||.|++||+++++.+..+. .|...|.+++|+|++++|++++.|++|++||++..+.+..+.... ......
T Consensus 212 ~l~sgs~Dg~v~~wd~~~~~~~~~~~--~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~ 289 (354)
T 2pbi_B 212 TFVSGGCDKKAMVWDMRSGQCVQAFE--THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASS 289 (354)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEec--CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeE
Confidence 99999999999999999998877663 689999999999999999999999999999999887665553222 123345
Q ss_pred EEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076 355 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420 (423)
Q Consensus 355 ~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~ 420 (423)
+.+.++|.++++++.++.|++||+.+.. .+..+.+|..+|++++|+||+++|+||+.|++|++|+
T Consensus 290 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~-~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 290 VDFSLSGRLLFAGYNDYTINVWDVLKGS-RVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCS-EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEeCCCCEEEEEECCCcEEEEECCCCc-eEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 6667899999999999999999997754 4677899999999999999999999999999999996
No 15
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.8e-45 Score=341.82 Aligned_cols=308 Identities=23% Similarity=0.333 Sum_probs=248.9
Q ss_pred EEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEec
Q psy13076 30 YLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTN 109 (423)
Q Consensus 30 ~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (423)
.|+... ..+..+|+||.++|++++|+|++++|+||+.|++|++||..++....
T Consensus 50 ~~~~~~-~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~-------------------------- 102 (380)
T 3iz6_a 50 SFNPTD-LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH-------------------------- 102 (380)
T ss_dssp CCCCCC-CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE--------------------------
T ss_pred ccccce-eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce--------------------------
Confidence 444432 44567899999999999999999999999999999999998754332
Q ss_pred CCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCe
Q psy13076 110 GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 189 (423)
Q Consensus 110 ~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 189 (423)
.+.+|...|.+++|+|+++++++|+.|+.+++||+.+.... ++.
T Consensus 103 ----------------~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~-------------------~~~- 146 (380)
T 3iz6_a 103 ----------------AIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADR-------------------DGN- 146 (380)
T ss_dssp ----------------EEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSC-------------------CCS-
T ss_pred ----------------EEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccc-------------------cCC-
Confidence 23457778899999999999999999999999998643210 000
Q ss_pred EEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeec-----cccccC
Q psy13076 190 MVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK-----QEHSRF 264 (423)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~-----~~~~~~ 264 (423)
......+.+|...+.++.|.|.+...+++++.|++|++||.........+ ..|...
T Consensus 147 -------------------~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~ 207 (380)
T 3iz6_a 147 -------------------MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTAD 207 (380)
T ss_dssp -------------------STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSC
T ss_pred -------------------ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccC
Confidence 01112345677788888899887777999999999999998766554433 568888
Q ss_pred eEEEEECC-CCCEEEEEEecCeEEEEECCC-ccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceee
Q psy13076 265 VQAVRYSP-SGSHFASAGFDGKVFLYDGAS-ADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVS 342 (423)
Q Consensus 265 i~~l~~s~-~g~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~ 342 (423)
+.+++|+| ++.+|++|+.||.|++||++. .+.+..+ .+|.+.|.+++|+|++++|++++.|++|++||+++++.+.
T Consensus 208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~ 285 (380)
T 3iz6_a 208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY--HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ 285 (380)
T ss_dssp EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE--CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEE
T ss_pred eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE--CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEE
Confidence 99999987 789999999999999999974 3445554 4699999999999999999999999999999999998877
Q ss_pred eeeeCcee------EeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEe----ccCCCceeEEEecCCCCeEEEecC
Q psy13076 343 EFLMGNQV------EDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVI----KGHNKPITALALSPDRGTVFTGSH 412 (423)
Q Consensus 343 ~~~~~~~~------~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~h~~~v~~i~~sp~~~~l~s~s~ 412 (423)
.+...... ....+.+.++|.++++|+.+|.|++||....+. +..+ .+|.+.|++++|+|++++|+|||.
T Consensus 286 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~ 364 (380)
T 3iz6_a 286 VYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM-VLNLGTLQNSHEGRISCLGLSSDGSALCTGSW 364 (380)
T ss_dssp EECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCE-EEEECCSCSSCCCCCCEEEECSSSSEEEEECT
T ss_pred EecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCce-EEEEecccCCCCCceEEEEECCCCCEEEEeeC
Confidence 66432211 134566778999999999999999999987544 3333 689999999999999999999999
Q ss_pred CCcEEEeeCC
Q psy13076 413 DGFITRWNAK 422 (423)
Q Consensus 413 D~~i~~W~~~ 422 (423)
|++|++|+++
T Consensus 365 D~~i~iW~~~ 374 (380)
T 3iz6_a 365 DKNLKIWAFS 374 (380)
T ss_dssp TSCEEEEECC
T ss_pred CCCEEEEecC
Confidence 9999999976
No 16
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=9.8e-44 Score=324.18 Aligned_cols=302 Identities=20% Similarity=0.330 Sum_probs=247.0
Q ss_pred eeecccccCceeEEEEeCCC-CeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEec
Q psy13076 40 IRVIKGHNKPITALALSPDR-GTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNI 118 (423)
Q Consensus 40 ~~~~~gh~~~V~~l~~~~~~-~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 118 (423)
..+|+||.++|++++|+|++ ++|+||+.|++|++|++......
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~------------------------------------ 53 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK------------------------------------ 53 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE------------------------------------
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc------------------------------------
Confidence 44789999999999999965 79999999999999998642110
Q ss_pred CCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCc
Q psy13076 119 ENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE 198 (423)
Q Consensus 119 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~ 198 (423)
.+.....+.+|...|.+++|+|+++++++++.|++|++||+.+++... .+..+..+|.+++|+|++..+++++.+.
T Consensus 54 -~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~s~D~- 129 (319)
T 3frx_A 54 -FGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ--RFVGHKSDVMSVDIDKKASMIISGSRDK- 129 (319)
T ss_dssp -EEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--EEECCSSCEEEEEECTTSCEEEEEETTS-
T ss_pred -ccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeE--EEccCCCcEEEEEEcCCCCEEEEEeCCC-
Confidence 011223567899999999999999999999999999999998877553 3456678999999999999988877554
Q ss_pred eeeEEEeecCCcceecccCCCcceeEEEEecCCC-----eeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCC
Q psy13076 199 RFGHVFMSETGTSVGEISGQSKPINSCDFKPSRP-----FRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPS 273 (423)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 273 (423)
..++|+.. +..+..+.+|...+.++.+.|... ..+++++.|+.|++|+....+....+..|...|.+++|+|+
T Consensus 130 -~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~ 207 (319)
T 3frx_A 130 -TIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 207 (319)
T ss_dssp -CEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTT
T ss_pred -eEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCC
Confidence 35667654 556777888999999999998643 36899999999999999888888888899999999999999
Q ss_pred CCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEee
Q psy13076 274 GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQ 353 (423)
Q Consensus 274 g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~ 353 (423)
|++|++|+.||.|++||..+++.+..+. +...+.+++|+|++.+|++++.+ .+++|++.....+..+..
T Consensus 208 g~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~------- 276 (319)
T 3frx_A 208 GTLIASAGKDGEIMLWNLAAKKAMYTLS---AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRP------- 276 (319)
T ss_dssp SSEEEEEETTCEEEEEETTTTEEEEEEE---CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECC-------
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEec---CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCc-------
Confidence 9999999999999999999988877764 34679999999999999988754 599999987654433210
Q ss_pred EEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076 354 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423 (423)
Q Consensus 354 ~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~ 423 (423)
... .....|...+++++|+||+++|++|+.|++|++||+.|
T Consensus 277 ---------------------------~~~--~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 277 ---------------------------EFA--GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp ---------------------------CCT--TCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred ---------------------------ccc--ccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 000 11246778899999999999999999999999999864
No 17
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=8.7e-43 Score=316.94 Aligned_cols=294 Identities=20% Similarity=0.342 Sum_probs=240.5
Q ss_pred CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEe
Q psy13076 38 TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRN 117 (423)
Q Consensus 38 ~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 117 (423)
.+..++.||.++|++++|+|++++|++|+.|+.|++|+..+++...
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---------------------------------- 59 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---------------------------------- 59 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE----------------------------------
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch----------------------------------
Confidence 3456789999999999999999999999999999999987653321
Q ss_pred cCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC
Q psy13076 118 IENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR 197 (423)
Q Consensus 118 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~ 197 (423)
.+.+|...|.+++|+|++++|++++.|+.|++||+++.+.... +..+...|.++
T Consensus 60 --------~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--~~~~~~~v~~~---------------- 113 (312)
T 4ery_A 60 --------TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCC---------------- 113 (312)
T ss_dssp --------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE--EECCSSCEEEE----------------
T ss_pred --------hhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEE--EcCCCCCEEEE----------------
Confidence 3457888999999999999999999999999999987654322 22233444444
Q ss_pred ceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEE
Q psy13076 198 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHF 277 (423)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 277 (423)
.|+|++.+ +++++.|+.|++||....+....+..|...|.+++|+|+++++
T Consensus 114 ----------------------------~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 164 (312)
T 4ery_A 114 ----------------------------NFNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 164 (312)
T ss_dssp ----------------------------EECSSSSE-EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred ----------------------------EEcCCCCE-EEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEE
Confidence 44444443 7788999999999988877777788899999999999999999
Q ss_pred EEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeE-eeEEE
Q psy13076 278 ASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVE-DQQVS 356 (423)
Q Consensus 278 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~-~~~~~ 356 (423)
++++.||.|++||.++++.+..+.. .+...+..++|+|++++|++++.|+.|++||+++++.+..+....... .....
T Consensus 165 ~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 243 (312)
T 4ery_A 165 VSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 243 (312)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECC-SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEE
T ss_pred EEEeCCCcEEEEECCCCceeeEEec-cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEE
Confidence 9999999999999999887766542 466789999999999999999999999999999998877764332211 11112
Q ss_pred E-EecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEec--CCCcEEEeeCC
Q psy13076 357 C-LWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS--HDGFITRWNAK 422 (423)
Q Consensus 357 ~-~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s--~D~~i~~W~~~ 422 (423)
. ..++.++++++.||.|++||+.+. ..+..+.+|...|++++|+|++++|++++ .|++|++|+.+
T Consensus 244 ~~~~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 244 FSVTGGKWIVSGSEDNLVYIWNLQTK-EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EECSSSCEEEECCTTSCEEEEETTTC-CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEeCCCcEEEEECCCCEEEEEECCCc-hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 2 246889999999999999999875 45678899999999999999999999986 69999999864
No 18
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.9e-43 Score=324.53 Aligned_cols=296 Identities=21% Similarity=0.325 Sum_probs=228.0
Q ss_pred eCCEEEEEeccceEEEEeccCCC------CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076 15 QGDYLLTVSLSGFISYLDVNNPS------TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT 88 (423)
Q Consensus 15 ~~~~~~~~~~dg~i~~~d~~~~~------~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~ 88 (423)
||.+|++|+.||.|++||+..+. .+...+.+|.++|.+++|+|++.+|+||+.|++|++||+++++.+.
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~----- 112 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK----- 112 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE-----
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE-----
Confidence 89999999999999999986532 3456789999999999999999999999999999999998754322
Q ss_pred CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEE
Q psy13076 89 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 168 (423)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~ 168 (423)
.+.+|...|.+++|+|+++++++++.|++|++||+........
T Consensus 113 -------------------------------------~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~ 155 (343)
T 2xzm_R 113 -------------------------------------RFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSS 155 (343)
T ss_dssp -------------------------------------EEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEEC
T ss_pred -------------------------------------EEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeee
Confidence 3457999999999999999999999999999999874322211
Q ss_pred eeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEc
Q psy13076 169 NEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE 248 (423)
Q Consensus 169 ~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~ 248 (423)
.....+...|.+++|+|++.... .+.|..+ .+++++.|+.|++|+
T Consensus 156 ~~~~~~~~~v~~~~~~~~~~~~~----------------------------------~~~~~~~-~l~s~~~d~~i~iwd 200 (343)
T 2xzm_R 156 AEKENHSDWVSCVRYSPIMKSAN----------------------------------KVQPFAP-YFASVGWDGRLKVWN 200 (343)
T ss_dssp CTTTSCSSCEEEEEECCCCCSCS----------------------------------CCCSSCC-EEEEEETTSEEEEEE
T ss_pred ecccCCCceeeeeeecccccccc----------------------------------ccCCCCC-EEEEEcCCCEEEEEc
Confidence 11224556788899988754210 0122333 488999999999999
Q ss_pred CCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCcc-ceecccccccCCCeEEEEECCCCCeEEEEeCC
Q psy13076 249 GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD-LVSELGNPAHKGGVYAVAWKPDGTQLLTASGD 327 (423)
Q Consensus 249 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d 327 (423)
. .......+..|...|.+++|+|+|++|++|+.||.|++||+.... ....+ .+...|.+++|+|++++|++ +.|
T Consensus 201 ~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~---~~~~~v~~v~~sp~~~~la~-~~d 275 (343)
T 2xzm_R 201 T-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF---DAGSTINQIAFNPKLQWVAV-GTD 275 (343)
T ss_dssp T-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE---ECSSCEEEEEECSSSCEEEE-EES
T ss_pred C-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee---cCCCcEEEEEECCCCCEEEE-ECC
Confidence 4 455566777899999999999999999999999999999985433 33332 24456999999999988765 457
Q ss_pred CcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeE
Q psy13076 328 KTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTV 407 (423)
Q Consensus 328 ~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l 407 (423)
+.|++||+.+++......... .+........+|...|++++|+|++++|
T Consensus 276 ~~v~iw~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~v~~~~~sp~g~~l 324 (343)
T 2xzm_R 276 QGVKIFNLMTQSKAPVCTIEA-------------------------------EPITKAEGQKGKNPQCTSLAWNALGKKL 324 (343)
T ss_dssp SCEEEEESSSCCSCSEEECCC-------------------------------CSGGGBTTBCCSCCCEEEEEECSSSCCE
T ss_pred CCEEEEEeCCCCCCceEEeec-------------------------------CcchhhhhhcCCCCceEEEEECCCCCeE
Confidence 889999998765432110000 0000011235789999999999999999
Q ss_pred EEecCCCcEEEeeCCC
Q psy13076 408 FTGSHDGFITRWNAKT 423 (423)
Q Consensus 408 ~s~s~D~~i~~W~~~~ 423 (423)
++|+.||+|++|++++
T Consensus 325 ~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 325 FAGFTDGVIRTFSFET 340 (343)
T ss_dssp EEEETTSEEEEEEEEE
T ss_pred EEecCCceEEEEEEEc
Confidence 9999999999999764
No 19
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.4e-43 Score=332.91 Aligned_cols=279 Identities=18% Similarity=0.242 Sum_probs=245.2
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT 88 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~ 88 (423)
++++++++.++++|+.||.|++||+.+ .+...++++|.++|.+++|+|++++|++|+.|++|++||+++++++.
T Consensus 113 ~~~~~p~~~~l~s~s~Dg~i~vwd~~~-~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~----- 186 (410)
T 1vyh_C 113 RVIFHPVFSVMVSASEDATIKVWDYET-GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR----- 186 (410)
T ss_dssp EEEECSSSSEEEEEESSSCEEEEETTT-CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE-----
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCC-CcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE-----
Confidence 456667999999999999999999976 45677999999999999999999999999999999999997654332
Q ss_pred CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEE
Q psy13076 89 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 168 (423)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~ 168 (423)
.+.+|...|.+++|+|++.++++|+.|++|++||+.++....
T Consensus 187 -------------------------------------~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~- 228 (410)
T 1vyh_C 187 -------------------------------------TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK- 228 (410)
T ss_dssp -------------------------------------CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-
T ss_pred -------------------------------------EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-
Confidence 345788999999999999999999999999999998877654
Q ss_pred eeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCC----------------
Q psy13076 169 NEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRP---------------- 232 (423)
Q Consensus 169 ~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------- 232 (423)
.+..+...|.+++|+|++..+++++.+. ...+|+..++.....+..|...+.++.|+|+..
T Consensus 229 -~~~~h~~~v~~~~~~~~g~~l~s~s~D~--~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (410)
T 1vyh_C 229 -TFTGHREWVRMVRPNQDGTLIASCSNDQ--TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 305 (410)
T ss_dssp -EEECCSSCEEEEEECTTSSEEEEEETTS--CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred -EEeCCCccEEEEEECCCCCEEEEEcCCC--eEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccC
Confidence 3445678899999999999988877554 457888888888888889999999999999632
Q ss_pred ---eeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCe
Q psy13076 233 ---FRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGV 309 (423)
Q Consensus 233 ---~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i 309 (423)
..+++|+.|+.|++||.........+..|...|.+++|+|+|++|++|+.||.|++||..+++.+..+. +|...|
T Consensus 306 ~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~--~h~~~v 383 (410)
T 1vyh_C 306 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN--AHEHFV 383 (410)
T ss_dssp --CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE--CCSSCE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc--CCCCcE
Confidence 258999999999999998888888888999999999999999999999999999999999988877774 689999
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEecC
Q psy13076 310 YAVAWKPDGTQLLTASGDKTCKLWDIE 336 (423)
Q Consensus 310 ~~l~~~~~~~~l~s~s~d~~i~iwd~~ 336 (423)
++++|+|++++|++|+.|++|++|+++
T Consensus 384 ~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 384 TSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999999999999999863
No 20
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=9.2e-44 Score=329.36 Aligned_cols=316 Identities=16% Similarity=0.195 Sum_probs=224.2
Q ss_pred CCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecC------CCceEEeecCCcceeecccCCC
Q psy13076 16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSH------DGFITRWNAKTEYIFATLPRTQ 89 (423)
Q Consensus 16 ~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~------D~~i~vW~~~~~~~~~~~~~~~ 89 (423)
+.| +.++.+.....|++. .....+|++.|++++|+|||++|+|||. |++|++|+..++....
T Consensus 17 ~~~-~~~~g~~~~~~w~~p-----~~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~------ 84 (357)
T 4g56_B 17 NLY-FQSNGSSKGSAWGRP-----VTAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE------ 84 (357)
T ss_dssp -----------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG------
T ss_pred ceE-EecCCCccccccCCC-----CCCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce------
Confidence 444 445666777888763 2244679999999999999999999997 5566666655432111
Q ss_pred CCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEe
Q psy13076 90 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN 169 (423)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 169 (423)
.......+|...|.+++|+|++++ ++++.|++|++||+.+++.....
T Consensus 85 --------------------------------~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~ 131 (357)
T 4g56_B 85 --------------------------------SLCTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVN 131 (357)
T ss_dssp --------------------------------GGCSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCC
T ss_pred --------------------------------eEecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEE
Confidence 111223468889999999999865 45778999999998765432211
Q ss_pred eecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcC
Q psy13076 170 EFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEG 249 (423)
Q Consensus 170 ~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~ 249 (423)
.+ ...+|...|.+++|+|++.+ +++++.|+.|++||.
T Consensus 132 ~~------------------------------------------~~~~h~~~V~~v~~spdg~~-l~sgs~dg~v~iwd~ 168 (357)
T 4g56_B 132 KF------------------------------------------AKYEHDDIVKTLSVFSDGTQ-AVSGGKDFSVKVWDL 168 (357)
T ss_dssp CE------------------------------------------EECCCSSCEEEEEECSSSSE-EEEEETTSCEEEEET
T ss_pred ee------------------------------------------ccCCCCCCEEEEEECCCCCE-EEEEeCCCeEEEEEC
Confidence 10 01134445555556655553 778899999999999
Q ss_pred CCceeeeeccccccCeEEEEECCCCC-EEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCC-CeEEEEeCC
Q psy13076 250 PPFKFKMTKQEHSRFVQAVRYSPSGS-HFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDG-TQLLTASGD 327 (423)
Q Consensus 250 ~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~s~s~d 327 (423)
...+....+..|...|++++|+|++. ++++++.||.|++||.++++....+....|...+.+++|+|++ .+|++|+.|
T Consensus 169 ~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d 248 (357)
T 4g56_B 169 SQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDET 248 (357)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESS
T ss_pred CCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecc
Confidence 88888888889999999999999985 7899999999999999998877666555677889999999975 688899999
Q ss_pred CcEEEEecCCcceeeeeeeCceeEeeEEEEEecC-cEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecC-CCC
Q psy13076 328 KTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQG-DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSP-DRG 405 (423)
Q Consensus 328 ~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g-~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp-~~~ 405 (423)
+.|++||+++++.+..+... ......+.+.+++ .+|++++.|+.|++||+++.+ +....+|.++|++++|+| |++
T Consensus 249 ~~i~~wd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~--~~~~~~H~~~V~~vafsP~d~~ 325 (357)
T 4g56_B 249 GNVSLVNIKNPDSAQTSAVH-SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE--VFRDLSHRDFVTGVAWSPLDHS 325 (357)
T ss_dssp SCEEEEESSCGGGCEEECCC-SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE--EEEECCCSSCEEEEEECSSSTT
T ss_pred cceeEEECCCCcEeEEEecc-ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc--EeEECCCCCCEEEEEEeCCCCC
Confidence 99999999999887776432 2334456666776 578899999999999998753 334568999999999999 789
Q ss_pred eEEEecCCCcEEEeeCC
Q psy13076 406 TVFTGSHDGFITRWNAK 422 (423)
Q Consensus 406 ~l~s~s~D~~i~~W~~~ 422 (423)
+|+|+|.|++|++|++.
T Consensus 326 ~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 326 KFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EEEEEETTSCEEEEECC
T ss_pred EEEEEcCCCeEEEEECC
Confidence 99999999999999975
No 21
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.5e-43 Score=316.58 Aligned_cols=292 Identities=21% Similarity=0.284 Sum_probs=236.3
Q ss_pred CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEe
Q psy13076 38 TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRN 117 (423)
Q Consensus 38 ~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 117 (423)
+..++|++|.++|.+++|+|++++|+||+.||+|++||++++..+.
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---------------------------------- 49 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---------------------------------- 49 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE----------------------------------
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE----------------------------------
Confidence 4567899999999999999999999999999999999998764432
Q ss_pred cCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC
Q psy13076 118 IENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR 197 (423)
Q Consensus 118 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~ 197 (423)
.+.+|...|.+++|+|+++++++|+.|++|++||+.+++.... +..+...|.+++|+|++
T Consensus 50 --------~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~---------- 109 (304)
T 2ynn_A 50 --------SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD--FEAHPDYIRSIAVHPTK---------- 109 (304)
T ss_dssp --------EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE--EECCSSCEEEEEECSSS----------
T ss_pred --------EeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEE--EeCCCCcEEEEEEcCCC----------
Confidence 2346778899999999999999999999999999987665432 33344555555555554
Q ss_pred ceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc-eeeeeccccccCeEEEEECC-CCC
Q psy13076 198 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF-KFKMTKQEHSRFVQAVRYSP-SGS 275 (423)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~-~~~~~~~~~~~~i~~l~~s~-~g~ 275 (423)
++ +++++.|++|++|+.... .....+..|...|.+++|+| ++.
T Consensus 110 ----------------------------------~~-l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 154 (304)
T 2ynn_A 110 ----------------------------------PY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154 (304)
T ss_dssp ----------------------------------SE-EEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTT
T ss_pred ----------------------------------CE-EEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCC
Confidence 32 678899999999997644 45566788999999999999 578
Q ss_pred EEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECC--CCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEee
Q psy13076 276 HFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP--DGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQ 353 (423)
Q Consensus 276 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~--~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~ 353 (423)
+|++|+.|+.|++||+.++.....+. ..|...+..++|+| ++++|++++.|++|++||+++++++..+..+ .....
T Consensus 155 ~l~sgs~D~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h-~~~v~ 232 (304)
T 2ynn_A 155 TFASGCLDRTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH-MSNVS 232 (304)
T ss_dssp EEEEEETTSEEEEEETTCSSCSEEEE-CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEE
T ss_pred EEEEEeCCCeEEEEECCCCCccceec-cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC-CCCEE
Confidence 99999999999999998776655443 24667889999987 7789999999999999999999888877533 23344
Q ss_pred EEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCC--eEEEecCCCcEEEeeCC
Q psy13076 354 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRG--TVFTGSHDGFITRWNAK 422 (423)
Q Consensus 354 ~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~--~l~s~s~D~~i~~W~~~ 422 (423)
.+.+.+++..|++++.||.|++||..+. ...+.+..|...+++++|+|+++ +|++|+.|| +.+|++.
T Consensus 233 ~~~~~p~~~~l~s~s~Dg~i~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~ 301 (304)
T 2ynn_A 233 FAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLG 301 (304)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTC-CEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCC-ceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEec
Confidence 5666789999999999999999999875 45678889999999999999886 577777665 6666653
No 22
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-43 Score=322.78 Aligned_cols=301 Identities=19% Similarity=0.301 Sum_probs=222.0
Q ss_pred CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEe
Q psy13076 38 TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRN 117 (423)
Q Consensus 38 ~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 117 (423)
+++.+|++|.++|.+++|+|+ +|+||+.|++|++||++++...
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~----------------------------------- 47 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFT----------------------------------- 47 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCE-----------------------------------
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeE-----------------------------------
Confidence 456789999999999999987 9999999999999998753110
Q ss_pred cCCCcccccc-c-CCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEc
Q psy13076 118 IENPAISDIY-T-EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGE 195 (423)
Q Consensus 118 ~~~~~~~~~~-~-~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~ 195 (423)
....+ . +|...|++++|+|++++|++++.|++|++||.+...... .
T Consensus 48 -----~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~---~------------------------ 95 (330)
T 2hes_X 48 -----LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRT---F------------------------ 95 (330)
T ss_dssp -----EEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC----------C------------------------
T ss_pred -----EEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcc---c------------------------
Confidence 00111 2 389999999999999999999999999999975321000 0
Q ss_pred CCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC----CceeeeeccccccCeEEEEEC
Q psy13076 196 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP----PFKFKMTKQEHSRFVQAVRYS 271 (423)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~----~~~~~~~~~~~~~~i~~l~~s 271 (423)
....+..+.+|...|.+++|+|++.+ +++++.|++|++|+.. ..+....+..|...|.+++|+
T Consensus 96 ------------~~~~~~~~~~h~~~V~~v~~sp~g~~-las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 96 ------------EMDLLAIIEGHENEVKGVAWSNDGYY-LATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162 (330)
T ss_dssp ------------CCEEEEEEC----CEEEEEECTTSCE-EEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred ------------cceeEEEEcCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence 00011223456667788888887764 8899999999999973 234555677899999999999
Q ss_pred CCCCEEEEEEecCeEEEEECCCc--cceecccccccCCCeEEEEECCC--CCeEEEEeCCCcEEEEecCCc--------c
Q psy13076 272 PSGSHFASAGFDGKVFLYDGASA--DLVSELGNPAHKGGVYAVAWKPD--GTQLLTASGDKTCKLWDIETK--------S 339 (423)
Q Consensus 272 ~~g~~l~s~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~i~~l~~~~~--~~~l~s~s~d~~i~iwd~~~~--------~ 339 (423)
|++.+|++|+.|+.|++||..++ +.+..+ .+|.+.|.+++|+|+ +.+|++++.|++|++||+..+ .
T Consensus 163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 163 PSEALLASSSYDDTVRIWKDYDDDWECVAVL--NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp SSSSEEEEEETTSCEEEEEEETTEEEEEEEE--CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCCeeEEEEc--cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence 99999999999999999998765 344444 469999999999998 678999999999999998754 2
Q ss_pred eeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCC-Cce-EEeccCCC-ceeEEEecC--CCCeEEEecCCC
Q psy13076 340 AVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPS-TPI-RVIKGHNK-PITALALSP--DRGTVFTGSHDG 414 (423)
Q Consensus 340 ~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~-~~~-~~~~~h~~-~v~~i~~sp--~~~~l~s~s~D~ 414 (423)
+...+...+......+... .+..+++++.||.+++|+..+.+ ... ....+|.. .|++++|+| ++++|+|||.||
T Consensus 241 ~~~~~~~~h~~~v~~v~~s-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWG-FNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp EEEECCSCCSSCEEEEEEC-TTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred EeeecccccccceEEEEEc-CCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence 2222221122223333344 45588999999999999987653 122 23468887 899999999 789999999999
Q ss_pred cEEEeeCCC
Q psy13076 415 FITRWNAKT 423 (423)
Q Consensus 415 ~i~~W~~~~ 423 (423)
+|++||+++
T Consensus 320 ~v~~W~~~~ 328 (330)
T 2hes_X 320 IVNFWSLEK 328 (330)
T ss_dssp EEEEEEC--
T ss_pred cEEEEEecc
Confidence 999999863
No 23
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.7e-43 Score=322.36 Aligned_cols=299 Identities=16% Similarity=0.157 Sum_probs=226.6
Q ss_pred ccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcc
Q psy13076 44 KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAI 123 (423)
Q Consensus 44 ~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 123 (423)
..|.+.|.+++|+|||++|++++ |+++|+||............ .....
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~-------------------------------~~~~~ 74 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAA-------------------------------PNEGF 74 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGT-------------------------------TCGGG
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeecccccc-------------------------------CCcce
Confidence 45788899999999999998887 88999998432110000000 00000
Q ss_pred cccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEe--eecCCCCCeeEEEECCCCCeEEEEEcCCceee
Q psy13076 124 SDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN--EFHPIGGPIKDIAWSPDNQRMVVVGEGRERFG 201 (423)
Q Consensus 124 ~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~ 201 (423)
......|...|.+++|+|++ .+++|+.||+|+|||+.+++..... ....+.+.|.+++|+
T Consensus 75 ~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~s----------------- 136 (344)
T 4gqb_B 75 CSAGVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVL----------------- 136 (344)
T ss_dssp CSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEEC-----------------
T ss_pred eeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEEC-----------------
Confidence 11122456789999999985 6889999999999999876543221 222334444555544
Q ss_pred EEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCC-EEEEE
Q psy13076 202 HVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGS-HFASA 280 (423)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~s~ 280 (423)
|++.+ +++++.|++|++||....+....+..|...|.+++|+|++. +|+++
T Consensus 137 ---------------------------pdg~~-l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~ 188 (344)
T 4gqb_B 137 ---------------------------SSGTQ-AVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSC 188 (344)
T ss_dssp ---------------------------TTSSE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred ---------------------------CCCCE-EEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeee
Confidence 44443 77889999999999998888888999999999999999985 78999
Q ss_pred EecCeEEEEECCCccceecccccccCCCeEEEEECCC-CCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEe
Q psy13076 281 GFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPD-GTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW 359 (423)
Q Consensus 281 s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~ 359 (423)
+.|+.|++||.++++....+....|...+.+++|+|+ +++|++|+.|++|++||+++++++.++..+ ......+.+.+
T Consensus 189 s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h-~~~v~~v~fsp 267 (344)
T 4gqb_B 189 SEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVH-SQCVTGLVFSP 267 (344)
T ss_dssp ETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECC-SSCEEEEEECS
T ss_pred ccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCC-CCCEEEEEEcc
Confidence 9999999999999988877765566778999999995 568899999999999999999988877533 33345566677
Q ss_pred cC-cEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCe-EEEecCCCcEEEeeCCC
Q psy13076 360 QG-DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGT-VFTGSHDGFITRWNAKT 423 (423)
Q Consensus 360 ~g-~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~-l~s~s~D~~i~~W~~~~ 423 (423)
+| .+|++++.|+.|++||..+.+ +..+.+|.+.|++++|+|+++. |+|+|.|++|++|++.+
T Consensus 268 ~g~~~lasgs~D~~i~vwd~~~~~--~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 268 HSVPFLASLSEDCSLAVLDSSLSE--LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp SSSCCEEEEETTSCEEEECTTCCE--EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred CCCeEEEEEeCCCeEEEEECCCCc--EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 87 468899999999999998753 4567899999999999999875 67999999999999754
No 24
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.5e-42 Score=316.38 Aligned_cols=273 Identities=21% Similarity=0.363 Sum_probs=237.3
Q ss_pred eCCEEEEEeccceEEEEeccCCCC-ceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCc
Q psy13076 15 QGDYLLTVSLSGFISYLDVNNPST-PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQP 93 (423)
Q Consensus 15 ~~~~~~~~~~dg~i~~~d~~~~~~-~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~ 93 (423)
++.+|++|+.||.|++||++.+.. ....++||..+|.+++|++++++++||+.|++|++||+++++.+..
T Consensus 47 ~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~--------- 117 (321)
T 3ow8_A 47 NSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKS--------- 117 (321)
T ss_dssp --CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE---------
T ss_pred CCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEE---------
Confidence 477999999999999999875432 3446899999999999999999999999999999999987654332
Q ss_pred eEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecC
Q psy13076 94 IVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHP 173 (423)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 173 (423)
+..|...+.+++|+|+++++++++.|+.|++||+++.+.... +..
T Consensus 118 ---------------------------------~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~--~~~ 162 (321)
T 3ow8_A 118 ---------------------------------IDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS--LDT 162 (321)
T ss_dssp ---------------------------------EECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEE--EEC
T ss_pred ---------------------------------EeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE--ecC
Confidence 234555677899999999999999999999999988765543 334
Q ss_pred CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce
Q psy13076 174 IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK 253 (423)
Q Consensus 174 ~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~ 253 (423)
+...+.+++|+|+++++++++.+. ...+|+..+++.+..+.+|..+|.+++|+|++.+ +++++.|+.|++|+.....
T Consensus 163 ~~~~v~~~~~spdg~~lasg~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~-l~s~s~dg~i~iwd~~~~~ 239 (321)
T 3ow8_A 163 RGKFILSIAYSPDGKYLASGAIDG--IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQL-LVTASDDGYIKIYDVQHAN 239 (321)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTS--CEEEEETTTTEEEEEECCCSSCCCEEEECTTSCE-EEEECTTSCEEEEETTTCC
T ss_pred CCceEEEEEECCCCCEEEEEcCCC--eEEEEECCCCcEEEEEcccCCceeEEEEcCCCCE-EEEEcCCCeEEEEECCCcc
Confidence 557899999999999998877553 4578888888888889999999999999999875 8999999999999998877
Q ss_pred eeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEE
Q psy13076 254 FKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLW 333 (423)
Q Consensus 254 ~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iw 333 (423)
....+..|...|.+++|+|+|++|++++.|+.|++||+.+++.+..+. .|...|.+++|+|++++|++++.|++|++|
T Consensus 240 ~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~h~~~v~~v~~s~~g~~l~s~~~d~~i~vw 317 (321)
T 3ow8_A 240 LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF--DHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317 (321)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc--CCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 777888999999999999999999999999999999999998887774 588999999999999999999999999999
Q ss_pred ecC
Q psy13076 334 DIE 336 (423)
Q Consensus 334 d~~ 336 (423)
|..
T Consensus 318 d~p 320 (321)
T 3ow8_A 318 DCP 320 (321)
T ss_dssp ECC
T ss_pred eCC
Confidence 964
No 25
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-44 Score=339.56 Aligned_cols=363 Identities=13% Similarity=0.178 Sum_probs=270.5
Q ss_pred eeeEEEEeCC-EEEEE----------eccceEEEEeccCCC--CceeecccccCceeEEEEeCCCCeEEEecCCCceEEe
Q psy13076 8 QQVSCLWQGD-YLLTV----------SLSGFISYLDVNNPS--TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRW 74 (423)
Q Consensus 8 ~~~~~~~~~~-~~~~~----------~~dg~i~~~d~~~~~--~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW 74 (423)
.++++++||+ +++++ +.||.|++||+.++. +++..+ +|.++|.+++|+|++++|++|+.|+.|++|
T Consensus 16 ~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw 94 (416)
T 2pm9_A 16 ATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELY 94 (416)
T ss_dssp CBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEE
T ss_pred ceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEe
Confidence 3566677887 99999 899999999997644 234333 589999999999999999999999999999
Q ss_pred ecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCC-CCEEEEEccCC
Q psy13076 75 NAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS-GFYIASGDISG 153 (423)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~~~d~ 153 (423)
|+.+... .......+.+|...|++++|+|+ +.++++++.|+
T Consensus 95 ~~~~~~~--------------------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 136 (416)
T 2pm9_A 95 STNEANN--------------------------------------AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNG 136 (416)
T ss_dssp CCSSTTS--------------------------------------CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSS
T ss_pred ecccccc--------------------------------------cccchhhccCCccceEEEEEcCCCCCEEEEEcCCC
Confidence 9875210 00122345679999999999998 89999999999
Q ss_pred cEEEEEcCCCc------eeEE-eeecCCCCCeeEEEECCCC-CeEEEEEcCCceeeEEEeecCCcceecccCC------C
Q psy13076 154 KVRIWDTVNKE------HILK-NEFHPIGGPIKDIAWSPDN-QRMVVVGEGRERFGHVFMSETGTSVGEISGQ------S 219 (423)
Q Consensus 154 ~i~vwd~~~~~------~~~~-~~~~~~~~~v~~v~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 219 (423)
+|++||+.+.+ .... .....+..+|.+++|+|++ ..+++++. +....+|+...+..+..+..+ .
T Consensus 137 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 214 (416)
T 2pm9_A 137 EIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS--SNFASIWDLKAKKEVIHLSYTSPNSGIK 214 (416)
T ss_dssp CEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS--SSCEEEEETTTTEEEEEECCCCCSSCCC
T ss_pred eEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcC--CCCEEEEECCCCCcceEEeccccccccC
Confidence 99999998765 2211 1223456789999999994 55555443 334578888887777776665 7
Q ss_pred cceeEEEEecCCCeeEEEEeCCC---eEEEEcCCCc-eeeeecc-ccccCeEEEEECC-CCCEEEEEEecCeEEEEECCC
Q psy13076 220 KPINSCDFKPSRPFRIITGSEDN---TIAVFEGPPF-KFKMTKQ-EHSRFVQAVRYSP-SGSHFASAGFDGKVFLYDGAS 293 (423)
Q Consensus 220 ~~i~~~~~~~~~~~~~~s~s~d~---~i~~~~~~~~-~~~~~~~-~~~~~i~~l~~s~-~g~~l~s~s~dg~i~vwd~~~ 293 (423)
..+.+++|+|++...+++++.|+ .|++|+.... .....+. .|...|.+++|+| ++++|++++.||.|++||.++
T Consensus 215 ~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~ 294 (416)
T 2pm9_A 215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES 294 (416)
T ss_dssp CCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS
T ss_pred CceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC
Confidence 88999999999877799999998 9999998764 4445566 7889999999999 899999999999999999999
Q ss_pred ccceecccccccCCCeEEEEECCCC-CeEEEEeCCCcEEEEecCCcceeeeeeeCc-eeEeeEEEEEecCcEEEEEeCCC
Q psy13076 294 ADLVSELGNPAHKGGVYAVAWKPDG-TQLLTASGDKTCKLWDIETKSAVSEFLMGN-QVEDQQVSCLWQGDYLLTVSLSG 371 (423)
Q Consensus 294 ~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~ 371 (423)
++.+..+. .|...|.+++|+|++ ++|++++.|++|++||+.+.+......... ........+...+..++..+..+
T Consensus 295 ~~~~~~~~--~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (416)
T 2pm9_A 295 AEQLSQFP--ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPS 372 (416)
T ss_dssp CCEEEEEE--CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCC
T ss_pred Cccceeec--CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccc
Confidence 98877764 588899999999999 899999999999999998775433221100 00000000011111111111111
Q ss_pred cEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076 372 FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423 (423)
Q Consensus 372 ~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~ 423 (423)
. +. ......|..++++++|+|++++|++++.|+.|++|+++|
T Consensus 373 ~---~~-------~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 373 V---FH-------LQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp S---SC-------CCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred c---cc-------ccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 1 00 122345888999999999999999999999999999876
No 26
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.1e-42 Score=354.55 Aligned_cols=393 Identities=17% Similarity=0.227 Sum_probs=319.2
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT 88 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~ 88 (423)
+++++|||.+||+++.||.|++||+.+ .+.+..+.+|.++|.+++|+|++++|++|+.||.|++||+++++....+..
T Consensus 18 ~i~~sp~~~~la~~~~~g~v~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~- 95 (814)
T 3mkq_A 18 GIDFHPTEPWVLTTLYSGRVEIWNYET-QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA- 95 (814)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC-
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCC-CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEec-
Confidence 466667999999999999999999976 556778999999999999999999999999999999999999887776643
Q ss_pred CCCCceEEeeCCCCCeEEEec-CCeEEEEecCCC-cccccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCce
Q psy13076 89 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENP-AISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEH 165 (423)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~-~~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~ 165 (423)
+.+....+.++|++..++..+ +..+.+|+++++ .....+.+|...|.+++|+| ++.++++++.|++|++||+.+...
T Consensus 96 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 175 (814)
T 3mkq_A 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP 175 (814)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC
T ss_pred CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 345566788999998777654 679999999876 67788899999999999999 899999999999999999977655
Q ss_pred eEEeeecCCCCCeeEEEECC--CCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCe
Q psy13076 166 ILKNEFHPIGGPIKDIAWSP--DNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNT 243 (423)
Q Consensus 166 ~~~~~~~~~~~~v~~v~~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~ 243 (423)
...... ....++..++|+| ++..+++++.+ ....+|+...+..+..+..|...+.++.|+|+++. +++++.|+.
T Consensus 176 ~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d--g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~ 251 (814)
T 3mkq_A 176 NFTLTT-GQERGVNYVDYYPLPDKPYMITASDD--LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI-IISGSEDGT 251 (814)
T ss_dssp SEEEEC-CCTTCCCEEEECCSTTCCEEEEECTT--SEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSE-EEEEETTSC
T ss_pred eeEEec-CCCCCEEEEEEEECCCCCEEEEEeCC--CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE-EEEEeCCCe
Confidence 433222 2346789999999 88887776544 34677888888888888889999999999999885 889999999
Q ss_pred EEEEcCCCceeeeeccccccCeEEEEECCCCCE-EEEEEecCeEEEEECCCccceeccc---------------------
Q psy13076 244 IAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH-FASAGFDGKVFLYDGASADLVSELG--------------------- 301 (423)
Q Consensus 244 i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~-l~s~s~dg~i~vwd~~~~~~~~~~~--------------------- 301 (423)
|++|+....+.......+...+.+++|+|+|+. +++++.|+.+.+|+.........+.
T Consensus 252 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 331 (814)
T 3mkq_A 252 LKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTA 331 (814)
T ss_dssp EEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEE
T ss_pred EEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeee
Confidence 999998887777778888889999999999973 3455567778888865432111110
Q ss_pred --------------------ccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecC
Q psy13076 302 --------------------NPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQG 361 (423)
Q Consensus 302 --------------------~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g 361 (423)
...+...+.+++|+|+|++|++++ |+.+.+|++....... ......+..+++|
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~------~~~i~~~~~spdg 404 (814)
T 3mkq_A 332 VIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKA------FGKCQDFVWGPDS 404 (814)
T ss_dssp ECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE------EEECSEEEECTTS
T ss_pred ecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccC------CCceEEEEEeCCC
Confidence 012344578999999999999988 8999999986543321 1233355666799
Q ss_pred cEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCC---CeEEEecCCCcEEEeeCCC
Q psy13076 362 DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDR---GTVFTGSHDGFITRWNAKT 423 (423)
Q Consensus 362 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~---~~l~s~s~D~~i~~W~~~~ 423 (423)
.++++++.++.+++|+ .+.+|...+.+++|+|++ ++|++++.|+.|++||+++
T Consensus 405 ~~la~~~~~g~v~l~~---------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~ 460 (814)
T 3mkq_A 405 NSYALIDETGQIKYYK---------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDN 460 (814)
T ss_dssp SCEEEECTTCCEEEEE---------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTT
T ss_pred CeEEEEeCCCcEEEEE---------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCc
Confidence 9999999999999995 245788899999999998 6899999999999999864
No 27
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-42 Score=324.16 Aligned_cols=350 Identities=13% Similarity=0.177 Sum_probs=271.1
Q ss_pred eEEEEeccCCCCceeecc--cccCceeEEEEeCCCC-eEEEecCCCceEEeec----CCcce------eecccCCCCCCc
Q psy13076 27 FISYLDVNNPSTPIRVIK--GHNKPITALALSPDRG-TVFTGSHDGFITRWNA----KTEYI------FATLPRTQRGQP 93 (423)
Q Consensus 27 ~i~~~d~~~~~~~~~~~~--gh~~~V~~l~~~~~~~-~l~sg~~D~~i~vW~~----~~~~~------~~~~~~~~~~~~ 93 (423)
.+.+|++.. ....++ .|.++|.+++|+|+++ +|++|+.|+.|++||+ .++.. ...+...
T Consensus 26 ~~~~~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~----- 97 (425)
T 1r5m_A 26 IDSSDDLDG---FVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHP----- 97 (425)
T ss_dssp --------C---CCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECC-----
T ss_pred ccccccchh---hhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccc-----
Confidence 345677643 233444 4669999999999999 9999999999999999 66542 1111000
Q ss_pred eEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecC
Q psy13076 94 IVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHP 173 (423)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 173 (423)
-.......+|...|++++|+|++++|++++.|+.|++|| .+.+.. ..+..
T Consensus 98 ---------------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~--~~~~~ 147 (425)
T 1r5m_A 98 ---------------------------FALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALL--NVLNF 147 (425)
T ss_dssp ---------------------------CCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEE--EEECC
T ss_pred ---------------------------ccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCee--eeccC
Confidence 000012345788999999999999999999999999999 344433 23445
Q ss_pred CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcc---------------eeEEEEecCCCeeEEEE
Q psy13076 174 IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKP---------------INSCDFKPSRPFRIITG 238 (423)
Q Consensus 174 ~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------i~~~~~~~~~~~~~~s~ 238 (423)
+..+|.+++|+|+++.+++++.+. ...+|+...+..+..+..+... +.++.|+|++ .++++
T Consensus 148 ~~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 223 (425)
T 1r5m_A 148 HRAPIVSVKWNKDGTHIISMDVEN--VTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIP 223 (425)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTC--CEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT--EEEEE
T ss_pred CCccEEEEEECCCCCEEEEEecCC--eEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEE
Confidence 678899999999999998877543 3567888777777777666655 8899999975 37889
Q ss_pred eCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCC
Q psy13076 239 SEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDG 318 (423)
Q Consensus 239 s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 318 (423)
+.++.|++|+....+.......|...|.+++|+|++++|++++.||.|++||..+++....+. .|...+.+++|+|++
T Consensus 224 ~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~ 301 (425)
T 1r5m_A 224 GPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY--GHSQSIVSASWVGDD 301 (425)
T ss_dssp CGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEEC--CCSSCEEEEEEETTT
T ss_pred cCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEec--CCCccEEEEEECCCC
Confidence 999999999988776666777889999999999999999999999999999999888776663 588899999999999
Q ss_pred CeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCC----------------
Q psy13076 319 TQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPS---------------- 382 (423)
Q Consensus 319 ~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~---------------- 382 (423)
+|++++.|+.|++||+++++.+..+... ......+.+.+++.+|++++.+|.|++|++.+..
T Consensus 302 -~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~ 379 (425)
T 1r5m_A 302 -KVISCSMDGSVRLWSLKQNTLLALSIVD-GVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNP 379 (425)
T ss_dssp -EEEEEETTSEEEEEETTTTEEEEEEECT-TCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------C
T ss_pred -EEEEEeCCCcEEEEECCCCcEeEecccC-CccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCc
Confidence 9999999999999999998887766532 2334456667799999999999999999997643
Q ss_pred ---CceEEeccCCC--ceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076 383 ---TPIRVIKGHNK--PITALALSPDRGTVFTGSHDGFITRWNAK 422 (423)
Q Consensus 383 ---~~~~~~~~h~~--~v~~i~~sp~~~~l~s~s~D~~i~~W~~~ 422 (423)
.++..+.+|.. +|++++|+|++++|++++.||.|++|+++
T Consensus 380 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 380 LPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 15677889977 99999999999999999999999999986
No 28
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.4e-42 Score=314.94 Aligned_cols=323 Identities=14% Similarity=0.197 Sum_probs=256.7
Q ss_pred eeeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC
Q psy13076 8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR 87 (423)
Q Consensus 8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~ 87 (423)
+.+++++||++++++..++.+..|+......++ ...+|.++|.+++|+|++++|++++ |+.|++||++++.....+.
T Consensus 13 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~- 89 (337)
T 1gxr_A 13 YSFHVTADGQMQPVPFPPDALIGPGIPRHARQI-NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVS- 89 (337)
T ss_dssp CEEEECSSSCEEECCCCTTSSSSTTCCSEEEEE-EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSE-
T ss_pred eEEEECCCCCEEEeecCCCcEeccccCCccccc-eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeee-
Confidence 457777899999998888877666544323333 3457999999999999999999999 9999999998653211110
Q ss_pred CCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeE
Q psy13076 88 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL 167 (423)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~ 167 (423)
.....+|...|.+++|+|+++++++++.|+.|++||+.+.+...
T Consensus 90 ------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~ 133 (337)
T 1gxr_A 90 ------------------------------------QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI 133 (337)
T ss_dssp ------------------------------------EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EE
T ss_pred ------------------------------------cccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcce
Confidence 00112588899999999999999999999999999998765333
Q ss_pred EeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEE
Q psy13076 168 KNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF 247 (423)
Q Consensus 168 ~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~ 247 (423)
...+..+...+.+++|+|+++ + +++++.|+.+++|
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~--------------------------------------------~-l~~~~~dg~v~~~ 168 (337)
T 1gxr_A 134 KAELTSSAPACYALAISPDSK--------------------------------------------V-CFSCCSDGNIAVW 168 (337)
T ss_dssp EEEEECSSSCEEEEEECTTSS--------------------------------------------E-EEEEETTSCEEEE
T ss_pred eeecccCCCceEEEEECCCCC--------------------------------------------E-EEEEeCCCcEEEE
Confidence 333333444555555555443 2 6677889999999
Q ss_pred cCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCC
Q psy13076 248 EGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD 327 (423)
Q Consensus 248 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d 327 (423)
+....+.......|...+.+++|+|+++++++++.||.|++||.++++....+ .+...+.+++|+|++++|++++.|
T Consensus 169 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~~ 245 (337)
T 1gxr_A 169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH---DFTSQIFSLGYCPTGEWLAVGMES 245 (337)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE---ECSSCEEEEEECTTSSEEEEEETT
T ss_pred eCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee---cCCCceEEEEECCCCCEEEEEcCC
Confidence 98887777778889999999999999999999999999999999998877665 367789999999999999999999
Q ss_pred CcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeE
Q psy13076 328 KTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTV 407 (423)
Q Consensus 328 ~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l 407 (423)
+.|++||+.+++..... .+......+...+++.++++++.+|.+++|++.+.... ....|..+|++++|+|++++|
T Consensus 246 ~~i~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l 321 (337)
T 1gxr_A 246 SNVEVLHVNKPDKYQLH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--FQSKESSSVLSCDISVDDKYI 321 (337)
T ss_dssp SCEEEEETTSSCEEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE--EEEECSSCEEEEEECTTSCEE
T ss_pred CcEEEEECCCCCeEEEc--CCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE--EEecCCCcEEEEEECCCCCEE
Confidence 99999999988754322 22333455666778999999999999999999886543 345689999999999999999
Q ss_pred EEecCCCcEEEeeC
Q psy13076 408 FTGSHDGFITRWNA 421 (423)
Q Consensus 408 ~s~s~D~~i~~W~~ 421 (423)
++++.||.|++|++
T Consensus 322 ~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 322 VTGSGDKKATVYEV 335 (337)
T ss_dssp EEEETTSCEEEEEE
T ss_pred EEecCCCeEEEEEE
Confidence 99999999999996
No 29
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.3e-42 Score=326.09 Aligned_cols=343 Identities=13% Similarity=0.171 Sum_probs=268.6
Q ss_pred eeeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC
Q psy13076 8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR 87 (423)
Q Consensus 8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~ 87 (423)
..+++++||++|++++.||.|++||+.+ .+....+++| ..+....|++++++|++|+.|+.|++||++++....
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---- 133 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFLFNTII-RDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE---- 133 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEEEECCS-EETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE----
T ss_pred cceeeeecCCeEEEEEcCCcEEEEEecc-cceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee----
Confidence 3688999999999999999999999875 3345566766 456666889999999999999999999987654322
Q ss_pred CCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeE
Q psy13076 88 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL 167 (423)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~ 167 (423)
.+.+|...|++++|+|++++|++++.|++|++||+.+.+...
T Consensus 134 --------------------------------------~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 175 (420)
T 3vl1_A 134 --------------------------------------IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR 175 (420)
T ss_dssp --------------------------------------ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE
T ss_pred --------------------------------------ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce
Confidence 345789999999999999999999999999999998776543
Q ss_pred EeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccC---CCcceeEEEEecCCCeeEEEEeCCCeE
Q psy13076 168 KNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISG---QSKPINSCDFKPSRPFRIITGSEDNTI 244 (423)
Q Consensus 168 ~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~s~s~d~~i 244 (423)
. +..+..+|.+++|+|+++.+++++.+. ...+|+..++..+..+.. +...+.++.+.|.....
T Consensus 176 ~--~~~h~~~v~~~~~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------- 241 (420)
T 3vl1_A 176 T--LIGHRATVTDIAIIDRGRNVLSASLDG--TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ---------- 241 (420)
T ss_dssp E--EECCSSCEEEEEEETTTTEEEEEETTS--CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS----------
T ss_pred E--EcCCCCcEEEEEEcCCCCEEEEEcCCC--cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce----------
Confidence 3 345667899999999988888766543 356777776666655553 44556666666543221
Q ss_pred EEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCC-eEEE
Q psy13076 245 AVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGT-QLLT 323 (423)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~s 323 (423)
....+...+.+++|+|+|+++++|+.||.|++||.++++....+. ..|...|.+++|+|+++ +|++
T Consensus 242 ------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~ 308 (420)
T 3vl1_A 242 ------------LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP-SKFTCSCNSLTVDGNNANYIYA 308 (420)
T ss_dssp ------------CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC-CTTSSCEEEEEECSSCTTEEEE
T ss_pred ------------eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc-cccCCCceeEEEeCCCCCEEEE
Confidence 122344567788999999999999999999999999988776654 35788999999999998 9999
Q ss_pred EeCCCcEEEEecCCcce-eeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCc--------eEEeccCCCc
Q psy13076 324 ASGDKTCKLWDIETKSA-VSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTP--------IRVIKGHNKP 394 (423)
Q Consensus 324 ~s~d~~i~iwd~~~~~~-i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~--------~~~~~~h~~~ 394 (423)
++.|+.|++||+++++. +..+...+......+ ..+++..+++++.|+.+++|++..+..+ ...+.+|...
T Consensus 309 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (420)
T 3vl1_A 309 GYENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDA 387 (420)
T ss_dssp EETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCC
T ss_pred EeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcc
Confidence 99999999999998754 555543232222222 3458899999999999999998874222 2346789999
Q ss_pred eeEEEecCCCC---eEEEecCCCcEEEeeCC
Q psy13076 395 ITALALSPDRG---TVFTGSHDGFITRWNAK 422 (423)
Q Consensus 395 v~~i~~sp~~~---~l~s~s~D~~i~~W~~~ 422 (423)
|.+++|+|+++ .|+++|.+|.+.+|+++
T Consensus 388 v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 388 VSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp CCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred eEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 99999999999 78888889999999986
No 30
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2e-41 Score=311.25 Aligned_cols=305 Identities=23% Similarity=0.329 Sum_probs=243.1
Q ss_pred ceeecccccCceeEEEEeCC-CCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEe
Q psy13076 39 PIRVIKGHNKPITALALSPD-RGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRN 117 (423)
Q Consensus 39 ~~~~~~gh~~~V~~l~~~~~-~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 117 (423)
+..+|+||+++|++|+|+|+ +++|+|||.|++|++||+++.+..
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~----------------------------------- 74 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN----------------------------------- 74 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC-----------------------------------
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc-----------------------------------
Confidence 34579999999999999997 579999999999999998764211
Q ss_pred cCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC
Q psy13076 118 IENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR 197 (423)
Q Consensus 118 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~ 197 (423)
.......+.+|...|.+++|+|+++++++++.|+.|++|+.......... ......+..+.+++++..+++++.+.
T Consensus 75 --~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~s~s~d~ 150 (340)
T 4aow_A 75 --YGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF--VGHTKDVLSVAFSSDNRQIVSGSRDK 150 (340)
T ss_dssp --SEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--ECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred --cceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeee--cCCCCceeEEEEeecCccceeecCCC
Confidence 01122356789999999999999999999999999999998876554332 33446788899999999998876544
Q ss_pred ceeeEEEeecCCcc-eecccCCCcceeEEEEecCCC-eeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCC
Q psy13076 198 ERFGHVFMSETGTS-VGEISGQSKPINSCDFKPSRP-FRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGS 275 (423)
Q Consensus 198 ~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~-~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~ 275 (423)
. ..+|+...... ......|...+..++|+++.. ..+++++.|+.|++|+....+....+..|...|++++|+|+|+
T Consensus 151 ~--~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~ 228 (340)
T 4aow_A 151 T--IKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS 228 (340)
T ss_dssp C--EEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred e--EEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCC
Confidence 3 34565443332 334567888999999988754 3578899999999999998888888889999999999999999
Q ss_pred EEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEE
Q psy13076 276 HFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQV 355 (423)
Q Consensus 276 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~ 355 (423)
+|++|+.||.|++||..+.+.+..+. +...+.+++|+|++.+ ++++.|+.|++||++++..+..+..
T Consensus 229 ~l~s~s~Dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~--------- 295 (340)
T 4aow_A 229 LCASGGKDGQAMLWDLNEGKHLYTLD---GGDIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQ--------- 295 (340)
T ss_dssp EEEEEETTCEEEEEETTTTEEEEEEE---CSSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECC---------
T ss_pred EEEEEeCCCeEEEEEeccCceeeeec---CCceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccc---------
Confidence 99999999999999999988777664 4567999999998755 5667799999999988766544321
Q ss_pred EEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076 356 SCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423 (423)
Q Consensus 356 ~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~ 423 (423)
........+|...|++++|+||+++|+||+.||+|++||++|
T Consensus 296 --------------------------~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 296 --------------------------EVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp --------------------------C-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred --------------------------cceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 111233568999999999999999999999999999999875
No 31
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.3e-41 Score=311.36 Aligned_cols=275 Identities=20% Similarity=0.226 Sum_probs=224.0
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcc----eeec
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEY----IFAT 84 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~----~~~~ 84 (423)
.+++++||++|++|+.||.|++||+.+ .+++..+.+|...|.+++|+|++++|++|+.|+.|++||+.+.. ....
T Consensus 60 ~~~~s~d~~~l~s~s~Dg~v~iWd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~ 138 (340)
T 1got_B 60 AMHWGTDSRLLLSASQDGKLIIWDSYT-TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE 138 (340)
T ss_dssp EEEECTTSSEEEEEETTTEEEEEETTT-CCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCC-CCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEE
Confidence 344455999999999999999999976 45677889999999999999999999999999999999998652 2222
Q ss_pred ccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCc
Q psy13076 85 LPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 164 (423)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~ 164 (423)
+.. +.+....+.+.++++.+..+.+..+++|+++++.....+.+|...|.+++|+|+++++++|+.|++|++||+.+..
T Consensus 139 ~~~-h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~ 217 (340)
T 1got_B 139 LAG-HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217 (340)
T ss_dssp EEC-CSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred ecC-CCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe
Confidence 222 2334445666777776666678899999999999999999999999999999999999999999999999997765
Q ss_pred eeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeE
Q psy13076 165 HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTI 244 (423)
Q Consensus 165 ~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i 244 (423)
... .+..+..+|.+++|+|++ .+ +++++.|++|
T Consensus 218 ~~~--~~~~h~~~v~~v~~~p~~--------------------------------------------~~-l~s~s~d~~v 250 (340)
T 1got_B 218 CRQ--TFTGHESDINAICFFPNG--------------------------------------------NA-FATGSDDATC 250 (340)
T ss_dssp EEE--EECCCSSCEEEEEECTTS--------------------------------------------SE-EEEEETTSCE
T ss_pred eEE--EEcCCcCCEEEEEEcCCC--------------------------------------------CE-EEEEcCCCcE
Confidence 432 223334445555555544 32 6788899999
Q ss_pred EEEcCCCceeeeecc--ccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEE
Q psy13076 245 AVFEGPPFKFKMTKQ--EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLL 322 (423)
Q Consensus 245 ~~~~~~~~~~~~~~~--~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 322 (423)
++||....+...... .+...|.+++|+|+|++|++|+.||.|++||..+++....+ .+|...|.+++|+|+|++|+
T Consensus 251 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~--~~h~~~v~~~~~s~dg~~l~ 328 (340)
T 1got_B 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL--AGHDNRVSCLGVTDDGMAVA 328 (340)
T ss_dssp EEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--ECCSSCEEEEEECTTSSCEE
T ss_pred EEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe--ecCCCcEEEEEEcCCCCEEE
Confidence 999987655443332 33457999999999999999999999999999988877766 46999999999999999999
Q ss_pred EEeCCCcEEEEe
Q psy13076 323 TASGDKTCKLWD 334 (423)
Q Consensus 323 s~s~d~~i~iwd 334 (423)
+|+.|++|+|||
T Consensus 329 s~s~D~~i~iWd 340 (340)
T 1got_B 329 TGSWDSFLKIWN 340 (340)
T ss_dssp EEETTSCEEEEC
T ss_pred EEcCCccEEecC
Confidence 999999999997
No 32
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=8.1e-42 Score=314.12 Aligned_cols=285 Identities=17% Similarity=0.204 Sum_probs=223.6
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccC---------CC-CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCC
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNN---------PS-TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 78 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~---------~~-~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~ 78 (423)
.+++++||++|++++ |+.+++||... +. ........|..+|.+++|+|++ .|++|+.||+|++||+++
T Consensus 35 ~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~ 112 (344)
T 4gqb_B 35 AARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWELDE 112 (344)
T ss_dssp EEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECT
T ss_pred EEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccC
Confidence 355667999999887 77777776321 11 1111233577899999999985 688999999999999987
Q ss_pred cceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEE
Q psy13076 79 EYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 158 (423)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vw 158 (423)
++....+ ...+.+|...|++++|+|+|++|++|+.|++|++|
T Consensus 113 ~~~~~~~--------------------------------------~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iw 154 (344)
T 4gqb_B 113 NETLIVS--------------------------------------KFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVW 154 (344)
T ss_dssp TSSCEEE--------------------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCceeEe--------------------------------------eccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 6432211 11245799999999999999999999999999999
Q ss_pred EcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceeccc--CCCcceeEEEEecCCCeeEE
Q psy13076 159 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS--GQSKPINSCDFKPSRPFRII 236 (423)
Q Consensus 159 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~ 236 (423)
|+++++.+. .+..+...|.+++|+|++..+++.+.. +...++|+..+++....+. .+...+.+++|+|.+...++
T Consensus 155 d~~~~~~~~--~~~~h~~~V~~~~~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 231 (344)
T 4gqb_B 155 DLAQQVVLS--SYRAHAAQVTCVAASPHKDSVFLSCSE-DNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV 231 (344)
T ss_dssp ETTTTEEEE--EECCCSSCEEEEEECSSCTTEEEEEET-TSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEE
T ss_pred ECCCCcEEE--EEcCcCCceEEEEecCCCCCceeeecc-ccccccccccccceeeeeecceeeccceeeeecCCCCcceE
Confidence 998877653 455667899999999998765443332 2346788888887776654 44557899999998877799
Q ss_pred EEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCC-CEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEEC
Q psy13076 237 TGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG-SHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWK 315 (423)
Q Consensus 237 s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~ 315 (423)
+|+.|+.|++||....+....+..|...|++++|+|+| ++|++|+.|+.|++||..+++... + .+|.+.|.+++|+
T Consensus 232 sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~--~~H~~~V~~v~~s 308 (344)
T 4gqb_B 232 FGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S--QAHRDFVRDATWS 308 (344)
T ss_dssp EEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E--CCCSSCEEEEEEC
T ss_pred EeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E--cCCCCCEEEEEEe
Confidence 99999999999998888778888999999999999998 589999999999999999887653 3 4799999999999
Q ss_pred CCCC-eEEEEeCCCcEEEEecCCcc
Q psy13076 316 PDGT-QLLTASGDKTCKLWDIETKS 339 (423)
Q Consensus 316 ~~~~-~l~s~s~d~~i~iwd~~~~~ 339 (423)
|+++ +|+++|.|++|++|++.+..
T Consensus 309 p~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 309 PLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp SSSTTEEEEEETTSCEEEEECCC--
T ss_pred CCCCeEEEEEcCCCeEEEEECCCCC
Confidence 9986 56789999999999998754
No 33
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.5e-41 Score=314.52 Aligned_cols=286 Identities=18% Similarity=0.238 Sum_probs=224.6
Q ss_pred eeeEEEEeCCEEEEEec------cceEEEEeccCCCC---ceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCC
Q psy13076 8 QQVSCLWQGDYLLTVSL------SGFISYLDVNNPST---PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 78 (423)
Q Consensus 8 ~~~~~~~~~~~~~~~~~------dg~i~~~d~~~~~~---~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~ 78 (423)
..|+++|||++||+|+. ||.|++|+...... ......+|.+.|.+++|+|++. +++++.||+|++||+.+
T Consensus 46 ~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~ 124 (357)
T 4g56_B 46 GAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILE 124 (357)
T ss_dssp EEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC----
T ss_pred EEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccc
Confidence 35677789999999998 78899998754221 2234467999999999999875 55678899999999987
Q ss_pred cceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEE
Q psy13076 79 EYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 158 (423)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vw 158 (423)
++..... .....+|...|++++|+|++++|++++.|++|++|
T Consensus 125 ~~~~~~~--------------------------------------~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw 166 (357)
T 4g56_B 125 KESLLVN--------------------------------------KFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW 166 (357)
T ss_dssp ----CCC--------------------------------------CEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred cceeEEE--------------------------------------eeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 5432111 01234799999999999999999999999999999
Q ss_pred EcCCCceeEEeeecCCCCCeeEEEECCCCCeE-EEEEcCCceeeEEEeecCCcceeccc--CCCcceeEEEEecCCCeeE
Q psy13076 159 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRM-VVVGEGRERFGHVFMSETGTSVGEIS--GQSKPINSCDFKPSRPFRI 235 (423)
Q Consensus 159 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~ 235 (423)
|+.+++... .+..+...|.+++|+|++..+ ++++.+ ....+|+..++.....+. .+...+.+++|+|++...+
T Consensus 167 d~~~~~~~~--~~~~h~~~v~~v~~s~~~~~~~~s~~~d--g~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l 242 (357)
T 4g56_B 167 DLSQKAVLK--SYNAHSSEVNCVAACPGKDTIFLSCGED--GRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTF 242 (357)
T ss_dssp ETTTTEEEE--EECCCSSCEEEEEECTTCSSCEEEEETT--SCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEE
T ss_pred ECCCCcEEE--EEcCCCCCEEEEEEccCCCceeeeeccC--CceEEEECCCCceeeeeeeccccccccchhhhhcccceE
Confidence 998876554 344567889999999998754 444433 335677777776655443 4566799999999987779
Q ss_pred EEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCC-CEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEE
Q psy13076 236 ITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG-SHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW 314 (423)
Q Consensus 236 ~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~ 314 (423)
++++.|+.|++||....+....+..|...|++++|+|++ ++|++|+.|+.|++||.++++.+..+ +|.+.|++++|
T Consensus 243 a~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~vaf 319 (357)
T 4g56_B 243 ACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTGVAW 319 (357)
T ss_dssp EEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEEEEE
T ss_pred EEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEEEEE
Confidence 999999999999998877777888899999999999997 57999999999999999998877654 58999999999
Q ss_pred CC-CCCeEEEEeCCCcEEEEecCCcc
Q psy13076 315 KP-DGTQLLTASGDKTCKLWDIETKS 339 (423)
Q Consensus 315 ~~-~~~~l~s~s~d~~i~iwd~~~~~ 339 (423)
+| ++++|+|++.|++|++||+.+..
T Consensus 320 sP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 320 SPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp CSSSTTEEEEEETTSCEEEEECC---
T ss_pred eCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 99 79999999999999999997653
No 34
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.4e-41 Score=310.87 Aligned_cols=291 Identities=18% Similarity=0.278 Sum_probs=228.4
Q ss_pred eeeEEEEeCCEEEEEeccceEEEEeccCCCCc--eeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecc
Q psy13076 8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTP--IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATL 85 (423)
Q Consensus 8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~--~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~ 85 (423)
..+++++||++||+|+.||.|++||+..+... ....++|.++|.+++|+|++++|++|+.|++|++|+.+++..
T Consensus 20 ~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~---- 95 (345)
T 3fm0_A 20 WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF---- 95 (345)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E----
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe----
Confidence 35667779999999999999999999754321 223478999999999999999999999999999999865321
Q ss_pred cCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCce
Q psy13076 86 PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 165 (423)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~ 165 (423)
.....+.+|...|.+++|+|++++|++++.|++|++||+.+...
T Consensus 96 ------------------------------------~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~ 139 (345)
T 3fm0_A 96 ------------------------------------ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE 139 (345)
T ss_dssp ------------------------------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC
T ss_pred ------------------------------------EEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC
Confidence 11224568999999999999999999999999999999976543
Q ss_pred e-EEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCc--ceecccCCCcceeEEEEecCCCeeEEEEeCCC
Q psy13076 166 I-LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGT--SVGEISGQSKPINSCDFKPSRPFRIITGSEDN 242 (423)
Q Consensus 166 ~-~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~ 242 (423)
. ....+..+...|.+++|+|+++.+++++.+. ...+|+...+. ....+.+|...|.+++|+|++.+ +++++.|+
T Consensus 140 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~--~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~-l~s~s~D~ 216 (345)
T 3fm0_A 140 YECVSVLNSHTQDVKHVVWHPSQELLASASYDD--TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR-LASCSDDR 216 (345)
T ss_dssp EEEEEEECCCCSCEEEEEECSSSSCEEEEETTS--CEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSE-EEEEETTS
T ss_pred eEEEEEecCcCCCeEEEEECCCCCEEEEEeCCC--cEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCE-EEEEeCCC
Confidence 2 2334556678899999999999988877554 34677766553 34677889999999999999875 89999999
Q ss_pred eEEEEcCCC---------------ceeeeecc-ccccCeEEEEECCCCCEEEEEEecCeEEEEECCCcccee----cc--
Q psy13076 243 TIAVFEGPP---------------FKFKMTKQ-EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVS----EL-- 300 (423)
Q Consensus 243 ~i~~~~~~~---------------~~~~~~~~-~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~----~~-- 300 (423)
+|++|+... .+...... .|...|.+++|+|++.+|++++.|+.|++|+........ .+
T Consensus 217 ~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~ 296 (345)
T 3fm0_A 217 TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTA 296 (345)
T ss_dssp CEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEE
T ss_pred eEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEe
Confidence 999997411 11122222 377889999999999999999999999999976543110 01
Q ss_pred -cccccCCCeEEEEECCCC-CeEEEEeCCCcEEEEecCCccee
Q psy13076 301 -GNPAHKGGVYAVAWKPDG-TQLLTASGDKTCKLWDIETKSAV 341 (423)
Q Consensus 301 -~~~~~~~~i~~l~~~~~~-~~l~s~s~d~~i~iwd~~~~~~i 341 (423)
...+|...|.+++|+|++ .+|++++.|++|++|++.+++..
T Consensus 297 ~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 297 HLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp EETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred eecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 123689999999999998 59999999999999999887644
No 35
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.7e-40 Score=310.33 Aligned_cols=320 Identities=22% Similarity=0.358 Sum_probs=232.9
Q ss_pred EEEEeccCCCCce---eecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCe
Q psy13076 28 ISYLDVNNPSTPI---RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKN 104 (423)
Q Consensus 28 i~~~d~~~~~~~~---~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (423)
..+|+...+...- ....+|.++|.+++|+|++++|++|+ |+++++|++.++..+..+....... ..+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~-----~~~---- 111 (393)
T 1erj_A 42 YILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-----KDP---- 111 (393)
T ss_dssp EEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------
T ss_pred EEEECCCCCcccCceeEEecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccc-----ccc----
Confidence 3366654433211 12236999999999999999999986 7899999999887665543211000 000
Q ss_pred EEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEEC
Q psy13076 105 FLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWS 184 (423)
Q Consensus 105 ~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s 184 (423)
+. ........+...|++++|+|+|++|++|+.|++|++||+.+.+... .+..+...|.+++|+
T Consensus 112 --------------~~-~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~ 174 (393)
T 1erj_A 112 --------------EN-LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM--ILQGHEQDIYSLDYF 174 (393)
T ss_dssp ------------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEEC
T ss_pred --------------cc-ccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE--EEccCCCCEEEEEEc
Confidence 00 0000112344569999999999999999999999999997765432 223334445555555
Q ss_pred CCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccC
Q psy13076 185 PDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRF 264 (423)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~ 264 (423)
|+ +.. +++++.|+++++||....+...... +...
T Consensus 175 p~--------------------------------------------~~~-l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~ 208 (393)
T 1erj_A 175 PS--------------------------------------------GDK-LVSGSGDRTVRIWDLRTGQCSLTLS-IEDG 208 (393)
T ss_dssp TT--------------------------------------------SSE-EEEEETTSEEEEEETTTTEEEEEEE-CSSC
T ss_pred CC--------------------------------------------CCE-EEEecCCCcEEEEECCCCeeEEEEE-cCCC
Confidence 54 432 6778899999999987766554443 4567
Q ss_pred eEEEEECC-CCCEEEEEEecCeEEEEECCCccceecccc-----cccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076 265 VQAVRYSP-SGSHFASAGFDGKVFLYDGASADLVSELGN-----PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK 338 (423)
Q Consensus 265 i~~l~~s~-~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~-----~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~ 338 (423)
+.+++|+| +|++|++|+.||.|++||.++++.+..+.. .+|...|.+++|+|++++|++++.|++|++||+++.
T Consensus 209 v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 89999999 899999999999999999998877655421 368899999999999999999999999999999764
Q ss_pred ce------------eeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecC----
Q psy13076 339 SA------------VSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSP---- 402 (423)
Q Consensus 339 ~~------------i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp---- 402 (423)
.. ...+. ++......+...+++.+|++++.|+.+++||..++ .++..+.+|...|++++|+|
T Consensus 289 ~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~-~~~~~l~~h~~~v~~v~~~~~~~~ 366 (393)
T 1erj_A 289 NNKSDSKTPNSGTCEVTYI-GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQGHRNSVISVAVANGSSL 366 (393)
T ss_dssp ------------CEEEEEE-CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECSSCTT
T ss_pred CCcccccCCCCCcceEEEe-cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-eEEEEECCCCCCEEEEEecCCcCc
Confidence 32 22221 22223344566678999999999999999999885 45678899999999999986
Q ss_pred --CCCeEEEecCCCcEEEeeCC
Q psy13076 403 --DRGTVFTGSHDGFITRWNAK 422 (423)
Q Consensus 403 --~~~~l~s~s~D~~i~~W~~~ 422 (423)
++++|+|||.||+|++|+..
T Consensus 367 ~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 367 GPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp CTTCEEEEEEETTSEEEEEEEE
T ss_pred CCCCCEEEEECCCCcEEECccc
Confidence 68899999999999999964
No 36
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.8e-40 Score=329.33 Aligned_cols=332 Identities=31% Similarity=0.609 Sum_probs=278.3
Q ss_pred ccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcc
Q psy13076 44 KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAI 123 (423)
Q Consensus 44 ~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 123 (423)
..|.+.|.+++|+|++++|++++ |+.|++||++++.. ..+.
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~--------------------------------------~~~~ 55 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS--------------------------------------KVPP 55 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC--------------------------------------SSCS
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC--------------------------------------cccc
Confidence 36899999999999999999998 88999999876410 0012
Q ss_pred cccccCCcce-EEEEEECC--CCCEEEEEccCCcEEEEEcCCC------ceeEEeeecCCCCCeeEEEECCCCCeEEEEE
Q psy13076 124 SDIYTEHSCA-VNVAKYSP--SGFYIASGDISGKVRIWDTVNK------EHILKNEFHPIGGPIKDIAWSPDNQRMVVVG 194 (423)
Q Consensus 124 ~~~~~~h~~~-i~~~~~sp--~~~~l~s~~~d~~i~vwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~ 194 (423)
...+.+|... |++++|+| ++++|++++.|++|++||+.++ +......+..+..+|.+++|+|+++.+++++
T Consensus 56 ~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 135 (615)
T 1pgu_A 56 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 135 (615)
T ss_dssp EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEec
Confidence 2345689999 99999999 9999999999999999999754 3333445555678999999999999999998
Q ss_pred cCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecccccc---CeEEEEEC
Q psy13076 195 EGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSR---FVQAVRYS 271 (423)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~---~i~~l~~s 271 (423)
.+.+..+.++.++.+..+..+..|...|.+++|+|+++..+++++.|+.+++|+....+....+..|.. .|.+++|+
T Consensus 136 ~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 215 (615)
T 1pgu_A 136 EGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS 215 (615)
T ss_dssp CCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC
T ss_pred cCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEEC
Confidence 776656678888888888889999999999999999987799999999999999988888888888888 99999999
Q ss_pred CC-CCEEEEEEecCeEEEEECCCccceeccccc--ccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCc
Q psy13076 272 PS-GSHFASAGFDGKVFLYDGASADLVSELGNP--AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGN 348 (423)
Q Consensus 272 ~~-g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~ 348 (423)
|+ +++|++++.||.|++||..+++.+..+... .|...|.+++|+ ++++|++++.|++|++||+.+++.+..+....
T Consensus 216 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 294 (615)
T 1pgu_A 216 PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK 294 (615)
T ss_dssp STTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC
Confidence 99 999999999999999999999887766321 588999999999 99999999999999999999998887775441
Q ss_pred ---eeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076 349 ---QVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA 421 (423)
Q Consensus 349 ---~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~ 421 (423)
......+.. +++..+++++.++.+++||+.+. .++..+.+|..+|++++| |+ |++++.||.|++|++
T Consensus 295 ~~~~~~~~~~~~-~~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~ 364 (615)
T 1pgu_A 295 QQLGNQQVGVVA-TGNGRIISLSLDGTLNFYELGHD-EVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSS 364 (615)
T ss_dssp TCGGGCEEEEEE-EETTEEEEEETTSCEEEEETTEE-EEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTT
T ss_pred CcccCceeEEEe-CCCCeEEEEECCCCEEEEECCCC-cEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEc
Confidence 111122222 38999999999999999999873 456778899999999999 87 778888888888875
No 37
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.5e-40 Score=298.63 Aligned_cols=280 Identities=18% Similarity=0.235 Sum_probs=232.1
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT 88 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~ 88 (423)
.++++|||.+||+++.||.|++||+.+ ..++..+++|..+|.+++|+|++++|++|+.|++|++||+++++.+.
T Consensus 18 ~~~fsp~~~~l~s~~~dg~v~lWd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~----- 91 (304)
T 2ynn_A 18 GIDFHPTEPWVLTTLYSGRVELWNYET-QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV----- 91 (304)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE-----
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCC-CceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEE-----
Confidence 566778999999999999999999976 45677899999999999999999999999999999999998754332
Q ss_pred CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEE
Q psy13076 89 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 168 (423)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~ 168 (423)
.+.+|...|++++|+|+++++++|+.|++|++||+++.... .
T Consensus 92 -------------------------------------~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-~ 133 (304)
T 2ynn_A 92 -------------------------------------DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL-E 133 (304)
T ss_dssp -------------------------------------EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEE-E
T ss_pred -------------------------------------EEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcch-h
Confidence 34579999999999999999999999999999999876433 2
Q ss_pred eeecCCCCCeeEEEECC-CCCeEEEEEcCCceeeEEEeecCCcceeccc-CCCcceeEEEEecCC-CeeEEEEeCCCeEE
Q psy13076 169 NEFHPIGGPIKDIAWSP-DNQRMVVVGEGRERFGHVFMSETGTSVGEIS-GQSKPINSCDFKPSR-PFRIITGSEDNTIA 245 (423)
Q Consensus 169 ~~~~~~~~~v~~v~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~-~~~~~s~s~d~~i~ 245 (423)
..+..+...|.+++|+| ++..+++++.+ ....+|+...+.....+. .+...+..+.++|.. ...+++++.|++|+
T Consensus 134 ~~~~~h~~~v~~v~~~p~~~~~l~sgs~D--~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~ 211 (304)
T 2ynn_A 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLD--RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211 (304)
T ss_dssp EEECCCCSCEEEEEECTTCTTEEEEEETT--SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEE
T ss_pred hhhcccCCcEEEEEECCCCCCEEEEEeCC--CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEE
Confidence 34556778899999999 46667766544 345778776655544443 456788999998742 23589999999999
Q ss_pred EEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCC--eEEE
Q psy13076 246 VFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGT--QLLT 323 (423)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~--~l~s 323 (423)
+||....+....+..|...|.+++|+|++++|++|+.||.|++||.++++....+. .|...+++++|+|++. ++++
T Consensus 212 iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~as 289 (304)
T 2ynn_A 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN--VGLERSWCIATHPTGRKNYIAS 289 (304)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC--CSSSSEEEEEECTTCGGGCEEE
T ss_pred EEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeecc--CCCccEEEEEECCCCCceEEEE
Confidence 99998888888889999999999999999999999999999999999999888774 5778899999999875 5777
Q ss_pred EeCCCcEEEEecCC
Q psy13076 324 ASGDKTCKLWDIET 337 (423)
Q Consensus 324 ~s~d~~i~iwd~~~ 337 (423)
|+.|+ +.+|++..
T Consensus 290 g~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 290 GFDNG-FTVLSLGN 302 (304)
T ss_dssp EETTE-EEEEECC-
T ss_pred ecCCc-eEEEEecc
Confidence 76555 77787754
No 38
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-42 Score=331.38 Aligned_cols=326 Identities=12% Similarity=0.033 Sum_probs=216.5
Q ss_pred EeCCEEEEEeccceEEEEeccCCCCc---eeecccccCceeEEEEeCC------CCeEEEecCCCceEEeecCCcceeec
Q psy13076 14 WQGDYLLTVSLSGFISYLDVNNPSTP---IRVIKGHNKPITALALSPD------RGTVFTGSHDGFITRWNAKTEYIFAT 84 (423)
Q Consensus 14 ~~~~~~~~~~~dg~i~~~d~~~~~~~---~~~~~gh~~~V~~l~~~~~------~~~l~sg~~D~~i~vW~~~~~~~~~~ 84 (423)
+++.++++++.||.|+|||+.++... ..++.+|.+.|.+++|+|+ +.+||||+.||+|++||+.++.....
T Consensus 171 ~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~ 250 (524)
T 2j04_B 171 EHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH 250 (524)
T ss_dssp -----------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS
T ss_pred hhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc
Confidence 45667888999999999999764322 2356788999999999996 57999999999999999976431100
Q ss_pred ccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCc
Q psy13076 85 LPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 164 (423)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~ 164 (423)
. . ..+ ......+.+|...|++++|+|++ +|++|+.||+|++||+++..
T Consensus 251 ~-------------------~----------~~~--~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~ 298 (524)
T 2j04_B 251 V-------------------F----------KMC--EKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPE 298 (524)
T ss_dssp E-------------------E----------ECC--CSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCS
T ss_pred c-------------------c----------eee--cCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCC
Confidence 0 0 000 01123467899999999999864 89999999999999987542
Q ss_pred eeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEE--EEecCCCeeEEEEeCCC
Q psy13076 165 HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSC--DFKPSRPFRIITGSEDN 242 (423)
Q Consensus 165 ~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~s~s~d~ 242 (423)
.. ...+ ..|...|.++ .|+|++...+++++.|+
T Consensus 299 ~~-~~~~--------------------------------------------~~H~~~V~sv~~~~s~~g~~~laS~S~D~ 333 (524)
T 2j04_B 299 VP-SFYD--------------------------------------------QVHDSYILSVSTAYSDFEDTVVSTVAVDG 333 (524)
T ss_dssp SC-SEEE--------------------------------------------ECSSSCEEEEEEECCTTSCCEEEEEETTS
T ss_pred Cc-eEEe--------------------------------------------ecccccEEEEEEEcCCCCCeEEEEeccCC
Confidence 11 0111 1233445555 33444423588999999
Q ss_pred eEEEEcCCCceeeeecccccc--CeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCe
Q psy13076 243 TIAVFEGPPFKFKMTKQEHSR--FVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQ 320 (423)
Q Consensus 243 ~i~~~~~~~~~~~~~~~~~~~--~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 320 (423)
++++||.+..+....+..|.. .+.+++|+|+++.+++++.|+.|++||.+++.....+. +|.+.|.+++|+|+|++
T Consensus 334 tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~--gH~~~V~sva~Sp~g~~ 411 (524)
T 2j04_B 334 YFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV--SRETTITAIGVSRLHPM 411 (524)
T ss_dssp EEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE--ECSSCEEEEECCSSCCB
T ss_pred eEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee--cCCCceEEEEeCCCCCe
Confidence 999999876554434444432 47889999999999999999999999999988766664 59999999999999999
Q ss_pred EEEEeCCCcEEEEecCCcceeeeeeeC----ceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCcee
Q psy13076 321 LLTASGDKTCKLWDIETKSAVSEFLMG----NQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPIT 396 (423)
Q Consensus 321 l~s~s~d~~i~iwd~~~~~~i~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~ 396 (423)
|++|+.|++|++||+..+ .+...... .......+.+.++|+.+. ... ...+|+.......+..+.+|..+|+
T Consensus 412 l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~ 487 (524)
T 2j04_B 412 VLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINIT 487 (524)
T ss_dssp CEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------CCCSCC
T ss_pred EEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCCCceEE
Confidence 999999999999998654 22211100 001122344455666332 211 1222322212344567899999999
Q ss_pred EEEecCCCC---eEEEecCCCcEEEeeCC
Q psy13076 397 ALALSPDRG---TVFTGSHDGFITRWNAK 422 (423)
Q Consensus 397 ~i~~sp~~~---~l~s~s~D~~i~~W~~~ 422 (423)
+++|+|+++ +|++|+.||+|++|++.
T Consensus 488 ~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 488 CTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp CEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred EEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 999999965 89999999999999975
No 39
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=9.5e-41 Score=312.01 Aligned_cols=292 Identities=20% Similarity=0.266 Sum_probs=236.9
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT 88 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~ 88 (423)
++++++||++|++|+.||.|++||+.+ .+....+++|...|.+++|+|++++|++|+.|++|++||+.+.....
T Consensus 71 ~~~~sp~~~~l~s~s~D~~v~iWd~~~-~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~----- 144 (380)
T 3iz6_a 71 SLDWTPEKNWIVSASQDGRLIVWNALT-SQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRD----- 144 (380)
T ss_dssp EEEECTTSSCEEEEETTSEEEEEETTT-TEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCC-----
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCC-CccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcccc-----
Confidence 445556999999999999999999976 45677899999999999999999999999999999999987532100
Q ss_pred CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCC-CCEEEEEccCCcEEEEEcCCCceeE
Q psy13076 89 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEHIL 167 (423)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~~~d~~i~vwd~~~~~~~~ 167 (423)
........+.+|...|.++.|+|+ +..+++|+.|++|++||+.+++...
T Consensus 145 ------------------------------~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~ 194 (380)
T 3iz6_a 145 ------------------------------GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRIS 194 (380)
T ss_dssp ------------------------------CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEE
T ss_pred ------------------------------CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEE
Confidence 011234567899999999999996 5679999999999999998877654
Q ss_pred Eeee---cCCCCCeeEEEECC-CCCeEEEEEcCCceeeEEEeec-CCcceecccCCCcceeEEEEecCCCeeEEEEeCCC
Q psy13076 168 KNEF---HPIGGPIKDIAWSP-DNQRMVVVGEGRERFGHVFMSE-TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN 242 (423)
Q Consensus 168 ~~~~---~~~~~~v~~v~~s~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~ 242 (423)
.... ..+...|.+++|+| ++..+++++.+. ..++|+.. .+..+..+.+|...|.+++|+|++.+ +++++.|+
T Consensus 195 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~--~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~D~ 271 (380)
T 3iz6_a 195 IFGSEFPSGHTADVLSLSINSLNANMFISGSCDT--TVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR-FGTGSDDG 271 (380)
T ss_dssp EECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS--CEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSE-EEEECSSS
T ss_pred EeecccCCCCccCeEEEEeecCCCCEEEEEECCC--eEEEEECCCCCcceEEECCcCCCeEEEEEecCCCe-EEEEcCCC
Confidence 3211 34567899999987 667776665443 45678765 45667778899999999999999875 89999999
Q ss_pred eEEEEcCCCceeeeecccc-------ccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccc--cccCCCeEEEE
Q psy13076 243 TIAVFEGPPFKFKMTKQEH-------SRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGN--PAHKGGVYAVA 313 (423)
Q Consensus 243 ~i~~~~~~~~~~~~~~~~~-------~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~~~i~~l~ 313 (423)
+|++||.........+..+ ...+++++|+|+|++|++|+.||.|++||..+++....+.. .+|.+.|.+++
T Consensus 272 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~ 351 (380)
T 3iz6_a 272 TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLG 351 (380)
T ss_dssp CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEE
T ss_pred eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEE
Confidence 9999998776554433322 23588999999999999999999999999988877655421 46899999999
Q ss_pred ECCCCCeEEEEeCCCcEEEEecCCcc
Q psy13076 314 WKPDGTQLLTASGDKTCKLWDIETKS 339 (423)
Q Consensus 314 ~~~~~~~l~s~s~d~~i~iwd~~~~~ 339 (423)
|+|+|++|++|+.|++|++|++...+
T Consensus 352 ~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 352 LSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp ECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred ECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 99999999999999999999998654
No 40
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-39 Score=301.75 Aligned_cols=301 Identities=17% Similarity=0.262 Sum_probs=235.9
Q ss_pred eeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecC
Q psy13076 40 IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIE 119 (423)
Q Consensus 40 ~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 119 (423)
...|++|.++|++++|+|++++|++|+.|+.|++||+.+++...
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~------------------------------------ 68 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG------------------------------------ 68 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE------------------------------------
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh------------------------------------
Confidence 34689999999999999999999999999999999987754332
Q ss_pred CCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC--
Q psy13076 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR-- 197 (423)
Q Consensus 120 ~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~-- 197 (423)
.+.+|...|.+++|+|++++|++++.|++|++||+.+.+...... ...++.+++|+|+++.+++++...
T Consensus 69 ------~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~ 139 (369)
T 3zwl_B 69 ------TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK---SPVPVKRVEFSPCGNYFLAILDNVMK 139 (369)
T ss_dssp ------EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE---CSSCEEEEEECTTSSEEEEEECCBTT
T ss_pred ------hhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee---cCCCeEEEEEccCCCEEEEecCCccC
Confidence 345688999999999999999999999999999998877654433 457899999999998887765430
Q ss_pred -ceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecccccc--CeEEEEECCCC
Q psy13076 198 -ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSR--FVQAVRYSPSG 274 (423)
Q Consensus 198 -~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~--~i~~l~~s~~g 274 (423)
.....+|+......... + ...... .......+.. .+.+++|+|++
T Consensus 140 ~~g~i~~~d~~~~~~~~~--------------------~---------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 187 (369)
T 3zwl_B 140 NPGSINIYEIERDSATHE--------------------L---------TKVSEE---PIHKIITHEGLDAATVAGWSTKG 187 (369)
T ss_dssp BCCEEEEEEEEECTTTCC--------------------E---------EEECSS---CSEEEECCTTCCCEEEEEECGGG
T ss_pred CCCEEEEEEecCCcccee--------------------e---------cccccc---eeeeccCCcCccceeEEEEcCCC
Confidence 01122333221111000 0 000000 0111222333 79999999999
Q ss_pred CEEEEEEecCeEEEEECCC-ccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEee
Q psy13076 275 SHFASAGFDGKVFLYDGAS-ADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQ 353 (423)
Q Consensus 275 ~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~ 353 (423)
+++++++.||.|++||..+ .+....+. .|...|.+++|+|++++|++++.|+.|++||+++++.+..+.... ...
T Consensus 188 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--~~~ 263 (369)
T 3zwl_B 188 KYIIAGHKDGKISKYDVSNNYEYVDSID--LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDC--PLN 263 (369)
T ss_dssp CEEEEEETTSEEEEEETTTTTEEEEEEE--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS--CEE
T ss_pred CEEEEEcCCCEEEEEECCCCcEeEEEEe--cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCC--Cce
Confidence 9999999999999999988 55555553 588899999999999999999999999999999998888776433 334
Q ss_pred EEEEEecCcEEEEEeCCC--------------cEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEe
Q psy13076 354 QVSCLWQGDYLLTVSLSG--------------FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRW 419 (423)
Q Consensus 354 ~~~~~~~g~~l~~~~~~~--------------~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W 419 (423)
.+.+.+++.++++++.++ .+++||..+. .++..+.+|...|++++|+|++++|++++.||.|++|
T Consensus 264 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw 342 (369)
T 3zwl_B 264 TAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE-EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLH 342 (369)
T ss_dssp EEEECSSSSEEEEEECCC-------------CEEEEEETTTC-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC-cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEE
Confidence 566678999999999888 7999998875 4567889999999999999999999999999999999
Q ss_pred eCC
Q psy13076 420 NAK 422 (423)
Q Consensus 420 ~~~ 422 (423)
+++
T Consensus 343 ~~~ 345 (369)
T 3zwl_B 343 HFE 345 (369)
T ss_dssp EEC
T ss_pred ECc
Confidence 975
No 41
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1e-39 Score=297.59 Aligned_cols=279 Identities=17% Similarity=0.298 Sum_probs=226.6
Q ss_pred eEEEEe-CCEEEEEeccceEEEEeccCCC----CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeec
Q psy13076 10 VSCLWQ-GDYLLTVSLSGFISYLDVNNPS----TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFAT 84 (423)
Q Consensus 10 ~~~~~~-~~~~~~~~~dg~i~~~d~~~~~----~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~ 84 (423)
+++.++ +++|++|+.||.|++||+.... .++..+++|..+|.+++|+|++++|+||+.|++|++||+++++.+.
T Consensus 23 l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~- 101 (319)
T 3frx_A 23 LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ- 101 (319)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-
T ss_pred EEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeE-
Confidence 444454 5899999999999999986422 2466899999999999999999999999999999999998764432
Q ss_pred ccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCc
Q psy13076 85 LPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 164 (423)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~ 164 (423)
.+.+|...|.+++|+|++.++++++.|++|++||++..
T Consensus 102 -----------------------------------------~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~- 139 (319)
T 3frx_A 102 -----------------------------------------RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ- 139 (319)
T ss_dssp -----------------------------------------EEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-
T ss_pred -----------------------------------------EEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-
Confidence 34579999999999999999999999999999998643
Q ss_pred eeEEeeecCCCCCeeEEEECCCCC------eEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEE
Q psy13076 165 HILKNEFHPIGGPIKDIAWSPDNQ------RMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITG 238 (423)
Q Consensus 165 ~~~~~~~~~~~~~v~~v~~s~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~ 238 (423)
.. ..+..+...|.+++|+|..+ .+++++.+ ....+|+.........+.+|...|.+++|+|++.+ ++++
T Consensus 140 ~~--~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~-l~s~ 214 (319)
T 3frx_A 140 CL--ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND--KMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL-IASA 214 (319)
T ss_dssp EE--EEECCCSSCEEEEEECCC------CCEEEEEETT--SCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSE-EEEE
T ss_pred eE--EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCC--CEEEEEECCcchhheeecCCCCcEEEEEEcCCCCE-EEEE
Confidence 22 23445678899999999643 55655543 34678888877777788899999999999999885 8999
Q ss_pred eCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccc------cccCCCeEEE
Q psy13076 239 SEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGN------PAHKGGVYAV 312 (423)
Q Consensus 239 s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~------~~~~~~i~~l 312 (423)
+.|+.|++||....+....+.. ...+.+++|+|++.++++++. +.+++|+.........+.. ..|...+.++
T Consensus 215 ~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 292 (319)
T 3frx_A 215 GKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL 292 (319)
T ss_dssp ETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEE
T ss_pred eCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEE
Confidence 9999999999887776665554 457999999999999988765 4599999887665444321 2456778999
Q ss_pred EECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076 313 AWKPDGTQLLTASGDKTCKLWDIETK 338 (423)
Q Consensus 313 ~~~~~~~~l~s~s~d~~i~iwd~~~~ 338 (423)
+|+|+|++|++|+.|++|++||+.+.
T Consensus 293 ~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 293 AWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EECCCCCEEEEeecCceEEEEEEeec
Confidence 99999999999999999999998653
No 42
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.5e-40 Score=316.43 Aligned_cols=297 Identities=17% Similarity=0.181 Sum_probs=221.0
Q ss_pred eeecccccCceeEEEEeC-CCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEec
Q psy13076 40 IRVIKGHNKPITALALSP-DRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNI 118 (423)
Q Consensus 40 ~~~~~gh~~~V~~l~~~~-~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 118 (423)
.....+|.+.|++|+|+| ++.+||+|+.||+|++||+.++....
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~----------------------------------- 156 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT----------------------------------- 156 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCE-----------------------------------
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCcee-----------------------------------
Confidence 345568999999999999 46689999999999999987642111
Q ss_pred CCCcccccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC
Q psy13076 119 ENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR 197 (423)
Q Consensus 119 ~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~ 197 (423)
...+.+|...|++++|+| ++.+|+|++.|++|++||++..........+...
T Consensus 157 -----~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~---------------------- 209 (435)
T 4e54_B 157 -----FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTIN---------------------- 209 (435)
T ss_dssp -----EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCS----------------------
T ss_pred -----EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCC----------------------
Confidence 112457999999999998 7899999999999999998654322111111111
Q ss_pred ceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCC-E
Q psy13076 198 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGS-H 276 (423)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~ 276 (423)
..+.+++|+|++.+ +++|+.|+.|++|+... +....+..|...|++++|+|++. +
T Consensus 210 ----------------------~~~~~~~~~~~~~~-l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~ 265 (435)
T 4e54_B 210 ----------------------IWFCSLDVSASSRM-VVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWF 265 (435)
T ss_dssp ----------------------CCCCCEEEETTTTE-EEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSE
T ss_pred ----------------------ccEEEEEECCCCCE-EEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceE
Confidence 12344556665554 77889999999999754 33456678999999999999987 7
Q ss_pred EEEEEecCeEEEEECCCccceecc-cccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCcee-----
Q psy13076 277 FASAGFDGKVFLYDGASADLVSEL-GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQV----- 350 (423)
Q Consensus 277 l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~----- 350 (423)
+++|+.|+.|++||+++.+....+ ...+|...|.+++|+|+|++|++++.|++|++||+.++++...+......
T Consensus 266 ~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 345 (435)
T 4e54_B 266 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHL 345 (435)
T ss_dssp EEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSS
T ss_pred EEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccc
Confidence 889999999999999877654333 22468899999999999999999999999999999998776655322111
Q ss_pred EeeEEEEEecCcEEEEEe------------CCCcEEEEecCCCCCceEEeccCCCceeEE-EecCCCCeEEEecCCCcEE
Q psy13076 351 EDQQVSCLWQGDYLLTVS------------LSGFISYLDVNNPSTPIRVIKGHNKPITAL-ALSPDRGTVFTGSHDGFIT 417 (423)
Q Consensus 351 ~~~~~~~~~~g~~l~~~~------------~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i-~~sp~~~~l~s~s~D~~i~ 417 (423)
........+++..++++. .++.|++||..++........+|...|.++ +|+|++++|++|+ |+.|+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~ 424 (435)
T 4e54_B 346 TPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHIL 424 (435)
T ss_dssp CCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEE
T ss_pred eeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEE
Confidence 111122233555555543 235799999988655433346899999998 6999999999876 78999
Q ss_pred EeeCCC
Q psy13076 418 RWNAKT 423 (423)
Q Consensus 418 ~W~~~~ 423 (423)
+|++++
T Consensus 425 iW~~~~ 430 (435)
T 4e54_B 425 IWSQQE 430 (435)
T ss_dssp ECCCC-
T ss_pred EEECCc
Confidence 999864
No 43
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.7e-39 Score=331.53 Aligned_cols=370 Identities=15% Similarity=0.175 Sum_probs=298.0
Q ss_pred CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEec-CCeEEEE
Q psy13076 38 TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIR 116 (423)
Q Consensus 38 ~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~ 116 (423)
+..+.+++|.++|++++|+|++++|++|+.||+|++||++++.....+.. +.+....+.++|+++.++..+ +..+.+|
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEec-CCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 45678999999999999999999999999999999999999887777653 345566788999998877754 6789999
Q ss_pred ecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECC-CCCeEEEEEc
Q psy13076 117 NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP-DNQRMVVVGE 195 (423)
Q Consensus 117 ~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~~~~~~~ 195 (423)
++++++....+.+|...|++++|+|+++++++++.|++|++||+.+.... ...+..+..+|.+++|+| ++..+++++.
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL-EQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEE-EEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred ECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceE-EEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999875332 233445668899999999 7777777664
Q ss_pred CCceeeEEEeecCCcceecccCCC-cceeEEEEec--CCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECC
Q psy13076 196 GRERFGHVFMSETGTSVGEISGQS-KPINSCDFKP--SRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSP 272 (423)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~--~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 272 (423)
+. ...+|+...+.....+..+. ..+.+++|+| ++++ +++++.|+.|++|+............|...|.+++|+|
T Consensus 162 dg--~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 238 (814)
T 3mkq_A 162 DR--TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY-MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238 (814)
T ss_dssp TS--EEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCE-EEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred CC--eEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCE-EEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence 43 35677776666655555444 7899999999 6664 88999999999999888777777888999999999999
Q ss_pred CCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCe-EEEEeCCCcEEEEecCCcceeeeeee-----
Q psy13076 273 SGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQ-LLTASGDKTCKLWDIETKSAVSEFLM----- 346 (423)
Q Consensus 273 ~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~-l~s~s~d~~i~iwd~~~~~~i~~~~~----- 346 (423)
+|+++++++.||.|++||..+++....+. .|...+.+++|+|+++. +++++.|+.+.+|++........+..
T Consensus 239 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 316 (814)
T 3mkq_A 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLN--VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLV 316 (814)
T ss_dssp SSSEEEEEETTSCEEEEETTTCSEEEEEC--CSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEee--cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEE
Confidence 99999999999999999999988877764 47789999999999873 24555577789998765432111100
Q ss_pred -------------------------------------CceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEec
Q psy13076 347 -------------------------------------GNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIK 389 (423)
Q Consensus 347 -------------------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 389 (423)
........+.+.++|.++++++ ++.+.+|++.... .
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~------~ 389 (814)
T 3mkq_A 317 WSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWR------N 389 (814)
T ss_dssp EECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTE------E
T ss_pred EECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccc------c
Confidence 0001123566677999999888 8999999975421 2
Q ss_pred cCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076 390 GHNKPITALALSPDRGTVFTGSHDGFITRWNA 421 (423)
Q Consensus 390 ~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~ 421 (423)
.|.+.|++++|+|++++|++++.|+.|++|+.
T Consensus 390 ~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~ 421 (814)
T 3mkq_A 390 KAFGKCQDFVWGPDSNSYALIDETGQIKYYKN 421 (814)
T ss_dssp EEEEECSEEEECTTSSCEEEECTTCCEEEEET
T ss_pred cCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC
Confidence 34567999999999999999999999999963
No 44
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.2e-39 Score=310.98 Aligned_cols=332 Identities=17% Similarity=0.253 Sum_probs=258.3
Q ss_pred eEEE-EeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076 10 VSCL-WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT 88 (423)
Q Consensus 10 ~~~~-~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~ 88 (423)
+.|. ++++++++|+.||.|++||+.+ .+++..+.+|.++|.+++|+|++ +|++|+.||+|++||+++++...
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~-~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~----- 197 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSIN-KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTH----- 197 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEE-----
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCC-CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEE-----
Confidence 4444 6999999999999999999976 56788899999999999999987 99999999999999998764432
Q ss_pred CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEEC--CCCCEEEEEccCCcEEEEEcCCCcee
Q psy13076 89 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYS--PSGFYIASGDISGKVRIWDTVNKEHI 166 (423)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~s--p~~~~l~s~~~d~~i~vwd~~~~~~~ 166 (423)
.+.+|...|.+++|+ |++.++++++.|++|++||+.+....
T Consensus 198 -------------------------------------~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~ 240 (464)
T 3v7d_B 198 -------------------------------------VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV 240 (464)
T ss_dssp -------------------------------------EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC
T ss_pred -------------------------------------EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccc
Confidence 345688899999998 57899999999999999999876543
Q ss_pred EEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEE
Q psy13076 167 LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAV 246 (423)
Q Consensus 167 ~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~ 246 (423)
...... .....+.+.|++.. .....+.+|...+.++ ++++. .+++++.|+.|++
T Consensus 241 ~~~~~~---~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~v~~~--~~~~~-~l~~~~~d~~i~v 294 (464)
T 3v7d_B 241 PDHGEE---HDYPLVFHTPEENP--------------------YFVGVLRGHMASVRTV--SGHGN-IVVSGSYDNTLIV 294 (464)
T ss_dssp ---------CCSSEEESCGGGCT--------------------TEEEEECCCSSCEEEE--EEETT-EEEEEETTSCEEE
T ss_pred cccccc---CCcceEeeccCCCe--------------------EEEEEccCccceEEEE--cCCCC-EEEEEeCCCeEEE
Confidence 221111 11112222222111 1123345566667666 44555 4899999999999
Q ss_pred EcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeC
Q psy13076 247 FEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASG 326 (423)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~ 326 (423)
||....+.......|...|.+++|+|+++++++|+.||.|++||..+++.+..+. +|...|.+++|+ +++|++++.
T Consensus 295 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~--~~~l~s~s~ 370 (464)
T 3v7d_B 295 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ--GHTALVGLLRLS--DKFLVSAAA 370 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEC--SSEEEEEET
T ss_pred EECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe--CCCCcEEEEEEc--CCEEEEEeC
Confidence 9998888888888899999999999999999999999999999999998887774 688999999997 579999999
Q ss_pred CCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCe
Q psy13076 327 DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGT 406 (423)
Q Consensus 327 d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~ 406 (423)
|++|++||+.+........... ......+.+++..+++++ ++.+++||+.+++.....+.+|..+|++++|+ +..+
T Consensus 371 dg~v~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l 446 (464)
T 3v7d_B 371 DGSIRGWDANDYSRKFSYHHTN--LSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTL 446 (464)
T ss_dssp TSEEEEEETTTCCEEEEEECTT--CCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEE
T ss_pred CCcEEEEECCCCceeeeecCCC--CccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEE
Confidence 9999999999887655543332 233445667999999988 89999999998654332367899999999998 4455
Q ss_pred EEEecCCCcEEEe
Q psy13076 407 VFTGSHDGFITRW 419 (423)
Q Consensus 407 l~s~s~D~~i~~W 419 (423)
+++++.|+.+.+|
T Consensus 447 ~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 447 VAAVEKDGQSFLE 459 (464)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEEEeCCeEEEE
Confidence 5666777766554
No 45
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.2e-40 Score=330.82 Aligned_cols=293 Identities=25% Similarity=0.377 Sum_probs=225.5
Q ss_pred CCEEEEEeccceEEEEeccCCCC----ceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCC
Q psy13076 16 GDYLLTVSLSGFISYLDVNNPST----PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRG 91 (423)
Q Consensus 16 ~~~~~~~~~dg~i~~~d~~~~~~----~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~ 91 (423)
+++|++|+.||.|++||+..... ....+.+|.+.|.+++|+|++++|+||+.|++|++||+.++....
T Consensus 395 ~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~-------- 466 (694)
T 3dm0_A 395 ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR-------- 466 (694)
T ss_dssp CSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--------
T ss_pred CCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCccee--------
Confidence 58999999999999999875332 345789999999999999999999999999999999998754322
Q ss_pred CceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeee
Q psy13076 92 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 171 (423)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 171 (423)
.+.+|...|.+++|+|++++|+|++.|++|++||........ ...
T Consensus 467 ----------------------------------~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~-~~~ 511 (694)
T 3dm0_A 467 ----------------------------------RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYT-ISE 511 (694)
T ss_dssp ----------------------------------EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE-ECS
T ss_pred ----------------------------------EEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCccee-ecc
Confidence 345799999999999999999999999999999975322110 000
Q ss_pred cCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCC-CeeEEEEeCCCeEEEEcCC
Q psy13076 172 HPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSR-PFRIITGSEDNTIAVFEGP 250 (423)
Q Consensus 172 ~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~s~s~d~~i~~~~~~ 250 (423)
...+|...|.+++|+|++ ...+++++.|++|++||..
T Consensus 512 ------------------------------------------~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~ 549 (694)
T 3dm0_A 512 ------------------------------------------GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549 (694)
T ss_dssp ------------------------------------------STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT
T ss_pred ------------------------------------------CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECC
Confidence 011344455566666654 2358899999999999998
Q ss_pred CceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcE
Q psy13076 251 PFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTC 330 (423)
Q Consensus 251 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i 330 (423)
..+....+..|...|++++|+|+|++|++|+.||.|++||+.+++.+..+. +...+.+++|+|++.+|++++ |+.|
T Consensus 550 ~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~-~~~i 625 (694)
T 3dm0_A 550 NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE---ANSVIHALCFSPNRYWLCAAT-EHGI 625 (694)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB---CSSCEEEEEECSSSSEEEEEE-TTEE
T ss_pred CCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec---CCCcEEEEEEcCCCcEEEEEc-CCCE
Confidence 888888888999999999999999999999999999999999998776663 456799999999998887765 5669
Q ss_pred EEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEe
Q psy13076 331 KLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410 (423)
Q Consensus 331 ~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~ 410 (423)
++||+++++.+..+.......... . .. .. ......|.-.+++++|+||+++|+||
T Consensus 626 ~iwd~~~~~~~~~~~~~~~~~~~~--~---------------------~~-~~-~~~~~~~~~~~~~l~~spdg~~l~sg 680 (694)
T 3dm0_A 626 KIWDLESKSIVEDLKVDLKAEAEK--A---------------------DN-SG-PAATKRKVIYCTSLNWSADGSTLFSG 680 (694)
T ss_dssp EEEETTTTEEEEEECCCCC-----------------------------------------CCCCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCChhhhcccccccccc--c---------------------cc-cc-cccCCceeEEeeeEEEcCCCCEEEEE
Confidence 999999988776653221110000 0 00 00 01112344468999999999999999
Q ss_pred cCCCcEEEeeCC
Q psy13076 411 SHDGFITRWNAK 422 (423)
Q Consensus 411 s~D~~i~~W~~~ 422 (423)
|.||+|++|++.
T Consensus 681 s~Dg~i~iW~i~ 692 (694)
T 3dm0_A 681 YTDGVIRVWGIG 692 (694)
T ss_dssp ETTSEEEEEEC-
T ss_pred cCCCeEEEEecc
Confidence 999999999985
No 46
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-39 Score=297.18 Aligned_cols=291 Identities=22% Similarity=0.336 Sum_probs=217.1
Q ss_pred eeeEEEEeCCEEEEEeccceEEEEeccCCC-Cceeec-cc-ccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeec
Q psy13076 8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPS-TPIRVI-KG-HNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFAT 84 (423)
Q Consensus 8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~-~~~~~~-~g-h~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~ 84 (423)
.+.++.+.+++||+|+.||.|++||+..+. +....+ .+ |.++|.+++|+|++++|++|+.|++|++||.+.....
T Consensus 16 ~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~-- 93 (330)
T 2hes_X 16 KIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR-- 93 (330)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC--------
T ss_pred ceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc--
Confidence 344556666699999999999999997543 344455 45 9999999999999999999999999999998642100
Q ss_pred ccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCC-
Q psy13076 85 LPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK- 163 (423)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~- 163 (423)
.........+.+|...|.+++|+|++++|++++.|++|++||+...
T Consensus 94 ---------------------------------~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~ 140 (330)
T 2hes_X 94 ---------------------------------TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG 140 (330)
T ss_dssp ----------------------------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTC
T ss_pred ---------------------------------cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC
Confidence 0011223456789999999999999999999999999999998532
Q ss_pred c-eeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCC--cceecccCCCcceeEEEEecCC-CeeEEEEe
Q psy13076 164 E-HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG--TSVGEISGQSKPINSCDFKPSR-PFRIITGS 239 (423)
Q Consensus 164 ~-~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~-~~~~~s~s 239 (423)
. ......+..+...|.+++|+|++..+++++.+. ..++|+...+ ..+..+.+|...|.+++|+|+. ...+++++
T Consensus 141 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~--~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 218 (330)
T 2hes_X 141 EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD--TVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS 218 (330)
T ss_dssp CCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTS--CEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE
T ss_pred CCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCC--eEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe
Confidence 1 122234556778899999999999988877554 3567776554 4667788999999999999984 24589999
Q ss_pred CCCeEEEEcCCCc--------eeeeeccc-cccCeEEEEECCCCCEEEEEEecCeEEEEECCCcc--ceecccccccCC-
Q psy13076 240 EDNTIAVFEGPPF--------KFKMTKQE-HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD--LVSELGNPAHKG- 307 (423)
Q Consensus 240 ~d~~i~~~~~~~~--------~~~~~~~~-~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~~- 307 (423)
.|++|++|+.... .....+.. |...|.+++|++++ +|++++.||.|++|+..+++ ...... ..|..
T Consensus 219 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~~h~~~ 296 (330)
T 2hes_X 219 DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA-LCHGVY 296 (330)
T ss_dssp TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES-CTTTTS
T ss_pred CCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc-cccccc
Confidence 9999999986432 22233333 88899999999765 89999999999999987763 222221 35766
Q ss_pred CeEEEEECC--CCCeEEEEeCCCcEEEEecCC
Q psy13076 308 GVYAVAWKP--DGTQLLTASGDKTCKLWDIET 337 (423)
Q Consensus 308 ~i~~l~~~~--~~~~l~s~s~d~~i~iwd~~~ 337 (423)
.|.+++|+| ++++|++++.|++|++||++.
T Consensus 297 ~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 297 EINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred eEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 899999999 789999999999999999864
No 47
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.3e-39 Score=299.56 Aligned_cols=282 Identities=18% Similarity=0.209 Sum_probs=234.7
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT 88 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~ 88 (423)
++++++||++|++|+.||.|++||..+ .+....+..|...|.+++|+|++.+|++|+.|+++++|++.......
T Consensus 69 ~~~~s~d~~~l~s~s~Dg~v~vWd~~~-~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~----- 142 (354)
T 2pbi_B 69 CMDWCKDKRRIVSSSQDGKVIVWDSFT-TNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNEN----- 142 (354)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCC-----
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCC-CCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccc-----
Confidence 445556999999999999999999875 45566888999999999999999999999999999999986431100
Q ss_pred CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEE
Q psy13076 89 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 168 (423)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~ 168 (423)
.......+.+|...|.++.|+|++.++++++.|++|++||+++++...
T Consensus 143 -------------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~- 190 (354)
T 2pbi_B 143 -------------------------------MAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQ- 190 (354)
T ss_dssp -------------------------------SGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-
T ss_pred -------------------------------ccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEE-
Confidence 011223455799999999999999999999999999999998877654
Q ss_pred eeecCCCCCeeEEEECCC--CCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEE
Q psy13076 169 NEFHPIGGPIKDIAWSPD--NQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAV 246 (423)
Q Consensus 169 ~~~~~~~~~v~~v~~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~ 246 (423)
.+..+...|.+++|+|+ +..+++++.+ ....+|+..++..+..+..|...|.+++|+|++.. +++++.|+++++
T Consensus 191 -~~~~h~~~v~~~~~~~~~~g~~l~sgs~D--g~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~D~~v~l 266 (354)
T 2pbi_B 191 -SFHGHGADVLCLDLAPSETGNTFVSGGCD--KKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDA-FASGSDDATCRL 266 (354)
T ss_dssp -EEECCSSCEEEEEECCCSSCCEEEEEETT--SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEE
T ss_pred -EEcCCCCCeEEEEEEeCCCCCEEEEEeCC--CeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCE-EEEEeCCCeEEE
Confidence 34456788999999884 5677776644 34678888888888888999999999999999875 899999999999
Q ss_pred EcCCCceeeeecc--ccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEE
Q psy13076 247 FEGPPFKFKMTKQ--EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTA 324 (423)
Q Consensus 247 ~~~~~~~~~~~~~--~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~ 324 (423)
||.+......... .+...+.+++|+|+|++|++|+.|+.|++||..+++.+..+. +|...|.+++|+|+|++|+++
T Consensus 267 wd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~--~h~~~v~~l~~spdg~~l~sg 344 (354)
T 2pbi_B 267 YDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF--GHENRVSTLRVSPDGTAFCSG 344 (354)
T ss_dssp EETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC--CCSSCEEEEEECTTSSCEEEE
T ss_pred EECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE--CCCCcEEEEEECCCCCEEEEE
Confidence 9987655433332 233468899999999999999999999999999888777663 699999999999999999999
Q ss_pred eCCCcEEEEe
Q psy13076 325 SGDKTCKLWD 334 (423)
Q Consensus 325 s~d~~i~iwd 334 (423)
+.|++|++|+
T Consensus 345 s~D~~v~vW~ 354 (354)
T 2pbi_B 345 SWDHTLRVWA 354 (354)
T ss_dssp ETTSEEEEEC
T ss_pred cCCCCEEecC
Confidence 9999999996
No 48
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=8.7e-40 Score=305.82 Aligned_cols=293 Identities=17% Similarity=0.193 Sum_probs=226.0
Q ss_pred CceeecccccCceeEEEEeCCC-CeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEE
Q psy13076 38 TPIRVIKGHNKPITALALSPDR-GTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIR 116 (423)
Q Consensus 38 ~~~~~~~gh~~~V~~l~~~~~~-~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 116 (423)
.+...+.+|.++|.+++|+|++ ++|++|+.|++|++||+.++.....+
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------------------------------- 112 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI------------------------------- 112 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE-------------------------------
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee-------------------------------
Confidence 3456788999999999999998 89999999999999999865432211
Q ss_pred ecCCCcccccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEc
Q psy13076 117 NIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGE 195 (423)
Q Consensus 117 ~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~ 195 (423)
.+.+|...|.+++|+| ++.++++++.|+.|++||+............
T Consensus 113 ---------~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----------------------- 160 (383)
T 3ei3_B 113 ---------QGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTD----------------------- 160 (383)
T ss_dssp ---------CCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCC-----------------------
T ss_pred ---------ecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccC-----------------------
Confidence 1236889999999999 7899999999999999998753211111111
Q ss_pred CCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCC
Q psy13076 196 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGS 275 (423)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~ 275 (423)
.+...+.+++|+|++.+ +++++.|+.|++|+.. .+....+..|...|.+++|+|+++
T Consensus 161 ---------------------~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~ 217 (383)
T 3ei3_B 161 ---------------------SWDYWYCCVDVSVSRQM-LATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCD 217 (383)
T ss_dssp ---------------------CSSCCEEEEEEETTTTE-EEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCT
T ss_pred ---------------------CCCCCeEEEEECCCCCE-EEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCC
Confidence 12234555556665553 7788999999999974 455566778999999999999999
Q ss_pred -EEEEEEecCeEEEEECCC----ccceecccccccCCCeEEEEECC-CCCeEEEEeCCCcEEEEecCCcceeeeeeeCce
Q psy13076 276 -HFASAGFDGKVFLYDGAS----ADLVSELGNPAHKGGVYAVAWKP-DGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQ 349 (423)
Q Consensus 276 -~l~s~s~dg~i~vwd~~~----~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~ 349 (423)
++++++.|+.|++||+++ +..+..+ .|...|.+++|+| ++++|++++.|+.|++||+++++.+..+.....
T Consensus 218 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 294 (383)
T 3ei3_B 218 WLMATSSVDATVKLWDLRNIKDKNSYIAEM---PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH 294 (383)
T ss_dssp TEEEEEETTSEEEEEEGGGCCSTTCEEEEE---ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCB
T ss_pred CEEEEEeCCCEEEEEeCCCCCcccceEEEe---cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccc
Confidence 999999999999999987 4444443 4889999999999 999999999999999999998877665542211
Q ss_pred e----------------EeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEecc--CCCceeEEEecCCCCeEEEec
Q psy13076 350 V----------------EDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKG--HNKPITALALSPDRGTVFTGS 411 (423)
Q Consensus 350 ~----------------~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~--h~~~v~~i~~sp~~~~l~s~s 411 (423)
. ....+.+.++|.+ +++.++.|++||+.+.. .+..+.+ |...+..++|+|++++|++++
T Consensus 295 ~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~-~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s 371 (383)
T 3ei3_B 295 RQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGG-LVHQLRDPNAAGIISLNKFSPTGDVLASGM 371 (383)
T ss_dssp CCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCC-EEEEECBTTBCSCCCEEEECTTSSEEEEEE
T ss_pred cccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCc-eeeeecCCCCCceEEEEEEecCccEEEEec
Confidence 0 0111223345555 66789999999998854 4567776 567788889999999999997
Q ss_pred CCCcEEEeeCCC
Q psy13076 412 HDGFITRWNAKT 423 (423)
Q Consensus 412 ~D~~i~~W~~~~ 423 (423)
|+.|++||+++
T Consensus 372 -d~~i~iw~~~~ 382 (383)
T 3ei3_B 372 -GFNILIWNRED 382 (383)
T ss_dssp -TTEEEEEECC-
T ss_pred -CCcEEEEecCC
Confidence 99999999874
No 49
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.5e-39 Score=293.50 Aligned_cols=257 Identities=21% Similarity=0.309 Sum_probs=197.6
Q ss_pred eeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecC
Q psy13076 40 IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIE 119 (423)
Q Consensus 40 ~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 119 (423)
+.++.+|.++|.+++|+|++++|+||+.|++|++||+++..
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~--------------------------------------- 42 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET--------------------------------------- 42 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC---------------------------------------
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC---------------------------------------
Confidence 35788999999999999999999999999999999986421
Q ss_pred CCcccccccCCcceEEEEEECCC--CCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC
Q psy13076 120 NPAISDIYTEHSCAVNVAKYSPS--GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR 197 (423)
Q Consensus 120 ~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~ 197 (423)
.+....+.+|...|++++|+|+ +++|+||+.|++|++||+++++......+..+..+|.+++|+|+..
T Consensus 43 -~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~--------- 112 (297)
T 2pm7_B 43 -HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY--------- 112 (297)
T ss_dssp -BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGG---------
T ss_pred -cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCC---------
Confidence 1123356789999999999874 8999999999999999987653211112222334444454444310
Q ss_pred ceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce--eeeeccccccCeEEEEECCC--
Q psy13076 198 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK--FKMTKQEHSRFVQAVRYSPS-- 273 (423)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~--~~~~~~~~~~~i~~l~~s~~-- 273 (423)
+. .+++++.|+.|++|+.+... .......|...|.+++|+|+
T Consensus 113 ---------------------------------g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 158 (297)
T 2pm7_B 113 ---------------------------------GP-MLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 158 (297)
T ss_dssp ---------------------------------CS-EEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-
T ss_pred ---------------------------------Cc-EEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcc
Confidence 22 47788999999999875432 13445678889999999997
Q ss_pred -----------CCEEEEEEecCeEEEEECCCcc----ceecccccccCCCeEEEEECCCC---CeEEEEeCCCcEEEEec
Q psy13076 274 -----------GSHFASAGFDGKVFLYDGASAD----LVSELGNPAHKGGVYAVAWKPDG---TQLLTASGDKTCKLWDI 335 (423)
Q Consensus 274 -----------g~~l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~~~~i~~l~~~~~~---~~l~s~s~d~~i~iwd~ 335 (423)
+++|++|+.|+.|++||.++++ ....+ .+|...|.+++|+|++ ++|++++.|++|++||+
T Consensus 159 ~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l--~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL--EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp -----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE--CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred cccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe--cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 5799999999999999988765 33334 4699999999999985 89999999999999998
Q ss_pred CCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEE--eccCCCceeEEEecCCCCeEEEecCC
Q psy13076 336 ETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRV--IKGHNKPITALALSPDRGTVFTGSHD 413 (423)
Q Consensus 336 ~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~--~~~h~~~v~~i~~sp~~~~l~s~s~D 413 (423)
.+...... ... ..+|...|++++|+|++++|++++.|
T Consensus 237 ~~~~~~~~-----------------------------------------~~~~~~~~~~~~v~~~~~s~~g~~las~~~D 275 (297)
T 2pm7_B 237 DNEQGPWK-----------------------------------------KTLLKEEKFPDVLWRASWSLSGNVLALSGGD 275 (297)
T ss_dssp SSTTSCCE-----------------------------------------EEESSSSCCSSCEEEEEECSSSCCEEEEETT
T ss_pred CCCCCccc-----------------------------------------eeeeecccCCCcEEEEEECCCCCEEEEEcCC
Confidence 76421000 001 14678899999999999999999999
Q ss_pred CcEEEeeCC
Q psy13076 414 GFITRWNAK 422 (423)
Q Consensus 414 ~~i~~W~~~ 422 (423)
++|++|+..
T Consensus 276 ~~v~lw~~~ 284 (297)
T 2pm7_B 276 NKVTLWKEN 284 (297)
T ss_dssp SCEEEEEEC
T ss_pred CcEEEEEEC
Confidence 999999864
No 50
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2e-38 Score=302.70 Aligned_cols=308 Identities=18% Similarity=0.298 Sum_probs=250.6
Q ss_pred EEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCC
Q psy13076 12 CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRG 91 (423)
Q Consensus 12 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~ 91 (423)
+.++|+++++|+.||.|++||+.+ .+++..+++|.++|.+++|+ +.+|++|+.||+|++||+++++...
T Consensus 125 ~~~~g~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~-------- 193 (445)
T 2ovr_B 125 LQFCGNRIVSGSDDNTLKVWSAVT-GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIH-------- 193 (445)
T ss_dssp EEEETTEEEEEETTSCEEEEETTT-CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEE--------
T ss_pred EEEcCCEEEEEECCCcEEEEECCC-CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEE--------
Confidence 446999999999999999999976 56788999999999999998 5699999999999999998764432
Q ss_pred CceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeee
Q psy13076 92 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 171 (423)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 171 (423)
.+.+|...|.++.|+ +.++++++.|++|++||+.+++.... +
T Consensus 194 ----------------------------------~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~--~ 235 (445)
T 2ovr_B 194 ----------------------------------TLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHV--L 235 (445)
T ss_dssp ----------------------------------EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEE--E
T ss_pred ----------------------------------EECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEE--E
Confidence 234688889999985 57899999999999999976654322 1
Q ss_pred cCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC
Q psy13076 172 HPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP 251 (423)
Q Consensus 172 ~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~ 251 (423)
..+.. .+.++.+ ++. .+++++.|+.|++|+...
T Consensus 236 ~~~~~--------------------------------------------~v~~~~~--~~~-~l~~~~~dg~i~iwd~~~ 268 (445)
T 2ovr_B 236 MGHVA--------------------------------------------AVRCVQY--DGR-RVVSGAYDFMVKVWDPET 268 (445)
T ss_dssp ECCSS--------------------------------------------CEEEEEE--CSS-CEEEEETTSCEEEEEGGG
T ss_pred cCCcc--------------------------------------------cEEEEEE--CCC-EEEEEcCCCEEEEEECCC
Confidence 12223 3444444 222 378899999999999887
Q ss_pred ceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEE
Q psy13076 252 FKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCK 331 (423)
Q Consensus 252 ~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~ 331 (423)
.+.......|...+.+++| ++.++++|+.||.|++||.++++.+..+. .|...+.++.+ ++++|++++.|+.|+
T Consensus 269 ~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~--~~~~l~~~~~dg~i~ 342 (445)
T 2ovr_B 269 ETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT--GHQSLTSGMEL--KDNILVSGNADSTVK 342 (445)
T ss_dssp TEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC--CCCSCEEEEEE--ETTEEEEEETTSCEE
T ss_pred CcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEc--CCcccEEEEEE--eCCEEEEEeCCCeEE
Confidence 7777788889999999999 78999999999999999999998877764 57888888877 467999999999999
Q ss_pred EEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEe-----ccCCCceeEEEecCCCCe
Q psy13076 332 LWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVI-----KGHNKPITALALSPDRGT 406 (423)
Q Consensus 332 iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~-----~~h~~~v~~i~~sp~~~~ 406 (423)
+||+++++.+..+...........++.+++.++++++.||.|++||+.+++. +..+ .+|..+|++++|+|++.+
T Consensus 343 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~ 421 (445)
T 2ovr_B 343 IWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF-IRNLVTLESGGSGGVVWRIRASNTKLV 421 (445)
T ss_dssp EEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE-EEEEEECTTGGGTCEEEEEEECSSEEE
T ss_pred EEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCce-eeeeeccccCCCCceEEEEEecCCEEE
Confidence 9999999888777532211222234455899999999999999999988653 4444 578999999999999999
Q ss_pred EEEecCCCc----EEEeeCC
Q psy13076 407 VFTGSHDGF----ITRWNAK 422 (423)
Q Consensus 407 l~s~s~D~~----i~~W~~~ 422 (423)
|++|+.||+ |.+||..
T Consensus 422 la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 422 CAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp EEEECSSSSSCCEEEEEECC
T ss_pred EEEcccCCCCccEEEEEECC
Confidence 999999998 9999975
No 51
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-39 Score=305.88 Aligned_cols=319 Identities=17% Similarity=0.242 Sum_probs=257.2
Q ss_pred eeEEEEeCC-EEEEEeccceEEEEec----cCCCC-----ceeeccc----------ccCceeEEEEeCCCCeEEEecCC
Q psy13076 9 QVSCLWQGD-YLLTVSLSGFISYLDV----NNPST-----PIRVIKG----------HNKPITALALSPDRGTVFTGSHD 68 (423)
Q Consensus 9 ~~~~~~~~~-~~~~~~~dg~i~~~d~----~~~~~-----~~~~~~g----------h~~~V~~l~~~~~~~~l~sg~~D 68 (423)
++++++||+ +||+++.||.|++||+ .++.. +...+.. |.++|.+++|+|++++|++|+.|
T Consensus 50 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 129 (425)
T 1r5m_A 50 SSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVEN 129 (425)
T ss_dssp EEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETT
T ss_pred EEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCC
Confidence 456667899 9999999999999999 76442 3334433 78899999999999999999999
Q ss_pred CceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEE
Q psy13076 69 GFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIAS 148 (423)
Q Consensus 69 ~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s 148 (423)
+.|++||. ++... ..+.+|...|.+++|+|+++++++
T Consensus 130 g~i~i~~~-~~~~~------------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~ 166 (425)
T 1r5m_A 130 GELRLWNK-TGALL------------------------------------------NVLNFHRAPIVSVKWNKDGTHIIS 166 (425)
T ss_dssp SCEEEEET-TSCEE------------------------------------------EEECCCCSCEEEEEECTTSSEEEE
T ss_pred CeEEEEeC-CCCee------------------------------------------eeccCCCccEEEEEECCCCCEEEE
Confidence 99999993 32221 124568889999999999999999
Q ss_pred EccCCcEEEEEcCCCceeEEeeecCCCCC---------------eeEEEECCCCCeEEEEEcCCceeeEEEeecCCccee
Q psy13076 149 GDISGKVRIWDTVNKEHILKNEFHPIGGP---------------IKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVG 213 (423)
Q Consensus 149 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---------------v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (423)
++.|+.|++||+.+++....... .... +.+++|+|++. +++++. +....+|+...+..+.
T Consensus 167 ~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~g~i~~~d~~~~~~~~ 241 (425)
T 1r5m_A 167 MDVENVTILWNVISGTVMQHFEL--KETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGP--KGAIFVYQITEKTPTG 241 (425)
T ss_dssp EETTCCEEEEETTTTEEEEEECC--C---------------CCCBSCCEEEETTE-EEEECG--GGCEEEEETTCSSCSE
T ss_pred EecCCeEEEEECCCCcEEEEeec--cccCccceeeccccCCcceeeEEEEcCCCE-EEEEcC--CCeEEEEEcCCCceee
Confidence 99999999999988765543322 2233 88999999865 444433 3345778888888888
Q ss_pred cccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCC
Q psy13076 214 EISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGAS 293 (423)
Q Consensus 214 ~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~ 293 (423)
.+..|...+.+++|+|++.+ +++++.|+.|++|+....+.......|...+.+++|+|++ ++++++.||.|++||.++
T Consensus 242 ~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~ 319 (425)
T 1r5m_A 242 KLIGHHGPISVLEFNDTNKL-LLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ 319 (425)
T ss_dssp EECCCSSCEEEEEEETTTTE-EEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT
T ss_pred eeccCCCceEEEEECCCCCE-EEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC
Confidence 88889999999999999885 8899999999999988777666777888999999999999 999999999999999999
Q ss_pred ccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcc--------------------eeeeeeeCcee-Ee
Q psy13076 294 ADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKS--------------------AVSEFLMGNQV-ED 352 (423)
Q Consensus 294 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~--------------------~i~~~~~~~~~-~~ 352 (423)
++.+..+. .|...+.+++|+|++++|++++.|+.|++||+.+++ .+..+...... ..
T Consensus 320 ~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 397 (425)
T 1r5m_A 320 NTLLALSI--VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYI 397 (425)
T ss_dssp TEEEEEEE--CTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCE
T ss_pred CcEeEecc--cCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCce
Confidence 88777664 578899999999999999999999999999999887 66666443222 45
Q ss_pred eEEEEEecCcEEEEEeCCCcEEEEecC
Q psy13076 353 QQVSCLWQGDYLLTVSLSGFISYLDVN 379 (423)
Q Consensus 353 ~~~~~~~~g~~l~~~~~~~~i~~~~~~ 379 (423)
..+...+++.+|++++.+|.+++|++.
T Consensus 398 ~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 398 FDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EEEEccCCCceEEEEecCceEEEEeec
Confidence 566677899999999999999999874
No 52
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.5e-39 Score=300.00 Aligned_cols=292 Identities=15% Similarity=0.206 Sum_probs=227.4
Q ss_pred ecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCC
Q psy13076 42 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENP 121 (423)
Q Consensus 42 ~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 121 (423)
.+..|.++|.+++|+|++++|++|+.|+.|++||.++++..
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~--------------------------------------- 43 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV--------------------------------------- 43 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE---------------------------------------
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEE---------------------------------------
Confidence 45569999999999999999999999999999998765310
Q ss_pred cccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceee
Q psy13076 122 AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFG 201 (423)
Q Consensus 122 ~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~ 201 (423)
....+.+|...|++++|+|+++++++++.|+.|++||+++.+.........+...|.+++|+|+++.
T Consensus 44 -~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------ 110 (372)
T 1k8k_C 44 -QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK------------ 110 (372)
T ss_dssp -EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSE------------
T ss_pred -eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCE------------
Confidence 1123457889999999999999999999999999999977654433333334455666666665543
Q ss_pred EEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce----eeeeccccccCeEEEEECCCCCEE
Q psy13076 202 HVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK----FKMTKQEHSRFVQAVRYSPSGSHF 277 (423)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~----~~~~~~~~~~~i~~l~~s~~g~~l 277 (423)
+++++.|+.+++|+..... .......|...|.+++|+|++++|
T Consensus 111 ---------------------------------l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 157 (372)
T 1k8k_C 111 ---------------------------------FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 157 (372)
T ss_dssp ---------------------------------EEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE
T ss_pred ---------------------------------EEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEE
Confidence 5566777888888754332 223335678889999999999999
Q ss_pred EEEEecCeEEEEECC------------------CccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcc
Q psy13076 278 ASAGFDGKVFLYDGA------------------SADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKS 339 (423)
Q Consensus 278 ~s~s~dg~i~vwd~~------------------~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~ 339 (423)
++++.||.|++||.. .++....+. .|...+.+++|+|++++|++++.|+.|++||+++++
T Consensus 158 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 235 (372)
T 1k8k_C 158 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS--SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM 235 (372)
T ss_dssp EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC--CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT
T ss_pred EEEcCCCCEEEEEcccccccccccccccccccchhhheEecC--CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 999999999999953 455555553 588899999999999999999999999999999998
Q ss_pred eeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCC--CC-------------------------------Cce-
Q psy13076 340 AVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNN--PS-------------------------------TPI- 385 (423)
Q Consensus 340 ~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~--~~-------------------------------~~~- 385 (423)
.+..+... ......+...+++.+++++ .++.+++|++.+ +. ...
T Consensus 236 ~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (372)
T 1k8k_C 236 AVATLASE-TLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG 313 (372)
T ss_dssp EEEEEECS-SCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC----
T ss_pred eeEEEccC-CCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccccccc
Confidence 88777543 2234456667788888877 899999999977 21 000
Q ss_pred -----EEe-ccCCCceeEEEec-CCC---CeEEEecCCCcEEEeeCC
Q psy13076 386 -----RVI-KGHNKPITALALS-PDR---GTVFTGSHDGFITRWNAK 422 (423)
Q Consensus 386 -----~~~-~~h~~~v~~i~~s-p~~---~~l~s~s~D~~i~~W~~~ 422 (423)
..+ .+|..+|++++|+ +++ ++|+|||.||.|++|++.
T Consensus 314 ~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 314 SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp -----CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred CccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEec
Confidence 222 4999999999977 565 899999999999999974
No 53
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.3e-39 Score=302.37 Aligned_cols=289 Identities=15% Similarity=0.125 Sum_probs=205.3
Q ss_pred eeeEEEEeCCEEEEEeccc-------eEEEEeccCCCCce---------eecccccCceeEEEEeCCCCeEEEe------
Q psy13076 8 QQVSCLWQGDYLLTVSLSG-------FISYLDVNNPSTPI---------RVIKGHNKPITALALSPDRGTVFTG------ 65 (423)
Q Consensus 8 ~~~~~~~~~~~~~~~~~dg-------~i~~~d~~~~~~~~---------~~~~gh~~~V~~l~~~~~~~~l~sg------ 65 (423)
|.+++++||++|++|+.|. .|++|++..+.... ..|.+|.+.|.++++++ ..+++|
T Consensus 18 ~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~--~~~~~g~~~~~~ 95 (365)
T 4h5i_A 18 YGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK--GIILVGCNENST 95 (365)
T ss_dssp EEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET--TEEEEECCCCHH
T ss_pred EEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC--CEEEEEECCCcc
Confidence 6788888999999987643 59999987544321 24678999999988764 455554
Q ss_pred -----cCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEEC
Q psy13076 66 -----SHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYS 140 (423)
Q Consensus 66 -----~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~s 140 (423)
+.|+++|+|++++..... ..... ........+...+.+++|+
T Consensus 96 ~l~s~~~d~~~r~~~~~~~~~~~------------------------------~~~~~---~~~~~~~~~~~~~~~v~fS 142 (365)
T 4h5i_A 96 KITQGKGNKHLRKFKYDKVNDQL------------------------------EFLTS---VDFDASTNADDYTKLVYIS 142 (365)
T ss_dssp HHHHTSCCCCEEEEEEETTTTEE------------------------------EEEEE---ECSSCCCCTTCCEEEEEEC
T ss_pred EEEEecCCCcEEEEEecCCCceE------------------------------EEeee---eceeecCCcccCEEEEEEc
Confidence 456667777654321100 00000 0001122344568899999
Q ss_pred CCCCEEE--EEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCC
Q psy13076 141 PSGFYIA--SGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ 218 (423)
Q Consensus 141 p~~~~l~--s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (423)
|||++++ +++.|++|+|||.++.+...... +..+|.+++|+|||++++++
T Consensus 143 pDg~~la~as~~~d~~i~iwd~~~~~~~~~~~---~~~~V~~v~fspdg~~l~s~------------------------- 194 (365)
T 4h5i_A 143 REGTVAAIASSKVPAIMRIIDPSDLTEKFEIE---TRGEVKDLHFSTDGKVVAYI------------------------- 194 (365)
T ss_dssp TTSSCEEEEESCSSCEEEEEETTTTEEEEEEE---CSSCCCEEEECTTSSEEEEE-------------------------
T ss_pred CCCCEEEEEECCCCCEEEEeECCCCcEEEEeC---CCCceEEEEEccCCceEEec-------------------------
Confidence 9999976 45579999999998877654332 34678889999988765543
Q ss_pred CcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce-eeeeccccccCeEEEEECCCCCEEEEEEecC----eEEEEECCC
Q psy13076 219 SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK-FKMTKQEHSRFVQAVRYSPSGSHFASAGFDG----KVFLYDGAS 293 (423)
Q Consensus 219 ~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~-~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg----~i~vwd~~~ 293 (423)
+.++.+.+|...... .......|...+.+++|+|+|+++++++.|+ .++.|+...
T Consensus 195 --------------------s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~ 254 (365)
T 4h5i_A 195 --------------------TGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKS 254 (365)
T ss_dssp --------------------CSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET
T ss_pred --------------------cceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccc
Confidence 322222223222211 1233456777899999999999999999988 688898766
Q ss_pred ccce--ecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCC
Q psy13076 294 ADLV--SELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSG 371 (423)
Q Consensus 294 ~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~ 371 (423)
.... .......|...|++++|+|+|++|++|+.|++|+|||+++++++.+
T Consensus 255 ~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~---------------------------- 306 (365)
T 4h5i_A 255 GNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKI---------------------------- 306 (365)
T ss_dssp TEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEE----------------------------
T ss_pred ceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEE----------------------------
Confidence 5432 1122246888999999999999999999999999999988754322
Q ss_pred cEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076 372 FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 422 (423)
Q Consensus 372 ~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~ 422 (423)
.+.+|..+|++++||||+++|||||.|++||+|++.
T Consensus 307 ---------------~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 307 ---------------FKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp ---------------ETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred ---------------ecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 246899999999999999999999999999999974
No 54
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-38 Score=299.44 Aligned_cols=277 Identities=25% Similarity=0.352 Sum_probs=226.7
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccC------------------ceeEEEEeCCCCeEEEecCCCc
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNK------------------PITALALSPDRGTVFTGSHDGF 70 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~------------------~V~~l~~~~~~~~l~sg~~D~~ 70 (423)
++++++||++||+++ ++.+++|++.+ .+.+..+.+|.. .|.+++|+|++++|++|+.|++
T Consensus 69 ~v~fspdg~~la~g~-~~~v~i~~~~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~ 146 (393)
T 1erj_A 69 CVKFSNDGEYLATGC-NKTTQVYRVSD-GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL 146 (393)
T ss_dssp EEEECTTSSEEEEEC-BSCEEEEETTT-CCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSC
T ss_pred EEEECCCCCEEEEEc-CCcEEEEEecC-CCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCe
Confidence 566677999999876 78999999976 345556665532 4999999999999999999999
Q ss_pred eEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEc
Q psy13076 71 ITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD 150 (423)
Q Consensus 71 i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~ 150 (423)
|++||+++++... .+.+|...|.+++|+|++++|++++
T Consensus 147 i~iwd~~~~~~~~------------------------------------------~~~~h~~~v~~~~~~p~~~~l~s~s 184 (393)
T 1erj_A 147 IRIWDIENRKIVM------------------------------------------ILQGHEQDIYSLDYFPSGDKLVSGS 184 (393)
T ss_dssp EEEEETTTTEEEE------------------------------------------EECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEECCCCcEEE------------------------------------------EEccCCCCEEEEEEcCCCCEEEEec
Confidence 9999998754322 3457999999999999999999999
Q ss_pred cCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECC-CCCeEEEEEcCCceeeEEEeecCCcceecc-------cCCCcce
Q psy13076 151 ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP-DNQRMVVVGEGRERFGHVFMSETGTSVGEI-------SGQSKPI 222 (423)
Q Consensus 151 ~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i 222 (423)
.|++|++||+++++...... ....+.+++|+| +++++++++.+. ..++|+..++..+..+ .+|...|
T Consensus 185 ~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~s~d~--~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v 259 (393)
T 1erj_A 185 GDRTVRIWDLRTGQCSLTLS---IEDGVTTVAVSPGDGKYIAAGSLDR--AVRVWDSETGFLVERLDSENESGTGHKDSV 259 (393)
T ss_dssp TTSEEEEEETTTTEEEEEEE---CSSCEEEEEECSTTCCEEEEEETTS--CEEEEETTTCCEEEEEC------CCCSSCE
T ss_pred CCCcEEEEECCCCeeEEEEE---cCCCcEEEEEECCCCCEEEEEcCCC--cEEEEECCCCcEEEeecccccCCCCCCCCE
Confidence 99999999998876554332 346789999999 788887776543 3578887777665554 5688899
Q ss_pred eEEEEecCCCeeEEEEeCCCeEEEEcCCCc------------eeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEE
Q psy13076 223 NSCDFKPSRPFRIITGSEDNTIAVFEGPPF------------KFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYD 290 (423)
Q Consensus 223 ~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~------------~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd 290 (423)
.+++|+|++.+ +++++.|+.|++|+.... .....+..|...|.+++|+|++++|++|+.|+.|++||
T Consensus 260 ~~v~~~~~g~~-l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd 338 (393)
T 1erj_A 260 YSVVFTRDGQS-VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 338 (393)
T ss_dssp EEEEECTTSSE-EEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEE
T ss_pred EEEEECCCCCE-EEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 99999999876 899999999999997532 23345667889999999999999999999999999999
Q ss_pred CCCccceecccccccCCCeEEEEECC------CCCeEEEEeCCCcEEEEecCC
Q psy13076 291 GASADLVSELGNPAHKGGVYAVAWKP------DGTQLLTASGDKTCKLWDIET 337 (423)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~i~~l~~~~------~~~~l~s~s~d~~i~iwd~~~ 337 (423)
.++++.+..+ .+|...|.+++|+| ++++|++|+.|++|++|+++.
T Consensus 339 ~~~~~~~~~l--~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 339 KKSGNPLLML--QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp TTTCCEEEEE--ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CCCCeEEEEE--CCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 9999887766 46999999999986 688999999999999999764
No 55
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1e-38 Score=299.69 Aligned_cols=321 Identities=17% Similarity=0.168 Sum_probs=239.6
Q ss_pred ceeeEEEEeCCEEEEEeccceEEEEeccCCC-----CceeecccccCceeEEEEeCC----C---CeEEEecCCCceEEe
Q psy13076 7 DQQVSCLWQGDYLLTVSLSGFISYLDVNNPS-----TPIRVIKGHNKPITALALSPD----R---GTVFTGSHDGFITRW 74 (423)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~-----~~~~~~~gh~~~V~~l~~~~~----~---~~l~sg~~D~~i~vW 74 (423)
+.+.++.|..++|++++.||.|++||+.... .+...+.+|..+|.+++|+|+ + ++|++++.|+.|++|
T Consensus 17 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw 96 (397)
T 1sq9_A 17 ADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFY 96 (397)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEE
T ss_pred cCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEE
Confidence 4455666777999999999999999998644 257788999999999999999 9 999999999999999
Q ss_pred ecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCC-----cceEEEEEEC----CCCCE
Q psy13076 75 NAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEH-----SCAVNVAKYS----PSGFY 145 (423)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h-----~~~i~~~~~s----p~~~~ 145 (423)
|++++.... ......+.+| ...|.+++|+ |++++
T Consensus 97 ~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 139 (397)
T 1sq9_A 97 RITREDETK-------------------------------------KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSH 139 (397)
T ss_dssp EEEECTTTC-------------------------------------CEEEEEECCSCTTGGGSCEEEEEEECCC----CE
T ss_pred EccCCcccc-------------------------------------cccceeecccccccCCCcEEEEEEeeccCCCCce
Confidence 987643200 0001123445 5889999999 99999
Q ss_pred -EEEEccCCcEEEEEcCC------CceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCC
Q psy13076 146 -IASGDISGKVRIWDTVN------KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ 218 (423)
Q Consensus 146 -l~s~~~d~~i~vwd~~~------~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (423)
+++++.|+.|++||+.+ .+... |.|.+..... ......+
T Consensus 140 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------------~~~~~~~~~~-------------------~~~~~~~ 185 (397)
T 1sq9_A 140 RLVATDVKGTTYIWKFHPFADESNSLTLN---------------WSPTLELQGT-------------------VESPMTP 185 (397)
T ss_dssp EEEEEETTSCEEEEEEESSSSHHHHTTTC---------------CCCEEEEEEE-------------------ECCSSSS
T ss_pred EEEEEeCCCcEEEEeCCccccccccceee---------------ccCcceeeee-------------------eccccCC
Confidence 99999999999999876 22111 1111100000 0011235
Q ss_pred CcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccc---c---ccCeEEEEECCCCCEEEEEEec---CeEEEE
Q psy13076 219 SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE---H---SRFVQAVRYSPSGSHFASAGFD---GKVFLY 289 (423)
Q Consensus 219 ~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~---~---~~~i~~l~~s~~g~~l~s~s~d---g~i~vw 289 (423)
...+.+++|+|++ .+++++.|+.|++|+....+....+.. | ...|.+++|+|++++|++++.| |.|++|
T Consensus 186 ~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~ 263 (397)
T 1sq9_A 186 SQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY 263 (397)
T ss_dssp CCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEE
T ss_pred CCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEE
Confidence 5678888888887 588899999999999988777777777 8 8899999999999999999999 999999
Q ss_pred ECCCccceecccccc-----------cCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEE
Q psy13076 290 DGASADLVSELGNPA-----------HKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCL 358 (423)
Q Consensus 290 d~~~~~~~~~~~~~~-----------~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~ 358 (423)
|.++++.+..+.... |...|.+++|+|++++|++++.|+.|++||+.+++.+..+........
T Consensus 264 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~------ 337 (397)
T 1sq9_A 264 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE------ 337 (397)
T ss_dssp ETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS------
T ss_pred ECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCccc------
Confidence 999988777664211 889999999999999999999999999999998877665531100000
Q ss_pred ecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCC----------CeEEEecCCCcEEEeeCCC
Q psy13076 359 WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDR----------GTVFTGSHDGFITRWNAKT 423 (423)
Q Consensus 359 ~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~----------~~l~s~s~D~~i~~W~~~~ 423 (423)
.. . +... ...+....|..+|++++|+|++ ++|++++.||.|++|++++
T Consensus 338 -~~-------~-------~~~~--g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 338 -IE-------E-------DILA--VDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp -SG-------G-------GCCC--BCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred -ch-------h-------hhhc--cccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 00 0 0000 0112235579999999999998 7999999999999999864
No 56
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-40 Score=311.96 Aligned_cols=351 Identities=12% Similarity=0.086 Sum_probs=251.8
Q ss_pred EEEeCCEEEEEeccceEEEEeccCCCCceeec-ccccCceeEEEEeC-CCCeEEEecCCCceEEeecCCcceeecccCCC
Q psy13076 12 CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVI-KGHNKPITALALSP-DRGTVFTGSHDGFITRWNAKTEYIFATLPRTQ 89 (423)
Q Consensus 12 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~gh~~~V~~l~~~~-~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~ 89 (423)
+.+++..+++++ .|+.. .+++..+ ++|.++|++++|+| ++++|+||+.||+|++||+++.......
T Consensus 35 f~~~~~~~~~~~------~w~~~--g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~---- 102 (437)
T 3gre_A 35 FGPIQEIVRSPN------MGNLR--GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVY---- 102 (437)
T ss_dssp GCCCCCCCCCCC------GGGCC--CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCC----
T ss_pred cCCccccccccc------ccccc--ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccc----
Confidence 455777777665 37643 5677788 89999999999999 9999999999999999998752100000
Q ss_pred CCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcC---CCcee
Q psy13076 90 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV---NKEHI 166 (423)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~---~~~~~ 166 (423)
..... .+|...|.+++|+|++++|++++.|++|++||++ +++..
T Consensus 103 --------------------------------~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 149 (437)
T 3gre_A 103 --------------------------------SSSLT-YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEV 149 (437)
T ss_dssp --------------------------------SCSEE-EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEE
T ss_pred --------------------------------ceeee-ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCcee
Confidence 00001 1488899999999999999999999999999984 33222
Q ss_pred E--------EeeecC--CCCCeeEEE--ECCCCCeEEEEEcCCceeeEEEeecCCcceecccC--CCcceeEEEEecCCC
Q psy13076 167 L--------KNEFHP--IGGPIKDIA--WSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISG--QSKPINSCDFKPSRP 232 (423)
Q Consensus 167 ~--------~~~~~~--~~~~v~~v~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~ 232 (423)
. ...+.. ....+.++. ++|++..+++++.+ ....+|+...+..+..+.. |...|.+++|+|++.
T Consensus 150 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 227 (437)
T 3gre_A 150 KFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL--SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECC 227 (437)
T ss_dssp EEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT--SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSC
T ss_pred eccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCC
Confidence 1 112222 345666666 66888888877654 3467888888888888877 788999999999977
Q ss_pred eeEEEEeCCCeEEEEcCCCceeeeecc-ccccCeEEEEEC----CCCCEEEEEEecCeEEEEECCCccceeccccc----
Q psy13076 233 FRIITGSEDNTIAVFEGPPFKFKMTKQ-EHSRFVQAVRYS----PSGSHFASAGFDGKVFLYDGASADLVSELGNP---- 303 (423)
Q Consensus 233 ~~~~s~s~d~~i~~~~~~~~~~~~~~~-~~~~~i~~l~~s----~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~---- 303 (423)
+ +++++.|+.|++||.+..+...... .|...|.+++|+ |++.+|++|+.||.|++||.++++....+...
T Consensus 228 ~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 306 (437)
T 3gre_A 228 V-LILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQP 306 (437)
T ss_dssp E-EEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCC
T ss_pred E-EEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCC
Confidence 5 8999999999999988777666554 677789999555 56889999999999999999988765544311
Q ss_pred --------------------ccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCce--eEeeEEEEEecC
Q psy13076 304 --------------------AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQ--VEDQQVSCLWQG 361 (423)
Q Consensus 304 --------------------~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~--~~~~~~~~~~~g 361 (423)
.|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+..... ..........+.
T Consensus 307 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (437)
T 3gre_A 307 SMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANL 385 (437)
T ss_dssp CGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTE
T ss_pred ccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecce
Confidence 267779999999 789999999999999999999988776643211 111111111122
Q ss_pred cEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCC--CCeEEEecCCCcEEEee
Q psy13076 362 DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPD--RGTVFTGSHDGFITRWN 420 (423)
Q Consensus 362 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~--~~~l~s~s~D~~i~~W~ 420 (423)
.+++.. ++... .........|...|++++|+++ +.+|+||+.||+|++|+
T Consensus 386 ~~~~~~--------~~~~~-~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 386 TMLLRK--------MKRTS-THSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEE--------CC--------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EEEEEe--------ccccc-ccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 222211 11111 2223445679999999999998 77999999999999995
No 57
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=300.12 Aligned_cols=325 Identities=19% Similarity=0.253 Sum_probs=246.5
Q ss_pred eccceEEEEeccCCCCceeecccccCceeEEEEeC-CCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCC
Q psy13076 23 SLSGFISYLDVNNPSTPIRVIKGHNKPITALALSP-DRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPK 101 (423)
Q Consensus 23 ~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~-~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (423)
+.++.+++|+++. .+....+++|.++|++++|+| ++++|++|+.||+|++||++++.....+...
T Consensus 20 ~~~~~~~v~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~------------- 85 (408)
T 4a11_B 20 RAESTRRVLGLEL-NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK------------- 85 (408)
T ss_dssp HHHHHHHHHTEEE-CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC-------------
T ss_pred eccCcceeecccc-CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecc-------------
Confidence 3456778888865 456778999999999999999 9999999999999999999875432221100
Q ss_pred CCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeE
Q psy13076 102 GKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKD 180 (423)
Q Consensus 102 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~ 180 (423)
.. . ........+|...|.+++|+| ++.++++++.|+.|++||+.+.+...... ....+.+
T Consensus 86 ----------~~--~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~ 146 (408)
T 4a11_B 86 ----------AV--C----SIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN---FEETVYS 146 (408)
T ss_dssp ----------EE--E----EECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE---CSSCEEE
T ss_pred ----------cc--c----cccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc---CCCceee
Confidence 00 0 000112356999999999999 78899999999999999998776543322 2345566
Q ss_pred EEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccc
Q psy13076 181 IAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE 260 (423)
Q Consensus 181 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~ 260 (423)
+.|+|.+. ++ ..+++++.++.+++|+.........+..
T Consensus 147 ~~~~~~~~-----------------------------------------~~-~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 184 (408)
T 4a11_B 147 HHMSPVST-----------------------------------------KH-CLVAVGTRGPKVQLCDLKSGSCSHILQG 184 (408)
T ss_dssp EEECSSCS-----------------------------------------SC-CEEEEEESSSSEEEEESSSSCCCEEECC
T ss_pred eEeecCCC-----------------------------------------CC-cEEEEEcCCCeEEEEeCCCcceeeeecC
Confidence 66665421 11 1477889999999999887777777788
Q ss_pred cccCeEEEEECCCCC-EEEEEEecCeEEEEECCCcc-ceecc-------------cccccCCCeEEEEECCCCCeEEEEe
Q psy13076 261 HSRFVQAVRYSPSGS-HFASAGFDGKVFLYDGASAD-LVSEL-------------GNPAHKGGVYAVAWKPDGTQLLTAS 325 (423)
Q Consensus 261 ~~~~i~~l~~s~~g~-~l~s~s~dg~i~vwd~~~~~-~~~~~-------------~~~~~~~~i~~l~~~~~~~~l~s~s 325 (423)
|...|.+++|+|+++ ++++|+.||.|++||.+++. ....+ ....|...|.+++|+|++++|++++
T Consensus 185 ~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 264 (408)
T 4a11_B 185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG 264 (408)
T ss_dssp CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence 999999999999999 58999999999999997665 22211 1135888999999999999999999
Q ss_pred CCCcEEEEecCCcceeeeeeeCc---eeEeeEEEE-EecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEec
Q psy13076 326 GDKTCKLWDIETKSAVSEFLMGN---QVEDQQVSC-LWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALS 401 (423)
Q Consensus 326 ~d~~i~iwd~~~~~~i~~~~~~~---~~~~~~~~~-~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~s 401 (423)
.|+.|++||+.+++....+.... ......+.. ...+..+++++.++.+++||+.+. .++..+.+|..+|++++|+
T Consensus 265 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~s 343 (408)
T 4a11_B 265 TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG-EQITMLKGHYKTVDCCVFQ 343 (408)
T ss_dssp TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC-CEEEEECCCSSCEEEEEEE
T ss_pred CCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC-cceeeeccCCCeEEEEEEc
Confidence 99999999999877544332111 001111111 124566777788999999999885 4567889999999999999
Q ss_pred CCCCeEEEecCCCcEEEeeCCC
Q psy13076 402 PDRGTVFTGSHDGFITRWNAKT 423 (423)
Q Consensus 402 p~~~~l~s~s~D~~i~~W~~~~ 423 (423)
|++++|++++.||.|++||+++
T Consensus 344 ~~~~~l~s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 344 SNFQELYSGSRDCNILAWVPSL 365 (408)
T ss_dssp TTTTEEEEEETTSCEEEEEECC
T ss_pred CCCCEEEEECCCCeEEEEeCCC
Confidence 9999999999999999999864
No 58
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.6e-37 Score=282.17 Aligned_cols=278 Identities=21% Similarity=0.353 Sum_probs=231.6
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT 88 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~ 88 (423)
.+++++||++|++++.||.|++||+.+ .+....+.+|..+|.+++|+|++++|++|+.|+.|++||+++++++.
T Consensus 28 ~~~~s~~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~----- 101 (312)
T 4ery_A 28 SVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK----- 101 (312)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-----
T ss_pred EEEECCCCCEEEEeeCCCeEEEEeCCC-cccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEE-----
Confidence 456667999999999999999999875 45677899999999999999999999999999999999998754322
Q ss_pred CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEE
Q psy13076 89 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 168 (423)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~ 168 (423)
.+.+|...|.++.|+|+++++++++.|++|++||+++.+...
T Consensus 102 -------------------------------------~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~- 143 (312)
T 4ery_A 102 -------------------------------------TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK- 143 (312)
T ss_dssp -------------------------------------EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE-
T ss_pred -------------------------------------EEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE-
Confidence 245688899999999999999999999999999998876543
Q ss_pred eeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceeccc-CCCcceeEEEEecCCCeeEEEEeCCCeEEEE
Q psy13076 169 NEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS-GQSKPINSCDFKPSRPFRIITGSEDNTIAVF 247 (423)
Q Consensus 169 ~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~ 247 (423)
.+..+..+|.+++|+|+++.+++++.+. ...+|+...+..+..+. .+..++..++|+|++.+ +++++.|+.|++|
T Consensus 144 -~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~i~iw 219 (312)
T 4ery_A 144 -TLPAHSDPVSAVHFNRDGSLIVSSSYDG--LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY-ILAATLDNTLKLW 219 (312)
T ss_dssp -EECCCSSCEEEEEECTTSSEEEEEETTS--CEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSE-EEEEETTTEEEEE
T ss_pred -EecCCCCcEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeeEEeccCCCceEEEEECCCCCE-EEEEcCCCeEEEE
Confidence 3445567899999999999888876543 45678877777665543 45667899999999886 8889999999999
Q ss_pred cCCCceeeeeccccccCe---EEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEE
Q psy13076 248 EGPPFKFKMTKQEHSRFV---QAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTA 324 (423)
Q Consensus 248 ~~~~~~~~~~~~~~~~~i---~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~ 324 (423)
|....+....+..|.... ......+++.++++|+.||.|++||..+++.+..+. +|...|.+++|+|++++|+++
T Consensus 220 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~p~~~~l~s~ 297 (312)
T 4ery_A 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ--GHTDVVISTACHPTENIIASA 297 (312)
T ss_dssp ETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECSSSSEEEEE
T ss_pred ECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhh--ccCCcEEEEeecCcCCceEEE
Confidence 998877766666665432 233344678899999999999999999998887774 688999999999999999999
Q ss_pred e--CCCcEEEEecC
Q psy13076 325 S--GDKTCKLWDIE 336 (423)
Q Consensus 325 s--~d~~i~iwd~~ 336 (423)
+ .|++|++|+..
T Consensus 298 ~~~~d~~i~~W~~d 311 (312)
T 4ery_A 298 ALENDKTIKLWKSD 311 (312)
T ss_dssp ECTTTCCEEEEECC
T ss_pred EccCCccEEEecCC
Confidence 7 69999999864
No 59
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-39 Score=301.07 Aligned_cols=290 Identities=14% Similarity=0.159 Sum_probs=210.9
Q ss_pred ecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCC
Q psy13076 42 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENP 121 (423)
Q Consensus 42 ~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 121 (423)
.++.|.++|++++|+|++++|++|+.|++|++||+.++..
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~---------------------------------------- 45 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW---------------------------------------- 45 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE----------------------------------------
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce----------------------------------------
Confidence 4556788999999999999999999999999999876410
Q ss_pred cccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCc-eeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCcee
Q psy13076 122 AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE-HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF 200 (423)
Q Consensus 122 ~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~ 200 (423)
+....+.+|...|.+++|+|++++|++++.|++|++||+.+.+ ......+.
T Consensus 46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~---------------------------- 97 (377)
T 3dwl_C 46 KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLL---------------------------- 97 (377)
T ss_dssp EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECC----------------------------
T ss_pred EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEec----------------------------
Confidence 1123456899999999999999999999999999999987654 11111122
Q ss_pred eEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce---eeeeccc-cccCeEEEEECCCCCE
Q psy13076 201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK---FKMTKQE-HSRFVQAVRYSPSGSH 276 (423)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~---~~~~~~~-~~~~i~~l~~s~~g~~ 276 (423)
.|...|.+++|+|++.. +++++.|+.|++|+..... ....+.. |...|.+++|+|++++
T Consensus 98 ----------------~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 160 (377)
T 3dwl_C 98 ----------------RLNRAATFVRWSPNEDK-FAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL 160 (377)
T ss_dssp ----------------CCSSCEEEEECCTTSSC-CEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred ----------------ccCCceEEEEECCCCCE-EEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence 23334555555554443 6778889999999876544 2444555 8899999999999999
Q ss_pred EEEEEecCeEEEEECCC------------------ccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076 277 FASAGFDGKVFLYDGAS------------------ADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK 338 (423)
Q Consensus 277 l~s~s~dg~i~vwd~~~------------------~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~ 338 (423)
|++++.|+.|++||+.. ++....+ .|...|.+++|+|++++|++++.|++|++||+.++
T Consensus 161 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 161 LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc---cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 99999999999999853 3333333 68899999999999999999999999999999998
Q ss_pred ce----eeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCC--------------------------------
Q psy13076 339 SA----VSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPS-------------------------------- 382 (423)
Q Consensus 339 ~~----i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~-------------------------------- 382 (423)
+. +..+.. +......+.+.++|.+|++++.++.+ +|+.....
T Consensus 238 ~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (377)
T 3dwl_C 238 EQPPRALITVKL-SQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPV 315 (377)
T ss_dssp TSCEEECCCEEC-SSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC----
T ss_pred CCcceeeEeecC-CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccc
Confidence 76 444432 22334566777899999888766666 55543111
Q ss_pred ------CceE-------------EeccCCCceeEEEecCCCC----eEEEecCCCcEEEeeC
Q psy13076 383 ------TPIR-------------VIKGHNKPITALALSPDRG----TVFTGSHDGFITRWNA 421 (423)
Q Consensus 383 ------~~~~-------------~~~~h~~~v~~i~~sp~~~----~l~s~s~D~~i~~W~~ 421 (423)
.... ....|...|+++++.+... .|+|+|.||.|++||+
T Consensus 316 ~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 316 SFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ---------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000 0123999999999876554 5999999999999985
No 60
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.1e-38 Score=291.85 Aligned_cols=318 Identities=18% Similarity=0.234 Sum_probs=234.9
Q ss_pred ceeecccccCceeEEEEeCCCCe-EEEecC---CCceEEeecCCcceeecccCCCCCCceEEeeCCC---CCeEEEe-cC
Q psy13076 39 PIRVIKGHNKPITALALSPDRGT-VFTGSH---DGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPK---GKNFLYT-NG 110 (423)
Q Consensus 39 ~~~~~~gh~~~V~~l~~~~~~~~-l~sg~~---D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~ 110 (423)
....+++|.++|.+++|+|+++. +++|+. |++|++||+++++........+......+.++|+ +..++.. .+
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 34567899999999999999864 556766 9999999999887654433334556667888887 5666654 47
Q ss_pred CeEEEEecCCCc-ccccccCCcceEEEEE------ECCCCCEEEEEccCCcEEEEEcCCCc-eeEEeeecC--CCCCeeE
Q psy13076 111 NSVIIRNIENPA-ISDIYTEHSCAVNVAK------YSPSGFYIASGDISGKVRIWDTVNKE-HILKNEFHP--IGGPIKD 180 (423)
Q Consensus 111 ~~~~i~~~~~~~-~~~~~~~h~~~i~~~~------~sp~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~--~~~~v~~ 180 (423)
..+.+|+++++. ....+.+|...|.+++ |+|+++++++++.|+.|++||+.+.+ .......+. ....+.+
T Consensus 90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 169 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWT 169 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEE
T ss_pred CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEE
Confidence 789999999887 8888999999999995 57899999999999999999998754 222111110 0112333
Q ss_pred EEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccc
Q psy13076 181 IAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE 260 (423)
Q Consensus 181 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~ 260 (423)
++|+ ++|+|++.+ +++++.|+.|++|+....+.. ....
T Consensus 170 ~~~~----------------------------------------~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~-~~~~ 207 (357)
T 3i2n_A 170 VAFG----------------------------------------NAYNQEERV-VCAGYDNGDIKLFDLRNMALR-WETN 207 (357)
T ss_dssp EEEE----------------------------------------CCCC-CCCE-EEEEETTSEEEEEETTTTEEE-EEEE
T ss_pred EEEE----------------------------------------eccCCCCCE-EEEEccCCeEEEEECccCcee-eecC
Confidence 3321 114555554 788899999999998876653 3356
Q ss_pred cccCeEEEEECC---CCCEEEEEEecCeEEEEECCCccceeccc---ccccCCCeEEEEECCCCC-eEEEEeCCCcEEEE
Q psy13076 261 HSRFVQAVRYSP---SGSHFASAGFDGKVFLYDGASADLVSELG---NPAHKGGVYAVAWKPDGT-QLLTASGDKTCKLW 333 (423)
Q Consensus 261 ~~~~i~~l~~s~---~g~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~~~i~~l~~~~~~~-~l~s~s~d~~i~iw 333 (423)
|...+.+++|+| ++.++++++.||.|++||.++++....+. ...|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 208 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 287 (357)
T 3i2n_A 208 IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLW 287 (357)
T ss_dssp CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEe
Confidence 778899999999 99999999999999999998876554432 126889999999999998 89999999999999
Q ss_pred ecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEE-EecC
Q psy13076 334 DIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVF-TGSH 412 (423)
Q Consensus 334 d~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~-s~s~ 412 (423)
|++........... |... ...+. ...+..+.+|..+|++++|+|++++|+ |++.
T Consensus 288 d~~~~~~~~~~~~~-------------g~~~---~~~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~ 342 (357)
T 3i2n_A 288 KYEYPIQRSKKDSE-------------GIEM---GVAGS---------VSLLQNVTLSTQPISSLDWSPDKRGLCVCSSF 342 (357)
T ss_dssp EEECCSCC--CCTT-------------SCCC---CCCCE---------EEEEEEEECCSSCEEEEEECSSSTTEEEEEET
T ss_pred ecCCCcccccccCC-------------CCcc---ccccc---------cceeeccccCCCCeeEEEEcCCCCeEEEEecC
Confidence 99876543221110 0000 00000 123456789999999999999999998 8999
Q ss_pred CCcEEEeeCCC
Q psy13076 413 DGFITRWNAKT 423 (423)
Q Consensus 413 D~~i~~W~~~~ 423 (423)
|+.|++||+.+
T Consensus 343 d~~i~iw~~~~ 353 (357)
T 3i2n_A 343 DQTVRVLIVTK 353 (357)
T ss_dssp TSEEEEEEECC
T ss_pred CCcEEEEECCC
Confidence 99999999864
No 61
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.7e-38 Score=291.48 Aligned_cols=296 Identities=16% Similarity=0.240 Sum_probs=226.6
Q ss_pred ecccccCceeEEEEeCC----CCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEe
Q psy13076 42 VIKGHNKPITALALSPD----RGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRN 117 (423)
Q Consensus 42 ~~~gh~~~V~~l~~~~~----~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 117 (423)
..++|.++|++++|+|+ ...+++++.++.|++||..++..+..+...
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~----------------------------- 63 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSY----------------------------- 63 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEE-----------------------------
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeec-----------------------------
Confidence 44589999999999984 556777777889999999876543322110
Q ss_pred cCCCcccccccCCcceEEEEEECCC----CCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEE
Q psy13076 118 IENPAISDIYTEHSCAVNVAKYSPS----GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV 193 (423)
Q Consensus 118 ~~~~~~~~~~~~h~~~i~~~~~sp~----~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~ 193 (423)
....|...|.+++|+|+ +.++++++.|+.|++||+.+.+.... +..+..+|.+++|+|+
T Consensus 64 --------~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~--~~~~~~~i~~~~~~~~------- 126 (366)
T 3k26_A 64 --------VDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKH--YVGHGNAINELKFHPR------- 126 (366)
T ss_dssp --------ECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEE--EESCCSCEEEEEECSS-------
T ss_pred --------cccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeee--ecCCCCcEEEEEECCC-------
Confidence 01236778999999998 67999999999999999987654322 2233445555555551
Q ss_pred EcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeec---cccccCeEEEEE
Q psy13076 194 GEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK---QEHSRFVQAVRY 270 (423)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~---~~~~~~i~~l~~ 270 (423)
++. .+++++.|+.|++|+....+..... ..|...|.+++|
T Consensus 127 ------------------------------------~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 127 ------------------------------------DPN-LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp ------------------------------------CTT-EEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred ------------------------------------CCC-EEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 222 3778889999999998877766665 678999999999
Q ss_pred CCCCCEEEEEEecCeEEEEECCCccceecccc--------------------------cccCCCeEEEEECCCCCeEEEE
Q psy13076 271 SPSGSHFASAGFDGKVFLYDGASADLVSELGN--------------------------PAHKGGVYAVAWKPDGTQLLTA 324 (423)
Q Consensus 271 s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~--------------------------~~~~~~i~~l~~~~~~~~l~s~ 324 (423)
+|++++|++++.||.|++||.++++....+.. ..|...|.+++|+ +++|+++
T Consensus 170 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~ 247 (366)
T 3k26_A 170 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSK 247 (366)
T ss_dssp CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEE
T ss_pred CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEE
Confidence 99999999999999999999988765433321 1288899999998 7799999
Q ss_pred eCCCcEEEEecCCcce--------------eeeeeeCceeEeeEEEEEec--CcEEEEEeCCCcEEEEecCCCCC---ce
Q psy13076 325 SGDKTCKLWDIETKSA--------------VSEFLMGNQVEDQQVSCLWQ--GDYLLTVSLSGFISYLDVNNPST---PI 385 (423)
Q Consensus 325 s~d~~i~iwd~~~~~~--------------i~~~~~~~~~~~~~~~~~~~--g~~l~~~~~~~~i~~~~~~~~~~---~~ 385 (423)
+.|+.|++||+.+... +..+.. +......+.+.++ |.+|++++.+|.|++||+.+... ..
T Consensus 248 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 326 (366)
T 3k26_A 248 SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY-SQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKC 326 (366)
T ss_dssp CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC-SSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEE
T ss_pred ecCCEEEEEeCCCccccccccccCCcchheeccccc-cCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccc
Confidence 9999999999987654 222221 1122333455667 99999999999999999987542 34
Q ss_pred EEeccC--CCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076 386 RVIKGH--NKPITALALSPDRGTVFTGSHDGFITRWNAKT 423 (423)
Q Consensus 386 ~~~~~h--~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~ 423 (423)
..+.+| ..+|++++|+|++++|++++.||.|++||+.+
T Consensus 327 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 327 TTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred eEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 467777 79999999999999999999999999999875
No 62
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.5e-39 Score=292.36 Aligned_cols=256 Identities=20% Similarity=0.274 Sum_probs=192.8
Q ss_pred ecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCC
Q psy13076 42 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENP 121 (423)
Q Consensus 42 ~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 121 (423)
++.+|.++|++++|+|++++|+||+.|++|++||++++...
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~--------------------------------------- 48 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI--------------------------------------- 48 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE---------------------------------------
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE---------------------------------------
Confidence 57899999999999999999999999999999998754210
Q ss_pred cccccccCCcceEEEEEECC--CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCce
Q psy13076 122 AISDIYTEHSCAVNVAKYSP--SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRER 199 (423)
Q Consensus 122 ~~~~~~~~h~~~i~~~~~sp--~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~ 199 (423)
....+.+|...|++++|+| ++++|+|++.|++|++||+++++......+..+..+|.+++|+|++.
T Consensus 49 -~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~----------- 116 (316)
T 3bg1_A 49 -LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDY----------- 116 (316)
T ss_dssp -EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTT-----------
T ss_pred -EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCC-----------
Confidence 1123568999999999986 48999999999999999987653222223333445555555555421
Q ss_pred eeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc---eeeeeccccccCeEEEEECCC---
Q psy13076 200 FGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF---KFKMTKQEHSRFVQAVRYSPS--- 273 (423)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~---~~~~~~~~~~~~i~~l~~s~~--- 273 (423)
+ ..+++++.|++|++|+.... ........|...+.+++|+|+
T Consensus 117 -------------------------------g-~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 117 -------------------------------G-LILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp -------------------------------C-SCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred -------------------------------C-cEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 1 23788899999999986543 223455678888999999997
Q ss_pred --------------CCEEEEEEecCeEEEEECCCcc---ceecccccccCCCeEEEEECCCC----CeEEEEeCCCcEEE
Q psy13076 274 --------------GSHFASAGFDGKVFLYDGASAD---LVSELGNPAHKGGVYAVAWKPDG----TQLLTASGDKTCKL 332 (423)
Q Consensus 274 --------------g~~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~i~~l~~~~~~----~~l~s~s~d~~i~i 332 (423)
+++|++|+.|+.|++||.+... ....+ .+|...|.+++|+|++ ++|++++.|++|++
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l--~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL--EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC--BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec--ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence 4789999999999999987542 33444 4699999999999986 88999999999999
Q ss_pred EecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecC
Q psy13076 333 WDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSH 412 (423)
Q Consensus 333 wd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~ 412 (423)
||+.+...- ......+.+|..+|++++|+|++++|++++.
T Consensus 243 w~~~~~~~~----------------------------------------~~~~~~~~~~~~~v~~v~~sp~g~~las~~~ 282 (316)
T 3bg1_A 243 WTCDDASSN----------------------------------------TWSPKLLHKFNDVVWHVSWSITANILAVSGG 282 (316)
T ss_dssp EECSSTTCC----------------------------------------CCBCCEEEECSSCEEEEEECTTTCCEEEEES
T ss_pred EEccCcccc----------------------------------------chhhhhhhcCCCcEEEEEEcCCCCEEEEEcC
Confidence 998763210 0001123568899999999999999999999
Q ss_pred CCcEEEeeCC
Q psy13076 413 DGFITRWNAK 422 (423)
Q Consensus 413 D~~i~~W~~~ 422 (423)
|++|++|+..
T Consensus 283 D~~v~lw~~~ 292 (316)
T 3bg1_A 283 DNKVTLWKES 292 (316)
T ss_dssp SSCEEEEEEC
T ss_pred CCeEEEEEEC
Confidence 9999999864
No 63
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-37 Score=281.01 Aligned_cols=292 Identities=17% Similarity=0.257 Sum_probs=235.4
Q ss_pred eccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCC
Q psy13076 32 DVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGN 111 (423)
Q Consensus 32 d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (423)
|..++.++..++++|.++|++++| |++++|++|+.||.|++||++++....
T Consensus 3 d~~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---------------------------- 53 (313)
T 3odt_A 3 DPFTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---------------------------- 53 (313)
T ss_dssp --CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE----------------------------
T ss_pred CccccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE----------------------------
Confidence 444556778899999999999999 999999999999999999987654322
Q ss_pred eEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCce-eEEeeecCCCCCeeEEEECCCCCeE
Q psy13076 112 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH-ILKNEFHPIGGPIKDIAWSPDNQRM 190 (423)
Q Consensus 112 ~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~~ 190 (423)
.+..|...|.+++|+|+++++++++.|+.|++|++..... .....+..+..+|.+++| ++..+
T Consensus 54 --------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l 117 (313)
T 3odt_A 54 --------------VVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVV 117 (313)
T ss_dssp --------------EEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEE
T ss_pred --------------EeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEE
Confidence 2345778899999999999999999999999999876431 112334556788999999 56677
Q ss_pred EEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccc-cccCeEEEE
Q psy13076 191 VVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE-HSRFVQAVR 269 (423)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~-~~~~i~~l~ 269 (423)
++++.+. ...+|+ .+.....+..+..++.++.+.|.....+++++.|+.+++|+.. +....... +...+.+++
T Consensus 118 ~~~~~d~--~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~ 191 (313)
T 3odt_A 118 ISGSWDK--TAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLA 191 (313)
T ss_dssp EEEETTS--EEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEEE
T ss_pred EEEeCCC--CEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEEE
Confidence 7766543 344554 6677777888999999999999444468999999999999943 33334444 888999999
Q ss_pred ECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCce
Q psy13076 270 YSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQ 349 (423)
Q Consensus 270 ~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~ 349 (423)
|+|++. +++++.||.|++||.++++.+..+. .|...|.+++|+|++ .|++++.|+.|++||+.+++.+
T Consensus 192 ~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~-------- 259 (313)
T 3odt_A 192 VVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE--GHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLK-------- 259 (313)
T ss_dssp EEETTE-EEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEE--------
T ss_pred EcCCCe-EEEccCCCeEEEEECCchhhhhhhh--cCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCcee--------
Confidence 999998 9999999999999999998877764 588999999999999 6899999999999999876532
Q ss_pred eEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076 350 VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423 (423)
Q Consensus 350 ~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~ 423 (423)
..+..|..+|++++|+|+++ +++++.||.|++||+++
T Consensus 260 ------------------------------------~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 260 ------------------------------------QVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp ------------------------------------EEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCG
T ss_pred ------------------------------------EEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCC
Confidence 23456778899999999998 66799999999999763
No 64
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.3e-37 Score=284.15 Aligned_cols=285 Identities=19% Similarity=0.326 Sum_probs=227.6
Q ss_pred eeEEEEe-CCEEEEEeccceEEEEeccCCCC----ceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceee
Q psy13076 9 QVSCLWQ-GDYLLTVSLSGFISYLDVNNPST----PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFA 83 (423)
Q Consensus 9 ~~~~~~~-~~~~~~~~~dg~i~~~d~~~~~~----~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~ 83 (423)
+|+++|+ +++||+||.||.|++||+..... +..++++|.++|.+++|+|++++|++|+.|+.|++|+........
T Consensus 43 ~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~ 122 (340)
T 4aow_A 43 QIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTR 122 (340)
T ss_dssp EEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred EEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceee
Confidence 3455555 78999999999999999875332 456789999999999999999999999999999999987654322
Q ss_pred cccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCC
Q psy13076 84 TLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK 163 (423)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~ 163 (423)
. ...+...+....++|++.++++++.|+.+++||....
T Consensus 123 ~------------------------------------------~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~ 160 (340)
T 4aow_A 123 R------------------------------------------FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV 160 (340)
T ss_dssp E------------------------------------------EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC
T ss_pred e------------------------------------------ecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCC
Confidence 1 1234456777889999999999999999999998654
Q ss_pred ceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCe
Q psy13076 164 EHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNT 243 (423)
Q Consensus 164 ~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~ 243 (423)
... ......+...+..++|++++...+.++.+.+....+|+...+..+..+.+|..+|.+++|+|++.+ +++++.|+.
T Consensus 161 ~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~Dg~ 238 (340)
T 4aow_A 161 CKY-TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL-CASGGKDGQ 238 (340)
T ss_dssp EEE-EECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-EEEEETTCE
T ss_pred ceE-EEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCE-EEEEeCCCe
Confidence 432 233445667899999999875544443344455678888888888888999999999999999875 899999999
Q ss_pred EEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccc-------ccccCCCeEEEEECC
Q psy13076 244 IAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG-------NPAHKGGVYAVAWKP 316 (423)
Q Consensus 244 i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~-------~~~~~~~i~~l~~~~ 316 (423)
|++||....+....... ...+.+++|+|++.+ ++++.|+.|++||.+++..+..+. ..+|...|++++|+|
T Consensus 239 i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 316 (340)
T 4aow_A 239 AMLWDLNEGKHLYTLDG-GDIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA 316 (340)
T ss_dssp EEEEETTTTEEEEEEEC-SSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT
T ss_pred EEEEEeccCceeeeecC-CceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC
Confidence 99999887776655544 457999999998754 556789999999998876554432 236888999999999
Q ss_pred CCCeEEEEeCCCcEEEEecCCcc
Q psy13076 317 DGTQLLTASGDKTCKLWDIETKS 339 (423)
Q Consensus 317 ~~~~l~s~s~d~~i~iwd~~~~~ 339 (423)
+|++|++|+.|++|+|||+++|+
T Consensus 317 dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 317 DGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp TSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999999999999999998874
No 65
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-37 Score=291.55 Aligned_cols=280 Identities=18% Similarity=0.339 Sum_probs=224.5
Q ss_pred eeeEEEEeCCEEEEEeccceEEEEeccCCCCceeeccc-ccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeeccc
Q psy13076 8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKG-HNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLP 86 (423)
Q Consensus 8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~g-h~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~ 86 (423)
+..++.|++..+++++.||.|++||+.++ +....+.. |.++|.+++|+|++++|++|+.||.|++||+++++...
T Consensus 95 ~~~~~~~s~~~l~~~~~d~~v~lw~~~~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--- 170 (401)
T 4aez_A 95 YLNLLDWSNLNVVAVALERNVYVWNADSG-SVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR--- 170 (401)
T ss_dssp TCBCEEECTTSEEEEEETTEEEEEETTTC-CEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---
T ss_pred eEEEEeecCCCEEEEECCCeEEEeeCCCC-cEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEE---
Confidence 45568898899999999999999999864 44445554 89999999999999999999999999999998754332
Q ss_pred CCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCcee
Q psy13076 87 RTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 166 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~ 166 (423)
.+.+|...|.++.| ++.++++++.|+.|++||+......
T Consensus 171 ---------------------------------------~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 209 (401)
T 4aez_A 171 ---------------------------------------TMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ 209 (401)
T ss_dssp ---------------------------------------EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE
T ss_pred ---------------------------------------EecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcce
Confidence 23468889999999 5679999999999999999743322
Q ss_pred EEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEE
Q psy13076 167 LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAV 246 (423)
Q Consensus 167 ~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~ 246 (423)
. ..+..+.+.|.+++|+|++ . .+++++.|+.|++
T Consensus 210 ~-~~~~~~~~~v~~~~~~~~~--------------------------------------------~-~l~s~~~d~~v~i 243 (401)
T 4aez_A 210 I-GTLQGHSSEVCGLAWRSDG--------------------------------------------L-QLASGGNDNVVQI 243 (401)
T ss_dssp E-EEEECCSSCEEEEEECTTS--------------------------------------------S-EEEEEETTSCEEE
T ss_pred e-eEEcCCCCCeeEEEEcCCC--------------------------------------------C-EEEEEeCCCeEEE
Confidence 1 1222334445555555543 3 2677889999999
Q ss_pred EcCCCceeeeeccccccCeEEEEECCCCC-EEEEEE--ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEE
Q psy13076 247 FEGPPFKFKMTKQEHSRFVQAVRYSPSGS-HFASAG--FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLT 323 (423)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s 323 (423)
||............|...|.+++|+|++. ++++++ .|+.|++||..+++....+. +...+.+++|+|++++|++
T Consensus 244 wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~ 320 (401)
T 4aez_A 244 WDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD---AGSQVTSLIWSPHSKEIMS 320 (401)
T ss_dssp EETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE---CSSCEEEEEECSSSSEEEE
T ss_pred ccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe---CCCcEEEEEECCCCCeEEE
Confidence 99887777777788999999999999875 556654 79999999999998877763 5678999999999999999
Q ss_pred Ee--CCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEec
Q psy13076 324 AS--GDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALS 401 (423)
Q Consensus 324 ~s--~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~s 401 (423)
++ .|+.|++||+.+++... ...+.+|..+|++++|+
T Consensus 321 ~~g~~dg~i~v~~~~~~~~~~------------------------------------------~~~~~~h~~~v~~~~~s 358 (401)
T 4aez_A 321 THGFPDNNLSIWSYSSSGLTK------------------------------------------QVDIPAHDTRVLYSALS 358 (401)
T ss_dssp EECTTTCEEEEEEEETTEEEE------------------------------------------EEEEECCSSCCCEEEEC
T ss_pred EeecCCCcEEEEecCCcccee------------------------------------------EEEecCCCCCEEEEEEC
Confidence 54 89999999987654221 12356899999999999
Q ss_pred CCCCeEEEecCCCcEEEeeCCC
Q psy13076 402 PDRGTVFTGSHDGFITRWNAKT 423 (423)
Q Consensus 402 p~~~~l~s~s~D~~i~~W~~~~ 423 (423)
|++++|++++.||.|++|++.+
T Consensus 359 ~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 359 PDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp TTSSEEEEECTTSEEEEEECCC
T ss_pred CCCCEEEEEeCCCcEEEEECCC
Confidence 9999999999999999999864
No 66
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=8.1e-38 Score=282.10 Aligned_cols=257 Identities=18% Similarity=0.279 Sum_probs=199.1
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccCC-CCceeecccccCceeEEEEeCC--CCeEEEecCCCceEEeecCCcceeecc
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNNP-STPIRVIKGHNKPITALALSPD--RGTVFTGSHDGFITRWNAKTEYIFATL 85 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~-~~~~~~~~gh~~~V~~l~~~~~--~~~l~sg~~D~~i~vW~~~~~~~~~~~ 85 (423)
.+++++||++||+|+.||.|++||+... .+++.+|++|.++|.+++|+++ +++|+||+.|++|++||++++...
T Consensus 14 ~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~--- 90 (297)
T 2pm7_B 14 DAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWS--- 90 (297)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBC---
T ss_pred EEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceE---
Confidence 4677789999999999999999999743 3567899999999999999863 889999999999999998764210
Q ss_pred cCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCC--CCEEEEEccCCcEEEEEcCCC
Q psy13076 86 PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS--GFYIASGDISGKVRIWDTVNK 163 (423)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~~~d~~i~vwd~~~~ 163 (423)
....+.+|...|.+++|+|+ +.+|++++.|++|++||+.+.
T Consensus 91 -------------------------------------~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~ 133 (297)
T 2pm7_B 91 -------------------------------------QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN 133 (297)
T ss_dssp -------------------------------------CCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred -------------------------------------EEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC
Confidence 11134578899999999997 899999999999999999765
Q ss_pred ceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCe
Q psy13076 164 EHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNT 243 (423)
Q Consensus 164 ~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~ 243 (423)
.......+..+...|.+++|+|++..-... + ..+.....+++|+.|++
T Consensus 134 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~------------------------~--------~~~~~~~~l~sgs~D~~ 181 (297)
T 2pm7_B 134 GTTSPIIIDAHAIGVNSASWAPATIEEDGE------------------------H--------NGTKESRKFVTGGADNL 181 (297)
T ss_dssp SCBCCEEEECCSSCEEEEEECCCC--------------------------------------------CCEEEEEETTSC
T ss_pred CceeeeeeecccCccceEeecCCccccccc------------------------C--------CCCCCcceEEEEcCCCc
Confidence 322123344566789999999975321000 0 00111235899999999
Q ss_pred EEEEcCCCce----eeeeccccccCeEEEEECCCC---CEEEEEEecCeEEEEECCCccc---eecccccccCCCeEEEE
Q psy13076 244 IAVFEGPPFK----FKMTKQEHSRFVQAVRYSPSG---SHFASAGFDGKVFLYDGASADL---VSELGNPAHKGGVYAVA 313 (423)
Q Consensus 244 i~~~~~~~~~----~~~~~~~~~~~i~~l~~s~~g---~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~~~i~~l~ 313 (423)
|++|+..... ....+..|...|.+++|+|++ ++|++++.|+.|++||..+... ...+....|...|.+++
T Consensus 182 v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~ 261 (297)
T 2pm7_B 182 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS 261 (297)
T ss_dssp EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEE
T ss_pred EEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEE
Confidence 9999865432 455678899999999999995 7999999999999999876431 11222235788899999
Q ss_pred ECCCCCeEEEEeCCCcEEEEecCC
Q psy13076 314 WKPDGTQLLTASGDKTCKLWDIET 337 (423)
Q Consensus 314 ~~~~~~~l~s~s~d~~i~iwd~~~ 337 (423)
|+|++++|++++.|++|++|+...
T Consensus 262 ~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 262 WSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp ECSSSCCEEEEETTSCEEEEEECT
T ss_pred ECCCCCEEEEEcCCCcEEEEEECC
Confidence 999999999999999999999763
No 67
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.8e-36 Score=284.70 Aligned_cols=279 Identities=21% Similarity=0.325 Sum_probs=216.4
Q ss_pred eeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccC
Q psy13076 50 ITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTE 129 (423)
Q Consensus 50 V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 129 (423)
++.|+||++ .+|++| .|++|++||.+++++...+ .+.+
T Consensus 108 ~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~~~~----------------------------------------~~~~ 145 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVA-LDNSVYLWSASSGDILQLL----------------------------------------QMEQ 145 (420)
T ss_dssp CBCEEECTT-SEEEEE-ETTEEEEEETTTCCEEEEE----------------------------------------ECCS
T ss_pred ceeEEECCC-CEEEEE-eCCEEEEEECCCCCEEEEE----------------------------------------EecC
Confidence 677899875 456555 5899999998887654322 1235
Q ss_pred CcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCC
Q psy13076 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG 209 (423)
Q Consensus 130 h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (423)
|...|++++|+|+|++||+|+.|++|++||+++++.+.. +..+...+
T Consensus 146 ~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~--~~~h~~~v------------------------------- 192 (420)
T 4gga_A 146 PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN--MTSHSARV------------------------------- 192 (420)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCE-------------------------------
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE--EeCCCCce-------------------------------
Confidence 778899999999999999999999999999987664432 22222333
Q ss_pred cceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC-ceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEE
Q psy13076 210 TSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP-FKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL 288 (423)
Q Consensus 210 ~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~-~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~v 288 (423)
.++.+++ ..+++++.|+.+.+|+... ......+..|...+..+.++|+|+++++++.|+.+++
T Consensus 193 -------------~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i 256 (420)
T 4gga_A 193 -------------GSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 256 (420)
T ss_dssp -------------EEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred -------------EEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceE
Confidence 3333332 2478899999999998654 3344566788999999999999999999999999999
Q ss_pred EECCCccceec--ccccccCCCeEEEEECCCCC-eEEE--EeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcE
Q psy13076 289 YDGASADLVSE--LGNPAHKGGVYAVAWKPDGT-QLLT--ASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDY 363 (423)
Q Consensus 289 wd~~~~~~~~~--~~~~~~~~~i~~l~~~~~~~-~l~s--~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~ 363 (423)
|+..+++.... .....|...|.+++|+|.+. .+++ |+.|++|++||+.+++++..+...... ......+++..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v--~~~~~~~~~~~ 334 (420)
T 4gga_A 257 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV--CSILWSPHYKE 334 (420)
T ss_dssp EESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCE--EEEEEETTTTE
T ss_pred EeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccce--eeeeecCCCCe
Confidence 99987653221 11235888999999999765 4444 457999999999999988777654433 34445568888
Q ss_pred EEEEe--CCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076 364 LLTVS--LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 422 (423)
Q Consensus 364 l~~~~--~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~ 422 (423)
+++++ .++.|++||..+. .++..+.||..+|++++|+||+++|+|||.|++|++||+.
T Consensus 335 lv~~sg~~d~~I~iwd~~~~-~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 335 LISGHGFAQNQLVIWKYPTM-AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 394 (420)
T ss_dssp EEEEECTTTCCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred EEEEEecCCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 87765 6899999999875 4578899999999999999999999999999999999974
No 68
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.5e-37 Score=294.06 Aligned_cols=284 Identities=12% Similarity=0.126 Sum_probs=224.8
Q ss_pred CceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccc
Q psy13076 48 KPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIY 127 (423)
Q Consensus 48 ~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 127 (423)
..+++++|+|++++|++|+.|+.|++||+.++.... .+
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~------------------------------------------~~ 94 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK------------------------------------------ML 94 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT------------------------------------------TS
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee------------------------------------------EE
Confidence 445689999999999999999999999987753321 12
Q ss_pred cCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec
Q psy13076 128 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE 207 (423)
Q Consensus 128 ~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~ 207 (423)
..| ..+....|+|++++|++++.|+.|++||+.+.+... .+..+..+|.+++|+|+++
T Consensus 95 ~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~------------------- 152 (420)
T 3vl1_A 95 KRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE--IDQAHVSEITKLKFFPSGE------------------- 152 (420)
T ss_dssp CSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE--ETTSSSSCEEEEEECTTSS-------------------
T ss_pred ecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee--ecccccCccEEEEECCCCC-------------------
Confidence 233 344555789999999999999999999987654322 2233445555565555543
Q ss_pred CCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEE
Q psy13076 208 TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVF 287 (423)
Q Consensus 208 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~ 287 (423)
.+++++.|+.|++|+....+....+..|...|.+++|+|++++|++++.||.|+
T Consensus 153 --------------------------~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~ 206 (420)
T 3vl1_A 153 --------------------------ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR 206 (420)
T ss_dssp --------------------------EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred --------------------------EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence 267788999999999887777777788999999999999999999999999999
Q ss_pred EEECCCccceeccccc-ccCCCe---------------------EEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeee
Q psy13076 288 LYDGASADLVSELGNP-AHKGGV---------------------YAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFL 345 (423)
Q Consensus 288 vwd~~~~~~~~~~~~~-~~~~~i---------------------~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~ 345 (423)
+||.++++....+... .|...+ .+++|+|++++|++++.|+.|++||+++++.+..+.
T Consensus 207 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 286 (420)
T 3vl1_A 207 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP 286 (420)
T ss_dssp EEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc
Confidence 9999998877665421 233344 445568899999999999999999999998877775
Q ss_pred eCceeEeeEEEEEecCc-EEEEEeCCCcEEEEecCCCCCceEEecc-CCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076 346 MGNQVEDQQVSCLWQGD-YLLTVSLSGFISYLDVNNPSTPIRVIKG-HNKPITALALSPDRGTVFTGSHDGFITRWNAK 422 (423)
Q Consensus 346 ~~~~~~~~~~~~~~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~~~-h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~ 422 (423)
..+......+.+.+++. ++++++.+|.|++||+++...++..+.+ |..+|+++.| |++++|++++.|+.|++|++.
T Consensus 287 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~ 364 (420)
T 3vl1_A 287 SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIIS 364 (420)
T ss_dssp CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEEC
T ss_pred cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEecc
Confidence 55445556677778888 9999999999999999988776777776 6777888854 578899999999999999965
No 69
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.1e-37 Score=284.43 Aligned_cols=286 Identities=17% Similarity=0.178 Sum_probs=233.1
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccCCC-CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNNPS-TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR 87 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~-~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~ 87 (423)
++++++||++|++++.||.|++||+.+.. +++..+.+|.++|.+++|+|++++|++++.|+.|++||+++++....+
T Consensus 13 ~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-- 90 (372)
T 1k8k_C 13 CHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL-- 90 (372)
T ss_dssp EEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE--
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeE--
Confidence 45566699999999999999999997532 167789999999999999999999999999999999999765432111
Q ss_pred CCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCcee-
Q psy13076 88 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI- 166 (423)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~- 166 (423)
.+.+|...|.+++|+|+++++++++.|+.|++||+...+..
T Consensus 91 --------------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~ 132 (372)
T 1k8k_C 91 --------------------------------------VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW 132 (372)
T ss_dssp --------------------------------------ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE
T ss_pred --------------------------------------EeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcce
Confidence 12457888999999999999999999999999999876532
Q ss_pred -EEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEee------------------cCCcceecccCCCcceeEEEE
Q psy13076 167 -LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMS------------------ETGTSVGEISGQSKPINSCDF 227 (423)
Q Consensus 167 -~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~i~~~~~ 227 (423)
.......+...|.+++|+|+++.+++++.+. ...+|+. ..+..+..+..|...+.++.|
T Consensus 133 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 210 (372)
T 1k8k_C 133 VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF--KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF 210 (372)
T ss_dssp EEEEECTTCCSCEEEEEECTTSSEEEEEETTS--CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEE
T ss_pred eeeeeecccCCCeeEEEEcCCCCEEEEEcCCC--CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEE
Confidence 2222344568899999999999888876543 3466763 245666777788899999999
Q ss_pred ecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCC--ccc--e------
Q psy13076 228 KPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGAS--ADL--V------ 297 (423)
Q Consensus 228 ~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~--~~~--~------ 297 (423)
+|++.+ +++++.|+.|++|+....+....+..|...+.+++|+|+++++++| .|+.|++|+..+ ++. .
T Consensus 211 ~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~ 288 (372)
T 1k8k_C 211 SANGSR-VAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVP 288 (372)
T ss_dssp CSSSSE-EEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC
T ss_pred CCCCCE-EEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCcc
Confidence 999875 8899999999999987777777778888899999999999988887 999999999877 320 0
Q ss_pred ------------------------------ecccccccCCCeEEEEEC-CCC---CeEEEEeCCCcEEEEecCCcc
Q psy13076 298 ------------------------------SELGNPAHKGGVYAVAWK-PDG---TQLLTASGDKTCKLWDIETKS 339 (423)
Q Consensus 298 ------------------------------~~~~~~~~~~~i~~l~~~-~~~---~~l~s~s~d~~i~iwd~~~~~ 339 (423)
..+ ..+|...|.+++|+ ++| ++|++++.|++|++||+.+++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 289 KQSSQRGLTARERFQNLDKKASSEGSAAAGAGL-DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp --------CHHHHHHHCCCCC---------CCC-SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccchhhhcchhhhhhhcccccccccCccccccc-cccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 111 13789999999976 676 999999999999999997754
No 70
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.6e-37 Score=293.05 Aligned_cols=351 Identities=13% Similarity=0.137 Sum_probs=225.2
Q ss_pred eEEEEeCCEEEEEeccceEEEEeccCCCC----------ceeeccccc------------CceeEEEEeCCC--CeEEEe
Q psy13076 10 VSCLWQGDYLLTVSLSGFISYLDVNNPST----------PIRVIKGHN------------KPITALALSPDR--GTVFTG 65 (423)
Q Consensus 10 ~~~~~~~~~~~~~~~dg~i~~~d~~~~~~----------~~~~~~gh~------------~~V~~l~~~~~~--~~l~sg 65 (423)
+++++||.+||+|+.||.|++||+.+... +...+++|. ++|++++|+|++ .+|+++
T Consensus 34 v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~ 113 (447)
T 3dw8_B 34 VEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLS 113 (447)
T ss_dssp EEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEe
Confidence 44445999999999999999999976442 466889998 889999999998 789999
Q ss_pred cCCCceEEeecCCcceeecccCCCCCCceEEe-eCCCCCe---EEEecCCeEEEEecCCCcccccccCCcceEEEEEECC
Q psy13076 66 SHDGFITRWNAKTEYIFATLPRTQRGQPIVLG-GDPKGKN---FLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSP 141 (423)
Q Consensus 66 ~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp 141 (423)
+.|++|++||+.++.......... .....+. ....... .+...+ +............+|...|.+++|+|
T Consensus 114 s~d~~i~iw~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~h~~~v~~~~~~~ 187 (447)
T 3dw8_B 114 TNDKTIKLWKISERDKRPEGYNLK-EEDGRYRDPTTVTTLRVPVFRPMD-----LMVEASPRRIFANAHTYHINSISINS 187 (447)
T ss_dssp ECSSCEEEEEEEEEEEEEECCSCC---------CCCCCSCCCCEEEEEE-----EEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred CCCCeEEEEecccccCCcceeccc-CccccccCcccccceEeccccchh-----eeeeccceEEeccCCCcceEEEEEcC
Confidence 999999999998754422111000 0000000 0000000 000000 00000001122368999999999999
Q ss_pred CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcc
Q psy13076 142 SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKP 221 (423)
Q Consensus 142 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (423)
++++|++| .|++|++||+.+........ ... ...+..|...
T Consensus 188 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~-----------~~~---------------------------~~~~~~~~~~ 228 (447)
T 3dw8_B 188 DYETYLSA-DDLRINLWHLEITDRSFNIV-----------DIK---------------------------PANMEELTEV 228 (447)
T ss_dssp TSSEEEEE-CSSEEEEEETTEEEEEEEEE-----------ECC---------------------------CSSGGGCCCC
T ss_pred CCCEEEEe-CCCeEEEEECCCCCceeeee-----------ecc---------------------------cccccccCcc
Confidence 99999999 79999999986432211100 000 0123456667
Q ss_pred eeEEEEecCCCeeEEEEeCCCeEEEEcCCCcee----eeecccccc------------CeEEEEECCCCCEEEEEEecCe
Q psy13076 222 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF----KMTKQEHSR------------FVQAVRYSPSGSHFASAGFDGK 285 (423)
Q Consensus 222 i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~----~~~~~~~~~------------~i~~l~~s~~g~~l~s~s~dg~ 285 (423)
|.+++|+|++...+++++.|+.|++||...... ...+..|.. .|.+++|+|+|++|++++. +.
T Consensus 229 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~ 307 (447)
T 3dw8_B 229 ITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS 307 (447)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE
T ss_pred eEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce
Confidence 778888887744588999999999999776553 344555554 8999999999999999998 99
Q ss_pred EEEEECCC-ccceecccccccCCC---------------eEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCce
Q psy13076 286 VFLYDGAS-ADLVSELGNPAHKGG---------------VYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQ 349 (423)
Q Consensus 286 i~vwd~~~-~~~~~~~~~~~~~~~---------------i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~ 349 (423)
|++||+++ ++.+..+. .|... +..++|+|++++|++++.|+.|++||+.+++.+.-......
T Consensus 308 v~iwd~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~ 385 (447)
T 3dw8_B 308 VKVWDLNMENRPVETYQ--VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASREN 385 (447)
T ss_dssp EEEEETTCCSSCSCCEE--SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTT
T ss_pred EEEEeCCCCccccceee--ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccc
Confidence 99999987 66666553 34321 33499999999999999999999999999876532111110
Q ss_pred eEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076 350 VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA 421 (423)
Q Consensus 350 ~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~ 421 (423)
...... . ....+..+.. +...........+...|+.++|+|++++|++++.|+ +++|..
T Consensus 386 ~~~~~~--~-~~~~~~~~~~---------~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 386 NKPRTV--L-KPRKVCASGK---------RKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CCTTCB--C-CCCCEECSSC---------CCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cccccc--c-CCccccccCC---------cccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 000000 0 0011111100 000010001224677899999999999999998876 777764
No 71
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=269.40 Aligned_cols=293 Identities=20% Similarity=0.306 Sum_probs=221.1
Q ss_pred CCCceeeccc--ccC--ceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCC
Q psy13076 36 PSTPIRVIKG--HNK--PITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGN 111 (423)
Q Consensus 36 ~~~~~~~~~g--h~~--~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (423)
|..|.++|.+ ..+ ..++|+||+++ +|++| .|++|++||+++++++..+.
T Consensus 10 p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~------------------------- 62 (318)
T 4ggc_A 10 PSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQ------------------------- 62 (318)
T ss_dssp CSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEE-------------------------
T ss_pred CCCCCEEeeCCCCcccccceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEE-------------------------
Confidence 4455555543 222 35789999975 66655 69999999999876654331
Q ss_pred eEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEE
Q psy13076 112 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMV 191 (423)
Q Consensus 112 ~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~ 191 (423)
+.+|...|++++|+|+++++++|+.|++|++||+++++.+.... .+...+
T Consensus 63 ---------------~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~--~h~~~~------------- 112 (318)
T 4ggc_A 63 ---------------MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT--SHSARV------------- 112 (318)
T ss_dssp ---------------CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCE-------------
T ss_pred ---------------ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec--CccceE-------------
Confidence 23578889999999999999999999999999998776543222 222222
Q ss_pred EEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc-eeeeeccccccCeEEEEE
Q psy13076 192 VVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF-KFKMTKQEHSRFVQAVRY 270 (423)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~-~~~~~~~~~~~~i~~l~~ 270 (423)
.++.+. +. .+++++.++.+.+|+.... ........|...+..+++
T Consensus 113 -------------------------------~~~~~~--~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (318)
T 4ggc_A 113 -------------------------------GSLSWN--SY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW 158 (318)
T ss_dssp -------------------------------EEEEEE--TT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred -------------------------------EEeecC--CC-EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEE
Confidence 222222 22 4788889999999876543 344556788899999999
Q ss_pred CCCCCEEEEEEecCeEEEEECCCccceecc--cccccCCCeEEEEECCCCCeE---EEEeCCCcEEEEecCCcceeeeee
Q psy13076 271 SPSGSHFASAGFDGKVFLYDGASADLVSEL--GNPAHKGGVYAVAWKPDGTQL---LTASGDKTCKLWDIETKSAVSEFL 345 (423)
Q Consensus 271 s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l---~s~s~d~~i~iwd~~~~~~i~~~~ 345 (423)
+++++++++++.||.|++||.++++..... ....+.+.|.+++++|++..+ ++++.+++|++||...........
T Consensus 159 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~ 238 (318)
T 4ggc_A 159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD 238 (318)
T ss_dssp CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE
T ss_pred cCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc
Confidence 999999999999999999999887643221 223567889999999977643 466788999999999887766554
Q ss_pred eCceeEeeEEEEEecCcEEEEEe--CCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076 346 MGNQVEDQQVSCLWQGDYLLTVS--LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 422 (423)
Q Consensus 346 ~~~~~~~~~~~~~~~g~~l~~~~--~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~ 422 (423)
.... .......+.+..+++++ .++.|++||+.+. .+++.+.+|.++|++++|+||+++|+|||.||+|++||+.
T Consensus 239 ~~~~--v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~-~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 239 AHSQ--VCSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp CSSC--EEEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred ceee--eeeeeecccccceEEEEEcCCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 4333 33445566788777654 7899999999875 5578899999999999999999999999999999999974
No 72
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-37 Score=288.56 Aligned_cols=291 Identities=15% Similarity=0.202 Sum_probs=231.9
Q ss_pred ccCceeEEEEeCCCC-eEEEe----------cCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEE
Q psy13076 46 HNKPITALALSPDRG-TVFTG----------SHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVI 114 (423)
Q Consensus 46 h~~~V~~l~~~~~~~-~l~sg----------~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (423)
+..+|.+++|+|+++ +|++| +.|++|++||++++.....
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~------------------------------ 60 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP------------------------------ 60 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC------------------------------
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE------------------------------
Confidence 345789999999987 99999 8999999999987532100
Q ss_pred EEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCC--ceeEEeeecCCCCCeeEEEECCC-CCeEE
Q psy13076 115 IRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK--EHILKNEFHPIGGPIKDIAWSPD-NQRMV 191 (423)
Q Consensus 115 i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~-~~~~~ 191 (423)
.. ...|...|++++|+|++++|++++.|+.|++||+.+. .......+..+..+|.+++|+|+ +..++
T Consensus 61 ---------~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 130 (416)
T 2pm9_A 61 ---------IA-SLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLA 130 (416)
T ss_dssp ---------SC-CCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEE
T ss_pred ---------EE-EEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEE
Confidence 01 1247788999999999999999999999999999862 11123345566789999999998 77777
Q ss_pred EEEcCCceeeEEEeecCCc------ce---ecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecccc-
Q psy13076 192 VVGEGRERFGHVFMSETGT------SV---GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH- 261 (423)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~------~~---~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~- 261 (423)
+++.+ ....+|+...+. .. .....|...+.+++|+|++...+++++.|+.|++|+....+.......+
T Consensus 131 s~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 208 (416)
T 2pm9_A 131 SGGNN--GEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTS 208 (416)
T ss_dssp EECSS--SCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCC
T ss_pred EEcCC--CeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccc
Confidence 66543 335667666554 22 2335688899999999996667999999999999998877766666555
Q ss_pred -----ccCeEEEEECCCC-CEEEEEEecC---eEEEEECCCcc-ceecccccccCCCeEEEEECC-CCCeEEEEeCCCcE
Q psy13076 262 -----SRFVQAVRYSPSG-SHFASAGFDG---KVFLYDGASAD-LVSELGNPAHKGGVYAVAWKP-DGTQLLTASGDKTC 330 (423)
Q Consensus 262 -----~~~i~~l~~s~~g-~~l~s~s~dg---~i~vwd~~~~~-~~~~~~~~~~~~~i~~l~~~~-~~~~l~s~s~d~~i 330 (423)
...+.+++|+|++ .++++++.|+ .|++||.+++. ....+. ..|...|.+++|+| ++++|++++.|++|
T Consensus 209 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~l~s~~~dg~v 287 (416)
T 2pm9_A 209 PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN-QGHQKGILSLDWCHQDEHLLLSSGRDNTV 287 (416)
T ss_dssp CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC-SCCSSCEEEEEECSSCSSCEEEEESSSEE
T ss_pred cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee-cCccCceeEEEeCCCCCCeEEEEeCCCCE
Confidence 7789999999998 5899999999 99999999864 444442 15889999999999 99999999999999
Q ss_pred EEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCC-CeEEE
Q psy13076 331 KLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDR-GTVFT 409 (423)
Q Consensus 331 ~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~-~~l~s 409 (423)
++||+++++.+ ..+.+|..+|++++|+|++ ++|++
T Consensus 288 ~~wd~~~~~~~--------------------------------------------~~~~~~~~~v~~~~~s~~~~~~l~s 323 (416)
T 2pm9_A 288 LLWNPESAEQL--------------------------------------------SQFPARGNWCFKTKFAPEAPDLFAC 323 (416)
T ss_dssp EEECSSSCCEE--------------------------------------------EEEECSSSCCCCEEECTTCTTEEEE
T ss_pred EEeeCCCCccc--------------------------------------------eeecCCCCceEEEEECCCCCCEEEE
Confidence 99999876432 3345788999999999999 89999
Q ss_pred ecCCCcEEEeeCCC
Q psy13076 410 GSHDGFITRWNAKT 423 (423)
Q Consensus 410 ~s~D~~i~~W~~~~ 423 (423)
++.|+.|++||+.+
T Consensus 324 ~~~d~~i~iw~~~~ 337 (416)
T 2pm9_A 324 ASFDNKIEVQTLQN 337 (416)
T ss_dssp CCSSSEEEEEESCC
T ss_pred EecCCcEEEEEccC
Confidence 99999999999753
No 73
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=7.7e-37 Score=280.86 Aligned_cols=305 Identities=14% Similarity=0.181 Sum_probs=204.1
Q ss_pred eecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCC
Q psy13076 41 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN 120 (423)
Q Consensus 41 ~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 120 (423)
..++||.++|++++|+|++++|++|+.||+|++||+.++...
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-------------------------------------- 46 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN-------------------------------------- 46 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC--------------------------------------
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc--------------------------------------
Confidence 467899999999999999999999999999999998753210
Q ss_pred CcccccccCCcceEEEEEECC--CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCc
Q psy13076 121 PAISDIYTEHSCAVNVAKYSP--SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE 198 (423)
Q Consensus 121 ~~~~~~~~~h~~~i~~~~~sp--~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~ 198 (423)
......+.+|...|++++|+| ++++|++++.|++|++||+...+.... ....
T Consensus 47 ~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~------~~~~-------------------- 100 (351)
T 3f3f_A 47 WELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECS------GRRW-------------------- 100 (351)
T ss_dssp EEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTS------SCSE--------------------
T ss_pred ceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccc------ccCc--------------------
Confidence 011234567999999999999 699999999999999999876532100 0000
Q ss_pred eeeEEEeecCCcceecccCCCcceeEEEEecC--CCeeEEEEeCCCeEEEEcCCCceeee-------------ecccccc
Q psy13076 199 RFGHVFMSETGTSVGEISGQSKPINSCDFKPS--RPFRIITGSEDNTIAVFEGPPFKFKM-------------TKQEHSR 263 (423)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~s~s~d~~i~~~~~~~~~~~~-------------~~~~~~~ 263 (423)
..+..+..|...+.+++|+|+ +. .+++++.|+.|++||....+... ....+..
T Consensus 101 -----------~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (351)
T 3f3f_A 101 -----------NKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQ 168 (351)
T ss_dssp -----------EEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSC
T ss_pred -----------ceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhccccccccccccccccCCccc
Confidence 001112234445556666665 43 36777788888888754332111 1225667
Q ss_pred CeEEEEECCC---CCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCC----CeEEEEeCCCcEEEEecC
Q psy13076 264 FVQAVRYSPS---GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDG----TQLLTASGDKTCKLWDIE 336 (423)
Q Consensus 264 ~i~~l~~s~~---g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~----~~l~s~s~d~~i~iwd~~ 336 (423)
.+.+++|+|+ +.++++++.|+.+.+|+...++........+|...|.+++|+|++ ++|++++.|++|++||++
T Consensus 169 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~ 248 (351)
T 3f3f_A 169 SDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT 248 (351)
T ss_dssp CCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEE
T ss_pred ceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCC
Confidence 8999999997 899999999999988888777653223335689999999999998 899999999999999998
Q ss_pred CcceeeeeeeCceeEeeEEEEEecCcEEEEEeC----CCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecC
Q psy13076 337 TKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSL----SGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSH 412 (423)
Q Consensus 337 ~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~----~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~ 412 (423)
.+.......... ..............+..+.. ...+.+|+... ..++..+.+|..+|++++|+|++++|+|++.
T Consensus 249 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 326 (351)
T 3f3f_A 249 EKLSPLASEESL-TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ-VELLSEHDDHNGEVWSVSWNLTGTILSSAGD 326 (351)
T ss_dssp ECC----------------------------------------CCSEE-EEEEEEECTTSSCEEEEEECSSSCCEEEEET
T ss_pred CCcCccccCCcc-cceeccCCCcccccccccccccccceeeeeccccc-ccEEEEEecccccEEEEEEcCCCCEEEEecC
Confidence 764432221110 00011111112222222222 22233333322 2345678899999999999999999999999
Q ss_pred CCcEEEeeCCC
Q psy13076 413 DGFITRWNAKT 423 (423)
Q Consensus 413 D~~i~~W~~~~ 423 (423)
||.|++|++++
T Consensus 327 dg~v~iw~~~~ 337 (351)
T 3f3f_A 327 DGKVRLWKATY 337 (351)
T ss_dssp TSCEEEEEECT
T ss_pred CCcEEEEecCc
Confidence 99999999864
No 74
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-36 Score=278.70 Aligned_cols=283 Identities=18% Similarity=0.224 Sum_probs=235.2
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT 88 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~ 88 (423)
++++++||++|++++.||.|++||+.+ .+++..+.+|.++|.+++|+|++++|++++.|++|++||+++++....+
T Consensus 37 ~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--- 112 (369)
T 3zwl_B 37 QVKYNKEGDLLFSCSKDSSASVWYSLN-GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW--- 112 (369)
T ss_dssp EEEECTTSCEEEEEESSSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE---
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEeCCC-chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe---
Confidence 345556999999999999999999976 5678899999999999999999999999999999999999876543321
Q ss_pred CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccC-----CcEEEEEcCCC
Q psy13076 89 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS-----GKVRIWDTVNK 163 (423)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d-----~~i~vwd~~~~ 163 (423)
. |...|.+++|+|+++++++++.+ +.|++||+...
T Consensus 113 ---------------------------------------~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~ 152 (369)
T 3zwl_B 113 ---------------------------------------K-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERD 152 (369)
T ss_dssp ---------------------------------------E-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred ---------------------------------------e-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCC
Confidence 1 55678999999999999999998 99999998754
Q ss_pred ceeEE---------eeecCCCC--CeeEEEECCCCCeEEEEEcCCceeeEEEeecC-CcceecccCCCcceeEEEEecCC
Q psy13076 164 EHILK---------NEFHPIGG--PIKDIAWSPDNQRMVVVGEGRERFGHVFMSET-GTSVGEISGQSKPINSCDFKPSR 231 (423)
Q Consensus 164 ~~~~~---------~~~~~~~~--~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~ 231 (423)
..... .....+.. .+.+++|+|+++.+++++.+. ...+|+... ...+..+..+...+.+++|+|++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 230 (369)
T 3zwl_B 153 SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDG--KISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL 230 (369)
T ss_dssp TTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTS--EEEEEETTTTTEEEEEEECCSSCEEEEEECTTS
T ss_pred ccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCC--EEEEEECCCCcEeEEEEecCCCceeEEEECCCC
Confidence 32110 11112223 899999999999988876543 456777776 56677788899999999999988
Q ss_pred CeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecC--------------eEEEEECCCccce
Q psy13076 232 PFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDG--------------KVFLYDGASADLV 297 (423)
Q Consensus 232 ~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg--------------~i~vwd~~~~~~~ 297 (423)
.+ +++++.|+.|++||....+...... +...+..++|+|+++++++++.++ .+++||..+++.+
T Consensus 231 ~~-l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 308 (369)
T 3zwl_B 231 TY-FITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI 308 (369)
T ss_dssp SE-EEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEE
T ss_pred CE-EEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcch
Confidence 75 8899999999999988766655554 667899999999999999999988 8999999999887
Q ss_pred ecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCccee
Q psy13076 298 SELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAV 341 (423)
Q Consensus 298 ~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i 341 (423)
..+. .|...|.+++|+|++++|++++.|++|++|++..+...
T Consensus 309 ~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 309 GRVQ--GHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp EEEE--CCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred hhee--cccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccch
Confidence 7764 68899999999999999999999999999999876543
No 75
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=6.1e-37 Score=278.87 Aligned_cols=259 Identities=24% Similarity=0.336 Sum_probs=198.7
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccCCC-CceeecccccCceeEEEEeC--CCCeEEEecCCCceEEeecCCcceeecc
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNNPS-TPIRVIKGHNKPITALALSP--DRGTVFTGSHDGFITRWNAKTEYIFATL 85 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~-~~~~~~~gh~~~V~~l~~~~--~~~~l~sg~~D~~i~vW~~~~~~~~~~~ 85 (423)
.+++++||++||+|+.|+.|++||+.++. .++..++||.++|.+++|++ ++++|+||+.|++|++||++++...
T Consensus 18 ~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~--- 94 (316)
T 3bg1_A 18 DAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWE--- 94 (316)
T ss_dssp EEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCC---
T ss_pred EeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcce---
Confidence 45666799999999999999999997643 25678999999999999986 4889999999999999998764210
Q ss_pred cCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCC--CCEEEEEccCCcEEEEEcCCC
Q psy13076 86 PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS--GFYIASGDISGKVRIWDTVNK 163 (423)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~~~d~~i~vwd~~~~ 163 (423)
....+.+|...|++++|+|+ +.+|++++.|++|++||+...
T Consensus 95 -------------------------------------~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~ 137 (316)
T 3bg1_A 95 -------------------------------------KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE 137 (316)
T ss_dssp -------------------------------------EEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred -------------------------------------EEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence 11134579999999999998 889999999999999998765
Q ss_pred cee-EEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCC
Q psy13076 164 EHI-LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN 242 (423)
Q Consensus 164 ~~~-~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~ 242 (423)
... ....+..+...|.+++|+|+...-. +.... .++ .+.....+++++.|+
T Consensus 138 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-----------~~~~~--------~~~---------~~~~~~~l~sgs~D~ 189 (316)
T 3bg1_A 138 GQWEVKKINNAHTIGCNAVSWAPAVVPGS-----------LIDHP--------SGQ---------KPNYIKRFASGGCDN 189 (316)
T ss_dssp SCEEECCBTTSSSSCBCCCEECCCCCC-----------------C--------CSC---------CCCCCCBEECCBTTS
T ss_pred CCcceeeeeccccCCcceEEEccccCCcc-----------ccccc--------ccc---------CccccceEEEecCCC
Confidence 321 1223345567889999999753100 00000 000 011123589999999
Q ss_pred eEEEEcCCCc---eeeeeccccccCeEEEEECCCC----CEEEEEEecCeEEEEECCCcc---c-eecccccccCCCeEE
Q psy13076 243 TIAVFEGPPF---KFKMTKQEHSRFVQAVRYSPSG----SHFASAGFDGKVFLYDGASAD---L-VSELGNPAHKGGVYA 311 (423)
Q Consensus 243 ~i~~~~~~~~---~~~~~~~~~~~~i~~l~~s~~g----~~l~s~s~dg~i~vwd~~~~~---~-~~~~~~~~~~~~i~~ 311 (423)
+|++|+.... +....+..|...|.+++|+|++ ++|++++.||.|++|+..+.. . ...+ ..|...|.+
T Consensus 190 ~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~--~~~~~~v~~ 267 (316)
T 3bg1_A 190 LIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLL--HKFNDVVWH 267 (316)
T ss_dssp BCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEE--EECSSCEEE
T ss_pred eEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhh--hcCCCcEEE
Confidence 9999997532 4556778899999999999987 789999999999999987632 1 1122 357889999
Q ss_pred EEECCCCCeEEEEeCCCcEEEEecCC
Q psy13076 312 VAWKPDGTQLLTASGDKTCKLWDIET 337 (423)
Q Consensus 312 l~~~~~~~~l~s~s~d~~i~iwd~~~ 337 (423)
++|+|++++|++++.|++|++|+...
T Consensus 268 v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 268 VSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 99999999999999999999999763
No 76
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-35 Score=266.76 Aligned_cols=278 Identities=14% Similarity=0.201 Sum_probs=228.9
Q ss_pred eEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCC
Q psy13076 10 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQ 89 (423)
Q Consensus 10 ~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~ 89 (423)
+++ ++++++++++.||.|++||+.+ .+....+.+|.++|.+++|+|++++|++|+.|+.|++|++....
T Consensus 24 ~~~-~~~~~l~s~~~dg~v~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~--------- 92 (313)
T 3odt_A 24 VVA-VDDSKVASVSRDGTVRLWSKDD-QWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATS--------- 92 (313)
T ss_dssp EEE-EETTEEEEEETTSEEEEEEESS-SEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCT---------
T ss_pred EEe-cCCCEEEEEEcCCcEEEEECCC-CEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecC---------
Confidence 444 6999999999999999999965 55677889999999999999999999999999999999986521
Q ss_pred CCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEe
Q psy13076 90 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN 169 (423)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 169 (423)
.++....+.+|...|.++.| ++.++++++.|+.|++|| ..+.. .
T Consensus 93 ------------------------------~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~--~ 136 (313)
T 3odt_A 93 ------------------------------GEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLV--Y 136 (313)
T ss_dssp ------------------------------TSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEE--E
T ss_pred ------------------------------CCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEE--E
Confidence 11223345679999999999 678999999999999999 33332 2
Q ss_pred eecCCCCCeeEEEECC-CCCeEEEEEcCCceeeEEEeecCCcceecccC-CCcceeEEEEecCCCeeEEEEeCCCeEEEE
Q psy13076 170 EFHPIGGPIKDIAWSP-DNQRMVVVGEGRERFGHVFMSETGTSVGEISG-QSKPINSCDFKPSRPFRIITGSEDNTIAVF 247 (423)
Q Consensus 170 ~~~~~~~~v~~v~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~ 247 (423)
.+..+..++.+++|+| ++..+++++.+.. ..+|+ .......+.. +...+.+++|+|++. +++++.|+.|++|
T Consensus 137 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~ 210 (313)
T 3odt_A 137 NLQAHNASVWDAKVVSFSENKFLTASADKT--IKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLV 210 (313)
T ss_dssp EEECCSSCEEEEEEEETTTTEEEEEETTSC--EEEEE--TTEEEEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEE
T ss_pred ecccCCCceeEEEEccCCCCEEEEEECCCC--EEEEe--cCceEEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEE
Confidence 3344568899999998 8888877765433 34554 5555556665 888999999999886 8899999999999
Q ss_pred cCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCC
Q psy13076 248 EGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD 327 (423)
Q Consensus 248 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d 327 (423)
+.+..+....+..|...|++++|+|++ .+++++.||.|++||.++++....+. .|...|.+++|+|+++ +++++.|
T Consensus 211 d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~-~~~~~~d 286 (313)
T 3odt_A 211 DMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT--LPAISIWSVDCMSNGD-IIVGSSD 286 (313)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE--CSSSCEEEEEECTTSC-EEEEETT
T ss_pred ECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe--ccCceEEEEEEccCCC-EEEEeCC
Confidence 998888777888899999999999999 68899999999999999998877764 5788999999999998 6679999
Q ss_pred CcEEEEecCCcceeeee
Q psy13076 328 KTCKLWDIETKSAVSEF 344 (423)
Q Consensus 328 ~~i~iwd~~~~~~i~~~ 344 (423)
+.|++||+++++.+...
T Consensus 287 g~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 287 NLVRIFSQEKSRWASED 303 (313)
T ss_dssp SCEEEEESCGGGCCC--
T ss_pred CcEEEEeCCCCceeehh
Confidence 99999999988765543
No 77
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.9e-35 Score=268.63 Aligned_cols=273 Identities=17% Similarity=0.312 Sum_probs=221.6
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccCCCC--ceeecc--cccCceeEEEEeCCCCeEEEecCCCceEEeecCCcc--ee
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNNPST--PIRVIK--GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEY--IF 82 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~--~~~~~~--gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~--~~ 82 (423)
++++++||+++++++ ||.|++||+.++.. ++..+. +|..+|.+++|+|++++|++++.|+.|++||+++++ ..
T Consensus 56 ~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 134 (337)
T 1gxr_A 56 AVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK 134 (337)
T ss_dssp EEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE
T ss_pred EEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCccee
Confidence 455666999999998 99999999976432 233333 899999999999999999999999999999998875 33
Q ss_pred ecccCCCCCCceEEeeCCCCCeEEEe-cCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcC
Q psy13076 83 ATLPRTQRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV 161 (423)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~ 161 (423)
..+. ........+.++|+++.++.. .+..+.+|++++++....+.+|...|.+++|+|+++++++++.|+.|++||++
T Consensus 135 ~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~ 213 (337)
T 1gxr_A 135 AELT-SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213 (337)
T ss_dssp EEEE-CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eecc-cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECC
Confidence 3332 223445567889999887765 46789999999999999999999999999999999999999999999999998
Q ss_pred CCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCC
Q psy13076 162 NKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSED 241 (423)
Q Consensus 162 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d 241 (423)
+.+...... ...++.+++|+|+++. +++++.+
T Consensus 214 ~~~~~~~~~---~~~~v~~~~~s~~~~~---------------------------------------------l~~~~~~ 245 (337)
T 1gxr_A 214 EGRQLQQHD---FTSQIFSLGYCPTGEW---------------------------------------------LAVGMES 245 (337)
T ss_dssp TTEEEEEEE---CSSCEEEEEECTTSSE---------------------------------------------EEEEETT
T ss_pred CCceEeeec---CCCceEEEEECCCCCE---------------------------------------------EEEEcCC
Confidence 766543322 2345666666665543 5566778
Q ss_pred CeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeE
Q psy13076 242 NTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQL 321 (423)
Q Consensus 242 ~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l 321 (423)
+.+++|+...... .....|...+.+++|+|++++|++++.||.|++||..+++..... .|...+.+++|+|++++|
T Consensus 246 ~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l 321 (337)
T 1gxr_A 246 SNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS---KESSSVLSCDISVDDKYI 321 (337)
T ss_dssp SCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE---ECSSCEEEEEECTTSCEE
T ss_pred CcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe---cCCCcEEEEEECCCCCEE
Confidence 8889998765543 345678889999999999999999999999999999988876443 477889999999999999
Q ss_pred EEEeCCCcEEEEec
Q psy13076 322 LTASGDKTCKLWDI 335 (423)
Q Consensus 322 ~s~s~d~~i~iwd~ 335 (423)
++++.|+.|++||+
T Consensus 322 ~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 322 VTGSGDKKATVYEV 335 (337)
T ss_dssp EEEETTSCEEEEEE
T ss_pred EEecCCCeEEEEEE
Confidence 99999999999996
No 78
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.6e-36 Score=288.64 Aligned_cols=285 Identities=16% Similarity=0.163 Sum_probs=207.0
Q ss_pred eeEEEE-eCCEEEEEeccceEEEEeccCCCC-ceeecccccCceeEEEEeC-CCCeEEEecCCCceEEeecCCcceeecc
Q psy13076 9 QVSCLW-QGDYLLTVSLSGFISYLDVNNPST-PIRVIKGHNKPITALALSP-DRGTVFTGSHDGFITRWNAKTEYIFATL 85 (423)
Q Consensus 9 ~~~~~~-~~~~~~~~~~dg~i~~~d~~~~~~-~~~~~~gh~~~V~~l~~~~-~~~~l~sg~~D~~i~vW~~~~~~~~~~~ 85 (423)
+++++| ++.+||+|+.||.|+|||+.++.. ....+.||.++|++|+|+| ++.+|+||+.|++|++||++++.+....
T Consensus 124 ~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 203 (435)
T 4e54_B 124 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFA 203 (435)
T ss_dssp EEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEE
T ss_pred EEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEe
Confidence 345555 678999999999999999976543 3445789999999999998 6789999999999999999764321110
Q ss_pred cCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCce
Q psy13076 86 PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 165 (423)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~ 165 (423)
. ...+...+.+++|+|++++|++|+.|++|++||++.+.
T Consensus 204 ~----------------------------------------~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~- 242 (435)
T 4e54_B 204 S----------------------------------------SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE- 242 (435)
T ss_dssp C----------------------------------------CSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-
T ss_pred c----------------------------------------cCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-
Confidence 0 01233456778999999999999999999999985422
Q ss_pred eEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEE
Q psy13076 166 ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIA 245 (423)
Q Consensus 166 ~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~ 245 (423)
+ ..+ .+|...|.+++|+|.++..+++++.|+.|+
T Consensus 243 ~--~~~--------------------------------------------~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~ 276 (435)
T 4e54_B 243 L--WNL--------------------------------------------RMHKKKVTHVALNPCCDWFLATASVDQTVK 276 (435)
T ss_dssp C--CCS--------------------------------------------BCCSSCEEEEEECTTCSSEEEEEETTSBCC
T ss_pred e--EEE--------------------------------------------ecccceEEeeeecCCCceEEEEecCcceee
Confidence 1 111 233444555555555555678899999999
Q ss_pred EEcCCCceee---eeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccccccc----CCCeEEEEECCCC
Q psy13076 246 VFEGPPFKFK---MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAH----KGGVYAVAWKPDG 318 (423)
Q Consensus 246 ~~~~~~~~~~---~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----~~~i~~l~~~~~~ 318 (423)
+||.+..... .....|...|++++|+|+|++|++++.||.|++||..+++....+....+ ...+....|+|++
T Consensus 277 iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (435)
T 4e54_B 277 IWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRY 356 (435)
T ss_dssp EEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSS
T ss_pred EEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCC
Confidence 9997654422 23356888999999999999999999999999999998876654432111 1123345677777
Q ss_pred CeEEEEe------------CCCcEEEEecCCcceeeeeeeCceeEeeEE-EEEecCcEEEEEeCCCcEEEEecCCC
Q psy13076 319 TQLLTAS------------GDKTCKLWDIETKSAVSEFLMGNQVEDQQV-SCLWQGDYLLTVSLSGFISYLDVNNP 381 (423)
Q Consensus 319 ~~l~s~s------------~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~-~~~~~g~~l~~~~~~~~i~~~~~~~~ 381 (423)
..+++++ .+++|++||..+++.+..+...+......+ .+.++|.+|++|+ ++.|++|+++++
T Consensus 357 ~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 357 NLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp SCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred CEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence 7766654 346799999999998877654443333333 3567999998876 789999999775
No 79
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-36 Score=278.98 Aligned_cols=263 Identities=20% Similarity=0.275 Sum_probs=202.1
Q ss_pred CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEe
Q psy13076 38 TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRN 117 (423)
Q Consensus 38 ~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 117 (423)
+++.++++|.++|++++|+|++++|++|+.||+|++||++....
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~------------------------------------ 45 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH------------------------------------ 45 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE------------------------------------
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc------------------------------------
Confidence 34668899999999999999999999999999999999863211
Q ss_pred cCCCcccccccCCcceEEEEEECCC--CCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEc
Q psy13076 118 IENPAISDIYTEHSCAVNVAKYSPS--GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGE 195 (423)
Q Consensus 118 ~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~ 195 (423)
.....+.+|...|++++|+|+ +++|++++.|+.|++||+.+.+......+..+..+|.+++|+|+..
T Consensus 46 ----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------- 114 (379)
T 3jrp_A 46 ----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY------- 114 (379)
T ss_dssp ----EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGG-------
T ss_pred ----eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCC-------
Confidence 112245679999999999987 9999999999999999998765333333333445555555555410
Q ss_pred CCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc--eeeeeccccccCeEEEEECC-
Q psy13076 196 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF--KFKMTKQEHSRFVQAVRYSP- 272 (423)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~--~~~~~~~~~~~~i~~l~~s~- 272 (423)
+. .+++++.|+.|++|+.... ........|...|.+++|+|
T Consensus 115 -----------------------------------~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 158 (379)
T 3jrp_A 115 -----------------------------------GP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 158 (379)
T ss_dssp -----------------------------------CS-EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred -----------------------------------CC-EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence 22 3677888999999987654 23345567888999999999
Q ss_pred ------------CCCEEEEEEecCeEEEEECCCccceec--ccccccCCCeEEEEECCC---CCeEEEEeCCCcEEEEec
Q psy13076 273 ------------SGSHFASAGFDGKVFLYDGASADLVSE--LGNPAHKGGVYAVAWKPD---GTQLLTASGDKTCKLWDI 335 (423)
Q Consensus 273 ------------~g~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~~~i~~l~~~~~---~~~l~s~s~d~~i~iwd~ 335 (423)
++.++++++.||.|++||++++..... .....|...|.+++|+|+ +++|++++.|+.|++||+
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~ 238 (379)
T 3jrp_A 159 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 238 (379)
T ss_dssp C----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred cccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence 699999999999999999987653211 122468899999999999 899999999999999999
Q ss_pred CCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCc
Q psy13076 336 ETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGF 415 (423)
Q Consensus 336 ~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~ 415 (423)
.++...... .......|...|++++|+|++++|++++.||.
T Consensus 239 ~~~~~~~~~---------------------------------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 279 (379)
T 3jrp_A 239 DNEQGPWKK---------------------------------------TLLKEEKFPDVLWRASWSLSGNVLALSGGDNK 279 (379)
T ss_dssp SSTTSCCEE---------------------------------------EESSSSCCSSCEEEEEECSSSCCEEEEESSSS
T ss_pred CCCCcccee---------------------------------------eeeccccCCCcEEEEEEcCCCCEEEEecCCCc
Confidence 875421100 00112458889999999999999999999999
Q ss_pred EEEeeCC
Q psy13076 416 ITRWNAK 422 (423)
Q Consensus 416 i~~W~~~ 422 (423)
|++|++.
T Consensus 280 i~iw~~~ 286 (379)
T 3jrp_A 280 VTLWKEN 286 (379)
T ss_dssp EEEEEEE
T ss_pred EEEEeCC
Confidence 9999974
No 80
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.8e-37 Score=286.47 Aligned_cols=283 Identities=13% Similarity=0.174 Sum_probs=212.7
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccCCC-CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNNPS-TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR 87 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~-~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~ 87 (423)
++++++||++||+++.||.|++||+.+.. ++...+++|.++|.+++|+|++++|++|+.|++|++||++++...
T Consensus 16 ~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~----- 90 (377)
T 3dwl_C 16 EHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTW----- 90 (377)
T ss_dssp CCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CC-----
T ss_pred EEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCce-----
Confidence 56677799999999999999999998643 677789999999999999999999999999999999999865300
Q ss_pred CCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCcee-
Q psy13076 88 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI- 166 (423)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~- 166 (423)
.....+.+|...|.+++|+|++++|++++.|++|++||+++.+..
T Consensus 91 ----------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 136 (377)
T 3dwl_C 91 ----------------------------------KQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWW 136 (377)
T ss_dssp ----------------------------------CCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CC
T ss_pred ----------------------------------eeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccce
Confidence 011234568899999999999999999999999999999876521
Q ss_pred EEeeecC-CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec------------------CCcceecccCCCcceeEEEE
Q psy13076 167 LKNEFHP-IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE------------------TGTSVGEISGQSKPINSCDF 227 (423)
Q Consensus 167 ~~~~~~~-~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~i~~~~~ 227 (423)
....+.. +...|.+++|+|+++.+++++.+. ...+|+.. .+..+..+ .|...|.+++|
T Consensus 137 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~ 213 (377)
T 3dwl_C 137 VSKHLKRPLRSTILSLDWHPNNVLLAAGCADR--KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGF 213 (377)
T ss_dssp CCEEECSSCCSCEEEEEECTTSSEEEEEESSS--CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEE
T ss_pred eeeEeecccCCCeEEEEEcCCCCEEEEEeCCC--EEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEE
Confidence 1122333 678899999999999988877653 34667653 23344445 78889999999
Q ss_pred ecCCCeeEEEEeCCCeEEEEcCCCcee----eeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCcc-c-eecc-
Q psy13076 228 KPSRPFRIITGSEDNTIAVFEGPPFKF----KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD-L-VSEL- 300 (423)
Q Consensus 228 ~~~~~~~~~s~s~d~~i~~~~~~~~~~----~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~-~-~~~~- 300 (423)
+|++.+ +++++.|+.|++|+...... ...+..|...|.+++|+|+|++|++|+.|+.+ +|+..... . ...+
T Consensus 214 sp~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~ 291 (377)
T 3dwl_C 214 SPSGNA-LAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLD 291 (377)
T ss_dssp CTTSSC-EEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCC
T ss_pred CCCCCE-EEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeec
Confidence 999885 89999999999999766554 56677888999999999999999998877666 56543111 0 0000
Q ss_pred -----------------------------------------------cccccCCCeEEEEECCCC-C---eEEEEeCCCc
Q psy13076 301 -----------------------------------------------GNPAHKGGVYAVAWKPDG-T---QLLTASGDKT 329 (423)
Q Consensus 301 -----------------------------------------------~~~~~~~~i~~l~~~~~~-~---~l~s~s~d~~ 329 (423)
....|...|.++++.+.. . .|+|++.||+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~ 371 (377)
T 3dwl_C 292 AGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGR 371 (377)
T ss_dssp SCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSE
T ss_pred ccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCc
Confidence 001388999999976644 3 6999999999
Q ss_pred EEEEec
Q psy13076 330 CKLWDI 335 (423)
Q Consensus 330 i~iwd~ 335 (423)
|++||+
T Consensus 372 i~iWdl 377 (377)
T 3dwl_C 372 VVLWTL 377 (377)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999985
No 81
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.1e-35 Score=279.72 Aligned_cols=277 Identities=20% Similarity=0.332 Sum_probs=222.4
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT 88 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~ 88 (423)
+.++.+||+++++|+.||.|++||+.+ .++...+.+|.++|.+++| ++++|++|+.||+|++||+++++...
T Consensus 136 v~~~~~d~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~----- 207 (435)
T 1p22_A 136 VYCLQYDDQKIVSGLRDNTIKIWDKNT-LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN----- 207 (435)
T ss_dssp EEEEECCSSEEEEEESSSCEEEEESSS-CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE-----
T ss_pred EEEEEECCCEEEEEeCCCeEEEEeCCC-CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE-----
Confidence 556668999999999999999999976 5677889999999999999 77899999999999999998764432
Q ss_pred CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEE
Q psy13076 89 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 168 (423)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~ 168 (423)
.+.+|...|.+++|++ .++++++.|++|++||+.+......
T Consensus 208 -------------------------------------~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~ 248 (435)
T 1p22_A 208 -------------------------------------TLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITL 248 (435)
T ss_dssp -------------------------------------EECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEE
T ss_pred -------------------------------------EEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCcee
Confidence 2346888899999974 5999999999999999876543211
Q ss_pred -eeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEE
Q psy13076 169 -NEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF 247 (423)
Q Consensus 169 -~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~ 247 (423)
..+ .+|...+.++.+. +. .+++++.|+.|++|
T Consensus 249 ~~~~--------------------------------------------~~~~~~v~~~~~~--~~-~l~s~~~dg~i~vw 281 (435)
T 1p22_A 249 RRVL--------------------------------------------VGHRAAVNVVDFD--DK-YIVSASGDRTIKVW 281 (435)
T ss_dssp EEEE--------------------------------------------CCCSSCEEEEEEE--TT-EEEEEETTSEEEEE
T ss_pred eeEe--------------------------------------------cCCCCcEEEEEeC--CC-EEEEEeCCCeEEEE
Confidence 111 2233445555552 22 48889999999999
Q ss_pred cCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCC
Q psy13076 248 EGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD 327 (423)
Q Consensus 248 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d 327 (423)
|....+.......|...+.++++ ++.++++|+.||.|++||.++++.+..+. +|...|.+++| ++++|++|+.|
T Consensus 282 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~--~~~~l~sg~~d 355 (435)
T 1p22_A 282 NTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE--GHEELVRCIRF--DNKRIVSGAYD 355 (435)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEC--CSSEEEEEETT
T ss_pred ECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEe--CCcCcEEEEEe--cCCEEEEEeCC
Confidence 99888888888889999999998 46899999999999999999998887774 58899999998 78899999999
Q ss_pred CcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeE
Q psy13076 328 KTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTV 407 (423)
Q Consensus 328 ~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l 407 (423)
++|++||+.++..... ......+..+.+|..+|++++| ++++|
T Consensus 356 g~i~vwd~~~~~~~~~-----------------------------------~~~~~~~~~~~~h~~~v~~l~~--~~~~l 398 (435)
T 1p22_A 356 GKIKVWDLVAALDPRA-----------------------------------PAGTLCLRTLVEHSGRVFRLQF--DEFQI 398 (435)
T ss_dssp SCEEEEEHHHHTSTTS-----------------------------------CTTTTEEEEECCCSSCCCCEEE--CSSCE
T ss_pred CcEEEEECCCCCCccc-----------------------------------cccchheeeccCCCCCeEEEEe--CCCEE
Confidence 9999999876541100 0011234567889999999999 78899
Q ss_pred EEecCCCcEEEeeCC
Q psy13076 408 FTGSHDGFITRWNAK 422 (423)
Q Consensus 408 ~s~s~D~~i~~W~~~ 422 (423)
++++.||+|++||+.
T Consensus 399 ~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 399 VSSSHDDTILIWDFL 413 (435)
T ss_dssp EECCSSSEEEEEC--
T ss_pred EEEeCCCEEEEEECC
Confidence 999999999999975
No 82
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5.6e-36 Score=281.89 Aligned_cols=290 Identities=16% Similarity=0.248 Sum_probs=216.8
Q ss_pred eeEEEEeCC-EEEEEeccceEEEEeccCCC---CceeecccccCceeEEEEeC-CCCeEEEecCCCceEEeecCCcceee
Q psy13076 9 QVSCLWQGD-YLLTVSLSGFISYLDVNNPS---TPIRVIKGHNKPITALALSP-DRGTVFTGSHDGFITRWNAKTEYIFA 83 (423)
Q Consensus 9 ~~~~~~~~~-~~~~~~~dg~i~~~d~~~~~---~~~~~~~gh~~~V~~l~~~~-~~~~l~sg~~D~~i~vW~~~~~~~~~ 83 (423)
.++++++.. ++++++.||.|++||+.... ..+..+.+|.++|.+++|+| ++++|++|+.||+|++||+.++....
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~ 118 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL 118 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc
Confidence 355555433 33357899999999986533 34557889999999999999 89999999999999999998753211
Q ss_pred cccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCC-CEEEEEccCCcEEEEEcCC
Q psy13076 84 TLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSG-FYIASGDISGKVRIWDTVN 162 (423)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~~~d~~i~vwd~~~ 162 (423)
.. ......+.+|...|.+++|+|++ .++++++.|++|++||+.+
T Consensus 119 ~~-----------------------------------~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~ 163 (402)
T 2aq5_A 119 PL-----------------------------------REPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT 163 (402)
T ss_dssp CB-----------------------------------CSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT
T ss_pred cc-----------------------------------CCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC
Confidence 10 12234567899999999999998 6999999999999999987
Q ss_pred CceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCC
Q psy13076 163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN 242 (423)
Q Consensus 163 ~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~ 242 (423)
++.........+...|.+++|+|+++ + +++++.|+
T Consensus 164 ~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------------------------------~-l~~~~~d~ 198 (402)
T 2aq5_A 164 GAAVLTLGPDVHPDTIYSVDWSRDGA--------------------------------------------L-ICTSCRDK 198 (402)
T ss_dssp TEEEEEECTTTCCSCEEEEEECTTSS--------------------------------------------C-EEEEETTS
T ss_pred CCccEEEecCCCCCceEEEEECCCCC--------------------------------------------E-EEEEecCC
Confidence 65443221133445555566555543 2 66788899
Q ss_pred eEEEEcCCCceeeeec-cccccC-eEEEEECCCCCEEEEE---EecCeEEEEECCCccceecccccccCCCeEEEEECCC
Q psy13076 243 TIAVFEGPPFKFKMTK-QEHSRF-VQAVRYSPSGSHFASA---GFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPD 317 (423)
Q Consensus 243 ~i~~~~~~~~~~~~~~-~~~~~~-i~~l~~s~~g~~l~s~---s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~ 317 (423)
.|++||....+..... ..|... +.+++|+|+|+++++| +.|+.|++||.++++.........|...+.+++|+|+
T Consensus 199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 278 (402)
T 2aq5_A 199 RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPD 278 (402)
T ss_dssp EEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETT
T ss_pred cEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCC
Confidence 9999998877766666 566655 8899999999999999 7899999999988765222222246678999999999
Q ss_pred CCeEEE-EeCCCcEEEEecCCcce-eeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCce
Q psy13076 318 GTQLLT-ASGDKTCKLWDIETKSA-VSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPI 395 (423)
Q Consensus 318 ~~~l~s-~s~d~~i~iwd~~~~~~-i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v 395 (423)
+++|++ ++.|+.|++||+.+++. +.. +... .|..+|
T Consensus 279 ~~~l~~~g~~dg~i~i~d~~~~~~~~~~-----------------------------------------l~~~-~~~~~v 316 (402)
T 2aq5_A 279 TNIVYLCGKGDSSIRYFEITSEAPFLHY-----------------------------------------LSMF-SSKESQ 316 (402)
T ss_dssp TTEEEEEETTCSCEEEEEECSSTTCEEE-----------------------------------------EEEE-CCSSCC
T ss_pred CCEEEEEEcCCCeEEEEEecCCCcceEe-----------------------------------------eccc-ccCCcc
Confidence 999975 55799999999987652 111 1111 266889
Q ss_pred eEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076 396 TALALSPDRGTVFTGSHDGFITRWNAK 422 (423)
Q Consensus 396 ~~i~~sp~~~~l~s~s~D~~i~~W~~~ 422 (423)
++++|+|++.++++ .|+.+++|++.
T Consensus 317 ~~~~~sp~~~~~~s--~~~~~~~~~l~ 341 (402)
T 2aq5_A 317 RGMGYMPKRGLEVN--KCEIARFYKLH 341 (402)
T ss_dssp SEEEECCGGGSCGG--GTEEEEEEEEE
T ss_pred cceEEeccccccee--cceeEEEEEcC
Confidence 99999999998864 46689999864
No 83
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2e-35 Score=276.27 Aligned_cols=278 Identities=17% Similarity=0.198 Sum_probs=213.7
Q ss_pred eeEEEEeC-CEEEEEeccceEEEEeccCCCCceeec--ccccCceeEEEEeC-CCCeEEEecCCCceEEeecCCcceeec
Q psy13076 9 QVSCLWQG-DYLLTVSLSGFISYLDVNNPSTPIRVI--KGHNKPITALALSP-DRGTVFTGSHDGFITRWNAKTEYIFAT 84 (423)
Q Consensus 9 ~~~~~~~~-~~~~~~~~dg~i~~~d~~~~~~~~~~~--~gh~~~V~~l~~~~-~~~~l~sg~~D~~i~vW~~~~~~~~~~ 84 (423)
+++++++| ++|++|+.||.|++||+.+.. ....+ .+|.++|.+++|+| ++++|++++.|++|++||+++..+. .
T Consensus 78 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~ 155 (383)
T 3ei3_B 78 SLEWHPTHPTTVAVGSKGGDIILWDYDVQN-KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQ-V 155 (383)
T ss_dssp EEEECSSCTTEEEEEEBTSCEEEEETTSTT-CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEE-E
T ss_pred EEEECCCCCCEEEEEcCCCeEEEEeCCCcc-cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceE-E
Confidence 44555687 999999999999999998643 34444 47999999999999 6789999999999999999753221 1
Q ss_pred ccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCc
Q psy13076 85 LPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 164 (423)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~ 164 (423)
+. ...+|...|.+++|+|+++++++++.|+.|++||+. .+
T Consensus 156 ~~---------------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~ 195 (383)
T 3ei3_B 156 FA---------------------------------------KTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH 195 (383)
T ss_dssp EE---------------------------------------CCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC
T ss_pred Ee---------------------------------------ccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC
Confidence 10 112456789999999999999999999999999984 34
Q ss_pred eeEEeeecCCCCCeeEEEECCCCC-eEEEEEcCCceeeEEEeecC----CcceecccCCCcceeEEEEec-CCCeeEEEE
Q psy13076 165 HILKNEFHPIGGPIKDIAWSPDNQ-RMVVVGEGRERFGHVFMSET----GTSVGEISGQSKPINSCDFKP-SRPFRIITG 238 (423)
Q Consensus 165 ~~~~~~~~~~~~~v~~v~~s~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~-~~~~~~~s~ 238 (423)
... .+..+...|.+++|+|+++ .+++++.+ ....+|+... +..+..+ .|...+.+++|+| ++.+ ++++
T Consensus 196 ~~~--~~~~h~~~v~~~~~~~~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~-l~~~ 269 (383)
T 3ei3_B 196 EIF--KEKLHKAKVTHAEFNPRCDWLMATSSVD--ATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTK-LLTT 269 (383)
T ss_dssp EEE--EEECSSSCEEEEEECSSCTTEEEEEETT--SEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCE-EEEE
T ss_pred EEE--EeccCCCcEEEEEECCCCCCEEEEEeCC--CEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCE-EEEE
Confidence 332 3445678899999999999 55555443 3457787776 3334434 6888999999999 7765 8899
Q ss_pred eCCCeEEEEcCCCceeeeecccc-------c----------cCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccc
Q psy13076 239 SEDNTIAVFEGPPFKFKMTKQEH-------S----------RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG 301 (423)
Q Consensus 239 s~d~~i~~~~~~~~~~~~~~~~~-------~----------~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~ 301 (423)
+.|+.|++|+.........+..| . ..+..++|+|+|++ +|+.||.|++||..+++.+..+.
T Consensus 270 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~ 347 (383)
T 3ei3_B 270 DQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLR 347 (383)
T ss_dssp ESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEEC
T ss_pred cCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeec
Confidence 99999999997654332222221 1 23445677777776 77899999999999999888876
Q ss_pred ccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCC
Q psy13076 302 NPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET 337 (423)
Q Consensus 302 ~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~ 337 (423)
...|...+..++|+|++++|++++ |+.|++||+++
T Consensus 348 ~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 348 DPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp BTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 545677788889999999999997 99999999864
No 84
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=9e-35 Score=278.84 Aligned_cols=307 Identities=19% Similarity=0.268 Sum_probs=218.5
Q ss_pred CceeecccccCce-eEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEE
Q psy13076 38 TPIRVIKGHNKPI-TALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIR 116 (423)
Q Consensus 38 ~~~~~~~gh~~~V-~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 116 (423)
.+...+++|.++| .++++ ++++|++|+.||+|++||+++++.+.
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~--------------------------------- 156 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL--------------------------------- 156 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---------------------------------
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---------------------------------
Confidence 3456889998885 56665 46799999999999999998764332
Q ss_pred ecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECC--CCCeEEEEE
Q psy13076 117 NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP--DNQRMVVVG 194 (423)
Q Consensus 117 ~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~--~~~~~~~~~ 194 (423)
.+.+|...|.+++|+|++ ++++|+.|++|++||+++++... .+..+..+|.+++|++ +++.+++++
T Consensus 157 ---------~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~~l~s~s 224 (464)
T 3v7d_B 157 ---------QLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTH--VFEGHNSTVRCLDIVEYKNIKYIVTGS 224 (464)
T ss_dssp ---------EECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEEEESSSCEEEEEEE
T ss_pred ---------EEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEE--EECCCCCccEEEEEecCCCCCEEEEEc
Confidence 345799999999999988 99999999999999998776543 3344556677777763 444444433
Q ss_pred cCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCC
Q psy13076 195 EGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG 274 (423)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g 274 (423)
.+. ...+|+...+.......... ........|.. ..........|...+.++ ++++
T Consensus 225 ~d~--~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~-------------------~~~~~~~~~~~~~~v~~~--~~~~ 280 (464)
T 3v7d_B 225 RDN--TLHVWKLPKESSVPDHGEEH-DYPLVFHTPEE-------------------NPYFVGVLRGHMASVRTV--SGHG 280 (464)
T ss_dssp TTS--CEEEEECCCCCCC------C-CSSEEESCGGG-------------------CTTEEEEECCCSSCEEEE--EEET
T ss_pred CCC--cEEEeeCCCCcccccccccC-CcceEeeccCC-------------------CeEEEEEccCccceEEEE--cCCC
Confidence 221 12333333222111100000 00000000000 001122345666667665 6789
Q ss_pred CEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeE
Q psy13076 275 SHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQ 354 (423)
Q Consensus 275 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~ 354 (423)
+++++|+.||.|++||..+++.+..+. +|...|.+++|+|++++|++++.|++|++||+++++++..+..+.. ..
T Consensus 281 ~~l~~~~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~-~v-- 355 (464)
T 3v7d_B 281 NIVVSGSYDNTLIVWDVAQMKCLYILS--GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA-LV-- 355 (464)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSS-CE--
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEec--CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-cE--
Confidence 999999999999999999988877764 6889999999999999999999999999999999988877753321 12
Q ss_pred EEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076 355 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423 (423)
Q Consensus 355 ~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~ 423 (423)
..+.+++.++++++.||.+++||+.+..... ...|...+..++|+|++++|++++ |+.|++||+++
T Consensus 356 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 356 GLLRLSDKFLVSAAADGSIRGWDANDYSRKF--SYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp EEEEECSSEEEEEETTSEEEEEETTTCCEEE--EEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTT
T ss_pred EEEEEcCCEEEEEeCCCcEEEEECCCCceee--eecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCC
Confidence 2334578999999999999999998865432 234777899999999999999998 89999999864
No 85
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=9.7e-36 Score=275.90 Aligned_cols=274 Identities=14% Similarity=0.174 Sum_probs=217.5
Q ss_pred CCEEEEEeccceEEEEeccCCCCceeeccc-----ccCceeEEEEeCC----CCeEEEecCCCceEEeecCCcceeeccc
Q psy13076 16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKG-----HNKPITALALSPD----RGTVFTGSHDGFITRWNAKTEYIFATLP 86 (423)
Q Consensus 16 ~~~~~~~~~dg~i~~~d~~~~~~~~~~~~g-----h~~~V~~l~~~~~----~~~l~sg~~D~~i~vW~~~~~~~~~~~~ 86 (423)
..++++++.++.|++||+.+. +.+..+++ |.+.|.+++|+|+ +++|++|+.||.|++||+++++.+.
T Consensus 34 ~~~~~~~~~~~~v~vw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~--- 109 (366)
T 3k26_A 34 DPLVFATVGSNRVTLYECHSQ-GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIK--- 109 (366)
T ss_dssp SCEEEEEEETTEEEEEEECGG-GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEE---
T ss_pred CceEEEECCCCEEEEEEcCCC-cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEee---
Confidence 556777788889999999753 44555554 5578999999998 6799999999999999988654322
Q ss_pred CCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCce
Q psy13076 87 RTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEH 165 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~ 165 (423)
.+.+|...|.+++|+| ++.++++++.|+.|++||+.+++.
T Consensus 110 ---------------------------------------~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 150 (366)
T 3k26_A 110 ---------------------------------------HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL 150 (366)
T ss_dssp ---------------------------------------EEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE
T ss_pred ---------------------------------------eecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE
Confidence 2456888999999999 999999999999999999988765
Q ss_pred eEEee-ecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceeccc----------------------------
Q psy13076 166 ILKNE-FHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS---------------------------- 216 (423)
Q Consensus 166 ~~~~~-~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 216 (423)
..... +..+...|.+++|+|+++.+++++.+. ...+|+...+.....+.
T Consensus 151 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T 3k26_A 151 VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH--SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD 228 (366)
T ss_dssp EEEECSTTSCSSCEEEEEECTTSSEEEEEETTS--CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred EEEecccccccCceeEEEECCCCCEEEEecCCC--CEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence 44321 145678899999999999998887543 35677776554443333
Q ss_pred CCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc--------------eeeeeccccccCeEEEEECCC--CCEEEEE
Q psy13076 217 GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF--------------KFKMTKQEHSRFVQAVRYSPS--GSHFASA 280 (423)
Q Consensus 217 ~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~--------------~~~~~~~~~~~~i~~l~~s~~--g~~l~s~ 280 (423)
.|...|.++.|+ +. .+++++.|+.|++|+.... ........|...|.+++|+|+ |++|++|
T Consensus 229 ~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~ 305 (366)
T 3k26_A 229 IHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALG 305 (366)
T ss_dssp SCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEE
T ss_pred CCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEE
Confidence 288899999998 33 5899999999999996543 224456677888999999999 9999999
Q ss_pred EecCeEEEEECCCcccee----cccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCC
Q psy13076 281 GFDGKVFLYDGASADLVS----ELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET 337 (423)
Q Consensus 281 s~dg~i~vwd~~~~~~~~----~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~ 337 (423)
+.||.|++||+.+++... .+....|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus 306 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 306 NQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred ecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 999999999999876543 443323378999999999999999999999999999853
No 86
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.4e-34 Score=272.30 Aligned_cols=280 Identities=17% Similarity=0.284 Sum_probs=215.3
Q ss_pred EEE-eCCEEEEEeccceEEEEeccCCCCceeec--ccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076 12 CLW-QGDYLLTVSLSGFISYLDVNNPSTPIRVI--KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT 88 (423)
Q Consensus 12 ~~~-~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~ 88 (423)
+.| .++.|| .+.|+.|+|||..++ +....+ .+|.+.|++|+|+|++++|++|+.|++|++||+++++.+..+..+
T Consensus 111 l~wS~~n~lA-vgld~tV~lWd~~tg-~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h 188 (420)
T 4gga_A 111 VDWSSGNVLA-VALDNSVYLWSASSG-DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH 188 (420)
T ss_dssp EEECTTSEEE-EEETTEEEEEETTTC-CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred EEECCCCEEE-EEeCCEEEEEECCCC-CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCC
Confidence 456 345555 456999999999864 444444 578889999999999999999999999999999999887776543
Q ss_pred CCCCceEEeeCCCCCeEEEe-cCCeEEEEecCCC-cccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCcee
Q psy13076 89 QRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENP-AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 166 (423)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~-~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~ 166 (423)
......+.+ ++..++.. .+..+.+|+.... .....+.+|...+..+.++|+++++++++.|+.+++|+..+.+..
T Consensus 189 -~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~ 265 (420)
T 4gga_A 189 -SARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 265 (420)
T ss_dssp -SSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSC
T ss_pred -CCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccccc
Confidence 233333433 45555554 4678899998754 445678899999999999999999999999999999998765421
Q ss_pred E--EeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeE
Q psy13076 167 L--KNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTI 244 (423)
Q Consensus 167 ~--~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i 244 (423)
. ......+...|.+++|+|.+..+++ .++|+.|++|
T Consensus 266 ~~~~~~~~~~~~~V~~~~~~p~~~~~la------------------------------------------~~~gs~D~~I 303 (420)
T 4gga_A 266 WVPLQTFTQHQGAVKAVAWCPWQSNVLA------------------------------------------TGGGTSDRHI 303 (420)
T ss_dssp SCCSEEECCCSSCEEEEEECTTCTTEEE------------------------------------------EEECTTTCEE
T ss_pred ceeeeeecccCCceeeeeeCCCcccEEE------------------------------------------EEeecCCCEE
Confidence 1 1122233455666666665443321 2345689999
Q ss_pred EEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEE--ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEE
Q psy13076 245 AVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG--FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLL 322 (423)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 322 (423)
++|+............+ ..+.++.|+|+++.+++++ .|+.|++||..+++.+.++. +|.+.|.+++|+|+|++|+
T Consensus 304 ~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~--gH~~~V~~l~~spdg~~l~ 380 (420)
T 4gga_A 304 RIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK--GHTSRVLSLTMSPDGATVA 380 (420)
T ss_dssp EEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSCEE
T ss_pred EEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc--CCCCCEEEEEEcCCCCEEE
Confidence 99998877766555444 4688899999999888766 68999999999999888874 6999999999999999999
Q ss_pred EEeCCCcEEEEecCCccee
Q psy13076 323 TASGDKTCKLWDIETKSAV 341 (423)
Q Consensus 323 s~s~d~~i~iwd~~~~~~i 341 (423)
||+.|++|+|||+......
T Consensus 381 S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 381 SAAADETLRLWRCFELDPA 399 (420)
T ss_dssp EEETTTEEEEECCSCSSCC
T ss_pred EEecCCeEEEEECCCCCcc
Confidence 9999999999999765443
No 87
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.7e-34 Score=260.16 Aligned_cols=277 Identities=17% Similarity=0.279 Sum_probs=211.2
Q ss_pred EEE-eCCEEEEEeccceEEEEeccCCCCceeec--ccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076 12 CLW-QGDYLLTVSLSGFISYLDVNNPSTPIRVI--KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT 88 (423)
Q Consensus 12 ~~~-~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~ 88 (423)
+.| .+++|| ++.|+.|++||+.+ .+++.++ .+|...|++++|+|++++|+||+.|++|++||+++++.+..+..+
T Consensus 31 l~WS~~~~lA-vg~D~tV~iWd~~t-g~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h 108 (318)
T 4ggc_A 31 VDWSSGNVLA-VALDNSVYLWSASS-GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH 108 (318)
T ss_dssp EEECTTSEEE-EEETTEEEEEETTT-CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred EEECCCCEEE-EEeCCEEEEEECCC-CCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCc
Confidence 345 244555 46799999999986 4555555 578889999999999999999999999999999999887776543
Q ss_pred CCCCceEEeeCCCCCeEEEe-cCCeEEEEecCCC-cccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCcee
Q psy13076 89 QRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENP-AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 166 (423)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~-~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~ 166 (423)
. .. .....+.+..++.. ....+.+|+.... .....+.+|...+..+.++++++++++++.|++|++||+.+++..
T Consensus 109 ~-~~--~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 185 (318)
T 4ggc_A 109 S-AR--VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 185 (318)
T ss_dssp S-SC--EEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB
T ss_pred c-ce--EEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc
Confidence 2 22 22334445555554 4567777777654 455678899999999999999999999999999999999865432
Q ss_pred E--EeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeE
Q psy13076 167 L--KNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTI 244 (423)
Q Consensus 167 ~--~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i 244 (423)
. ........+.|.+++++|++..++ .+++++.++.|
T Consensus 186 ~~~~~~~~~~~~~v~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~i 223 (318)
T 4ggc_A 186 WVPLQTFTQHQGAVKAVAWCPWQSNVL------------------------------------------ATGGGTSDRHI 223 (318)
T ss_dssp SCCSEEECCCCSCEEEEEECTTSTTEE------------------------------------------EEEECTTTCEE
T ss_pred ccceeeecccCCceEEEEecCCCCcEE------------------------------------------EEEecCCCCEE
Confidence 1 112223345566666666554332 13466778899
Q ss_pred EEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEE--ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEE
Q psy13076 245 AVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG--FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLL 322 (423)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 322 (423)
++|+......... ..+...+..+.|+|+++.+++++ .|+.|++||..+++.+.++. +|.+.|++++|+|+|++|+
T Consensus 224 ~lwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~--gH~~~V~~l~~spdg~~l~ 300 (318)
T 4ggc_A 224 RIWNVCSGACLSA-VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK--GHTSRVLSLTMSPDGATVA 300 (318)
T ss_dssp EEEETTTCCEEEE-EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSCEE
T ss_pred EEEeccccccccc-ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc--CCCCCEEEEEEcCCCCEEE
Confidence 9999766554333 34556788999999999887765 79999999999999888874 6999999999999999999
Q ss_pred EEeCCCcEEEEecCCc
Q psy13076 323 TASGDKTCKLWDIETK 338 (423)
Q Consensus 323 s~s~d~~i~iwd~~~~ 338 (423)
|||.|++|+|||+.+.
T Consensus 301 S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 301 SAAADETLRLWRCFEL 316 (318)
T ss_dssp EEETTTEEEEECCSCC
T ss_pred EEecCCeEEEEECCCC
Confidence 9999999999998654
No 88
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.8e-35 Score=270.42 Aligned_cols=281 Identities=14% Similarity=0.179 Sum_probs=207.6
Q ss_pred eeEEEEeCCEE-EEEec---cceEEEEeccCCCCceeecccccCceeEEEEeCC---CCeEEEecCCCceEEeecCCcc-
Q psy13076 9 QVSCLWQGDYL-LTVSL---SGFISYLDVNNPSTPIRVIKGHNKPITALALSPD---RGTVFTGSHDGFITRWNAKTEY- 80 (423)
Q Consensus 9 ~~~~~~~~~~~-~~~~~---dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~---~~~l~sg~~D~~i~vW~~~~~~- 80 (423)
+++++++|..+ ++++. ||.|++||+.++........+|.++|.+++|+|+ +.+|++|+.|+.|++||++++.
T Consensus 23 ~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 102 (357)
T 3i2n_A 23 DCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM 102 (357)
T ss_dssp EEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS
T ss_pred EEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc
Confidence 44555678555 55555 9999999998644333334489999999999998 6999999999999999999876
Q ss_pred eeecccCCCCCCceEE------eeCCCCCeEEEec-CCeEEEEecCCCc-ccccccCCcc----eEEEEE----ECCCCC
Q psy13076 81 IFATLPRTQRGQPIVL------GGDPKGKNFLYTN-GNSVIIRNIENPA-ISDIYTEHSC----AVNVAK----YSPSGF 144 (423)
Q Consensus 81 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~~~~h~~----~i~~~~----~sp~~~ 144 (423)
....+..+ ......+ .++|+++.++..+ +..+++|+++++. ....+..|.. .+.++. |+|+++
T Consensus 103 ~~~~~~~~-~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 181 (357)
T 3i2n_A 103 PVYSVKGH-KEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER 181 (357)
T ss_dssp CSEEECCC-SSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCC
T ss_pred cEEEEEec-ccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCC
Confidence 44444322 2333333 4578888777654 6789999998876 5666655554 888888 789999
Q ss_pred EEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECC---CCCeEEEEEcCCceeeEEEeecCCcceecccCCCcc
Q psy13076 145 YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP---DNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKP 221 (423)
Q Consensus 145 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (423)
++++++.|+.|++||+++.+.... ..+..+|.+++|+| ++.
T Consensus 182 ~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~--------------------------------- 225 (357)
T 3i2n_A 182 VVCAGYDNGDIKLFDLRNMALRWE---TNIKNGVCSLEFDRKDISMN--------------------------------- 225 (357)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEE---EECSSCEEEEEESCSSSSCC---------------------------------
T ss_pred EEEEEccCCeEEEEECccCceeee---cCCCCceEEEEcCCCCCCCC---------------------------------
Confidence 999999999999999987664322 22345566666666 333
Q ss_pred eeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeee-----eccccccCeEEEEECCCCC-EEEEEEecCeEEEEECCCcc
Q psy13076 222 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM-----TKQEHSRFVQAVRYSPSGS-HFASAGFDGKVFLYDGASAD 295 (423)
Q Consensus 222 i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~-----~~~~~~~~i~~l~~s~~g~-~l~s~s~dg~i~vwd~~~~~ 295 (423)
.+++++.|+.|++|+........ ....|...|.+++|+|+++ ++++++.||.|++||++.+.
T Consensus 226 ------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 226 ------------KLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp ------------EEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred ------------EEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 25667788888888865433222 2337888999999999998 89999999999999987543
Q ss_pred c-------------------eecccccccCCCeEEEEECCCCCeEE-EEeCCCcEEEEecCCcce
Q psy13076 296 L-------------------VSELGNPAHKGGVYAVAWKPDGTQLL-TASGDKTCKLWDIETKSA 340 (423)
Q Consensus 296 ~-------------------~~~~~~~~~~~~i~~l~~~~~~~~l~-s~s~d~~i~iwd~~~~~~ 340 (423)
. +..+ ..|...|.+++|+|++++|+ +++.|+.|++||+.+.+.
T Consensus 294 ~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 294 QRSKKDSEGIEMGVAGSVSLLQNV--TLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp CC--CCTTSCCCCCCCEEEEEEEE--ECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred ccccccCCCCccccccccceeecc--ccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 2 2223 46889999999999999998 899999999999987653
No 89
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=6.5e-35 Score=268.08 Aligned_cols=282 Identities=12% Similarity=0.074 Sum_probs=218.6
Q ss_pred ecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCC
Q psy13076 42 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENP 121 (423)
Q Consensus 42 ~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 121 (423)
...+|.++|.+++|+|++++|++|+.|+.|++||++++....
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~-------------------------------------- 47 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV-------------------------------------- 47 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE--------------------------------------
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccc--------------------------------------
Confidence 456899999999999999999999999999999987642000
Q ss_pred cccccccCCcceEEEEEECCCCC-EEEEEccCCcEEEEEc-CCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCce
Q psy13076 122 AISDIYTEHSCAVNVAKYSPSGF-YIASGDISGKVRIWDT-VNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRER 199 (423)
Q Consensus 122 ~~~~~~~~h~~~i~~~~~sp~~~-~l~s~~~d~~i~vwd~-~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~ 199 (423)
....+.+|...|++++|+|+++ ++++++.|+.|++||+ .+.+. ..+..
T Consensus 48 -~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~---~~~~~-------------------------- 97 (342)
T 1yfq_A 48 -DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF---QALTN-------------------------- 97 (342)
T ss_dssp -EEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE---EECBS--------------------------
T ss_pred -cceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce---Eeccc--------------------------
Confidence 0012236888999999999999 9999999999999998 66542 11222
Q ss_pred eeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC---------ceeeeeccccccCeEEEEE
Q psy13076 200 FGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP---------FKFKMTKQEHSRFVQAVRY 270 (423)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~---------~~~~~~~~~~~~~i~~l~~ 270 (423)
..|...|.+++|+| +. .+++++.|+.|++|+... .+...... +...+.+++|
T Consensus 98 ----------------~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~ 158 (342)
T 1yfq_A 98 ----------------NEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDT 158 (342)
T ss_dssp ----------------CCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEE
T ss_pred ----------------cCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEe
Confidence 00334455555665 33 377888899999998654 33333333 7788999999
Q ss_pred CCCCCEEEEEEecCeEEEEECCC-ccceecccccccCCCeEEEEECC-CCCeEEEEeCCCcEEEEecCCc------ceee
Q psy13076 271 SPSGSHFASAGFDGKVFLYDGAS-ADLVSELGNPAHKGGVYAVAWKP-DGTQLLTASGDKTCKLWDIETK------SAVS 342 (423)
Q Consensus 271 s~~g~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~s~s~d~~i~iwd~~~~------~~i~ 342 (423)
+|++ +++++.|+.|++||.++ +..........|...+.+++|+| ++++|++++.|+.|++|++... +.+.
T Consensus 159 ~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 159 NSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp CSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred cCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence 9987 99999999999999987 55432222235788899999999 9999999999999999999876 5555
Q ss_pred eeeeCce--------eEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccC-CCceeEEEecCCCCeEEEecCC
Q psy13076 343 EFLMGNQ--------VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGH-NKPITALALSPDRGTVFTGSHD 413 (423)
Q Consensus 343 ~~~~~~~--------~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h-~~~v~~i~~sp~~~~l~s~s~D 413 (423)
.+..... .....+.+.+++.+|++++.+|.|++||+.+.. .+..+.+| ..+|++++ |++++|++++.|
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~~~~--~~~~~l~s~s~D 313 (342)
T 1yfq_A 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK-KIKNFAKFNEDSVVKIA--CSDNILCLATSD 313 (342)
T ss_dssp EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE-EEEECCCCSSSEEEEEE--ECSSEEEEEEEC
T ss_pred eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh-HhhhhhcccCCCceEec--CCCCeEEEEecC
Confidence 5543221 134456667789999999999999999998754 46778888 99999999 999999999999
Q ss_pred Cc
Q psy13076 414 GF 415 (423)
Q Consensus 414 ~~ 415 (423)
|+
T Consensus 314 g~ 315 (342)
T 1yfq_A 314 DT 315 (342)
T ss_dssp TH
T ss_pred Cc
Confidence 98
No 90
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-36 Score=283.99 Aligned_cols=309 Identities=13% Similarity=0.090 Sum_probs=232.2
Q ss_pred eEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCC
Q psy13076 10 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQ 89 (423)
Q Consensus 10 ~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~ 89 (423)
|++++||+++|+|+.|++|+ |...+ ..++||.+.|.+++|+|+| .|+++++|+.+...
T Consensus 21 v~~SpDG~~iASas~D~TV~--d~~~~----~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~--------- 78 (588)
T 2j04_A 21 LTWARDGTLYLTTFPDISIG--QPKYA----KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG--------- 78 (588)
T ss_dssp EEECTTSCEEEECSSSEEEE--EECCC----SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC---------
T ss_pred EEECCCCCEEEEEcCCceee--ccccc----ceecCCCccEEEEEECCCC-------CcceEEEEeCCCce---------
Confidence 44445999999999999998 64432 3558999999999999988 56666666543211
Q ss_pred CCCceEEeeCCCCCeEEEecCCeEEEEecCCCccccccc-CCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEE
Q psy13076 90 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYT-EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 168 (423)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~ 168 (423)
.+. +|...|.+++|+|+|+++|+++.||+|++||.+. ....
T Consensus 79 ------------------------------------~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~ 120 (588)
T 2j04_A 79 ------------------------------------LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTN 120 (588)
T ss_dssp ------------------------------------SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEE
T ss_pred ------------------------------------EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeee
Confidence 111 4567899999999999999999999999999543 2222
Q ss_pred eeecCC---CCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcc-------eecc----cCCCcceeEEEEecCCCee
Q psy13076 169 NEFHPI---GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTS-------VGEI----SGQSKPINSCDFKPSRPFR 234 (423)
Q Consensus 169 ~~~~~~---~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~----~~~~~~i~~~~~~~~~~~~ 234 (423)
.. +.. ...+.+++|||||+++++++.+. ...+|....+.. +..+ .+|...|.+++|+|++
T Consensus 121 l~-~~~~~~~~sv~svafSPDG~~LAsgs~DG--tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--- 194 (588)
T 2j04_A 121 LD-SKGNLSSRTYHCFEWNPIESSIVVGNEDG--ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--- 194 (588)
T ss_dssp CC-CSSCSTTTCEEEEEECSSSSCEEEEETTS--EEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---
T ss_pred cc-CCCccccccEEEEEEcCCCCEEEEEcCCC--EEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---
Confidence 12 111 23599999999999999987654 356888776642 3444 5677899999999987
Q ss_pred EEEEeCCCeEEEEcCCCceee---eec-cccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeE
Q psy13076 235 IITGSEDNTIAVFEGPPFKFK---MTK-QEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVY 310 (423)
Q Consensus 235 ~~s~s~d~~i~~~~~~~~~~~---~~~-~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~ 310 (423)
+++++.|+++++|+....... .++ ..|...|.+++|+ |+.+|+++ ++.|++||..+++.... .. +|...+.
T Consensus 195 Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~-~~-gh~~~V~ 269 (588)
T 2j04_A 195 LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL-KT-GSLENFH 269 (588)
T ss_dssp EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE-EC-SCCSCCC
T ss_pred EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE-Ec-CCCceEE
Confidence 778899999999997654421 234 3677889999999 68999887 79999999987766322 21 5899999
Q ss_pred EEEE--CCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEe
Q psy13076 311 AVAW--KPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVI 388 (423)
Q Consensus 311 ~l~~--~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~ 388 (423)
+++| +|+++.|++++.||+ ++|.... +...+++..+++ .++.+++|+..... ...+
T Consensus 270 ~va~~~s~d~~~La~a~edG~-klw~~d~-----------------~~~spd~~l~a~--~d~~v~lW~~~g~~--l~~~ 327 (588)
T 2j04_A 270 IIPLNHEKESTILLMSNKTSY-KVLLEDE-----------------LHVTADNIIAPY--LEKKFKKWSTIWNE--FNNY 327 (588)
T ss_dssp EEEETTCSSCEEEEECSSCEE-EEEESSS-----------------EEEECCCSSHHH--HHHHHHHTTTTTTS--SSSS
T ss_pred EEEeeeCCCCCEEEEEcCCCC-EEEeecc-----------------EEECCCceEEEE--cCCEEEEEECCCCc--eeee
Confidence 9999 999999999999999 9999872 223445554444 38899999875443 2334
Q ss_pred ccCCCceeEEEecCCCCeEEEecC
Q psy13076 389 KGHNKPITALALSPDRGTVFTGSH 412 (423)
Q Consensus 389 ~~h~~~v~~i~~sp~~~~l~s~s~ 412 (423)
.+ ...|.+++|||||+.+|+++.
T Consensus 328 ~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 328 ET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp CC-EEEEEEEEECTTSSEEEEEEE
T ss_pred cc-ceEEEEEEECCCCCEEEEEEe
Confidence 44 677999999999999998873
No 91
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2e-34 Score=267.16 Aligned_cols=293 Identities=17% Similarity=0.187 Sum_probs=221.1
Q ss_pred CCCCceeecccccCceeEEEEeCC---CCeEEEecCCCceEEeecCC-cceeecccCCCCCCceEEeeCCCCCeEEEecC
Q psy13076 35 NPSTPIRVIKGHNKPITALALSPD---RGTVFTGSHDGFITRWNAKT-EYIFATLPRTQRGQPIVLGGDPKGKNFLYTNG 110 (423)
Q Consensus 35 ~~~~~~~~~~gh~~~V~~l~~~~~---~~~l~sg~~D~~i~vW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (423)
.+.+++..+++|.++|++++|+|+ +++|++|+.||.|++||+++ +...
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~---------------------------- 78 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI---------------------------- 78 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE----------------------------
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee----------------------------
Confidence 466778899999999999999999 59999999999999999975 2211
Q ss_pred CeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEE--CCCCC
Q psy13076 111 NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAW--SPDNQ 188 (423)
Q Consensus 111 ~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~--s~~~~ 188 (423)
...+.+|...|++++|+|++++|++++.|+.|++||+.+.+... ...+..+|.+++| +|++
T Consensus 79 -------------~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~- 141 (368)
T 3mmy_A 79 -------------PKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ---IAQHDAPVKTIHWIKAPNY- 141 (368)
T ss_dssp -------------EEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE---EEECSSCEEEEEEEECSSC-
T ss_pred -------------EEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee---eccccCceEEEEEEeCCCC-
Confidence 12345788999999999999999999999999999998765432 2223455555555 3333
Q ss_pred eEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEE
Q psy13076 189 RMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAV 268 (423)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l 268 (423)
. .+++++.|+.|++|+....+.......+. .+.++
T Consensus 142 -------------------------------------------~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~ 176 (368)
T 3mmy_A 142 -------------------------------------------S-CVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCA 176 (368)
T ss_dssp -------------------------------------------E-EEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEE
T ss_pred -------------------------------------------C-EEEEccCCCcEEEEECCCCcEEEEEecCC-CceEE
Confidence 2 36788899999999987665544444443 45555
Q ss_pred EECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCe----EEEEeCCCcEEEEecCCc---cee
Q psy13076 269 RYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQ----LLTASGDKTCKLWDIETK---SAV 341 (423)
Q Consensus 269 ~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~----l~s~s~d~~i~iwd~~~~---~~i 341 (423)
.+. +..+++++.++.+.+|+..............+...+.++++.++... +++++.|+.|++||+... ..+
T Consensus 177 ~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~ 254 (368)
T 3mmy_A 177 DVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDN 254 (368)
T ss_dssp EEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHS
T ss_pred Eec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccc
Confidence 554 45888999999999999987654333322334455667777666555 999999999999999876 334
Q ss_pred eeeeeCcee-----------EeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEe
Q psy13076 342 SEFLMGNQV-----------EDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410 (423)
Q Consensus 342 ~~~~~~~~~-----------~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~ 410 (423)
..+...... ....+.+.+++.+|++++.||.|++||+.+. ..+..+.+|..+|++++|+|++++|+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 333 (368)
T 3mmy_A 255 FTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR-TKLKTSEQLDQPISACCFNHNGNIFAYA 333 (368)
T ss_dssp EEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT-EEEEECCCCSSCEEEEEECTTSSCEEEE
T ss_pred eeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC-cEEEEecCCCCCceEEEECCCCCeEEEE
Confidence 444322211 2445666779999999999999999999875 4567889999999999999999999999
Q ss_pred cCCCcEEEee
Q psy13076 411 SHDGFITRWN 420 (423)
Q Consensus 411 s~D~~i~~W~ 420 (423)
|.|+..+.|+
T Consensus 334 s~d~~~~~~~ 343 (368)
T 3mmy_A 334 SSYDWSKGHE 343 (368)
T ss_dssp ECCCSTTCGG
T ss_pred eccccccccc
Confidence 9988665554
No 92
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-34 Score=268.38 Aligned_cols=259 Identities=19% Similarity=0.281 Sum_probs=201.8
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccC-CCCceeecccccCceeEEEEeCC--CCeEEEecCCCceEEeecCCcceeecc
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNN-PSTPIRVIKGHNKPITALALSPD--RGTVFTGSHDGFITRWNAKTEYIFATL 85 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~-~~~~~~~~~gh~~~V~~l~~~~~--~~~l~sg~~D~~i~vW~~~~~~~~~~~ 85 (423)
++++++||++||+++.||.|++||+.. ..+++..+.+|.++|.+++|+++ +++|++|+.|++|++||+++++..
T Consensus 16 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--- 92 (379)
T 3jrp_A 16 DAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS--- 92 (379)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEE---
T ss_pred EEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCcee---
Confidence 455667999999999999999999973 23456788999999999999987 899999999999999998765311
Q ss_pred cCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCC--CCEEEEEccCCcEEEEEcCCC
Q psy13076 86 PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS--GFYIASGDISGKVRIWDTVNK 163 (423)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~~~d~~i~vwd~~~~ 163 (423)
....+.+|...|.+++|+|+ +.++++++.|+.|++||+.+.
T Consensus 93 -------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 135 (379)
T 3jrp_A 93 -------------------------------------QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN 135 (379)
T ss_dssp -------------------------------------EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTT
T ss_pred -------------------------------------EeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCC
Confidence 11134568889999999999 999999999999999999876
Q ss_pred ceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCe
Q psy13076 164 EHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNT 243 (423)
Q Consensus 164 ~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~ 243 (423)
.......+..+..+|.+++|+|........ ....+++. .+++++.|+.
T Consensus 136 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------------------------------~~~~~~~~-~l~~~~~dg~ 183 (379)
T 3jrp_A 136 GTTSPIIIDAHAIGVNSASWAPATIEEDGE-------------------------------HNGTKESR-KFVTGGADNL 183 (379)
T ss_dssp SCCCEEEEECCTTCEEEEEECCCC-----------------------------------------CTTC-EEEEEETTSC
T ss_pred CceeeEEecCCCCceEEEEEcCcccccccc-------------------------------ccCCCCCC-EEEEEeCCCe
Confidence 544334445566788888888864321110 00122333 4889999999
Q ss_pred EEEEcCCCc----eeeeeccccccCeEEEEECCC---CCEEEEEEecCeEEEEECCCccc---eecccccccCCCeEEEE
Q psy13076 244 IAVFEGPPF----KFKMTKQEHSRFVQAVRYSPS---GSHFASAGFDGKVFLYDGASADL---VSELGNPAHKGGVYAVA 313 (423)
Q Consensus 244 i~~~~~~~~----~~~~~~~~~~~~i~~l~~s~~---g~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~~~i~~l~ 313 (423)
|++|+.... ........|...|.+++|+|+ +++|++++.||.|++||..++.. ...+....|...+.+++
T Consensus 184 i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 263 (379)
T 3jrp_A 184 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS 263 (379)
T ss_dssp EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEE
T ss_pred EEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEE
Confidence 999986432 344566788999999999999 89999999999999999987642 22222235788999999
Q ss_pred ECCCCCeEEEEeCCCcEEEEecCCcc
Q psy13076 314 WKPDGTQLLTASGDKTCKLWDIETKS 339 (423)
Q Consensus 314 ~~~~~~~l~s~s~d~~i~iwd~~~~~ 339 (423)
|+|++++|++++.|+.|++||+....
T Consensus 264 ~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 264 WSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp ECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred EcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 99999999999999999999998544
No 93
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.1e-33 Score=260.33 Aligned_cols=256 Identities=20% Similarity=0.195 Sum_probs=199.5
Q ss_pred cccccCCcceEEEEEE-----CC-CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC
Q psy13076 124 SDIYTEHSCAVNVAKY-----SP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR 197 (423)
Q Consensus 124 ~~~~~~h~~~i~~~~~-----sp-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~ 197 (423)
...+.+|...|++++| +| ++++|+||+.|++|++||+.+.+....
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~----------------------------- 64 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY----------------------------- 64 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB-----------------------------
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc-----------------------------
Confidence 4567899999999999 77 999999999999999999865321000
Q ss_pred ceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEE
Q psy13076 198 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHF 277 (423)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 277 (423)
.+.....+.+|...|.+++|+|++.+ +++++.|++|++||....+....+..|...|.+++|+|++++|
T Consensus 65 ----------~~~~~~~l~~h~~~V~~~~~~~~~~~-l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l 133 (343)
T 2xzm_R 65 ----------FGIPHKALTGHNHFVSDLALSQENCF-AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI 133 (343)
T ss_dssp ----------SEEEEEEECCCSSCEEEEEECSSTTE-EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEE
T ss_pred ----------cccccchhccCCCceEEEEECCCCCE-EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEE
Confidence 00011234456677888888887765 7899999999999998877777888999999999999999999
Q ss_pred EEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCC----------CeEEEEeCCCcEEEEecCCcceeeeeeeC
Q psy13076 278 ASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDG----------TQLLTASGDKTCKLWDIETKSAVSEFLMG 347 (423)
Q Consensus 278 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~----------~~l~s~s~d~~i~iwd~~~~~~i~~~~~~ 347 (423)
++++.|+.|++||..............|...|.+++|+|++ ++|++++.|++|++||.. .+....+. .
T Consensus 134 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~-~ 211 (343)
T 2xzm_R 134 LSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFK-A 211 (343)
T ss_dssp EEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEE-C
T ss_pred EEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEc-C
Confidence 99999999999998744333222234688899999999987 789999999999999953 44444433 2
Q ss_pred ceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076 348 NQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423 (423)
Q Consensus 348 ~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~ 423 (423)
+......+.+.++|.+|++++.|+.|++||+.....+...+ .|...|++++|+|++++|+ ++.|+.|++|++.+
T Consensus 212 h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~ 285 (343)
T 2xzm_R 212 HESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMT 285 (343)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSS
T ss_pred ccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCC
Confidence 33345566777899999999999999999996555444443 3456799999999998776 45688899999753
No 94
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.4e-33 Score=267.56 Aligned_cols=279 Identities=22% Similarity=0.400 Sum_probs=224.4
Q ss_pred ceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEec
Q psy13076 39 PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNI 118 (423)
Q Consensus 39 ~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 118 (423)
+...++||.+.|.+ ++.+++++|++|+.||+|++||+++++...
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~----------------------------------- 153 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR----------------------------------- 153 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE-----------------------------------
T ss_pred eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE-----------------------------------
Confidence 45678999987643 244568899999999999999998764432
Q ss_pred CCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCc
Q psy13076 119 ENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE 198 (423)
Q Consensus 119 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~ 198 (423)
.+.+|...|.++.|+ +.++++++.|++|++||+.+++.... +..
T Consensus 154 -------~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~------------------------- 197 (445)
T 2ovr_B 154 -------TLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHT--LYG------------------------- 197 (445)
T ss_dssp -------ECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEE--ECC-------------------------
T ss_pred -------EEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEE--ECC-------------------------
Confidence 345788899999997 56999999999999999977654321 222
Q ss_pred eeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEE
Q psy13076 199 RFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFA 278 (423)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 278 (423)
|...|.++.+++. .+++++.|+.|++|+....+.......|...+.++++ ++++++
T Consensus 198 -------------------h~~~v~~~~~~~~---~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~ 253 (445)
T 2ovr_B 198 -------------------HTSTVRCMHLHEK---RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVV 253 (445)
T ss_dssp -------------------CSSCEEEEEEETT---EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEE
T ss_pred -------------------CCCcEEEEEecCC---EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEE
Confidence 2334444444322 3888999999999998887777778889999999999 788999
Q ss_pred EEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEE
Q psy13076 279 SAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCL 358 (423)
Q Consensus 279 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~ 358 (423)
+|+.||.|++||.++++.+..+. .|...|.+++| ++++|++++.|++|++||+++++.+..+..... ......
T Consensus 254 ~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~v~~~~ 326 (445)
T 2ovr_B 254 SGAYDFMVKVWDPETETCLHTLQ--GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS---LTSGME 326 (445)
T ss_dssp EEETTSCEEEEEGGGTEEEEEEC--CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS---CEEEEE
T ss_pred EEcCCCEEEEEECCCCcEeEEec--CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc---cEEEEE
Confidence 99999999999999988877764 68899999999 788999999999999999999988877643221 122344
Q ss_pred ecCcEEEEEeCCCcEEEEecCCCCCceEEecc---CCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076 359 WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKG---HNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423 (423)
Q Consensus 359 ~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~---h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~ 423 (423)
+++..+++++.+|.+++||+.+.. ++..+.+ |..+|++++|+ +++|++|+.||.|++||+.+
T Consensus 327 ~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 327 LKDNILVSGNADSTVKIWDIKTGQ-CLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp EETTEEEEEETTSCEEEEETTTCC-EEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred EeCCEEEEEeCCCeEEEEECCCCc-EEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCC
Confidence 588999999999999999998754 4566665 89999999996 57999999999999999764
No 95
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.5e-34 Score=265.81 Aligned_cols=246 Identities=11% Similarity=0.053 Sum_probs=182.6
Q ss_pred ceeeEEEEeCCEEEEEe-----------ccceEEEEeccCCCCceee--------cccccCceeEEEEeCCCCeEE--Ee
Q psy13076 7 DQQVSCLWQGDYLLTVS-----------LSGFISYLDVNNPSTPIRV--------IKGHNKPITALALSPDRGTVF--TG 65 (423)
Q Consensus 7 ~~~~~~~~~~~~~~~~~-----------~dg~i~~~d~~~~~~~~~~--------~~gh~~~V~~l~~~~~~~~l~--sg 65 (423)
+.+.++.++++.++++. .|+.+|+|++......... ..++...+.+++|+|||++|+ |+
T Consensus 74 ~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~ 153 (365)
T 4h5i_A 74 DSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASS 153 (365)
T ss_dssp CCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEES
T ss_pred CceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEEC
Confidence 44567788999888764 5788999998754433221 124556689999999999875 56
Q ss_pred cCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCE
Q psy13076 66 SHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFY 145 (423)
Q Consensus 66 ~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~ 145 (423)
+.|++||+||+++++....+ .|...|.+++|+|||++
T Consensus 154 ~~d~~i~iwd~~~~~~~~~~-------------------------------------------~~~~~V~~v~fspdg~~ 190 (365)
T 4h5i_A 154 KVPAIMRIIDPSDLTEKFEI-------------------------------------------ETRGEVKDLHFSTDGKV 190 (365)
T ss_dssp CSSCEEEEEETTTTEEEEEE-------------------------------------------ECSSCCCEEEECTTSSE
T ss_pred CCCCEEEEeECCCCcEEEEe-------------------------------------------CCCCceEEEEEccCCce
Confidence 68999999999886543322 25567899999999999
Q ss_pred EEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEE
Q psy13076 146 IASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSC 225 (423)
Q Consensus 146 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 225 (423)
+++++.+ .+++|+..+++.........+...|.+++|+|+++.+++++.+.....
T Consensus 191 l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~------------------------ 245 (365)
T 4h5i_A 191 VAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGI------------------------ 245 (365)
T ss_dssp EEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCE------------------------
T ss_pred EEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCccee------------------------
Confidence 9999854 566777666655444334445566777888887777666543321111
Q ss_pred EEecCCCeeEEEEeCCCeEEEEcCCCce----eeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccc
Q psy13076 226 DFKPSRPFRIITGSEDNTIAVFEGPPFK----FKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG 301 (423)
Q Consensus 226 ~~~~~~~~~~~s~s~d~~i~~~~~~~~~----~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~ 301 (423)
.++.|+..... .......|...|++++|+|+|++||+|+.|+.|++||.++++.+.++.
T Consensus 246 -----------------~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~ 308 (365)
T 4h5i_A 246 -----------------VLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK 308 (365)
T ss_dssp -----------------EEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET
T ss_pred -----------------EEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec
Confidence 23444432221 123455778889999999999999999999999999999998877653
Q ss_pred ccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076 302 NPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK 338 (423)
Q Consensus 302 ~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~ 338 (423)
.+|...|++++|+|||++|+|+|.|++|||||+...
T Consensus 309 -~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 309 -QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp -TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred -CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 379999999999999999999999999999999654
No 96
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=7.1e-34 Score=286.12 Aligned_cols=217 Identities=26% Similarity=0.359 Sum_probs=172.2
Q ss_pred eeecccccCceeEEEEeCCC-CeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEec
Q psy13076 40 IRVIKGHNKPITALALSPDR-GTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNI 118 (423)
Q Consensus 40 ~~~~~gh~~~V~~l~~~~~~-~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 118 (423)
...+++|.++|++|+|+|++ ++|+|||.|++|++||+.+....
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~------------------------------------ 418 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA------------------------------------ 418 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC------------------------------------
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc------------------------------------
Confidence 34688999999999999875 68999999999999998753110
Q ss_pred CCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCc
Q psy13076 119 ENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE 198 (423)
Q Consensus 119 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~ 198 (423)
.+.....+.+|...|.+++|+|++++|++|+.|++|++||+.++.... .+..+..+|.+++|+|++
T Consensus 419 -~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~--~~~~h~~~v~~~~~s~~~----------- 484 (694)
T 3dm0_A 419 -YGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR--RFVGHTKDVLSVAFSLDN----------- 484 (694)
T ss_dssp -SCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--EEECCSSCEEEEEECTTS-----------
T ss_pred -cccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCccee--EEeCCCCCEEEEEEeCCC-----------
Confidence 011223467899999999999999999999999999999997765432 233344555555555544
Q ss_pred eeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceee---eeccccccCeEEEEECCCC-
Q psy13076 199 RFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK---MTKQEHSRFVQAVRYSPSG- 274 (423)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~---~~~~~~~~~i~~l~~s~~g- 274 (423)
.. +++++.|++|++|+....... .....|...|.+++|+|++
T Consensus 485 ---------------------------------~~-l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 530 (694)
T 3dm0_A 485 ---------------------------------RQ-IVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL 530 (694)
T ss_dssp ---------------------------------SC-EEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred ---------------------------------CE-EEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence 32 678889999999986543221 2234688889999999987
Q ss_pred -CEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceee
Q psy13076 275 -SHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVS 342 (423)
Q Consensus 275 -~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~ 342 (423)
.++++++.|+.|++||+++++....+. +|.+.|.+++|+|++++|++++.|++|++||+.+++.+.
T Consensus 531 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~--~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~ 597 (694)
T 3dm0_A 531 QPTIVSASWDKTVKVWNLSNCKLRSTLA--GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY 597 (694)
T ss_dssp SCEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEE
T ss_pred cceEEEEeCCCeEEEEECCCCcEEEEEc--CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence 589999999999999999888777663 689999999999999999999999999999998876543
No 97
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-34 Score=273.19 Aligned_cols=305 Identities=13% Similarity=0.116 Sum_probs=231.4
Q ss_pred eeeEEEE-eCCEEEEEeccceEEEEeccC---CC--CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecC---C
Q psy13076 8 QQVSCLW-QGDYLLTVSLSGFISYLDVNN---PS--TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK---T 78 (423)
Q Consensus 8 ~~~~~~~-~~~~~~~~~~dg~i~~~d~~~---~~--~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~---~ 78 (423)
.++++++ ||.+||+|+.||.|++||+.. .. .+...+ +|.++|.+++|+|++++|++|+.|++|++||++ +
T Consensus 67 ~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~ 145 (437)
T 3gre_A 67 TSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQ 145 (437)
T ss_dssp EEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEE
T ss_pred EEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccC
Confidence 3566778 899999999999999999864 22 112222 599999999999999999999999999999995 4
Q ss_pred cceeecccC--------C---CCCCceEE--eeCCCCCeEEEe-cCCeEEEEecCCCcccccccC--CcceEEEEEECCC
Q psy13076 79 EYIFATLPR--------T---QRGQPIVL--GGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTE--HSCAVNVAKYSPS 142 (423)
Q Consensus 79 ~~~~~~~~~--------~---~~~~~~~~--~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~--h~~~i~~~~~sp~ 142 (423)
++....+.. . .......+ ..++++..++.. .+..+++|++++++....+.+ |...|++++|+|+
T Consensus 146 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~ 225 (437)
T 3gre_A 146 ESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEE 225 (437)
T ss_dssp TTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTT
T ss_pred CceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCC
Confidence 433332211 0 11222222 256777777665 467999999999999998988 8999999999999
Q ss_pred CCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECC----CCCeEEEEEcCCceeeEEEeecCCcceecccCC
Q psy13076 143 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP----DNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ 218 (423)
Q Consensus 143 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (423)
+++|++|+.|++|++||+++.+....... .+..+|.+++|+| ++..+++++ .+....+|+..++..+..+..+
T Consensus 226 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~ 302 (437)
T 3gre_A 226 CCVLILGTTRGIIDIWDIRFNVLIRSWSF-GDHAPITHVEVCQFYGKNSVIVVGGS--SKTFLTIWNFVKGHCQYAFINS 302 (437)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEEEBC-TTCEEEEEEEECTTTCTTEEEEEEES--TTEEEEEEETTTTEEEEEEESS
T ss_pred CCEEEEEcCCCeEEEEEcCCccEEEEEec-CCCCceEEEEeccccCCCccEEEEEc--CCCcEEEEEcCCCcEEEEEEcC
Confidence 99999999999999999988765543332 3456899997765 455555443 3455678888888888888888
Q ss_pred CcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCcccee
Q psy13076 219 SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVS 298 (423)
Q Consensus 219 ~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~ 298 (423)
...+..+.|+|.+... .+. ......|...|++++|+ ++++|++|+.||.|++||+.+++...
T Consensus 303 ~~~~~~~~~~~~~~~l-----~~~------------~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~ 364 (437)
T 3gre_A 303 DEQPSMEHFLPIEKGL-----EEL------------NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK 364 (437)
T ss_dssp SSCCCGGGGSCBCSSG-----GGC------------CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred CCCCccceeccccccc-----ccc------------eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence 8888877788765431 000 01112377889999999 78899999999999999999888765
Q ss_pred ccccc-----------------------------------ccCCCeEEEEECCC--CCeEEEEeCCCcEEEEe
Q psy13076 299 ELGNP-----------------------------------AHKGGVYAVAWKPD--GTQLLTASGDKTCKLWD 334 (423)
Q Consensus 299 ~~~~~-----------------------------------~~~~~i~~l~~~~~--~~~l~s~s~d~~i~iwd 334 (423)
.+... .|...|.+++|+++ +.+|++|+.||.|+||+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 365 AVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 55321 28899999999998 78999999999999995
No 98
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.3e-33 Score=259.31 Aligned_cols=282 Identities=13% Similarity=0.159 Sum_probs=213.5
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccCCC--CceeecccccCceeEEEEeCCCC-eEEEecCCCceEEeec-CCcceeec
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNNPS--TPIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNA-KTEYIFAT 84 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~--~~~~~~~gh~~~V~~l~~~~~~~-~l~sg~~D~~i~vW~~-~~~~~~~~ 84 (423)
.++++++|.+|++++.||.|++||+.... .+...+.+|.++|.+++|+|+++ +|++|+.||.|++||+ +++..
T Consensus 16 ~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~--- 92 (342)
T 1yfq_A 16 DIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF--- 92 (342)
T ss_dssp EEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE---
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce---
Confidence 45556699999999999999999997643 13456679999999999999999 9999999999999999 76432
Q ss_pred ccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccC--CcceEEEEEECCCCCEEEEEccCCcEEEEEcCC
Q psy13076 85 LPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTE--HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 162 (423)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~ 162 (423)
..+.+ |...|.+++|+| +.++++++.|+.|++||+.+
T Consensus 93 ----------------------------------------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~ 131 (342)
T 1yfq_A 93 ----------------------------------------QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRN 131 (342)
T ss_dssp ----------------------------------------EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHH
T ss_pred ----------------------------------------EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccc
Confidence 12345 888999999999 99999999999999999864
Q ss_pred CceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCC
Q psy13076 163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN 242 (423)
Q Consensus 163 ~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~ 242 (423)
..... +. . .+..+..+. +...+.+++|+|+. +++++.|+
T Consensus 132 ~~~~~----------~~-~--------------------------~~~~~~~~~-~~~~v~~~~~~~~~---l~~~~~d~ 170 (342)
T 1yfq_A 132 YGDGV----------IA-V--------------------------KNLNSNNTK-VKNKIFTMDTNSSR---LIVGMNNS 170 (342)
T ss_dssp HTTBC----------EE-E--------------------------EESCSSSSS-SCCCEEEEEECSSE---EEEEESTT
T ss_pred ccccc----------cc-c--------------------------cCCeeeEEe-eCCceEEEEecCCc---EEEEeCCC
Confidence 11000 00 0 000001111 33456666676654 77888999
Q ss_pred eEEEEcCCC-ce--eeeeccccccCeEEEEECC-CCCEEEEEEecCeEEEEECCCc------cceeccccc-------cc
Q psy13076 243 TIAVFEGPP-FK--FKMTKQEHSRFVQAVRYSP-SGSHFASAGFDGKVFLYDGASA------DLVSELGNP-------AH 305 (423)
Q Consensus 243 ~i~~~~~~~-~~--~~~~~~~~~~~i~~l~~s~-~g~~l~s~s~dg~i~vwd~~~~------~~~~~~~~~-------~~ 305 (423)
.|++|+... .. .......+...+.+++|+| +++++++++.||.|++|+.... +....+... .|
T Consensus 171 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (342)
T 1yfq_A 171 QVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL 250 (342)
T ss_dssp EEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSS
T ss_pred eEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccccccc
Confidence 999999776 32 3334456778899999999 9999999999999999999776 444444321 12
Q ss_pred CCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCc-EEEEe
Q psy13076 306 KGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGF-ISYLD 377 (423)
Q Consensus 306 ~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~-i~~~~ 377 (423)
...|.+++|+|++++|++++.|+.|++||+.+++.+..+...+......+. ++|.+|++++.||. .+.+.
T Consensus 251 ~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 251 AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred ceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 448999999999999999999999999999999888776543123333444 89999999999998 54444
No 99
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-33 Score=267.60 Aligned_cols=325 Identities=13% Similarity=0.075 Sum_probs=218.2
Q ss_pred cCceeEEEEeCCCCeEEEecCCCceEEeecCCcc---eeecccCCCC-CCceEEe-eCCCCCeEEEecC----------C
Q psy13076 47 NKPITALALSPDRGTVFTGSHDGFITRWNAKTEY---IFATLPRTQR-GQPIVLG-GDPKGKNFLYTNG----------N 111 (423)
Q Consensus 47 ~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~---~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~----------~ 111 (423)
..|+.+++|+|+|++|+++ .++.|++||+++++ .+........ ....... ....+..+..... .
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 4689999999999966655 57899999999987 5444432111 0000000 0000000000000 0
Q ss_pred eEEEEecCCCcccccccCCcceEEEEEECCCCCEE-EEEccCCcEEEEEcC--CCceeEEeeecCCCCCeeEEEECCCCC
Q psy13076 112 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTV--NKEHILKNEFHPIGGPIKDIAWSPDNQ 188 (423)
Q Consensus 112 ~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l-~s~~~d~~i~vwd~~--~~~~~~~~~~~~~~~~v~~v~~s~~~~ 188 (423)
.+.-.............+|.+.|++++|+|++++| ++++.|++|++||+. +++.......+.+...|.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 00000000011112345788899999999999996 899999999999997 555443332223345566666666655
Q ss_pred eEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeee----eccccccC
Q psy13076 189 RMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM----TKQEHSRF 264 (423)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~----~~~~~~~~ 264 (423)
. +++++.++.+++|+........ .+..|...
T Consensus 163 ~---------------------------------------------l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~ 197 (450)
T 2vdu_B 163 T---------------------------------------------VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSM 197 (450)
T ss_dssp E---------------------------------------------EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSC
T ss_pred E---------------------------------------------EEEEeCCCcEEEEecCCcccccccceeeecccCc
Confidence 4 4556677788888765443322 55678889
Q ss_pred eEEEEECCC---CCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCccee
Q psy13076 265 VQAVRYSPS---GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAV 341 (423)
Q Consensus 265 i~~l~~s~~---g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i 341 (423)
|.+++|+|+ +++|++|+.|+.|++||+.+++.+..+. .+|...|.+++|+ ++++|++++.|++|++||+.+++++
T Consensus 198 v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~ 275 (450)
T 2vdu_B 198 LTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL-FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNL 275 (450)
T ss_dssp EEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC-CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEE
T ss_pred eEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee-cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEe
Confidence 999999999 9999999999999999999888776533 3688999999999 9999999999999999999999887
Q ss_pred eeeeeCc------------------------eeEeeEEEEEecCcEEEEEe-CCCcEEEEec--CCCC--CceEEeccCC
Q psy13076 342 SEFLMGN------------------------QVEDQQVSCLWQGDYLLTVS-LSGFISYLDV--NNPS--TPIRVIKGHN 392 (423)
Q Consensus 342 ~~~~~~~------------------------~~~~~~~~~~~~g~~l~~~~-~~~~i~~~~~--~~~~--~~~~~~~~h~ 392 (423)
..+.... ......+...+++.++++++ .++.|++|++ .... ..+..+.+|
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~- 354 (450)
T 2vdu_B 276 STFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP- 354 (450)
T ss_dssp EEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-
T ss_pred eeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-
Confidence 7765321 12233455667899999988 8999999999 3321 345567788
Q ss_pred CceeEEEecCCCCeEEEe-cC------CCcEEEeeC
Q psy13076 393 KPITALALSPDRGTVFTG-SH------DGFITRWNA 421 (423)
Q Consensus 393 ~~v~~i~~sp~~~~l~s~-s~------D~~i~~W~~ 421 (423)
..|++++|+|++ ++++. +. +..|++|.+
T Consensus 355 ~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 355 YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEE
T ss_pred CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEE
Confidence 889999999964 55444 43 566888864
No 100
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=264.79 Aligned_cols=332 Identities=16% Similarity=0.183 Sum_probs=219.3
Q ss_pred eeEEEE-eCCEEEEEeccceEEEEeccCCCCceeec-------------ccccCceeEEEEeC-CCCeEEEecCCCceEE
Q psy13076 9 QVSCLW-QGDYLLTVSLSGFISYLDVNNPSTPIRVI-------------KGHNKPITALALSP-DRGTVFTGSHDGFITR 73 (423)
Q Consensus 9 ~~~~~~-~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-------------~gh~~~V~~l~~~~-~~~~l~sg~~D~~i~v 73 (423)
++++++ +|++||+++.||.|++||+.+... ...+ .+|.++|.+++|+| ++.+|++++.|+.|++
T Consensus 48 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i 126 (408)
T 4a11_B 48 TLDIEPVEGRYMLSGGSDGVIVLYDLENSSR-QSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKV 126 (408)
T ss_dssp EEEECTTTCCEEEEEETTSCEEEEECCCCSS-SSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEE
T ss_pred EEEEecCCCCEEEEEcCCCeEEEEECCCCcc-cceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEE
Confidence 456666 899999999999999999986443 3233 36999999999999 7789999999999999
Q ss_pred eecCCcceeecccCCCCCCceEEeeCC---CCCeEEE-ecCCeEEEEecCCCcccccccCCcceEEEEEECCCCC-EEEE
Q psy13076 74 WNAKTEYIFATLPRTQRGQPIVLGGDP---KGKNFLY-TNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGF-YIAS 148 (423)
Q Consensus 74 W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~s 148 (423)
||+.+++....+.. ......+.+.+ ++..++. ..+..+.+|+++++.....+.+|...|.+++|+|++. ++++
T Consensus 127 wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~ 204 (408)
T 4a11_B 127 WDTNTLQTADVFNF--EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILAT 204 (408)
T ss_dssp EETTTTEEEEEEEC--SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEE
T ss_pred eeCCCCccceeccC--CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEE
Confidence 99999877666543 22333444444 3345555 4567899999999999999999999999999999998 5899
Q ss_pred EccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEe
Q psy13076 149 GDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFK 228 (423)
Q Consensus 149 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 228 (423)
++.|+.|++||+.+...... .+..... . ...........+...|.+++|+
T Consensus 205 ~~~dg~i~i~d~~~~~~~~~-~~~~~~~-----------~------------------~~~~~~~~~~~~~~~v~~~~~~ 254 (408)
T 4a11_B 205 ASADSRVKLWDVRRASGCLI-TLDQHNG-----------K------------------KSQAVESANTAHNGKVNGLCFT 254 (408)
T ss_dssp EETTSCEEEEETTCSSCCSE-ECCTTTT-----------C------------------SCCCTTTSSCSCSSCEEEEEEC
T ss_pred EcCCCcEEEEECCCCCcccc-ccccccc-----------c------------------cceeeccccccccCceeEEEEc
Confidence 99999999999976542211 0100000 0 0001112334677788899999
Q ss_pred cCCCeeEEEEeCCCeEEEEcCCCceeeeeccc-----cccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccccc
Q psy13076 229 PSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE-----HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP 303 (423)
Q Consensus 229 ~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~-----~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 303 (423)
|++.+ +++++.|+.+++|+....+....... ....+........+..+++++.|+.|++||..+++.+..+.
T Consensus 255 ~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-- 331 (408)
T 4a11_B 255 SDGLH-LLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK-- 331 (408)
T ss_dssp TTSSE-EEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC--
T ss_pred CCCCE-EEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec--
Confidence 98775 88899999999999765543322211 11122222333445677778899999999999999887774
Q ss_pred ccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecC
Q psy13076 304 AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVN 379 (423)
Q Consensus 304 ~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~ 379 (423)
+|...|.+++|+|++++|++++.|+.|++||+.+++.+......... ..+.. ...........++.+++|+..
T Consensus 332 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 332 GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK--SQLNP-AFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------------------------------------------
T ss_pred cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec--ccccc-ccceeecccCccCceeecCCc
Confidence 68899999999999999999999999999999998776543221111 11111 123334456677888888653
No 101
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=8.7e-34 Score=262.24 Aligned_cols=312 Identities=15% Similarity=0.202 Sum_probs=210.2
Q ss_pred EeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecC
Q psy13076 31 LDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNG 110 (423)
Q Consensus 31 ~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (423)
|++.+ .+++..+++|.++|.+++|+|++++|++|+.|+ +++||+++.......
T Consensus 4 ~s~~~-~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~------------------------- 56 (355)
T 3vu4_A 4 GSMIT-RNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ------------------------- 56 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE-------------------------
T ss_pred ccccc-cCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee-------------------------
Confidence 44443 456667799999999999999999999998775 889998765432111
Q ss_pred CeEEEEecCCCcccccccCCcceEEEEEECCCCCEE-EEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCe
Q psy13076 111 NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 189 (423)
Q Consensus 111 ~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 189 (423)
+...+..+.+.++++++ ++++.|++|++||..+++.+.... ...+|.+++|+++.
T Consensus 57 -------------------~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~---~~~~v~~v~~~~~~-- 112 (355)
T 3vu4_A 57 -------------------EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK---VDAPVKDLFLSREF-- 112 (355)
T ss_dssp -------------------ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE---CSSCEEEEEECSSE--
T ss_pred -------------------ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE---CCCceEEEEEcCCE--
Confidence 00124566788877777 567888999999998887665443 34689999999874
Q ss_pred EEEEEcCCceeeEEEeecCC-cceecccCCCcceeEEEEecCCCeeEEE-EeCCCeEEEEcCCCce--------------
Q psy13076 190 MVVVGEGRERFGHVFMSETG-TSVGEISGQSKPINSCDFKPSRPFRIIT-GSEDNTIAVFEGPPFK-------------- 253 (423)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~s-~s~d~~i~~~~~~~~~-------------- 253 (423)
++++.+ ....+|+.... +.+..+.. +...+++++ .+.+++ ++.++.|++||.....
T Consensus 113 ~~~~~~---~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~ 184 (355)
T 3vu4_A 113 IVVSYG---DVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAI 184 (355)
T ss_dssp EEEEET---TEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC----------------
T ss_pred EEEEEc---CEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcccccccccccccc
Confidence 344432 23567777666 55544444 455566777 343333 6899999999987533
Q ss_pred --eeeeccccccCeEEEEECCCCCEEEEEEecCe-EEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcE
Q psy13076 254 --FKMTKQEHSRFVQAVRYSPSGSHFASAGFDGK-VFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTC 330 (423)
Q Consensus 254 --~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i 330 (423)
....+..|...|++++|+|+|++|++|+.||+ |++||.++++.+..+....|...|.+++|+|++++|++++.|++|
T Consensus 185 ~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v 264 (355)
T 3vu4_A 185 LGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTL 264 (355)
T ss_dssp --CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEE
T ss_pred CcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEE
Confidence 14567789999999999999999999999998 999999999988877532388999999999999999999999999
Q ss_pred EEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEe
Q psy13076 331 KLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410 (423)
Q Consensus 331 ~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~ 410 (423)
++||++............. ..+ .+ .+. .|. .........+..+...++|+||++.|+++
T Consensus 265 ~iw~~~~~~~~~~~~~~~~-------~~~--~~-----~~~---~~~----~~~~~~~~~~~~~~~~~a~~~d~~~l~~~ 323 (355)
T 3vu4_A 265 HVFEIFNDQDNKRHALKGW-------INM--KY-----FQS---EWS----LCNFKLSVDKHVRGCKIAWISESSLVVVW 323 (355)
T ss_dssp EEEESSCCSCCCSEETTTT-------EEC--CC-----CCC---SSC----SEEEECCCCTTCCCCEEEESSSSEEEEEE
T ss_pred EEEEccCCCCcccccccce-------eec--cc-----ccc---ccc----eeEEEeccCCCCCceEEEEeCCCCEEEEE
Confidence 9999987542211110000 000 00 000 000 00001112233456779999999999999
Q ss_pred cCCCcEEEeeCC
Q psy13076 411 SHDGFITRWNAK 422 (423)
Q Consensus 411 s~D~~i~~W~~~ 422 (423)
+.||.+++|++.
T Consensus 324 ~~dg~~~~~~~~ 335 (355)
T 3vu4_A 324 PHTRMIETFKVV 335 (355)
T ss_dssp TTTTEEEEEEEE
T ss_pred eCCCeEEEEEEE
Confidence 999999999863
No 102
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=7.3e-34 Score=260.93 Aligned_cols=267 Identities=17% Similarity=0.281 Sum_probs=201.1
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccCCC---CceeecccccCceeEEEEeC--CCCeEEEecCCCceEEeecCCcceee
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNNPS---TPIRVIKGHNKPITALALSP--DRGTVFTGSHDGFITRWNAKTEYIFA 83 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~---~~~~~~~gh~~~V~~l~~~~--~~~~l~sg~~D~~i~vW~~~~~~~~~ 83 (423)
+++++++|++||+++.||.|++||+.+.. ++...+++|.++|.+++|+| ++++|++|+.|++|++||++++....
T Consensus 16 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~ 95 (351)
T 3f3f_A 16 DVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEEC 95 (351)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTT
T ss_pred EEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccc
Confidence 45555699999999999999999997644 35567789999999999999 58999999999999999998653210
Q ss_pred cccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCC--CCEEEEEccCCcEEEEEcC
Q psy13076 84 TLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS--GFYIASGDISGKVRIWDTV 161 (423)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~~~d~~i~vwd~~ 161 (423)
.. ...+....+.+|...|.+++|+|+ +.++++++.|+.|++||+.
T Consensus 96 ~~---------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 142 (351)
T 3f3f_A 96 SG---------------------------------RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142 (351)
T ss_dssp SS---------------------------------CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred cc---------------------------------cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence 00 000122345679999999999999 9999999999999999998
Q ss_pred CCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecC--CCeeEEEEe
Q psy13076 162 NKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPS--RPFRIITGS 239 (423)
Q Consensus 162 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~s~s 239 (423)
+.+........ ..+..+.+ ....+...+.++.|+|. ....+++++
T Consensus 143 ~~~~~~~~~~~---~~~~~~~~------------------------------~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 189 (351)
T 3f3f_A 143 EPSDLRSWTLT---SEMKVLSI------------------------------PPANHLQSDFCLSWCPSRFSPEKLAVSA 189 (351)
T ss_dssp STTCTTCCEEE---EEEESCSC------------------------------CCSSCSCCCEEEEECCCSSSCCEEEEEE
T ss_pred ChHHhcccccc---cccccccc------------------------------ccCCcccceeEEEeccCCCCCcEEEEec
Confidence 76532111100 00000000 11234456777888876 234588888
Q ss_pred CCCeEEEEcCCCcee--eeeccccccCeEEEEECCCC----CEEEEEEecCeEEEEECCCc-------------------
Q psy13076 240 EDNTIAVFEGPPFKF--KMTKQEHSRFVQAVRYSPSG----SHFASAGFDGKVFLYDGASA------------------- 294 (423)
Q Consensus 240 ~d~~i~~~~~~~~~~--~~~~~~~~~~i~~l~~s~~g----~~l~s~s~dg~i~vwd~~~~------------------- 294 (423)
.++.+.+|+...... ......|...|++++|+|++ ++|++|+.||.|++||.+++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 269 (351)
T 3f3f_A 190 LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNS 269 (351)
T ss_dssp TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------
T ss_pred CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCC
Confidence 999887776554443 55667889999999999998 89999999999999998764
Q ss_pred ---------------------------cceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeee
Q psy13076 295 ---------------------------DLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSE 343 (423)
Q Consensus 295 ---------------------------~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~ 343 (423)
+.+..+ .+|...|.+++|+|++++|++++.|+.|++||+.+++.+..
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 270 ADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH--DDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp ---------------------CCSEEEEEEEEE--CTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred cccccccccccccccceeeeecccccccEEEEE--ecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhh
Confidence 222223 35889999999999999999999999999999998765544
No 103
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-34 Score=277.68 Aligned_cols=271 Identities=14% Similarity=0.158 Sum_probs=198.2
Q ss_pred CCEEEEEeccceEEEEeccCCC----------CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecc
Q psy13076 16 GDYLLTVSLSGFISYLDVNNPS----------TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATL 85 (423)
Q Consensus 16 ~~~~~~~~~dg~i~~~d~~~~~----------~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~ 85 (423)
+.+||+++.||.|++||+..+. .+..++.+|.++|.+++|+++ ..|++|+.||+|++||++++..
T Consensus 225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~---- 299 (524)
T 2j04_B 225 VGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEV---- 299 (524)
T ss_dssp SCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSS----
T ss_pred CceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCC----
Confidence 5799999999999999997542 234578899999999999986 4899999999999999975311
Q ss_pred cCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEE--EECCCC-CEEEEEccCCcEEEEEcCC
Q psy13076 86 PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVA--KYSPSG-FYIASGDISGKVRIWDTVN 162 (423)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~--~~sp~~-~~l~s~~~d~~i~vwd~~~ 162 (423)
....+.+|...|+++ .|+|++ .+|||++.|++|+|||+++
T Consensus 300 -------------------------------------~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~ 342 (524)
T 2j04_B 300 -------------------------------------PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD 342 (524)
T ss_dssp -------------------------------------CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG
T ss_pred -------------------------------------ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC
Confidence 011346799999999 578888 8999999999999999987
Q ss_pred CceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCC
Q psy13076 163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN 242 (423)
Q Consensus 163 ~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~ 242 (423)
.+.......+.....|.+++|+|+++.+++++.+ ....+|+...+..+..+.+|...|.+++|+|++++ +++|+.|+
T Consensus 343 ~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d--~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~-l~Sgs~Dg 419 (524)
T 2j04_B 343 IATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGA--SSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPM-VLAGSADG 419 (524)
T ss_dssp HHHHCEEEEECSCCSCCCEEEETTTTEEEEECSS--SEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCB-CEEEETTT
T ss_pred CCcccccccccccCcccceEeCCCcCeEEEeCCC--CcEEEEECcccccceeeecCCCceEEEEeCCCCCe-EEEEECCC
Confidence 6543322222222357899999999987765543 34678888777777778899999999999999986 88999999
Q ss_pred eEEEEcCCCceeeeeccc-----cccCeEEEEECCCCCEEEEEEecCeEEEEECC-CccceecccccccCCCeEEEEECC
Q psy13076 243 TIAVFEGPPFKFKMTKQE-----HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGA-SADLVSELGNPAHKGGVYAVAWKP 316 (423)
Q Consensus 243 ~i~~~~~~~~~~~~~~~~-----~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~~~i~~l~~~~ 316 (423)
++++|+.....+ ..... +...+..++|+|+|+.+. . .| ...+|+.. ++.....+ .+|...|.+++|+|
T Consensus 420 tv~lwd~~~~~~-~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~-~~-~~~~~~~~~~g~~~~~l--~gh~~~V~~Vafsp 493 (524)
T 2j04_B 420 SLIITNAARRLL-HGIKNSSATQKSLRLWKWDYSIKDDKYR-I-DS-SYEVYPLTVNDVSKAKI--DAHGINITCTKWNE 493 (524)
T ss_dssp EEECCBSCSSTT-TCC------CCCCEEEECBCCSSSCEEE-E-CC-CCCCCC---------------CCCSCCCEEECC
T ss_pred EEEEEechHhhc-cccccCccceeeeEEEEeccCCCCCeEE-c-cC-CceecccccCCcceeee--cCCCceEEEEECCC
Confidence 999999643211 11110 112467899999998552 2 22 23333322 34444445 46889999999999
Q ss_pred CCC---eEEEEeCCCcEEEEecCC
Q psy13076 317 DGT---QLLTASGDKTCKLWDIET 337 (423)
Q Consensus 317 ~~~---~l~s~s~d~~i~iwd~~~ 337 (423)
+++ +|++|+.||+||||++..
T Consensus 494 ~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 494 TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp STTTTTEEEEECTTSEEEEEECSC
T ss_pred CCCccHHHHhhccCceEEEEEccc
Confidence 964 999999999999999864
No 104
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-32 Score=252.78 Aligned_cols=272 Identities=9% Similarity=0.045 Sum_probs=195.3
Q ss_pred EeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCc
Q psy13076 14 WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQP 93 (423)
Q Consensus 14 ~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~ 93 (423)
+|+.++++|+.||.|++||+.+ .+.+..+. .++|.++.|+|+ ++||+.|++|++|+....
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~-~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~-------------- 105 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKD-SKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQ-------------- 105 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESS-SSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTE--------------
T ss_pred CCCCEEEEECCCCcEEEEECCC-CcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCc--------------
Confidence 5899999999999999999976 44555665 578889999998 999999999999998642
Q ss_pred eEEeeCCCCCeEEEecCCeEEEEecCCCcccccc-cCCcceEEEEEECC--CCCEEEEEccCCcEEEEEcCCCceeEEee
Q psy13076 94 IVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIY-TEHSCAVNVAKYSP--SGFYIASGDISGKVRIWDTVNKEHILKNE 170 (423)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~h~~~i~~~~~sp--~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 170 (423)
+.+|+++++.....+ .+|...|.+++|+| +++++++++.|++|++||+++++......
T Consensus 106 -------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~ 166 (343)
T 3lrv_A 106 -------------------ITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS 166 (343)
T ss_dssp -------------------EEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEEC
T ss_pred -------------------eEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Confidence 334455555433333 37888999999999 99999999999999999998766532111
Q ss_pred ecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC
Q psy13076 171 FHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP 250 (423)
Q Consensus 171 ~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~ 250 (423)
..+..++.+++|+|++. .+++|+.|+.|++||.+
T Consensus 167 -~~~~~~i~~~~~~pdg~---------------------------------------------~lasg~~dg~i~iwd~~ 200 (343)
T 3lrv_A 167 -AKSDVEYSSGVLHKDSL---------------------------------------------LLALYSPDGILDVYNLS 200 (343)
T ss_dssp -CCSSCCCCEEEECTTSC---------------------------------------------EEEEECTTSCEEEEESS
T ss_pred -cCCCCceEEEEECCCCC---------------------------------------------EEEEEcCCCEEEEEECC
Confidence 11223455555555543 26778899999999987
Q ss_pred Cceee-eeccc-cccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccc-cccCCCe--EEEEECCCCCeEEEEe
Q psy13076 251 PFKFK-MTKQE-HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGN-PAHKGGV--YAVAWKPDGTQLLTAS 325 (423)
Q Consensus 251 ~~~~~-~~~~~-~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~~~i--~~l~~~~~~~~l~s~s 325 (423)
..+.. ..+.. |...|++++|+|+|.+|++++ |+.|++||+++++....+.. ..|...+ .+++|+|+|++|++++
T Consensus 201 ~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s 279 (343)
T 3lrv_A 201 SPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYS 279 (343)
T ss_dssp CTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEE
T ss_pred CCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEec
Confidence 66654 45566 899999999999999999999 55999999998876554431 1122223 4699999999999999
Q ss_pred C-CCcEEEEecCCcceeeeeeeCceeEeeEEEEEe---cCcEEEEEeCCCcEEEE
Q psy13076 326 G-DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW---QGDYLLTVSLSGFISYL 376 (423)
Q Consensus 326 ~-d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~---~g~~l~~~~~~~~i~~~ 376 (423)
. |+.+++|++......-.. .....+...+ ++..+++++.++.+.++
T Consensus 280 ~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 280 NESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp TTTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred CCCCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecCCceEEE
Confidence 8 999999999665422111 0111122222 45667777777766655
No 105
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-34 Score=269.01 Aligned_cols=265 Identities=12% Similarity=0.088 Sum_probs=196.1
Q ss_pred cccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCccc
Q psy13076 45 GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAIS 124 (423)
Q Consensus 45 gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 124 (423)
+-...|.+|+|+|||+++||++.|++|+ |.+..
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~--------------------------------------------- 45 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA--------------------------------------------- 45 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC---------------------------------------------
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccc---------------------------------------------
Confidence 3457899999999999999999999998 53321
Q ss_pred ccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEE
Q psy13076 125 DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVF 204 (423)
Q Consensus 125 ~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~ 204 (423)
..+.+|...|..++|+|+| .++++++|+.+.... ..+ .+...|.+++|||+|+.
T Consensus 46 ~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~---~~~-~~~~~V~~vawSPdG~~--------------- 99 (588)
T 2j04_A 46 KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNGL---LNS-QPVCYPRVCKPSPIDDW--------------- 99 (588)
T ss_dssp SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCS---STT-SCSCCEEEEEECSSSSC---------------
T ss_pred ceecCCCccEEEEEECCCC-------CcceEEEEeCCCceE---eec-CCCCcEEEEEECCCCCE---------------
Confidence 1225799999999999998 466666665432211 111 11345666666666553
Q ss_pred eecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecccccc-----CeEEEEECCCCCEEEE
Q psy13076 205 MSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSR-----FVQAVRYSPSGSHFAS 279 (423)
Q Consensus 205 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~-----~i~~l~~s~~g~~l~s 279 (423)
+|+++.||.+++|+... +...+. |.. .+.+++|||||++||+
T Consensus 100 ------------------------------LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAs 146 (588)
T 2j04_A 100 ------------------------------MAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVV 146 (588)
T ss_dssp ------------------------------EEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEE
T ss_pred ------------------------------EEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEE
Confidence 66788899999998543 333334 443 4999999999999999
Q ss_pred EEecCeEEEEECCCccc-------eeccc--ccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCccee---eeeeeC
Q psy13076 280 AGFDGKVFLYDGASADL-------VSELG--NPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAV---SEFLMG 347 (423)
Q Consensus 280 ~s~dg~i~vwd~~~~~~-------~~~~~--~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i---~~~~~~ 347 (423)
|+.||+|++||..++.. +.++. ..+|...|.+++|+|+| |++++.|++|++||+..++.. .++...
T Consensus 147 gs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~ 224 (588)
T 2j04_A 147 GNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNA 224 (588)
T ss_dssp EETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECC
T ss_pred EcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeeccc
Confidence 99999999999988753 33331 24578899999999999 888999999999999887742 233223
Q ss_pred ceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEe--cCCCCeEEEecCCCcEEEeeCC
Q psy13076 348 NQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALAL--SPDRGTVFTGSHDGFITRWNAK 422 (423)
Q Consensus 348 ~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~--sp~~~~l~s~s~D~~i~~W~~~ 422 (423)
+......+.++ |..+++++ ++.|++|+..+...... ..+|...|++++| +||+..|++++.||+ ++|...
T Consensus 225 h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~-~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 225 SRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL-KTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE-ECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred ccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE-EcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 33333344444 78888887 69999999987543222 2389999999999 999999999999999 999863
No 106
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=6.3e-33 Score=257.00 Aligned_cols=276 Identities=18% Similarity=0.219 Sum_probs=209.7
Q ss_pred eeEEEEe---CCEEEEEeccceEEEEeccCCCCce-eecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeec
Q psy13076 9 QVSCLWQ---GDYLLTVSLSGFISYLDVNNPSTPI-RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFAT 84 (423)
Q Consensus 9 ~~~~~~~---~~~~~~~~~dg~i~~~d~~~~~~~~-~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~ 84 (423)
+++++++ |++|++++.||.|++||+.+....+ ..+.+|.++|.+++|+|++++|++|+.||+|++||++++....
T Consensus 44 ~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~- 122 (368)
T 3mmy_A 44 CLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ- 122 (368)
T ss_dssp EEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-
T ss_pred EEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-
Confidence 4455566 6999999999999999998744444 7889999999999999999999999999999999998754321
Q ss_pred ccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEE--CCCCCEEEEEccCCcEEEEEcCC
Q psy13076 85 LPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKY--SPSGFYIASGDISGKVRIWDTVN 162 (423)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~--sp~~~~l~s~~~d~~i~vwd~~~ 162 (423)
+.+|...|++++| +|++.++++++.|+.|++||+.+
T Consensus 123 ------------------------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 160 (368)
T 3mmy_A 123 ------------------------------------------IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 160 (368)
T ss_dssp ------------------------------------------EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC
T ss_pred ------------------------------------------eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC
Confidence 1247889999999 99999999999999999999988
Q ss_pred CceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceec-c-cCCCcceeEEEEecCCC---eeEEE
Q psy13076 163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE-I-SGQSKPINSCDFKPSRP---FRIIT 237 (423)
Q Consensus 163 ~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~~~~~---~~~~s 237 (423)
.+.......+ ..+.++.+.++ .+++++.+. ...+|.......... . ........++.+.+... ..+++
T Consensus 161 ~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (368)
T 3mmy_A 161 SNPMMVLQLP---ERCYCADVIYP--MAVVATAER--GLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL 233 (368)
T ss_dssp SSCSEEEECS---SCEEEEEEETT--EEEEEEGGG--CEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEE
T ss_pred CcEEEEEecC---CCceEEEecCC--eeEEEeCCC--cEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEE
Confidence 7765444332 35666666643 555554433 245565554332211 1 12334455555555432 23899
Q ss_pred EeCCCeEEEEcCCCc---eeeeecccccc------------CeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccc
Q psy13076 238 GSEDNTIAVFEGPPF---KFKMTKQEHSR------------FVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGN 302 (423)
Q Consensus 238 ~s~d~~i~~~~~~~~---~~~~~~~~~~~------------~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 302 (423)
++.|+.+++|+.... .....+..|.. .|++++|+|++++|++|+.||.|++||..+++.+..+.
T Consensus 234 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~- 312 (368)
T 3mmy_A 234 GSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE- 312 (368)
T ss_dssp EETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-
T ss_pred ecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec-
Confidence 999999999997654 23334444444 69999999999999999999999999999998887774
Q ss_pred cccCCCeEEEEECCCCCeEEEEeCCCcEEEEecC
Q psy13076 303 PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIE 336 (423)
Q Consensus 303 ~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~ 336 (423)
.|...|.+++|+|++++|++++.|+..+.|++.
T Consensus 313 -~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 313 -QLDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp -CCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred -CCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 688999999999999999999999866655543
No 107
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.9e-33 Score=263.76 Aligned_cols=273 Identities=15% Similarity=0.198 Sum_probs=199.3
Q ss_pred eeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecC
Q psy13076 40 IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIE 119 (423)
Q Consensus 40 ~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 119 (423)
...+++|.++|++++|+| ++|++|+.||+|++||++++.....
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~----------------------------------- 51 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP----------------------------------- 51 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG-----------------------------------
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccC-----------------------------------
Confidence 457889999999999999 7999999999999999986531110
Q ss_pred CCcccccccCCcceEEEEEECCC----C---CEEEEEccCCcEEEEEcCCCcee---EEeeecCCCCCeeEEEECCCCCe
Q psy13076 120 NPAISDIYTEHSCAVNVAKYSPS----G---FYIASGDISGKVRIWDTVNKEHI---LKNEFHPIGGPIKDIAWSPDNQR 189 (423)
Q Consensus 120 ~~~~~~~~~~h~~~i~~~~~sp~----~---~~l~s~~~d~~i~vwd~~~~~~~---~~~~~~~~~~~v~~v~~s~~~~~ 189 (423)
......+.+|...|++++|+|+ + ++|++++.|+.|++||+.+.+.. ....+..+.
T Consensus 52 -~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-------------- 116 (397)
T 1sq9_A 52 -KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLD-------------- 116 (397)
T ss_dssp -GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSC--------------
T ss_pred -CCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccc--------------
Confidence 1122345579999999999999 9 99999999999999998755420 001111110
Q ss_pred EEEEEcCCceeeEEEeecCCcceecccCC--CcceeEEEEe----cCCCeeEEEEeCCCeEEEEcCCC------ceeee-
Q psy13076 190 MVVVGEGRERFGHVFMSETGTSVGEISGQ--SKPINSCDFK----PSRPFRIITGSEDNTIAVFEGPP------FKFKM- 256 (423)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~----~~~~~~~~s~s~d~~i~~~~~~~------~~~~~- 256 (423)
.+ ...|.+++|+ |++...+++++.|+.|++|+... .....
T Consensus 117 ---------------------------~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 169 (397)
T 1sq9_A 117 ---------------------------SDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW 169 (397)
T ss_dssp ---------------------------TTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred ---------------------------cccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeec
Confidence 00 2345555566 55554366777788888887654 22221
Q ss_pred ----ec-------cccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccc-ccc---CCCeEEEEECCCCCeE
Q psy13076 257 ----TK-------QEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGN-PAH---KGGVYAVAWKPDGTQL 321 (423)
Q Consensus 257 ----~~-------~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~---~~~i~~l~~~~~~~~l 321 (423)
.+ ..|...+.+++|+|++ ++++++.||.|++||.++++.+..+.. ..| ...|.+++|+|++++|
T Consensus 170 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l 248 (397)
T 1sq9_A 170 SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 248 (397)
T ss_dssp CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEE
T ss_pred cCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEE
Confidence 22 4477889999999999 999999999999999998887766641 117 8899999999999999
Q ss_pred EEEeCC---CcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEE
Q psy13076 322 LTASGD---KTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITAL 398 (423)
Q Consensus 322 ~s~s~d---~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i 398 (423)
++++.| +.|++||+++++.+..+..... +.........|..+|+++
T Consensus 249 ~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~v~~~ 297 (397)
T 1sq9_A 249 AIAHDSNSFGCITLYETEFGERIGSLSVPTH-------------------------------SSQASLGEFAHSSWVMSL 297 (397)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEECBC---------------------------------------CCBSBSSCEEEE
T ss_pred EEEecCCCCceEEEEECCCCcccceeccCcc-------------------------------cccccccccccCCcEEEE
Confidence 999999 9999999998876554421100 000011123489999999
Q ss_pred EecCCCCeEEEecCCCcEEEeeCCC
Q psy13076 399 ALSPDRGTVFTGSHDGFITRWNAKT 423 (423)
Q Consensus 399 ~~sp~~~~l~s~s~D~~i~~W~~~~ 423 (423)
+|+|++++|++++.|+.|++||+.+
T Consensus 298 ~~~~~~~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 298 SFNDSGETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTT
T ss_pred EECCCCCEEEEEeCCCeEEEEEcCC
Confidence 9999999999999999999999864
No 108
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-33 Score=285.21 Aligned_cols=258 Identities=21% Similarity=0.303 Sum_probs=205.2
Q ss_pred eeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecC
Q psy13076 40 IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIE 119 (423)
Q Consensus 40 ~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 119 (423)
+.+++||.++|++++|+|++++|++|+.||+|++||+.++..
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-------------------------------------- 43 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-------------------------------------- 43 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE--------------------------------------
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC--------------------------------------
Confidence 347899999999999999999999999999999999863211
Q ss_pred CCcccccccCCcceEEEEEECCC--CCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCC--CCeEEEEEc
Q psy13076 120 NPAISDIYTEHSCAVNVAKYSPS--GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD--NQRMVVVGE 195 (423)
Q Consensus 120 ~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--~~~~~~~~~ 195 (423)
.....+.+|...|++++|+|+ ++++++|+.||+|++||+.+++......+..+..+|.+++|+|+ +..+++++.
T Consensus 44 --~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~ 121 (753)
T 3jro_A 44 --KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS 121 (753)
T ss_dssp --EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred --ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeC
Confidence 112245679999999999998 99999999999999999988764444455667789999999999 888888765
Q ss_pred CCceeeEEEeecCCc--ceecccCCCcceeEEEEecC------------CCeeEEEEeCCCeEEEEcCCCc----eeeee
Q psy13076 196 GRERFGHVFMSETGT--SVGEISGQSKPINSCDFKPS------------RPFRIITGSEDNTIAVFEGPPF----KFKMT 257 (423)
Q Consensus 196 ~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~------------~~~~~~s~s~d~~i~~~~~~~~----~~~~~ 257 (423)
+. ...+|+...+. ....+..|...+.++.|+|. +...+++++.|+.|++|+.... .....
T Consensus 122 dg--~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 199 (753)
T 3jro_A 122 DG--KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199 (753)
T ss_dssp TS--EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred CC--cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeee
Confidence 43 45677766553 33455678889999999995 2345899999999999986543 45556
Q ss_pred ccccccCeEEEEECCC---CCEEEEEEecCeEEEEECCCccce---ecccccccCCCeEEEEECCCCCeEEEEeCCCcEE
Q psy13076 258 KQEHSRFVQAVRYSPS---GSHFASAGFDGKVFLYDGASADLV---SELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCK 331 (423)
Q Consensus 258 ~~~~~~~i~~l~~s~~---g~~l~s~s~dg~i~vwd~~~~~~~---~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~ 331 (423)
...|...|.+++|+|+ ++++++|+.||.|++||..+++.. .......|...|.+++|+|+|++|++++.||.|+
T Consensus 200 ~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~ 279 (753)
T 3jro_A 200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT 279 (753)
T ss_dssp ECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEE
T ss_pred ecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEE
Confidence 7789999999999999 899999999999999999876421 1122235788899999999999999999999999
Q ss_pred EEecCCcc
Q psy13076 332 LWDIETKS 339 (423)
Q Consensus 332 iwd~~~~~ 339 (423)
+||+....
T Consensus 280 vwd~~~~~ 287 (753)
T 3jro_A 280 LWKENLEG 287 (753)
T ss_dssp CCBCCSSS
T ss_pred EEecCCCC
Confidence 99998643
No 109
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.4e-32 Score=257.01 Aligned_cols=244 Identities=24% Similarity=0.352 Sum_probs=190.9
Q ss_pred eEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCC
Q psy13076 10 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQ 89 (423)
Q Consensus 10 ~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~ 89 (423)
+++++||++|++++.||.|++||+.+ .+.+..+.+|.++|.+++|+ +.+|++|+.|+.|++||+.....
T Consensus 140 v~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~-------- 208 (401)
T 4aez_A 140 VKWSHDGSFLSVGLGNGLVDIYDVES-QTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANH-------- 208 (401)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC--------
T ss_pred EEECCCCCEEEEECCCCeEEEEECcC-CeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcc--------
Confidence 44445899999999999999999976 46677899999999999995 56999999999999999874210
Q ss_pred CCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEe
Q psy13076 90 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN 169 (423)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 169 (423)
....+.+|...|.+++|+|++.++++++.|+.|++||+.+.+....
T Consensus 209 ---------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~- 254 (401)
T 4aez_A 209 ---------------------------------QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT- 254 (401)
T ss_dssp ---------------------------------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE-
T ss_pred ---------------------------------eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE-
Confidence 1123457889999999999999999999999999999987654432
Q ss_pred eecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEe--CCCeEEEE
Q psy13076 170 EFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS--EDNTIAVF 247 (423)
Q Consensus 170 ~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s--~d~~i~~~ 247 (423)
+..+...|.+++|+|++.. .+++++ .|+.|++|
T Consensus 255 -~~~~~~~v~~~~~~p~~~~--------------------------------------------ll~~~~gs~d~~i~i~ 289 (401)
T 4aez_A 255 -KTNHNAAVKAVAWCPWQSN--------------------------------------------LLATGGGTMDKQIHFW 289 (401)
T ss_dssp -ECCCSSCCCEEEECTTSTT--------------------------------------------EEEEECCTTTCEEEEE
T ss_pred -ecCCcceEEEEEECCCCCC--------------------------------------------EEEEecCCCCCEEEEE
Confidence 2334455666666665543 344443 78999999
Q ss_pred cCCCceeeeeccccccCeEEEEECCCCCEEEEEE--ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEe
Q psy13076 248 EGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG--FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS 325 (423)
Q Consensus 248 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s 325 (423)
+....+...... +...+.+++|+|+++++++++ .||.|++||..+++........+|...|.+++|+|++++|++++
T Consensus 290 d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~ 368 (401)
T 4aez_A 290 NAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAA 368 (401)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEEC
T ss_pred ECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEe
Confidence 987666554443 556799999999999999954 89999999998876555444457899999999999999999999
Q ss_pred CCCcEEEEecCCcceeeee
Q psy13076 326 GDKTCKLWDIETKSAVSEF 344 (423)
Q Consensus 326 ~d~~i~iwd~~~~~~i~~~ 344 (423)
.|++|++||+.+++.+...
T Consensus 369 ~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 369 SDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp TTSEEEEEECCC-------
T ss_pred CCCcEEEEECCCCcccccc
Confidence 9999999999988766543
No 110
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=3.9e-32 Score=257.87 Aligned_cols=279 Identities=14% Similarity=0.248 Sum_probs=207.8
Q ss_pred eecccccCceeEEEEeCC-CCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecC
Q psy13076 41 RVIKGHNKPITALALSPD-RGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIE 119 (423)
Q Consensus 41 ~~~~gh~~~V~~l~~~~~-~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 119 (423)
....+|.++|++++|+|+ +.+|++|+.||.|++||+.+...... +. .
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------------~~-----------------~ 169 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------------PS-----------------G 169 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------------TT-----------------C
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------------cc-----------------c
Confidence 345689999999999997 67999999999999999975311000 00 0
Q ss_pred CCcccccccCCcceEEEEEECCCCC-EEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCc
Q psy13076 120 NPAISDIYTEHSCAVNVAKYSPSGF-YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE 198 (423)
Q Consensus 120 ~~~~~~~~~~h~~~i~~~~~sp~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~ 198 (423)
.......+.+|...|.+++|+|++. +|++++.||+|++||+........ . +
T Consensus 170 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~---------~--~----------------- 221 (430)
T 2xyi_A 170 ECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR---------V--I----------------- 221 (430)
T ss_dssp CCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGG---------E--E-----------------
T ss_pred cCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCc---------e--e-----------------
Confidence 1223345678999999999999988 999999999999999876321000 0 0
Q ss_pred eeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc---eeeeeccccccCeEEEEECCCCC
Q psy13076 199 RFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF---KFKMTKQEHSRFVQAVRYSPSGS 275 (423)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~---~~~~~~~~~~~~i~~l~~s~~g~ 275 (423)
.....+..|...|.+++|+|.+...+++++.|+.|++|+.+.. +.......|...|++++|+|+++
T Consensus 222 -----------~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~ 290 (430)
T 2xyi_A 222 -----------DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 290 (430)
T ss_dssp -----------ECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCT
T ss_pred -----------ccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCC
Confidence 0001122455567777777755556889999999999998754 34445568889999999999998
Q ss_pred -EEEEEEecCeEEEEECCCc-cceecccccccCCCeEEEEECCCCC-eEEEEeCCCcEEEEecCCcceeeeeeeCceeEe
Q psy13076 276 -HFASAGFDGKVFLYDGASA-DLVSELGNPAHKGGVYAVAWKPDGT-QLLTASGDKTCKLWDIETKSAVSEFLMGNQVED 352 (423)
Q Consensus 276 -~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~i~~l~~~~~~~-~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~ 352 (423)
++++|+.||.|++||+++. ..+..+ ..|...|.+++|+|+++ +|++++.|+.|++||+............
T Consensus 291 ~~l~tg~~dg~v~vwd~~~~~~~~~~~--~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----- 363 (430)
T 2xyi_A 291 FILATGSADKTVALWDLRNLKLKLHSF--ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA----- 363 (430)
T ss_dssp TEEEEEETTSEEEEEETTCTTSCSEEE--ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHH-----
T ss_pred CEEEEEeCCCeEEEEeCCCCCCCeEEe--ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcccc-----
Confidence 6899999999999999874 444555 35889999999999995 6899999999999999764321110000
Q ss_pred eEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCC-eEEEecCCCcEEEeeCC
Q psy13076 353 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNAK 422 (423)
Q Consensus 353 ~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~-~l~s~s~D~~i~~W~~~ 422 (423)
...+...+....+|...|++++|+|+++ +|++++.|+.|++|++.
T Consensus 364 -------------------------~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 364 -------------------------EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp -------------------------HHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred -------------------------ccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 0001233456788999999999999999 89999999999999975
No 111
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.1e-32 Score=258.36 Aligned_cols=331 Identities=15% Similarity=0.110 Sum_probs=189.8
Q ss_pred ccceeeEEEE-----eCCEEEEEeccceEEEEeccCCCCce------ee--cccccCceeEEEEe---------------
Q psy13076 5 VEDQQVSCLW-----QGDYLLTVSLSGFISYLDVNNPSTPI------RV--IKGHNKPITALALS--------------- 56 (423)
Q Consensus 5 ~~~~~~~~~~-----~~~~~~~~~~dg~i~~~d~~~~~~~~------~~--~~gh~~~V~~l~~~--------------- 56 (423)
++..-.++.| ++..+++++.|+.|.+|+...+..+. .. ...|..++..+.|+
T Consensus 14 l~~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (393)
T 4gq1_A 14 LNVRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGN 93 (393)
T ss_dssp TTCCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-------
T ss_pred CCCCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcc
Confidence 3444555556 34445556678899999864322111 00 11234444444443
Q ss_pred -----CCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCc
Q psy13076 57 -----PDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHS 131 (423)
Q Consensus 57 -----~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~ 131 (423)
+++.+|++|+.|++||+||.+++..... .....+.+|.
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~-------------------------------------~~~~~~~gH~ 136 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQ-------------------------------------HVLGGKSGHH 136 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEE-------------------------------------EEECTTTSCS
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCcccee-------------------------------------eeecccCCCC
Confidence 4556799999999999999877543211 1123578999
Q ss_pred ceEEEEEECC--------CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEE
Q psy13076 132 CAVNVAKYSP--------SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHV 203 (423)
Q Consensus 132 ~~i~~~~~sp--------~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~ 203 (423)
+.|++++|+| |+++|||++.|++|||||+.+....... ..+..++.+++|+|++..+++.+.. +...++
T Consensus 137 ~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~--~~~~~~v~~v~~~p~~~~~l~~~~~-d~~v~~ 213 (393)
T 4gq1_A 137 NFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAG--YPLSSPGISVQFRPSNPNQLIVGER-NGNIRI 213 (393)
T ss_dssp SCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEE--EECSSCEEEEEEETTEEEEEEEEET-TSEEEE
T ss_pred CceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeee--cCCCCCcEEEEECCCCCceEEecCC-CCEEEE
Confidence 9999999998 8999999999999999999776544322 2344677888888876543333322 223445
Q ss_pred EeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEEC-CCCCEEEEEEe
Q psy13076 204 FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYS-PSGSHFASAGF 282 (423)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~s~s~ 282 (423)
|+..++........+........+.+ +............|...+.+++|+ |+|+.+++++.
T Consensus 214 wd~~t~~~~~~~~~~~~~~~~~~~s~------------------~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~ 275 (393)
T 4gq1_A 214 FDWTLNLSAEENSQTELVKNPWLLTL------------------NTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCK 275 (393)
T ss_dssp EETTCCC----------CSCCCSEEE------------------ESGGGC------CCSSSCSEEEEETTTTCEEEEECT
T ss_pred EECCCCcccccccccCCcccceEEec------------------ccccceeeeecccccccceeeeeecCCCCEEEEEeC
Confidence 55544433222211111100000000 000001111234566778888876 89999999999
Q ss_pred cCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCc
Q psy13076 283 DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGD 362 (423)
Q Consensus 283 dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~ 362 (423)
|+.+++||+..++....+. .|...+..+.+.|+.+.+.......... .....++.
T Consensus 276 d~~i~vwd~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~ 330 (393)
T 4gq1_A 276 SGAWLRWNLFANNDYNEIS--DSTMKLGPKNLLPNVQGISLFPSLLGAC-----------------------PHPRYMDY 330 (393)
T ss_dssp TSEEEEEEC---------------------CCSCSEEEECSSCCSSCCE-----------------------ECSSCTTE
T ss_pred CCCEEEEECccCCCCceEe--eecCccccEEEccccccccccCcceeEE-----------------------EccCCCCE
Confidence 9999999998887666553 4667777777777754432221111000 01112455
Q ss_pred EEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076 363 YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420 (423)
Q Consensus 363 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~ 420 (423)
++++|+.||.|++||..++.. ...+.+|..+|++++|||||++||++++||. .+|.
T Consensus 331 ~~~sgs~Dg~V~lwd~~~~~~-~~~~~~~~~~V~svafspdG~~LA~as~~Gv-~lvr 386 (393)
T 4gq1_A 331 FATAHSQHGLIQLINTYEKDS-NSIPIQLGMPIVDFCWHQDGSHLAIATEGSV-LLTR 386 (393)
T ss_dssp EEEEETTTTEEEEEETTCTTC-CEEEEECSSCEEEEEECTTSSEEEEEESSEE-EEEE
T ss_pred EEEEECCCCEEEEEECCCCcE-EEEecCCCCcEEEEEEcCCCCEEEEEeCCCe-EEEE
Confidence 667788899999999887644 4566788999999999999999999998874 4443
No 112
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-32 Score=252.26 Aligned_cols=275 Identities=14% Similarity=0.077 Sum_probs=201.0
Q ss_pred EEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcce
Q psy13076 54 ALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 133 (423)
Q Consensus 54 ~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~ 133 (423)
.+.+++.+|++|+.||+|++||+++++.+..+. ...
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--------------------------------------------~~~ 78 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--------------------------------------------TPN 78 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--------------------------------------------EEC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--------------------------------------------cCC
Confidence 344678899999999999999998865443221 123
Q ss_pred EEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCccee
Q psy13076 134 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVG 213 (423)
Q Consensus 134 i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (423)
|.++.|+|+ +++++.|++|++|+........ ...++..+.
T Consensus 79 v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~-------------------------------------~~~~~~~~~ 118 (343)
T 3lrv_A 79 PRTGGEHPA---IISRGPCNRLLLLYPGNQITIL-------------------------------------DSKTNKVLR 118 (343)
T ss_dssp CCTTCCCCS---EEEECSTTEEEEEETTTEEEEE-------------------------------------ETTTCCEEE
T ss_pred ceeeeeCCc---eEEecCCCeEEEEEccCceEEe-------------------------------------ecCCcceeE
Confidence 445567777 9999999999999976421111 111111111
Q ss_pred c-ccCCCcceeEEEEec--CCCeeEEEEeCCCeEEEEcCCCceeeeec-cccccCeEEEEECCCCCEEEEEEecCeEEEE
Q psy13076 214 E-ISGQSKPINSCDFKP--SRPFRIITGSEDNTIAVFEGPPFKFKMTK-QEHSRFVQAVRYSPSGSHFASAGFDGKVFLY 289 (423)
Q Consensus 214 ~-~~~~~~~i~~~~~~~--~~~~~~~s~s~d~~i~~~~~~~~~~~~~~-~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vw 289 (423)
. ...|..+|.+++++| ++.+ +++++.|++|++||....+..... ..+...+.+++|+|+|.+|++|+.||.|++|
T Consensus 119 ~~~~~~~~~v~~~~~~~~~~~~~-l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 119 EIEVDSANEIIYMYGHNEVNTEY-FIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY 197 (343)
T ss_dssp EEECCCSSCEEEEECCC---CCE-EEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred EeecCCCCCEEEEEcCCCCCCCE-EEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 1 113455788888888 7765 889999999999998776654433 3455679999999999999999999999999
Q ss_pred ECCCccce-ecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeC----ceeEeeEEEEEecCcEE
Q psy13076 290 DGASADLV-SELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMG----NQVEDQQVSCLWQGDYL 364 (423)
Q Consensus 290 d~~~~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~----~~~~~~~~~~~~~g~~l 364 (423)
|.++++.. ..+.. .|.+.|.+++|+|++++|++++. ++|++||+++.+.+..+... .+.....+.+.++|.+|
T Consensus 198 d~~~~~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 275 (343)
T 3lrv_A 198 NLSSPDQASSRFPV-DEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNM 275 (343)
T ss_dssp ESSCTTSCCEECCC-CTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEE
T ss_pred ECCCCCCCccEEec-cCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEE
Confidence 99998876 55542 48999999999999999999994 59999999988765443210 11111246677899999
Q ss_pred EEEeC-CCcEEEEecCCCCCceEEeccCCCceeEEEecC---CCCeEEEecCCCcEEEee
Q psy13076 365 LTVSL-SGFISYLDVNNPSTPIRVIKGHNKPITALALSP---DRGTVFTGSHDGFITRWN 420 (423)
Q Consensus 365 ~~~~~-~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp---~~~~l~s~s~D~~i~~W~ 420 (423)
++++. ++.+++|+.......... .++..++|+| +.+.|++++.|+.+.++-
T Consensus 276 ~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 276 IAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp EEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred EEecCCCCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecCCceEEEE
Confidence 99998 999999999765443222 5788899998 888899999999888763
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=4.3e-30 Score=240.56 Aligned_cols=338 Identities=16% Similarity=0.163 Sum_probs=247.9
Q ss_pred CCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeE-EEecCCCceEEeecCCcceeecccCCCCCCce
Q psy13076 16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTV-FTGSHDGFITRWNAKTEYIFATLPRTQRGQPI 94 (423)
Q Consensus 16 ~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l-~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~ 94 (423)
+.++++++.|+.|++||+.+ .+.+..+.+|. .+.+++|+|++++| ++++.|++|++||.+++++...+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~-~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~--------- 70 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTS-NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV--------- 70 (391)
T ss_dssp EEEEEEETTTTEEEEEETTT-TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE---------
T ss_pred CEEEEEcCCCCEEEEEECCC-CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE---------
Confidence 35678889999999999976 46666777775 58999999999876 78889999999999877554322
Q ss_pred EEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEE-EEccCCcEEEEEcCCCceeEEeeecC
Q psy13076 95 VLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTVNKEHILKNEFHP 173 (423)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~ 173 (423)
..| ..+.+++|+|++++++ +++.++.|++||+.+++......
T Consensus 71 ---------------------------------~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~--- 113 (391)
T 1l0q_A 71 ---------------------------------PAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--- 113 (391)
T ss_dssp ---------------------------------ECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---
T ss_pred ---------------------------------ECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe---
Confidence 112 2688999999999885 55567999999998876554333
Q ss_pred CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce
Q psy13076 174 IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK 253 (423)
Q Consensus 174 ~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~ 253 (423)
....+.+++|+|+++.+++.+... ....+|+..+++.+..+..+ ..+..+.|+|++..++++++.++.|++||....+
T Consensus 114 ~~~~~~~~~~s~dg~~l~~~~~~~-~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~ 191 (391)
T 1l0q_A 114 TGKSPLGLALSPDGKKLYVTNNGD-KTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS 191 (391)
T ss_dssp CSSSEEEEEECTTSSEEEEEETTT-TEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred CCCCcceEEECCCCCEEEEEeCCC-CEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe
Confidence 235689999999999886665433 34567777777766666554 3568999999998877888899999999987766
Q ss_pred eeeeccccccCeEEEEECCCCCEEEEEE---ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeE-EEEeCCCc
Q psy13076 254 FKMTKQEHSRFVQAVRYSPSGSHFASAG---FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQL-LTASGDKT 329 (423)
Q Consensus 254 ~~~~~~~~~~~i~~l~~s~~g~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~s~s~d~~ 329 (423)
...... +...+.+++|+|+|+++++++ .++.|++||..+++.+..+.. | ..+.+++|+|++++| ++++.|+.
T Consensus 192 ~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~-~~~~~~~~s~dg~~l~~s~~~d~~ 267 (391)
T 1l0q_A 192 VIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV--G-PDPAGIAVTPDGKKVYVALSFXNT 267 (391)
T ss_dssp EEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC--C-SSEEEEEECTTSSEEEEEETTTTE
T ss_pred EEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec--C-CCccEEEEccCCCEEEEEcCCCCE
Confidence 554443 445688999999999998888 689999999998887766642 3 357899999999987 67788999
Q ss_pred EEEEecCCcceeeeeeeCceeEe--eEEE------------EEec--------C--cEEEEEeCCCcEEEEecCCCCCce
Q psy13076 330 CKLWDIETKSAVSEFLMGNQVED--QQVS------------CLWQ--------G--DYLLTVSLSGFISYLDVNNPSTPI 385 (423)
Q Consensus 330 i~iwd~~~~~~i~~~~~~~~~~~--~~~~------------~~~~--------g--~~l~~~~~~~~i~~~~~~~~~~~~ 385 (423)
|++||+.+++.+..+..+..... ..+. +..+ . -.+...+.+...++|+..++..
T Consensus 268 v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~-- 345 (391)
T 1l0q_A 268 VSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS-- 345 (391)
T ss_dssp EEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE--
T ss_pred EEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc--
Confidence 99999999988776644321110 0000 1111 1 2344556677899999876532
Q ss_pred EEeccCCCceeEEEecCCCCeEEEe---cCCC
Q psy13076 386 RVIKGHNKPITALALSPDRGTVFTG---SHDG 414 (423)
Q Consensus 386 ~~~~~h~~~v~~i~~sp~~~~l~s~---s~D~ 414 (423)
..+..+ ...|+|+|.+.++. ..||
T Consensus 346 ---~~~~~~--~~~~~~~g~y~~~~~~~~~~g 372 (391)
T 1l0q_A 346 ---SKKQNP--THTYSETGIYTVRLTVSNSNG 372 (391)
T ss_dssp ---ECSSSC--EECCSSCEEEEEEEEEEETTE
T ss_pred ---cCcCCC--eEEeCCCceEEEEEEEECCCC
Confidence 123333 46799999987643 3555
No 114
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=8.9e-32 Score=239.15 Aligned_cols=276 Identities=9% Similarity=0.049 Sum_probs=191.7
Q ss_pred CEEEEEeccceEEEEeccCCC--CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCce
Q psy13076 17 DYLLTVSLSGFISYLDVNNPS--TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPI 94 (423)
Q Consensus 17 ~~~~~~~~dg~i~~~d~~~~~--~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~ 94 (423)
+.++..+.-..|++|+..... +.++++++|..||..+++.||...|+--.-
T Consensus 54 ~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--------------------------- 106 (356)
T 2w18_A 54 EPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVAL--------------------------- 106 (356)
T ss_dssp EEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEE---------------------------
T ss_pred ccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeee---------------------------
Confidence 345666667799999998743 678899999999999999997543321110
Q ss_pred EEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCC----CCEEEEEccCCcEEEEEcCCCceeEEee
Q psy13076 95 VLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS----GFYIASGDISGKVRIWDTVNKEHILKNE 170 (423)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~----~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 170 (423)
| .-|...|++++|+|+ ++++++++.+ +++|++.+++.+.. .
T Consensus 107 ---------------~-----------------~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~s-s 151 (356)
T 2w18_A 107 ---------------G-----------------NLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSS-S 151 (356)
T ss_dssp ---------------C-----------------SSSEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEE-E
T ss_pred ---------------c-----------------cccccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEe-c
Confidence 0 014457899999999 9999998844 77887654332211 1
Q ss_pred ecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC
Q psy13076 171 FHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP 250 (423)
Q Consensus 171 ~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~ 250 (423)
...+...|+.++|+|+|+.
T Consensus 152 ~~g~d~~V~~~~~s~dG~~------------------------------------------------------------- 170 (356)
T 2w18_A 152 GTLSDQQVEVMTFAEDGGG------------------------------------------------------------- 170 (356)
T ss_dssp SSSTTCEEEEEEECTTSCE-------------------------------------------------------------
T ss_pred ccCCCCcEEEEEECCCCce-------------------------------------------------------------
Confidence 1112333444444444332
Q ss_pred CceeeeeccccccCeEEEEECC---CCCEEEEEEecCeEEEEECCCccceeccccc-ccCCCeEEEEECCCCCeE-----
Q psy13076 251 PFKFKMTKQEHSRFVQAVRYSP---SGSHFASAGFDGKVFLYDGASADLVSELGNP-AHKGGVYAVAWKPDGTQL----- 321 (423)
Q Consensus 251 ~~~~~~~~~~~~~~i~~l~~s~---~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l----- 321 (423)
......|...++.++|+| ++.+|++|+.|++|++||+++++.+.++... .+...+.+++|+|+|+++
T Consensus 171 ----~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~ 246 (356)
T 2w18_A 171 ----KENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSH 246 (356)
T ss_dssp ----EEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-
T ss_pred ----eeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEecc
Confidence 222334556677888998 7799999999999999999999998888521 123467888999999876
Q ss_pred -------EEEeCCCcEEEEecCCcceeeeeee----CceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEecc
Q psy13076 322 -------LTASGDKTCKLWDIETKSAVSEFLM----GNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKG 390 (423)
Q Consensus 322 -------~s~s~d~~i~iwd~~~~~~i~~~~~----~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 390 (423)
++|+.|++|++||..+++++..+.. ++... .+....++..+++++.|+.|++||+.++ +.++.+.+
T Consensus 247 ~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~--~lsg~~sg~~lASgS~DgTIkIWDl~tG-k~l~tL~g 323 (356)
T 2w18_A 247 PCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGR--FLEGDVKDHCAAAILTSGTIAIWDLLLG-QCTALLPP 323 (356)
T ss_dssp -----------CCEEEEEEETTTTEEEEEEEECCCTTCCCC--EEEEEEETTEEEEEETTSCEEEEETTTC-SEEEEECC
T ss_pred CCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcce--eEccccCCCEEEEEcCCCcEEEEECCCC-cEEEEecC
Confidence 6688999999999999988765421 11111 2233445778999999999999999886 45678899
Q ss_pred CCCcee-EEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076 391 HNKPIT-ALALSPDRGTVFTGSHDGFITRWNAK 422 (423)
Q Consensus 391 h~~~v~-~i~~sp~~~~l~s~s~D~~i~~W~~~ 422 (423)
|...+. .++||||+++|+||+.|++|++||+.
T Consensus 324 H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 324 VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp C--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence 988766 58999999999999999999999963
No 115
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=5.2e-31 Score=250.23 Aligned_cols=309 Identities=12% Similarity=0.099 Sum_probs=225.7
Q ss_pred EeccceEEEEeccCCC---CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEee
Q psy13076 22 VSLSGFISYLDVNNPS---TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGG 98 (423)
Q Consensus 22 ~~~dg~i~~~d~~~~~---~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~ 98 (423)
++.++.+.+|.++... +.+..+..+. .+.+++|+|++.++++++.|++|++||.++++......
T Consensus 95 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~------------ 161 (433)
T 3bws_A 95 KPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSP------------ 161 (433)
T ss_dssp SGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECC------------
T ss_pred ccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecC------------
Confidence 3445534455443211 3444555554 45699999988889999999999999998865543211
Q ss_pred CCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCe
Q psy13076 99 DPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPI 178 (423)
Q Consensus 99 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v 178 (423)
...+.+|...|.+++|+|+++++++++.|+.|++||.++.+..... ..+...+
T Consensus 162 -------------------------~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~--~~~~~~~ 214 (433)
T 3bws_A 162 -------------------------PEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATV--DLTGKWS 214 (433)
T ss_dssp -------------------------CHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEE--ECSSSSE
T ss_pred -------------------------cccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEE--cCCCCCe
Confidence 1134578889999999999999999999999999999776544322 2223445
Q ss_pred eEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeec
Q psy13076 179 KDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK 258 (423)
Q Consensus 179 ~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~ 258 (423)
.+++|+|+++ ..+++++.++.|++||....+.....
T Consensus 215 ~~~~~~~~~~--------------------------------------------~l~~~~~~~~~i~~~d~~~~~~~~~~ 250 (433)
T 3bws_A 215 KILLYDPIRD--------------------------------------------LVYCSNWISEDISVIDRKTKLEIRKT 250 (433)
T ss_dssp EEEEEETTTT--------------------------------------------EEEEEETTTTEEEEEETTTTEEEEEC
T ss_pred eEEEEcCCCC--------------------------------------------EEEEEecCCCcEEEEECCCCcEEEEe
Confidence 5555555544 33445567888899987766655544
Q ss_pred cccccCeEEEEECCCCCEEEEEEe--------cCeEEEEECCCccceecccccccCCCeEEEEECCCCCeE-EEEeCCCc
Q psy13076 259 QEHSRFVQAVRYSPSGSHFASAGF--------DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQL-LTASGDKT 329 (423)
Q Consensus 259 ~~~~~~i~~l~~s~~g~~l~s~s~--------dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~s~s~d~~ 329 (423)
..+ ..+.+++|+|+|+++++++. ||.|++||..+++....+ .|...+.+++|+|+++.+ ++++.|+.
T Consensus 251 ~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~g~~l~~~~~~~~~ 326 (433)
T 3bws_A 251 DKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI---GPPGNKRHIVSGNTENKIYVSDMCCSK 326 (433)
T ss_dssp CCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE---EEEECEEEEEECSSTTEEEEEETTTTE
T ss_pred cCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec---cCCCCcceEEECCCCCEEEEEecCCCE
Confidence 443 34889999999999999884 889999999988776554 355678999999999754 66688999
Q ss_pred EEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeC---------------CCcEEEEecCCCCCceEEeccCCCc
Q psy13076 330 CKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSL---------------SGFISYLDVNNPSTPIRVIKGHNKP 394 (423)
Q Consensus 330 i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~---------------~~~i~~~~~~~~~~~~~~~~~h~~~ 394 (423)
|++||+.+++.+..+..... ...+.+.++|+++++++. ||.+++||..+.. .+..+.+ ...
T Consensus 327 v~v~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~-~~~~~~~-~~~ 402 (433)
T 3bws_A 327 IEVYDLKEKKVQKSIPVFDK--PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT-VKEFWEA-GNQ 402 (433)
T ss_dssp EEEEETTTTEEEEEEECSSS--EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE-EEEEEEC-SSS
T ss_pred EEEEECCCCcEEEEecCCCC--CCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc-EEEEecC-CCC
Confidence 99999999887776653322 345666778998887776 4699999997753 3444554 467
Q ss_pred eeEEEecCCCCeEEEec-CCCcEEEeeCC
Q psy13076 395 ITALALSPDRGTVFTGS-HDGFITRWNAK 422 (423)
Q Consensus 395 v~~i~~sp~~~~l~s~s-~D~~i~~W~~~ 422 (423)
+.+++|+|++++|++++ .|+.|++|+++
T Consensus 403 ~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 403 PTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred CceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 99999999999998776 59999999976
No 116
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=7.5e-32 Score=256.97 Aligned_cols=285 Identities=15% Similarity=0.235 Sum_probs=183.8
Q ss_pred CCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCcee---------EEeeecCCC------------CCeeEEEECCCC
Q psy13076 129 EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI---------LKNEFHPIG------------GPIKDIAWSPDN 187 (423)
Q Consensus 129 ~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~---------~~~~~~~~~------------~~v~~v~~s~~~ 187 (423)
.|.+.|++++|+|+|++||+|+.|+.|++||+.+.+.. ....+..+. .+|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 46789999999999999999999999999998765420 112233333 456666666665
Q ss_pred --CeEEEEEcCCceeeEEEeecCCcceec---ccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccc
Q psy13076 188 --QRMVVVGEGRERFGHVFMSETGTSVGE---ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS 262 (423)
Q Consensus 188 --~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~ 262 (423)
..+++++.+ ....+|....+..... +..+...+... .......+......+ . +.. ..........|.
T Consensus 106 ~~~~l~s~s~d--~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~-~-~~~--~~~~~~~~~~h~ 177 (447)
T 3dw8_B 106 NAAQFLLSTND--KTIKLWKISERDKRPEGYNLKEEDGRYRDP--TTVTTLRVPVFRPMD-L-MVE--ASPRRIFANAHT 177 (447)
T ss_dssp SSSEEEEEECS--SCEEEEEEEEEEEEEECCSCC--------C--CCCCSCCCCEEEEEE-E-EEE--EEEEEEECSCCS
T ss_pred CcceEEEeCCC--CeEEEEecccccCCcceecccCccccccCc--ccccceEeccccchh-e-eee--ccceEEeccCCC
Confidence 344444322 2233443332211100 00000000000 000000000000000 0 000 000011235788
Q ss_pred cCeEEEEECCCCCEEEEEEecCeEEEEECCCc-cceecc-----cccccCCCeEEEEECCCC-CeEEEEeCCCcEEEEec
Q psy13076 263 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASA-DLVSEL-----GNPAHKGGVYAVAWKPDG-TQLLTASGDKTCKLWDI 335 (423)
Q Consensus 263 ~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~-~~~~~~-----~~~~~~~~i~~l~~~~~~-~~l~s~s~d~~i~iwd~ 335 (423)
..|.+++|+|+|++|++| .|+.|++||+.+. +....+ ....|...|.+++|+|++ ++|++++.|++|++||+
T Consensus 178 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 256 (447)
T 3dw8_B 178 YHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM 256 (447)
T ss_dssp SCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred cceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence 899999999999999998 7999999999843 333321 234688999999999998 99999999999999999
Q ss_pred CCcce----eeeeeeCce-----------eEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCc------
Q psy13076 336 ETKSA----VSEFLMGNQ-----------VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKP------ 394 (423)
Q Consensus 336 ~~~~~----i~~~~~~~~-----------~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~------ 394 (423)
++++. +..+..... .....+.+.++|.+|++++. +.+++||++....++..+.+|...
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence 98876 454433221 14456667789999999999 999999998766677788888642
Q ss_pred ---------eeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076 395 ---------ITALALSPDRGTVFTGSHDGFITRWNAKT 423 (423)
Q Consensus 395 ---------v~~i~~sp~~~~l~s~s~D~~i~~W~~~~ 423 (423)
+..++|+|++++|++|+.||.|++||+.+
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~ 373 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNT 373 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTT
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCC
Confidence 33499999999999999999999999864
No 117
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-32 Score=273.20 Aligned_cols=254 Identities=19% Similarity=0.250 Sum_probs=196.6
Q ss_pred ccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEE
Q psy13076 125 DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVF 204 (423)
Q Consensus 125 ~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~ 204 (423)
.++.+|.+.|++++|+|+++++++|+.||+|++||+.+........+..+.++|.+++|+|+..
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~---------------- 66 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF---------------- 66 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTS----------------
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCC----------------
Confidence 4578999999999999999999999999999999987443322233333444555555544310
Q ss_pred eecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce--eeeeccccccCeEEEEECCC--CCEEEEE
Q psy13076 205 MSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK--FKMTKQEHSRFVQAVRYSPS--GSHFASA 280 (423)
Q Consensus 205 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~--~~~~~~~~~~~i~~l~~s~~--g~~l~s~ 280 (423)
+. .+++++.||.|++|+..... .......|...|.+++|+|+ ++++++|
T Consensus 67 --------------------------~~-~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg 119 (753)
T 3jro_A 67 --------------------------GT-ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA 119 (753)
T ss_dssp --------------------------CS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred --------------------------CC-EEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEE
Confidence 22 37888999999999976654 55566788999999999999 9999999
Q ss_pred EecCeEEEEECCCccceecccccccCCCeEEEEECC-------------CCCeEEEEeCCCcEEEEecCCcce----eee
Q psy13076 281 GFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP-------------DGTQLLTASGDKTCKLWDIETKSA----VSE 343 (423)
Q Consensus 281 s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~-------------~~~~l~s~s~d~~i~iwd~~~~~~----i~~ 343 (423)
+.||.|++||+.++..........|...|.+++|+| ++++|++++.|++|++||++++.. +..
T Consensus 120 s~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 199 (753)
T 3jro_A 120 SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199 (753)
T ss_dssp ETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred eCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeee
Confidence 999999999998875444434456889999999999 589999999999999999987643 222
Q ss_pred eeeCceeEeeEEEEEec---CcEEEEEeCCCcEEEEecCCCCC----ceEEeccCCCceeEEEecCCCCeEEEecCCCcE
Q psy13076 344 FLMGNQVEDQQVSCLWQ---GDYLLTVSLSGFISYLDVNNPST----PIRVIKGHNKPITALALSPDRGTVFTGSHDGFI 416 (423)
Q Consensus 344 ~~~~~~~~~~~~~~~~~---g~~l~~~~~~~~i~~~~~~~~~~----~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i 416 (423)
+ ..+......+...++ +.++++++.+|.|++||..+... ......+|...|++++|+|++++|++++.||.|
T Consensus 200 ~-~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I 278 (753)
T 3jro_A 200 L-EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKV 278 (753)
T ss_dssp E-CCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCE
T ss_pred e-cCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEE
Confidence 2 223334455666777 89999999999999999987532 222345699999999999999999999999999
Q ss_pred EEeeCC
Q psy13076 417 TRWNAK 422 (423)
Q Consensus 417 ~~W~~~ 422 (423)
++|++.
T Consensus 279 ~vwd~~ 284 (753)
T 3jro_A 279 TLWKEN 284 (753)
T ss_dssp ECCBCC
T ss_pred EEEecC
Confidence 999976
No 118
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=5e-31 Score=250.28 Aligned_cols=249 Identities=20% Similarity=0.325 Sum_probs=193.9
Q ss_pred eeEEEEe-CCEEEEEeccceEEEEeccCC---------CCceeecccccCceeEEEEeCCCC-eEEEecCCCceEEeecC
Q psy13076 9 QVSCLWQ-GDYLLTVSLSGFISYLDVNNP---------STPIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNAK 77 (423)
Q Consensus 9 ~~~~~~~-~~~~~~~~~dg~i~~~d~~~~---------~~~~~~~~gh~~~V~~l~~~~~~~-~l~sg~~D~~i~vW~~~ 77 (423)
.++++++ +.++|+++.||.|++||+... ..+...+.+|.++|.+++|+|+++ +|++|+.||+|++|++.
T Consensus 133 ~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 212 (430)
T 2xyi_A 133 RARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN 212 (430)
T ss_dssp EEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETT
T ss_pred EEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCC
Confidence 4556665 789999999999999999752 466778999999999999999988 99999999999999998
Q ss_pred CcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECC-CCCEEEEEccCCcEE
Q psy13076 78 TEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVR 156 (423)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~ 156 (423)
++...... ......+.+|...|.+++|+| ++.++++++.|+.|+
T Consensus 213 ~~~~~~~~-----------------------------------~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~ 257 (430)
T 2xyi_A 213 ATPKEHRV-----------------------------------IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 257 (430)
T ss_dssp SCCBGGGE-----------------------------------EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred CCCCCCce-----------------------------------eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEE
Confidence 63210000 001224567999999999999 788999999999999
Q ss_pred EEEcCCCcee-EEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeE
Q psy13076 157 IWDTVNKEHI-LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRI 235 (423)
Q Consensus 157 vwd~~~~~~~-~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 235 (423)
+||+++.... .... +..|...+++++|+|++.+.+
T Consensus 258 i~d~~~~~~~~~~~~--------------------------------------------~~~~~~~v~~i~~~p~~~~~l 293 (430)
T 2xyi_A 258 IWDTRNNNTSKPSHT--------------------------------------------VDAHTAEVNCLSFNPYSEFIL 293 (430)
T ss_dssp EEETTCSCSSSCSEE--------------------------------------------EECCSSCEEEEEECSSCTTEE
T ss_pred EEECCCCCCCcceeE--------------------------------------------eecCCCCeEEEEeCCCCCCEE
Confidence 9999764210 0001 112334566666666666668
Q ss_pred EEEeCCCeEEEEcCCC-ceeeeeccccccCeEEEEECCCCC-EEEEEEecCeEEEEECCCc--------------cceec
Q psy13076 236 ITGSEDNTIAVFEGPP-FKFKMTKQEHSRFVQAVRYSPSGS-HFASAGFDGKVFLYDGASA--------------DLVSE 299 (423)
Q Consensus 236 ~s~s~d~~i~~~~~~~-~~~~~~~~~~~~~i~~l~~s~~g~-~l~s~s~dg~i~vwd~~~~--------------~~~~~ 299 (423)
++++.|+.|++|+.+. ......+..|...|.+++|+|+++ +|++++.||.|++||+... +.+..
T Consensus 294 ~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 373 (430)
T 2xyi_A 294 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 373 (430)
T ss_dssp EEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEE
T ss_pred EEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEE
Confidence 8899999999999875 334455667889999999999996 6899999999999998762 22222
Q ss_pred ccccccCCCeEEEEECCCCC-eEEEEeCCCcEEEEecCCc
Q psy13076 300 LGNPAHKGGVYAVAWKPDGT-QLLTASGDKTCKLWDIETK 338 (423)
Q Consensus 300 ~~~~~~~~~i~~l~~~~~~~-~l~s~s~d~~i~iwd~~~~ 338 (423)
+ .+|...|.+++|+|+++ +|++++.|+.|++|++...
T Consensus 374 ~--~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 374 H--GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp C--CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred c--CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 2 46888999999999999 8999999999999998765
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-30 Score=247.33 Aligned_cols=286 Identities=14% Similarity=0.110 Sum_probs=205.9
Q ss_pred ceeeEEEEeCCEEEEEeccceEEEEeccCCCC--ceeecc----------------------------------------
Q psy13076 7 DQQVSCLWQGDYLLTVSLSGFISYLDVNNPST--PIRVIK---------------------------------------- 44 (423)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~--~~~~~~---------------------------------------- 44 (423)
=+++++++||++|++ +.++.|++||+.++.+ .+..+.
T Consensus 7 ~~~v~~s~dg~~l~~-~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (450)
T 2vdu_B 7 LQNLLTSRDGSLVFA-IIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIK 85 (450)
T ss_dssp CCEEEECSSSSEEEE-EETTEEEEEEEETTTEEEEEEEEECCC-------------------------------------
T ss_pred EEEEEecCCCCEEEE-EeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccc
Confidence 367888889997665 5688999999876441 233333
Q ss_pred --------------cccCceeEEEEeCCCCeE-EEecCCCceEEeecC--CcceeecccCCCCCCceEEeeCCCCCeEEE
Q psy13076 45 --------------GHNKPITALALSPDRGTV-FTGSHDGFITRWNAK--TEYIFATLPRTQRGQPIVLGGDPKGKNFLY 107 (423)
Q Consensus 45 --------------gh~~~V~~l~~~~~~~~l-~sg~~D~~i~vW~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (423)
+|.+.|.+++|+|++++| ++|+.|++|++||+. ++..+..+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~--------------------- 144 (450)
T 2vdu_B 86 RTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK--------------------- 144 (450)
T ss_dssp --------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE---------------------
T ss_pred ccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee---------------------
Confidence 345579999999999986 999999999999987 543332210
Q ss_pred ecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCC
Q psy13076 108 TNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN 187 (423)
Q Consensus 108 ~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 187 (423)
...|...|.+++|+|++++|++++.|+.+++|++.+.+....
T Consensus 145 -------------------~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~------------------- 186 (450)
T 2vdu_B 145 -------------------RFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKF------------------- 186 (450)
T ss_dssp -------------------EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSC-------------------
T ss_pred -------------------cccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccc-------------------
Confidence 013567899999999999999999999999999876442100
Q ss_pred CeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecC---CCeeEEEEeCCCeEEEEcCCCceeeee-cccccc
Q psy13076 188 QRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPS---RPFRIITGSEDNTIAVFEGPPFKFKMT-KQEHSR 263 (423)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~s~s~d~~i~~~~~~~~~~~~~-~~~~~~ 263 (423)
....+.+|...|.+++|+|+ +. .+++++.|+.|++|+....+.... ...|..
T Consensus 187 -----------------------~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~ 242 (450)
T 2vdu_B 187 -----------------------TQEPILGHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQCFIVDKWLFGHKH 242 (450)
T ss_dssp -----------------------CCCCSEECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred -----------------------cceeeecccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence 00112234456667777776 44 478899999999999876655444 557899
Q ss_pred CeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccccc-----------------------ccCCCeEEEEECCCCCe
Q psy13076 264 FVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP-----------------------AHKGGVYAVAWKPDGTQ 320 (423)
Q Consensus 264 ~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-----------------------~~~~~i~~l~~~~~~~~ 320 (423)
.|.+++|+ +|++|++++.|+.|++||+.+++.+..+... .....+.+++|+|++++
T Consensus 243 ~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 321 (450)
T 2vdu_B 243 FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF 321 (450)
T ss_dssp CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE
T ss_pred ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE
Confidence 99999999 9999999999999999999998876655321 22356899999999999
Q ss_pred EEEEe-CCCcEEEEec--CCc---ceeeeeeeCceeEeeEEEEEecCcEEEEEeC-------CCcEEEEecCC
Q psy13076 321 LLTAS-GDKTCKLWDI--ETK---SAVSEFLMGNQVEDQQVSCLWQGDYLLTVSL-------SGFISYLDVNN 380 (423)
Q Consensus 321 l~s~s-~d~~i~iwd~--~~~---~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~-------~~~i~~~~~~~ 380 (423)
|++++ .|+.|++||+ ..+ +.+..+... .....+.+.+ +..+++.+. +..+.+|.+..
T Consensus 322 l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~--~~v~~~~~~~-~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 322 VAFFVEATKCIIILEMSEKQKGDLALKQIITFP--YNVISLSAHN-DEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEETTCSEEEEEEECSSSTTCEEEEEEEECS--SCEEEEEEET-TEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEEECCCCeEEEEEeccCCCCceeeccEeccC--CceEEEEecC-CcEEEEEecccCCCCCCcceEEEEEEc
Confidence 99999 8999999999 554 444444333 2233444444 334444332 44577776654
No 120
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.98 E-value=1.3e-31 Score=251.25 Aligned_cols=257 Identities=12% Similarity=0.069 Sum_probs=170.5
Q ss_pred EeCCEEEEEeccceEEEEeccCCCC----ceeecccccCceeEEEEeC--------CCCeEEEecCCCceEEeecCCcce
Q psy13076 14 WQGDYLLTVSLSGFISYLDVNNPST----PIRVIKGHNKPITALALSP--------DRGTVFTGSHDGFITRWNAKTEYI 81 (423)
Q Consensus 14 ~~~~~~~~~~~dg~i~~~d~~~~~~----~~~~~~gh~~~V~~l~~~~--------~~~~l~sg~~D~~i~vW~~~~~~~ 81 (423)
+++.+||+++.|+.|++||.+++.. ++..++||.+.|++++|+| ++++|+|||.|++||+||+.++..
T Consensus 99 ~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~ 178 (393)
T 4gq1_A 99 VYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGP 178 (393)
T ss_dssp EEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEE
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCce
Confidence 4688999999999999999876432 2346889999999999998 788999999999999999876432
Q ss_pred eecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCC-CEEEEEccCCcEEEEEc
Q psy13076 82 FATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSG-FYIASGDISGKVRIWDT 160 (423)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~~~d~~i~vwd~ 160 (423)
.. .+.+|...|.+++|+|++ .+|++++.|++|++||+
T Consensus 179 ~~------------------------------------------~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~ 216 (393)
T 4gq1_A 179 IL------------------------------------------AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDW 216 (393)
T ss_dssp EE------------------------------------------EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEET
T ss_pred ee------------------------------------------eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEEC
Confidence 21 123577789999999987 48999999999999999
Q ss_pred CCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeC
Q psy13076 161 VNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSE 240 (423)
Q Consensus 161 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~ 240 (423)
.+++................+.+.+. .........++...+.++.|.+.....+++++.
T Consensus 217 ~t~~~~~~~~~~~~~~~~~~~s~~~~---------------------~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~ 275 (393)
T 4gq1_A 217 TLNLSAEENSQTELVKNPWLLTLNTL---------------------PLVNTCHSSGIASSLANVRWIGSDGSGILAMCK 275 (393)
T ss_dssp TCCC----------CSCCCSEEEESG---------------------GGC------CCSSSCSEEEEETTTTCEEEEECT
T ss_pred CCCcccccccccCCcccceEEecccc---------------------cceeeeecccccccceeeeeecCCCCEEEEEeC
Confidence 87654332211110000001111110 001111234566778888887444345899999
Q ss_pred CCeEEEEcCCCceeeeeccccccC------------------eEEEEECC--CCCEEEEEEecCeEEEEECCCccceecc
Q psy13076 241 DNTIAVFEGPPFKFKMTKQEHSRF------------------VQAVRYSP--SGSHFASAGFDGKVFLYDGASADLVSEL 300 (423)
Q Consensus 241 d~~i~~~~~~~~~~~~~~~~~~~~------------------i~~l~~s~--~g~~l~s~s~dg~i~vwd~~~~~~~~~~ 300 (423)
|+++++|+....+....+..+... .....++| ++.++++|+.||.|++||..+++....+
T Consensus 276 d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~ 355 (393)
T 4gq1_A 276 SGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP 355 (393)
T ss_dssp TSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE
T ss_pred CCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe
Confidence 999999986543322222222111 11223333 3446778889999999999988876655
Q ss_pred cccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecC
Q psy13076 301 GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIE 336 (423)
Q Consensus 301 ~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~ 336 (423)
. .|...|.+++|+|+|++||+++.+| +.+|.+.
T Consensus 356 ~--~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 356 I--QLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp E--ECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred c--CCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 3 5778999999999999999999776 6666543
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=2.4e-29 Score=238.80 Aligned_cols=278 Identities=14% Similarity=0.099 Sum_probs=218.4
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccCCCCcee-----ecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceee
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIR-----VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFA 83 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~-----~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~ 83 (423)
.+++++++.++++++.|+.|++||+.+. +... .+.+|.+.|.+++|+++++++++++.|++|++||.++++...
T Consensus 127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~ 205 (433)
T 3bws_A 127 SVRFIDNTRLAIPLLEDEGMDVLDINSG-QTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA 205 (433)
T ss_dssp CCEESSSSEEEEEBTTSSSEEEEETTTC-CEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE
T ss_pred EEEEeCCCeEEEEeCCCCeEEEEECCCC-eEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE
Confidence 4566677788888888999999999763 4444 456899999999999999999999999999999998754432
Q ss_pred cccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEE-EEccCCcEEEEEcCC
Q psy13076 84 TLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTVN 162 (423)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-s~~~d~~i~vwd~~~ 162 (423)
. +..|...+.+++|+|++++++ +++.|+.|++||+.+
T Consensus 206 ~------------------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~ 243 (433)
T 3bws_A 206 T------------------------------------------VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT 243 (433)
T ss_dssp E------------------------------------------EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred E------------------------------------------EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC
Confidence 2 234667789999999999885 555899999999987
Q ss_pred CceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC------ceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEE
Q psy13076 163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR------ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRII 236 (423)
Q Consensus 163 ~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 236 (423)
++...... ....+.+++|+|+++.+++++... +....+|+..+++.+..+ .+...+..++|+|++..+++
T Consensus 244 ~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~ 319 (433)
T 3bws_A 244 KLEIRKTD---KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYV 319 (433)
T ss_dssp TEEEEECC---CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEE
T ss_pred CcEEEEec---CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEE
Confidence 76543322 235689999999999988876432 334556766666554443 33457888999999988788
Q ss_pred EEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEe---------------cCeEEEEECCCccceeccc
Q psy13076 237 TGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGF---------------DGKVFLYDGASADLVSELG 301 (423)
Q Consensus 237 s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~---------------dg~i~vwd~~~~~~~~~~~ 301 (423)
+++.++.+++|+....+...... +...+.+++|+|+|+++++++. ||.|++||..+++....+.
T Consensus 320 ~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~ 398 (433)
T 3bws_A 320 SDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE 398 (433)
T ss_dssp EETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE
T ss_pred EecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec
Confidence 88999999999987766554443 5667899999999999888876 5799999999988776664
Q ss_pred ccccCCCeEEEEECCCCCeEEEEeC-CCcEEEEecCC
Q psy13076 302 NPAHKGGVYAVAWKPDGTQLLTASG-DKTCKLWDIET 337 (423)
Q Consensus 302 ~~~~~~~i~~l~~~~~~~~l~s~s~-d~~i~iwd~~~ 337 (423)
+...+.+++|+|+|++|++++. |++|++|++..
T Consensus 399 ---~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 399 ---AGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp ---CSSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ---CCCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 2457899999999999988875 99999999863
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=2.6e-28 Score=228.46 Aligned_cols=308 Identities=17% Similarity=0.184 Sum_probs=231.1
Q ss_pred CeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEE
Q psy13076 60 GTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKY 139 (423)
Q Consensus 60 ~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~ 139 (423)
.++++++.|++|++||+++++++..+ .+|. .+.+++|
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~------------------------------------------~~~~-~~~~~~~ 39 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATI------------------------------------------PVGS-NPMGAVI 39 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEE------------------------------------------ECSS-SEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEe------------------------------------------ecCC-CcceEEE
Confidence 46889999999999999876554322 2233 4789999
Q ss_pred CCCCCEE-EEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCC
Q psy13076 140 SPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ 218 (423)
Q Consensus 140 sp~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (423)
+|+++++ ++++.|++|++||..+++....... ...+.+++|+|+++.+++++... ....+|+..+++.+..+..+
T Consensus 40 s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~---~~~v~~~~~spdg~~l~~~~~~~-~~v~v~d~~~~~~~~~~~~~ 115 (391)
T 1l0q_A 40 SPDGTKVYVANAHSNDVSIIDTATNNVIATVPA---GSSPQGVAVSPDGKQVYVTNMAS-STLSVIDTTSNTVAGTVKTG 115 (391)
T ss_dssp CTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC---SSSEEEEEECTTSSEEEEEETTT-TEEEEEETTTTEEEEEEECS
T ss_pred CCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC---CCCccceEECCCCCEEEEEECCC-CEEEEEECCCCeEEEEEeCC
Confidence 9999977 6788999999999988776543332 24799999999999888776543 34567777777766665544
Q ss_pred CcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEE-EEEEecCeEEEEECCCccce
Q psy13076 219 SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHF-ASAGFDGKVFLYDGASADLV 297 (423)
Q Consensus 219 ~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l-~s~s~dg~i~vwd~~~~~~~ 297 (423)
..+.+++|+|++..++++++.++.|++|+....+.......+ ..+..++|+|+|+++ ++++.|+.|++||.++++..
T Consensus 116 -~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~ 193 (391)
T 1l0q_A 116 -KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI 193 (391)
T ss_dssp -SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred -CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE
Confidence 467899999999886788999999999998777666555444 446899999999987 66778999999999988776
Q ss_pred ecccccccCCCeEEEEECCCCCeEEEEe---CCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEE-EEEeCCCcE
Q psy13076 298 SELGNPAHKGGVYAVAWKPDGTQLLTAS---GDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYL-LTVSLSGFI 373 (423)
Q Consensus 298 ~~~~~~~~~~~i~~l~~~~~~~~l~s~s---~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l-~~~~~~~~i 373 (423)
..+. +...+.+++|+|++++|++++ .++.|++||+.+++.+..+..... ...+.+.++|+++ ++++.++.+
T Consensus 194 ~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~s~~~d~~v 268 (391)
T 1l0q_A 194 DTVK---VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD--PAGIAVTPDGKKVYVALSFXNTV 268 (391)
T ss_dssp EEEE---CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS--EEEEEECTTSSEEEEEETTTTEE
T ss_pred EEEe---cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC--ccEEEEccCCCEEEEEcCCCCEE
Confidence 6553 456789999999999999888 689999999999887776654332 3445666789887 566889999
Q ss_pred EEEecCCCCCceEEeccCCCcee---EEEecC------------CC----------CeEEEecCCCcEEEeeCC
Q psy13076 374 SYLDVNNPSTPIRVIKGHNKPIT---ALALSP------------DR----------GTVFTGSHDGFITRWNAK 422 (423)
Q Consensus 374 ~~~~~~~~~~~~~~~~~h~~~v~---~i~~sp------------~~----------~~l~s~s~D~~i~~W~~~ 422 (423)
++||+.+. ..+..+..|..+.. .+.+.| +. ..+.+.+.|...++|++.
T Consensus 269 ~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 341 (391)
T 1l0q_A 269 SVIDTATN-TITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFG 341 (391)
T ss_dssp EEEETTTT-EEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECS
T ss_pred EEEECCCC-cEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECC
Confidence 99999875 33455555554422 122222 11 235666789999999974
No 123
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=5.2e-29 Score=236.78 Aligned_cols=199 Identities=23% Similarity=0.361 Sum_probs=157.6
Q ss_pred ccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcc
Q psy13076 44 KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAI 123 (423)
Q Consensus 44 ~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 123 (423)
.+|..+|.++++ ++++|++|+.||+|++||.++++...
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---------------------------------------- 167 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---------------------------------------- 167 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE----------------------------------------
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE----------------------------------------
Confidence 457778998887 78899999999999999998754332
Q ss_pred cccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEE
Q psy13076 124 SDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHV 203 (423)
Q Consensus 124 ~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~ 203 (423)
.+.+|...|.+++| +++++++|+.||+|++||+.+++.... +..+..
T Consensus 168 --~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~--~~~h~~--------------------------- 214 (435)
T 1p22_A 168 --ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT--LIHHCE--------------------------- 214 (435)
T ss_dssp --EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEE--ECCCCS---------------------------
T ss_pred --EEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEE--EcCCCC---------------------------
Confidence 34578889999998 788999999999999999987654322 222233
Q ss_pred EeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCcee---eeeccccccCeEEEEECCCCCEEEEE
Q psy13076 204 FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF---KMTKQEHSRFVQAVRYSPSGSHFASA 280 (423)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~---~~~~~~~~~~i~~l~~s~~g~~l~s~ 280 (423)
.+.++.|++. .+++++.|+.|++|+...... ......|...|.++++ +++++++|
T Consensus 215 -----------------~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~ 272 (435)
T 1p22_A 215 -----------------AVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSA 272 (435)
T ss_dssp -----------------CEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEE
T ss_pred -----------------cEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEE
Confidence 3444444422 478899999999999764432 2556788889999998 78899999
Q ss_pred EecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeee
Q psy13076 281 GFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSE 343 (423)
Q Consensus 281 s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~ 343 (423)
+.||.|++||.++++.+..+. .|...+.+++| ++++|++++.|++|++||+++++++..
T Consensus 273 ~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~ 331 (435)
T 1p22_A 273 SGDRTIKVWNTSTCEFVRTLN--GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV 331 (435)
T ss_dssp ETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred eCCCeEEEEECCcCcEEEEEc--CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence 999999999999998887774 58889999998 467999999999999999988765443
No 124
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1.9e-29 Score=237.31 Aligned_cols=247 Identities=20% Similarity=0.304 Sum_probs=191.0
Q ss_pred EEEEECCCCCEE-EEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCccee
Q psy13076 135 NVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVG 213 (423)
Q Consensus 135 ~~~~~sp~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (423)
..++++|+...+ ++++.||.|++|++.+..... ....
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~------------------------------------------~~~~ 75 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD------------------------------------------KNVP 75 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC------------------------------------------TTCC
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC------------------------------------------CCCc
Confidence 346788876544 457889999999985432110 0011
Q ss_pred cccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc-------eeeeeccccccCeEEEEECCCC-CEEEEEEecCe
Q psy13076 214 EISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF-------KFKMTKQEHSRFVQAVRYSPSG-SHFASAGFDGK 285 (423)
Q Consensus 214 ~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~-------~~~~~~~~~~~~i~~l~~s~~g-~~l~s~s~dg~ 285 (423)
.+.+|...|.+++|+|.+...+++++.|+.|++|+.... .....+..|...|.+++|+|++ .+|++++.||.
T Consensus 76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~ 155 (402)
T 2aq5_A 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155 (402)
T ss_dssp CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence 233455566666666622234888999999999997665 3445667899999999999998 69999999999
Q ss_pred EEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCc-eeEeeEEEEEecCcEE
Q psy13076 286 VFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGN-QVEDQQVSCLWQGDYL 364 (423)
Q Consensus 286 i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~-~~~~~~~~~~~~g~~l 364 (423)
|++||+.+++....+....|...|.+++|+|++++|++++.|++|++||+++++.+..+...+ ......+...++|.++
T Consensus 156 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 235 (402)
T 2aq5_A 156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKIL 235 (402)
T ss_dssp EEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEE
T ss_pred EEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEE
Confidence 999999999887776324688999999999999999999999999999999998887763222 2224456666789999
Q ss_pred EEE---eCCCcEEEEecCCCCCceEEe-ccCCCceeEEEecCCCCeEE-EecCCCcEEEeeCCC
Q psy13076 365 LTV---SLSGFISYLDVNNPSTPIRVI-KGHNKPITALALSPDRGTVF-TGSHDGFITRWNAKT 423 (423)
Q Consensus 365 ~~~---~~~~~i~~~~~~~~~~~~~~~-~~h~~~v~~i~~sp~~~~l~-s~s~D~~i~~W~~~~ 423 (423)
+++ +.++.+++||+.+...++... ..|...|.+++|+|++++|+ +++.|+.|++||+.+
T Consensus 236 ~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~ 299 (402)
T 2aq5_A 236 TTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS 299 (402)
T ss_dssp EEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECS
T ss_pred EEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC
Confidence 998 789999999998876644443 36888999999999999986 566899999999763
No 125
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=9.6e-29 Score=228.39 Aligned_cols=286 Identities=12% Similarity=0.104 Sum_probs=200.8
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeE-EEecCCCceEEeecCCcceeecccC
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTV-FTGSHDGFITRWNAKTEYIFATLPR 87 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l-~sg~~D~~i~vW~~~~~~~~~~~~~ 87 (423)
++++++||++|++|+.+| +++||+.. .+.. +..+...+..+++.++++.+ ++|+.|++|++||.++++.+..+..
T Consensus 24 ~v~fs~dg~~la~g~~~~-~~iw~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~ 99 (355)
T 3vu4_A 24 DYEFNQDQSCLILSTLKS-FEIYNVHP-VAHI--MSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKV 99 (355)
T ss_dssp EEEECTTSSEEEEECSSE-EEEEEETT-EEEE--EEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEEC
T ss_pred EEEECCCCCEEEEEcCCE-EEEEecCC-ccee--eeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEEC
Confidence 566777999999988775 78999864 2222 23333468889999988876 6788999999999999887776643
Q ss_pred CCCCCceEEeeCCCCCeEEEecCCeEEEEecCCC-cccccccCCcceEEEEEECCCCCEEEE--EccCCcEEEEEcCCCc
Q psy13076 88 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENP-AISDIYTEHSCAVNVAKYSPSGFYIAS--GDISGKVRIWDTVNKE 164 (423)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~h~~~i~~~~~sp~~~~l~s--~~~d~~i~vwd~~~~~ 164 (423)
......+.++++. ++...++.+++|++.++ +....+.. ....++++| .+++. |+.||+|++||+.+..
T Consensus 100 --~~~v~~v~~~~~~--~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~ 170 (355)
T 3vu4_A 100 --DAPVKDLFLSREF--IVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSG 170 (355)
T ss_dssp --SSCEEEEEECSSE--EEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC--
T ss_pred --CCceEEEEEcCCE--EEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCC
Confidence 2334445555543 44445678888888876 66655554 444556666 55555 5788889999886654
Q ss_pred eeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcc-eecccCCCcceeEEEEecCCCeeEEEEeCCCe
Q psy13076 165 HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTS-VGEISGQSKPINSCDFKPSRPFRIITGSEDNT 243 (423)
Q Consensus 165 ~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~ 243 (423)
....... . ++.. .-.. +..+.+|..+|.+++|+|++.+ +++++.|++
T Consensus 171 ~~~~~~~-----~-------~~~~-------------------~~~p~~~~~~~h~~~v~~~~~s~~g~~-l~s~s~d~~ 218 (355)
T 3vu4_A 171 SATTQDQ-----G-------VQQK-------------------AILGKGVLIKAHTNPIKMVRLNRKSDM-VATCSQDGT 218 (355)
T ss_dssp -----------------------------------------------CCEEECCCSSCEEEEEECTTSSE-EEEEETTCS
T ss_pred ccccccc-----c-------cccc-------------------ccCcccEEEEccCCceEEEEECCCCCE-EEEEeCCCC
Confidence 3211000 0 0000 0011 3456788999999999999875 899999998
Q ss_pred -EEEEcCCCceeeeecc-c-cccCeEEEEECCCCCEEEEEEecCeEEEEECCCcccee--cccc----------------
Q psy13076 244 -IAVFEGPPFKFKMTKQ-E-HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVS--ELGN---------------- 302 (423)
Q Consensus 244 -i~~~~~~~~~~~~~~~-~-~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~--~~~~---------------- 302 (423)
|++||....+....+. + |...|.+++|+|+|++|++++.|+.|++||+..+.... .+..
T Consensus 219 ~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (355)
T 3vu4_A 219 IIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNF 298 (355)
T ss_dssp EEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEE
T ss_pred EEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEE
Confidence 9999998777776766 4 89999999999999999999999999999987653211 1100
Q ss_pred ---cccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcc
Q psy13076 303 ---PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKS 339 (423)
Q Consensus 303 ---~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~ 339 (423)
..+......++|+|++++|++++.||.+++|++..++
T Consensus 299 ~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 299 KLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp ECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred EeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 0111223568999999999999999999999987654
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=4.8e-28 Score=235.31 Aligned_cols=330 Identities=13% Similarity=0.077 Sum_probs=252.2
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeec--CCcceeeccc
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA--KTEYIFATLP 86 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~--~~~~~~~~~~ 86 (423)
+.+++++|.++++++.|+.|.+||..+ .+++.++..+.. +..++|+|++++|++++.|++|++||+ ++++++..+.
T Consensus 142 ~~~~~p~~~~~vs~~~d~~V~v~D~~t-~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 142 LNDLDLPNLFSVTLRDAGQIALVDGDS-KKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CSCCCGGGEEEEEEGGGTEEEEEETTT-CCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred ccccCCCCEEEEEEcCCCeEEEEECCC-ceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 445778999999999999999999976 566778873333 889999999999999999999999999 8888777765
Q ss_pred CCCCCCceEEeeCC----CCCeEEEec--CCeEEEEecCCCcccccccC----------Cc-ceEEEEEECCCCC-EEEE
Q psy13076 87 RTQRGQPIVLGGDP----KGKNFLYTN--GNSVIIRNIENPAISDIYTE----------HS-CAVNVAKYSPSGF-YIAS 148 (423)
Q Consensus 87 ~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~----------h~-~~i~~~~~sp~~~-~l~s 148 (423)
. ...+..+.++| +|+.++..+ ++.+.+||..+.++...+.. |. ..+..+.++|++. ++++
T Consensus 220 ~--g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs 297 (543)
T 1nir_A 220 I--GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN 297 (543)
T ss_dssp C--CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred c--CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEE
Confidence 3 23355678899 998877654 68999999998888776654 33 3788999999765 5567
Q ss_pred EccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccC----CCcceeE
Q psy13076 149 GDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISG----QSKPINS 224 (423)
Q Consensus 149 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~ 224 (423)
...+++|.+||..+.+.+..... .....+.+++|+|+++++++++.... ...+|+..+++.+..+.. |......
T Consensus 298 ~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~-~v~v~D~~tg~l~~~i~~g~~ph~g~g~~ 375 (543)
T 1nir_A 298 VKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSN-KVAVIDSKDRRLSALVDVGKTPHPGRGAN 375 (543)
T ss_dssp ETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGT-EEEEEETTTTEEEEEEECSSSBCCTTCEE
T ss_pred ECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCC-eEEEEECCCCeEEEeeccCCCCCCCCCcc
Confidence 78899999999987554332222 23456788999999999887765433 356788888877666553 3222222
Q ss_pred EEEecCCCeeEEEEe-CCCeEEEEcCCC-------ceeeeeccccccCeEEEEECCCCCEEEEEE-------ecCeEEEE
Q psy13076 225 CDFKPSRPFRIITGS-EDNTIAVFEGPP-------FKFKMTKQEHSRFVQAVRYSPSGSHFASAG-------FDGKVFLY 289 (423)
Q Consensus 225 ~~~~~~~~~~~~s~s-~d~~i~~~~~~~-------~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s-------~dg~i~vw 289 (423)
+ ++|++...+++++ .|++|.+|+..+ ++...++..+...+..++++|+|++|++++ .++.|.+|
T Consensus 376 ~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~ 454 (543)
T 1nir_A 376 F-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVF 454 (543)
T ss_dssp E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEE
T ss_pred c-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEE
Confidence 2 4677555577775 689999999876 777778888877788899999999999987 37899999
Q ss_pred ECCCccce-ecccc------cccCCCeEEEEECCCCCeEEEEe-----CCCcEEEEecCCcceeeeee
Q psy13076 290 DGASADLV-SELGN------PAHKGGVYAVAWKPDGTQLLTAS-----GDKTCKLWDIETKSAVSEFL 345 (423)
Q Consensus 290 d~~~~~~~-~~~~~------~~~~~~i~~l~~~~~~~~l~s~s-----~d~~i~iwd~~~~~~i~~~~ 345 (423)
|..+++.. ..+.. ..+...+..+.|+|+|+.|..+. .|++|.|||.+++++++.+.
T Consensus 455 d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 455 DLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp ETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred ECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 99988866 33311 23467789999999999888663 47999999999999877654
No 127
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.97 E-value=5.6e-28 Score=253.55 Aligned_cols=359 Identities=14% Similarity=0.070 Sum_probs=256.8
Q ss_pred cccccCceeEEEEeCCCCeEEEecCCCceEEeecCC-cceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCC
Q psy13076 43 IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT-EYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENP 121 (423)
Q Consensus 43 ~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 121 (423)
+.+|.+.+.++.|+++ .++++++.|+++++|.+.. +.....+..+. ......++|+|+.+++..+..+.+|+++..
T Consensus 199 l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~--~~~~~~~SpDG~~la~~~~~~i~~~d~~~~ 275 (1045)
T 1k32_A 199 IVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT--DYYPRHLNTDGRRILFSKGGSIYIFNPDTE 275 (1045)
T ss_dssp EECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC--SSCEEEEEESSSCEEEEETTEEEEECTTTC
T ss_pred CcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC--CcceeeEcCCCCEEEEEeCCEEEEecCCce
Confidence 4568888999999988 7778888999999998653 22222222211 233457789999888888889999998544
Q ss_pred cccccccC-----------CcceEEEEEEC-CCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCC-CeeEEEECCCCC
Q psy13076 122 AISDIYTE-----------HSCAVNVAKYS-PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGG-PIKDIAWSPDNQ 188 (423)
Q Consensus 122 ~~~~~~~~-----------h~~~i~~~~~s-p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~v~~v~~s~~~~ 188 (423)
.+. .+.+ |...+..++|+ |||+++++++ ++.|.+|+...++... ...+.. .+..++|+ ||+
T Consensus 276 ~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~s-dg~ 349 (1045)
T 1k32_A 276 KIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK---VPEPLRIRYVRRGGD-TKV 349 (1045)
T ss_dssp CEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE---CSCCSCEEEEEECSS-SEE
T ss_pred Eee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE---ccCCCcceEEeeeEc-CCC
Confidence 443 3443 44568899999 9999999887 7899999987665332 223344 78899999 999
Q ss_pred eEEEEEcCCceeeE-EEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEE
Q psy13076 189 RMVVVGEGRERFGH-VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQA 267 (423)
Q Consensus 189 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~ 267 (423)
.++.++. . .... ++....+. ...+..+...+..++|+|++.. +++++.++.+++|+....+.......|...+..
T Consensus 350 ~l~~~s~-~-~~l~~~~d~~~~~-~~~l~~~~~~~~~~~~SpDG~~-la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~ 425 (1045)
T 1k32_A 350 AFIHGTR-E-GDFLGIYDYRTGK-AEKFEENLGNVFAMGVDRNGKF-AVVANDRFEIMTVDLETGKPTVIERSREAMITD 425 (1045)
T ss_dssp EEEEEET-T-EEEEEEEETTTCC-EEECCCCCCSEEEEEECTTSSE-EEEEETTSEEEEEETTTCCEEEEEECSSSCCCC
T ss_pred eEEEEEC-C-CceEEEEECCCCC-ceEecCCccceeeeEECCCCCE-EEEECCCCeEEEEECCCCceEEeccCCCCCccc
Confidence 9988876 2 2222 34444433 3344466678999999999986 778889999999998777666556577888899
Q ss_pred EEECCCCCEEEEEEecC----------eEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCC
Q psy13076 268 VRYSPSGSHFASAGFDG----------KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET 337 (423)
Q Consensus 268 l~~s~~g~~l~s~s~dg----------~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~ 337 (423)
++|+|||++|++++.++ .|++||..+++ ...+. .|...+..++|+|+|++|+.++.++..++|+...
T Consensus 426 ~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~--~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 426 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAAT--TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECS--CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred eEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEee--CCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence 99999999999888765 89999998876 44443 4667788999999999999999988888887543
Q ss_pred cceeee-------------------------------e----------ee-CceeEeeEEEEEecCcEEEE---------
Q psy13076 338 KSAVSE-------------------------------F----------LM-GNQVEDQQVSCLWQGDYLLT--------- 366 (423)
Q Consensus 338 ~~~i~~-------------------------------~----------~~-~~~~~~~~~~~~~~g~~l~~--------- 366 (423)
...... + .. ........+.+.++|..++.
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~ 582 (1045)
T 1k32_A 503 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA 582 (1045)
T ss_dssp SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHH
T ss_pred cccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccc
Confidence 322000 0 00 00111233455667776664
Q ss_pred ----EeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076 367 ----VSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423 (423)
Q Consensus 367 ----~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~ 423 (423)
......+..||..+... ..+. ..+.+++||||+++|++++.| .|++||+++
T Consensus 583 ~~~~~~~~~~l~~~d~~~~~~--~~l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~ 637 (1045)
T 1k32_A 583 YYQGAPEKGVLLKYDVKTRKV--TEVK---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLE 637 (1045)
T ss_dssp HHHCCCCCEEEEEEETTTCCE--EEEE---EEEEEEEECTTSCEEEEEETT-SCEEEEESS
T ss_pred cccccCCCceEEEEECCCCcE--EEee---cCcceEEECCCCCEEEEEcCC-cEEEEeCcc
Confidence 11234678888877543 3333 668999999999999998877 899999864
No 128
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.97 E-value=6.1e-28 Score=253.26 Aligned_cols=389 Identities=13% Similarity=0.038 Sum_probs=276.2
Q ss_pred ceeeEEEEeCCEEEEEecc------ceEEEEeccCCCCceeecccccCce-------eEEEEeCCCCeEEEecCC-----
Q psy13076 7 DQQVSCLWQGDYLLTVSLS------GFISYLDVNNPSTPIRVIKGHNKPI-------TALALSPDRGTVFTGSHD----- 68 (423)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~d------g~i~~~d~~~~~~~~~~~~gh~~~V-------~~l~~~~~~~~l~sg~~D----- 68 (423)
...++++|||++||.++.+ ..|++||+.. .....+.+|...+ ..++|+||++++++++.+
T Consensus 55 v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~--g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~ 132 (1045)
T 1k32_A 55 INNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN--GEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSS 132 (1045)
T ss_dssp EEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT--TEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTT
T ss_pred ccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCC--CCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcc
Confidence 3567777899999998754 4799999864 3366888999888 999999999988888755
Q ss_pred -CceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEec-------------CCeEEEEecCCCcccccccCCcceE
Q psy13076 69 -GFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTN-------------GNSVIIRNIENPAISDIYTEHSCAV 134 (423)
Q Consensus 69 -~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~~~~h~~~i 134 (423)
..|..|+++++........ ....+.++| | .++... +....+|....+.....+.+|...+
T Consensus 133 ~~~l~~~~~~~g~~~~l~~~----~~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v 206 (1045)
T 1k32_A 133 MTCLYRVENDGINFVPLNLG----PATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHV 206 (1045)
T ss_dssp CCEEEEEEGGGTEEEECCSC----SCSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCC
T ss_pred cceEEEEECCCCCeEEecCC----CcceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcc
Confidence 3577788877654332221 112344667 6 444321 2234555432222233448899999
Q ss_pred EEEEECCCCCEEEEEccCCcEEEEEcCC-CceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCccee
Q psy13076 135 NVAKYSPSGFYIASGDISGKVRIWDTVN-KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVG 213 (423)
Q Consensus 135 ~~~~~sp~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (423)
..+.|+++ .++++++.|++++||.+.. ...... +..+ ..+...+|+|||+.++..... ...++.. ....+.
T Consensus 207 ~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~--l~~~-~~~~~~~~SpDG~~la~~~~~---~i~~~d~-~~~~l~ 278 (1045)
T 1k32_A 207 SSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRK--HTSF-TDYYPRHLNTDGRRILFSKGG---SIYIFNP-DTEKIE 278 (1045)
T ss_dssp EEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEE--CCCC-CSSCEEEEEESSSCEEEEETT---EEEEECT-TTCCEE
T ss_pred cceEEeCC-EEEEEEeccCceEEEEEeCCCCcceE--ecCC-CCcceeeEcCCCCEEEEEeCC---EEEEecC-CceEee
Confidence 99999998 6777888899999998653 211111 1111 235678999999988886422 2233433 222233
Q ss_pred cccC-----------CCcceeEEEEe-cCCCeeEEEEeCCCeEEEEcCCCceeeeecccccc-CeEEEEECCCCCEEEEE
Q psy13076 214 EISG-----------QSKPINSCDFK-PSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSR-FVQAVRYSPSGSHFASA 280 (423)
Q Consensus 214 ~~~~-----------~~~~i~~~~~~-~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l~s~ 280 (423)
.+.. +...+..++|+ |++.. ++.++ ++.+.+|+....... ....+.. .+..++|+ +|+.++.+
T Consensus 279 ~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~-la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~ 354 (1045)
T 1k32_A 279 KIEIGDLESPEDRIISIPSKFAEDFSPLDGDL-IAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHG 354 (1045)
T ss_dssp ECCCCCCCBCCSEEEECGGGGEEEEEECGGGC-EEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEE
T ss_pred eeccCcccccccccccccccceeeecCCCCCE-EEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEE
Confidence 3333 23368899999 99876 45555 789999987654433 2445555 78999999 99999999
Q ss_pred EecCeEE-EEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEe
Q psy13076 281 GFDGKVF-LYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW 359 (423)
Q Consensus 281 s~dg~i~-vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~ 359 (423)
+.++.+. +|+...++.. .+. .|...+..++|+|||++|++++.++.|++||+.+++...... .+......+..++
T Consensus 355 s~~~~l~~~~d~~~~~~~-~l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~-~~~~~v~~~~~Sp 430 (1045)
T 1k32_A 355 TREGDFLGIYDYRTGKAE-KFE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-SREAMITDFTISD 430 (1045)
T ss_dssp ETTEEEEEEEETTTCCEE-ECC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCCEEECT
T ss_pred ECCCceEEEEECCCCCce-Eec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc-CCCCCccceEECC
Confidence 9888899 9998776543 333 467789999999999999999999999999999887654432 2222234566778
Q ss_pred cCcEEEEEeCCC----------cEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076 360 QGDYLLTVSLSG----------FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA 421 (423)
Q Consensus 360 ~g~~l~~~~~~~----------~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~ 421 (423)
+|++|++++.++ .+++||+.+.. ...+..|...+.+++|+||+++|++++.++..+.|+.
T Consensus 431 DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~--~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 431 NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK--IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE--EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred CCCeEEEEecCccccccCCCCCeEEEEECCCCc--EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence 999998876643 89999998753 5677889999999999999999999999888888864
No 129
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=2e-29 Score=224.03 Aligned_cols=231 Identities=11% Similarity=0.055 Sum_probs=165.9
Q ss_pred ccCceeEEEEeCC----CCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEec-CC
Q psy13076 46 HNKPITALALSPD----RGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNI-EN 120 (423)
Q Consensus 46 h~~~V~~l~~~~~----~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~ 120 (423)
|.++|++|+|+|+ ++++++++.+ +++|++.+++++..... ..+..+++|++ ++
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~--------------------g~d~~V~~~~~s~d 167 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGT--------------------LSDQQVEVMTFAED 167 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESS--------------------STTCEEEEEEECTT
T ss_pred cccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEeccc--------------------CCCCcEEEEEECCC
Confidence 5779999999999 9999998855 88898866544332100 02567888888 45
Q ss_pred CcccccccCCcceEEEEEECC---CCCEEEEEccCCcEEEEEcCCCceeEEeeecC-CCCCeeEEEECCCCCeEEEEEcC
Q psy13076 121 PAISDIYTEHSCAVNVAKYSP---SGFYIASGDISGKVRIWDTVNKEHILKNEFHP-IGGPIKDIAWSPDNQRMVVVGEG 196 (423)
Q Consensus 121 ~~~~~~~~~h~~~i~~~~~sp---~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~~~~~~~~ 196 (423)
++....+.+|...++.++|+| ++.+|++++.|++|||||+++++.+.....+. ....+.+++|+|+|+.+++.+.+
T Consensus 168 G~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~ 247 (356)
T 2w18_A 168 GGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHP 247 (356)
T ss_dssp SCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC--
T ss_pred CceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccC
Confidence 777778889999999999999 78999999999999999999888665443221 22467788999999887765421
Q ss_pred CceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeec-----cccccCeEEEEEC
Q psy13076 197 RERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK-----QEHSRFVQAVRYS 271 (423)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~-----~~~~~~i~~l~~s 271 (423)
. ....+++|+.|+++++|+....+..... .+|...+.+..+
T Consensus 248 ~---------------------------------~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~- 293 (356)
T 2w18_A 248 C---------------------------------AKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV- 293 (356)
T ss_dssp -------------------------------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE-
T ss_pred C---------------------------------CcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc-
Confidence 1 1123789999999999997766543322 344444333333
Q ss_pred CCCCEEEEEEecCeEEEEECCCccceecccccccCCCeE-EEEECCCCCeEEEEeCCCcEEEEec
Q psy13076 272 PSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVY-AVAWKPDGTQLLTASGDKTCKLWDI 335 (423)
Q Consensus 272 ~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~-~l~~~~~~~~l~s~s~d~~i~iwd~ 335 (423)
++.++++|+.|++|++||+.+++.+.++. +|...+. .++|+|||++|++|+.|++|||||+
T Consensus 294 -sg~~lASgS~DgTIkIWDl~tGk~l~tL~--gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 294 -KDHCAAAILTSGTIAIWDLLLGQCTALLP--PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp -ETTEEEEEETTSCEEEEETTTCSEEEEEC--CC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred -CCCEEEEEcCCCcEEEEECCCCcEEEEec--CCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 37789999999999999999999988874 4666544 6899999999999999999999995
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=2e-27 Score=231.03 Aligned_cols=321 Identities=15% Similarity=0.129 Sum_probs=239.4
Q ss_pred EEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcce
Q psy13076 54 ALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 133 (423)
Q Consensus 54 ~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~ 133 (423)
+|+|++.++++++.|++|.+||..+++++..+. .+|.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~-----------------------------------------~g~~-- 180 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID-----------------------------------------TGYA-- 180 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEE-----------------------------------------CSTT--
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEe-----------------------------------------cCcc--
Confidence 388999999999999999999998876654331 1233
Q ss_pred EEEEEECCCCCEEEEEccCCcEEEEEc--CCCceeEEeeecCCCCCeeEEEECC----CCCeEEEEEcCCceeeEEEeec
Q psy13076 134 VNVAKYSPSGFYIASGDISGKVRIWDT--VNKEHILKNEFHPIGGPIKDIAWSP----DNQRMVVVGEGRERFGHVFMSE 207 (423)
Q Consensus 134 i~~~~~sp~~~~l~s~~~d~~i~vwd~--~~~~~~~~~~~~~~~~~v~~v~~s~----~~~~~~~~~~~~~~~~~~~~~~ 207 (423)
++.++|+|||+++++++.|++|++||+ .+.+...... ....+..++|+| +|+++++++.... ...+|+..
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~---~g~~p~~va~sp~~~~dg~~l~v~~~~~~-~v~v~D~~ 256 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK---IGIEARSVESSKFKGYEDRYTIAGAYWPP-QFAIMDGE 256 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE---CCSEEEEEEECCSTTCTTTEEEEEEEESS-EEEEEETT
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe---cCCCcceEEeCCCcCCCCCEEEEEEccCC-eEEEEecc
Confidence 778999999999999999999999999 6655443222 245678999999 9999988764333 24677777
Q ss_pred CCcceecccCC-----------CcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeee-eccccccCeEEEEECCCCC
Q psy13076 208 TGTSVGEISGQ-----------SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM-TKQEHSRFVQAVRYSPSGS 275 (423)
Q Consensus 208 ~~~~~~~~~~~-----------~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~-~~~~~~~~i~~l~~s~~g~ 275 (423)
+.+.+..+... ...+..+.++|+++..+++...++.|.+|+....+... ....+...+..++|+|+|+
T Consensus 257 t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~ 336 (543)
T 1nir_A 257 TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHR 336 (543)
T ss_dssp TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSC
T ss_pred ccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCC
Confidence 77766665532 22578899999988888888899999999976533211 1223455677899999999
Q ss_pred EEEEEE-ecCeEEEEECCCccceecccc--cccCCCeEEEEECCC-CCeEEEEe-CCCcEEEEecCC-------cceeee
Q psy13076 276 HFASAG-FDGKVFLYDGASADLVSELGN--PAHKGGVYAVAWKPD-GTQLLTAS-GDKTCKLWDIET-------KSAVSE 343 (423)
Q Consensus 276 ~l~s~s-~dg~i~vwd~~~~~~~~~~~~--~~~~~~i~~l~~~~~-~~~l~s~s-~d~~i~iwd~~~-------~~~i~~ 343 (423)
++++++ .++.|.+||.+++++...+.. ..|.+....+ ++|+ ++.++++. .|++|++||+.+ .+++.+
T Consensus 337 ~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~ 415 (543)
T 1nir_A 337 YFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAE 415 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE
T ss_pred EEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEE
Confidence 876655 589999999999988766542 1254444334 4777 66777775 689999999988 777777
Q ss_pred eeeCceeEeeEEEEEecCcEEEEEe-------CCCcEEEEecCCCCCceEEe--------ccCCCceeEEEecCCCCeEE
Q psy13076 344 FLMGNQVEDQQVSCLWQGDYLLTVS-------LSGFISYLDVNNPSTPIRVI--------KGHNKPITALALSPDRGTVF 408 (423)
Q Consensus 344 ~~~~~~~~~~~~~~~~~g~~l~~~~-------~~~~i~~~~~~~~~~~~~~~--------~~h~~~v~~i~~sp~~~~l~ 408 (423)
+.... .....+.+.|+|.+|.+++ .++.|.+||+.+.+.....+ ..|.+.+..++|+|+|+.|.
T Consensus 416 l~~~g-~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~ 494 (543)
T 1nir_A 416 LQGQG-GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW 494 (543)
T ss_dssp EECSC-SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEE
T ss_pred EEcCC-CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEE
Confidence 65322 2234466778999999887 26799999999877654443 45678999999999999987
Q ss_pred Ee-----cCCCcEEEeeCCC
Q psy13076 409 TG-----SHDGFITRWNAKT 423 (423)
Q Consensus 409 s~-----s~D~~i~~W~~~~ 423 (423)
.+ +.|+.|.+||.+|
T Consensus 495 ~s~~~~~~~~~~i~v~D~~t 514 (543)
T 1nir_A 495 FSVWNGKNDSSALVVVDDKT 514 (543)
T ss_dssp EEEECCTTSCCEEEEEETTT
T ss_pred EEeecCCCCCCeEEEEECCC
Confidence 54 2589999999876
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=1.1e-26 Score=218.90 Aligned_cols=291 Identities=11% Similarity=0.022 Sum_probs=210.9
Q ss_pred CEEEEEe----ccc----eEEEEec--cCCCCce--eecccccCceeEEEEeC--------------CCCeEEEecCC--
Q psy13076 17 DYLLTVS----LSG----FISYLDV--NNPSTPI--RVIKGHNKPITALALSP--------------DRGTVFTGSHD-- 68 (423)
Q Consensus 17 ~~~~~~~----~dg----~i~~~d~--~~~~~~~--~~~~gh~~~V~~l~~~~--------------~~~~l~sg~~D-- 68 (423)
.++++++ .|| .|++||+ .++. .+ ..+.+|...+..+++++ .+..++.++.+
T Consensus 76 ~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~ 154 (415)
T 2hqs_A 76 DAVVVGQVTPNPDGSYNVAYQLVDTGGAPGT-VLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNG 154 (415)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEECSSSTTC-EEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSS
T ss_pred CEEEEEEEEECCCCeEEEEEEEEeCCCCCCC-EEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCC
Confidence 4666776 457 9999999 7644 44 45889999998888775 15556555543
Q ss_pred ----CceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCC
Q psy13076 69 ----GFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGF 144 (423)
Q Consensus 69 ----~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~ 144 (423)
++|++||.+.+. ...+.+|...+.+++|+|||+
T Consensus 155 ~~~~~~i~i~d~~g~~-------------------------------------------~~~l~~~~~~v~~~~~Spdg~ 191 (415)
T 2hqs_A 155 GQFPYELRVSDYDGYN-------------------------------------------QFVVHRSPQPLMSPAWSPDGS 191 (415)
T ss_dssp SSCCEEEEEEETTSCS-------------------------------------------CEEEEEESSCEEEEEECTTSS
T ss_pred CCccceEEEEcCCCCC-------------------------------------------CEEEeCCCCcceeeEEcCCCC
Confidence 688888876421 123345777899999999999
Q ss_pred EEEEEccCC---cEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC-ceeeEEEeecCCcceecccCCCc
Q psy13076 145 YIASGDISG---KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR-ERFGHVFMSETGTSVGEISGQSK 220 (423)
Q Consensus 145 ~l~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 220 (423)
++++++.++ .|++||+.+++... +..+...+.+++|+|||+.++..+... .....+|+..++. ...+..+..
T Consensus 192 ~la~~s~~~~~~~i~~~d~~tg~~~~---l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-~~~l~~~~~ 267 (415)
T 2hqs_A 192 KLAYVTFESGRSALVIQTLANGAVRQ---VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQVTDGRS 267 (415)
T ss_dssp EEEEEECTTSSCEEEEEETTTCCEEE---EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-EEECCCCSS
T ss_pred EEEEEEecCCCcEEEEEECCCCcEEE---eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-EEeCcCCCC
Confidence 999999885 99999998876532 233456789999999999988655432 3334455555544 356667778
Q ss_pred ceeEEEEecCCCeeEEEEeCCC--eEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEec---CeEEEEECCCcc
Q psy13076 221 PINSCDFKPSRPFRIITGSEDN--TIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD---GKVFLYDGASAD 295 (423)
Q Consensus 221 ~i~~~~~~~~~~~~~~s~s~d~--~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~d---g~i~vwd~~~~~ 295 (423)
.+.++.|+|++..+++++..++ .|++|+....+.. ....+...+..++|+|+|++|++++.+ ..|++||..+++
T Consensus 268 ~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 268 NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred cccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence 8999999999987454444455 6777786654432 233455678899999999999988875 589999998877
Q ss_pred ceecccccccCCCeEEEEECCCCCeEEEEeCCC---cEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCc
Q psy13076 296 LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK---TCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGF 372 (423)
Q Consensus 296 ~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~---~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 372 (423)
.. .+. .+. .+.+++|+|+|++|++++.++ .|.+||+..+.
T Consensus 347 ~~-~l~--~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~--------------------------------- 389 (415)
T 2hqs_A 347 VQ-VLS--STF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF--------------------------------- 389 (415)
T ss_dssp EE-ECC--CSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC---------------------------------
T ss_pred EE-Eec--CCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc---------------------------------
Confidence 53 343 233 789999999999999988776 67777765321
Q ss_pred EEEEecCCCCCceEEeccCCCceeEEEecCCCC
Q psy13076 373 ISYLDVNNPSTPIRVIKGHNKPITALALSPDRG 405 (423)
Q Consensus 373 i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~ 405 (423)
...+.+|.+.|++++|+|...
T Consensus 390 ------------~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 390 ------------KARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ------------EEECCCSSSEEEEEEECCCCC
T ss_pred ------------EEEeeCCCCCCcCCccccccc
Confidence 245667888999999999754
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=2.4e-25 Score=225.70 Aligned_cols=355 Identities=9% Similarity=0.065 Sum_probs=235.8
Q ss_pred cCceeEEEEeCCCCeEEEecC-CC-----ceEEeecCCcceeecccCCCCC-----------------------CceEEe
Q psy13076 47 NKPITALALSPDRGTVFTGSH-DG-----FITRWNAKTEYIFATLPRTQRG-----------------------QPIVLG 97 (423)
Q Consensus 47 ~~~V~~l~~~~~~~~l~sg~~-D~-----~i~vW~~~~~~~~~~~~~~~~~-----------------------~~~~~~ 97 (423)
...|.+++|+|||++|++++. |+ +|++||+++++....+...... ....+.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457999999999999999998 88 9999999988765444322111 123567
Q ss_pred eCCCCCeEEEecCCeEEEEecCCCc--ccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCC
Q psy13076 98 GDPKGKNFLYTNGNSVIIRNIENPA--ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIG 175 (423)
Q Consensus 98 ~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 175 (423)
++|+|+.+++.....+.+|+++++. ....+..|...+..++|+|||++|+.++ ++.|.+||+.+++...... ...
T Consensus 116 ~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~--~~~ 192 (741)
T 2ecf_A 116 WSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTA--DGS 192 (741)
T ss_dssp ECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCC--CCC
T ss_pred ECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEecc--CCc
Confidence 8999999998888999999998873 3445677888899999999999999987 5699999998765432111 111
Q ss_pred C----------------CeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEe
Q psy13076 176 G----------------PIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239 (423)
Q Consensus 176 ~----------------~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s 239 (423)
. .+..++|||||+.+++++.+...... +. ..........+..+.|...+. ..
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~-~~------~~~~~p~~~~~~~~~~~~~g~-----~~ 260 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPV-QK------RYEVYADRTDVIEQRYPAAGD-----AN 260 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCE-EE------EEEECSSCEEEEEEECCBTTS-----CC
T ss_pred cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCce-Ee------cCCCCCCcccceEeecCCCCC-----CC
Confidence 1 14779999999999887643321111 10 000111111223333332221 01
Q ss_pred CCCeEEEEcCCC-ceeeeecc--ccccCeEEEEECCCCCEEEEEEe-----cCeEEEEECCCccceecccccccCC---C
Q psy13076 240 EDNTIAVFEGPP-FKFKMTKQ--EHSRFVQAVRYSPSGSHFASAGF-----DGKVFLYDGASADLVSELGNPAHKG---G 308 (423)
Q Consensus 240 ~d~~i~~~~~~~-~~~~~~~~--~~~~~i~~l~~s~~g~~l~s~s~-----dg~i~vwd~~~~~~~~~~~~~~~~~---~ 308 (423)
....|++|+... .+...... .+...+..++| |||++|++++. +..|++||..+++....+.. .... .
T Consensus 261 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~~~ 338 (741)
T 2ecf_A 261 VQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE-TSPTWVPL 338 (741)
T ss_dssp CEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE-ECSSCCCC
T ss_pred CeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc-CCCCcCCc
Confidence 112577778655 44332221 46677899999 99999988765 56899999998876544432 1112 3
Q ss_pred eEEEEECCCCCeEEEEeCCCcEEEEecC-CcceeeeeeeCceeEeeEE-EEEecCcEEEEE-eCCC--cEEEEecCCCCC
Q psy13076 309 VYAVAWKPDGTQLLTASGDKTCKLWDIE-TKSAVSEFLMGNQVEDQQV-SCLWQGDYLLTV-SLSG--FISYLDVNNPST 383 (423)
Q Consensus 309 i~~l~~~~~~~~l~s~s~d~~i~iwd~~-~~~~i~~~~~~~~~~~~~~-~~~~~g~~l~~~-~~~~--~i~~~~~~~~~~ 383 (423)
+..++|+|||+++++++.|+.++||.+. .++ ...+..+ ......+ ..+++|+.++.. +.++ .+++|++.....
T Consensus 339 ~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~-~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 339 HNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG-NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG 416 (741)
T ss_dssp CSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS-SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred CCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec-ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence 4578999999999999999988888775 333 4443322 2222233 467789887654 4454 788998865344
Q ss_pred ceEEeccCCCceeEEEecCCCCeEEEecCC----CcEEEeeC
Q psy13076 384 PIRVIKGHNKPITALALSPDRGTVFTGSHD----GFITRWNA 421 (423)
Q Consensus 384 ~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D----~~i~~W~~ 421 (423)
....+.+ ...+.+++||||+++|+....+ ..+.+|+.
T Consensus 417 ~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~ 457 (741)
T 2ecf_A 417 QPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRA 457 (741)
T ss_dssp CCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred Ceeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence 3455555 6778999999999998765433 45777764
No 133
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.95 E-value=3.2e-26 Score=231.51 Aligned_cols=348 Identities=12% Similarity=0.090 Sum_probs=224.2
Q ss_pred eeeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccC---ceeEEEEeCCCCeEEEecCC---------CceEEee
Q psy13076 8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNK---PITALALSPDRGTVFTGSHD---------GFITRWN 75 (423)
Q Consensus 8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~---~V~~l~~~~~~~~l~sg~~D---------~~i~vW~ 75 (423)
..+++++||+++++ +.||.|++||+.++ +....+.+|.. .|.+++|||||++|++++.| +.+++||
T Consensus 20 ~~~~~spdg~~~~~-~~dg~i~~~d~~~g-~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d 97 (723)
T 1xfd_A 20 PEAKWISDTEFIYR-EQKGTVRLWNVETN-TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (723)
T ss_dssp CCCCBSSSSCBCCC-CSSSCEEEBCGGGC-CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred cccEEcCCCcEEEE-eCCCCEEEEECCCC-cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence 44566679998876 89999999999864 45567777765 49999999999999998875 5666888
Q ss_pred cCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcE
Q psy13076 76 AKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKV 155 (423)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i 155 (423)
+++++.. .+ ....+|...+..++|||||++||+++. +.|
T Consensus 98 ~~~~~~~-~l---------------------------------------~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i 136 (723)
T 1xfd_A 98 IPHGDPQ-SL---------------------------------------DPPEVSNAKLQYAGWGPKGQQLIFIFE-NNI 136 (723)
T ss_dssp SSSCCCE-EC---------------------------------------CCTTCCSCCCSBCCBCSSTTCEEEEET-TEE
T ss_pred CCCCceE-ec---------------------------------------cCCccccccccccEECCCCCEEEEEEC-CeE
Confidence 7765431 11 011234455777899999999999875 799
Q ss_pred EEEEcCCCceeEEeeecCC----------------CCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCC
Q psy13076 156 RIWDTVNKEHILKNEFHPI----------------GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQS 219 (423)
Q Consensus 156 ~vwd~~~~~~~~~~~~~~~----------------~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (423)
++||..+++.......... ...+.+++|||||+.+++++...... .++...... ....
T Consensus 137 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~-~~~~~~~~~-----~~~~ 210 (723)
T 1xfd_A 137 YYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRV-PIMELPTYT-----GSIY 210 (723)
T ss_dssp EEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTS-CEEEECCCS-----SSSS
T ss_pred EEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCcc-ceEEeeccC-----CcCC
Confidence 9999987654322211110 01237899999999998876443211 112111100 0112
Q ss_pred cceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccc------cccCeEEEEECCCCCEEEEEEe----cCeEEEE
Q psy13076 220 KPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE------HSRFVQAVRYSPSGSHFASAGF----DGKVFLY 289 (423)
Q Consensus 220 ~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~------~~~~i~~l~~s~~g~~l~s~s~----dg~i~vw 289 (423)
..+..+.|.+.+.. ..+..+++|+....+....+.. +...+..++|+|||+++++.+. +..|++|
T Consensus 211 ~~~~~~~~~~~G~~-----~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~ 285 (723)
T 1xfd_A 211 PTVKPYHYPKAGSE-----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLC 285 (723)
T ss_dssp CCCEEEECCBTTSC-----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEE
T ss_pred CcceeccCCCCCCC-----CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEE
Confidence 23566777766532 3345799999765543233332 2567889999999998877654 3579999
Q ss_pred ECCCccceecccccccCCCe----EEEEECCCCCeEEE--EeCCC------cEEEEe-cCCcc--eeeeeeeCceeEeeE
Q psy13076 290 DGASADLVSELGNPAHKGGV----YAVAWKPDGTQLLT--ASGDK------TCKLWD-IETKS--AVSEFLMGNQVEDQQ 354 (423)
Q Consensus 290 d~~~~~~~~~~~~~~~~~~i----~~l~~~~~~~~l~s--~s~d~------~i~iwd-~~~~~--~i~~~~~~~~~~~~~ 354 (423)
|..+++....+.. .+.+.+ ..++|+|||+.|+. +..++ .|.+|| ...++ +...+..+.......
T Consensus 286 d~~~g~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~ 364 (723)
T 1xfd_A 286 DATTGVCTKKHED-ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKI 364 (723)
T ss_dssp ETTTCCEEEEEEE-ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEE
T ss_pred eCCCCcceEEEEe-ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEee
Confidence 9988876543321 233433 37899999997775 45666 466677 33333 033332221111122
Q ss_pred EEEEecCcEEEEEeCC---CcEEEEecCCCCC-ceEEecc---CCCceeEEEecCCCCeEEEe
Q psy13076 355 VSCLWQGDYLLTVSLS---GFISYLDVNNPST-PIRVIKG---HNKPITALALSPDRGTVFTG 410 (423)
Q Consensus 355 ~~~~~~g~~l~~~~~~---~~i~~~~~~~~~~-~~~~~~~---h~~~v~~i~~sp~~~~l~s~ 410 (423)
...+++|+.|+..+.+ +.+.+|++..... ....+.. |...+..++|+||+++|+..
T Consensus 365 ~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 365 LAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp EEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred eEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence 4567799999866554 7788888764332 2233443 67789999999999988754
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=3.2e-25 Score=224.82 Aligned_cols=320 Identities=11% Similarity=0.081 Sum_probs=227.1
Q ss_pred eeEEEEeCCEEEEEec-cc-----eEEEEeccCCCCceeecccccC------------------------ceeEEEEeCC
Q psy13076 9 QVSCLWQGDYLLTVSL-SG-----FISYLDVNNPSTPIRVIKGHNK------------------------PITALALSPD 58 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~-dg-----~i~~~d~~~~~~~~~~~~gh~~------------------------~V~~l~~~~~ 58 (423)
.+++++||++|++++. || .|++||+.++ +....+..|.. .|.+++|+||
T Consensus 41 ~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpD 119 (741)
T 2ecf_A 41 KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG-QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPD 119 (741)
T ss_dssp EEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC-CEEEEECGGGTC--------------------CCEESCCCEECTT
T ss_pred CceEecCCCEEEEEeccCCCCcccEEEEEECCCC-ceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCC
Confidence 4667779999999998 88 9999999763 44545554433 3899999999
Q ss_pred CCeEEEecCCCceEEeecCCc---ceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcce--
Q psy13076 59 RGTVFTGSHDGFITRWNAKTE---YIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA-- 133 (423)
Q Consensus 59 ~~~l~sg~~D~~i~vW~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~-- 133 (423)
+++|++++. +.|++||+.++ .+.. +.. .......+.++|+|+.+++..+..+.+|++++++.......+...
T Consensus 120 g~~l~~~~~-~~i~~~d~~~~~~~~~~~-l~~-~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~ 196 (741)
T 2ecf_A 120 AQRLLFPLG-GELYLYDLKQEGKAAVRQ-LTH-GEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIG 196 (741)
T ss_dssp SSEEEEEET-TEEEEEESSSCSTTSCCB-CCC-SSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEE
T ss_pred CCEEEEEeC-CcEEEEECCCCCcceEEE-ccc-CCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCcccee
Confidence 999999886 99999999987 4432 221 223455678999999999888889999999988776665555432
Q ss_pred --------------EEEEEECCCCCEEEEEccCC---------------------------------cEEEEEcCC-Cce
Q psy13076 134 --------------VNVAKYSPSGFYIASGDISG---------------------------------KVRIWDTVN-KEH 165 (423)
Q Consensus 134 --------------i~~~~~sp~~~~l~s~~~d~---------------------------------~i~vwd~~~-~~~ 165 (423)
+..+.|+|||++|++++.|+ .|.+||+.+ ++.
T Consensus 197 ~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 276 (741)
T 2ecf_A 197 NGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT 276 (741)
T ss_dssp ESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC
T ss_pred ccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce
Confidence 46789999999999988775 788999877 654
Q ss_pred eEEeeecCCCCCeeEEEECCCCCeEEEEEcC---CceeeEEEeecCCcceecccCCCc----ceeEEEEecCCCeeEEEE
Q psy13076 166 ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG---RERFGHVFMSETGTSVGEISGQSK----PINSCDFKPSRPFRIITG 238 (423)
Q Consensus 166 ~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~s~ 238 (423)
........+...+..++| |||+.+++.... ......+++..++.....+..+.. .+..+.|+|++. .++++
T Consensus 277 ~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~ 354 (741)
T 2ecf_A 277 QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSS 354 (741)
T ss_dssp EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEE
T ss_pred EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe-EEEEe
Confidence 322111123456889999 999999887642 233344555555554443333222 456889999998 57888
Q ss_pred eCCCeEEEEcCC-CceeeeeccccccCeEEE-EECCCCCEEEE-EEecC--eEEEEECCC-ccceecccccccCCCeEEE
Q psy13076 239 SEDNTIAVFEGP-PFKFKMTKQEHSRFVQAV-RYSPSGSHFAS-AGFDG--KVFLYDGAS-ADLVSELGNPAHKGGVYAV 312 (423)
Q Consensus 239 s~d~~i~~~~~~-~~~~~~~~~~~~~~i~~l-~~s~~g~~l~s-~s~dg--~i~vwd~~~-~~~~~~~~~~~~~~~i~~l 312 (423)
+.++...+|... ... ...+..+...+..+ .|+|+|+.++. ++.++ .+++|+... +.....+. ....+..+
T Consensus 355 ~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~---~~~~~~~~ 430 (741)
T 2ecf_A 355 ERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS---KAPGMHSA 430 (741)
T ss_dssp CTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC---CSCSEEEE
T ss_pred cCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc---cCCCceEE
Confidence 888876666432 122 44555566667776 59999997755 44455 889998764 44444553 24567899
Q ss_pred EECCCCCeEEEEeCC----CcEEEEecCCc
Q psy13076 313 AWKPDGTQLLTASGD----KTCKLWDIETK 338 (423)
Q Consensus 313 ~~~~~~~~l~s~s~d----~~i~iwd~~~~ 338 (423)
+|+|+|++|+....+ ..+.+|+...+
T Consensus 431 ~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 431 SFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp EECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred EECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 999999988876544 46888887544
No 135
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=2.3e-23 Score=196.29 Aligned_cols=250 Identities=15% Similarity=0.156 Sum_probs=186.4
Q ss_pred CCEEEEEecc------ceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCC---ceEEeecCCcceeeccc
Q psy13076 16 GDYLLTVSLS------GFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDG---FITRWNAKTEYIFATLP 86 (423)
Q Consensus 16 ~~~~~~~~~d------g~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~---~i~vW~~~~~~~~~~~~ 86 (423)
+..++.++.+ +.|++||++. .....+.+|.+.|.+++|+|++++|++++.|+ .|++||+++++...
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g--~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~--- 217 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG--YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--- 217 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS--CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE---
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC--CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE---
Confidence 6677777775 8999999863 44678889999999999999999999999885 99999998764321
Q ss_pred CCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEE-EEccCCc--EEEEEcCCC
Q psy13076 87 RTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGK--VRIWDTVNK 163 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-s~~~d~~--i~vwd~~~~ 163 (423)
+..|...+.+++|+|||++|+ +++.++. |.+||+.++
T Consensus 218 ----------------------------------------l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~ 257 (415)
T 2hqs_A 218 ----------------------------------------VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG 257 (415)
T ss_dssp ----------------------------------------EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred ----------------------------------------eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC
Confidence 223556788999999999888 6666654 999999876
Q ss_pred ceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCc-eeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeC--
Q psy13076 164 EHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE-RFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSE-- 240 (423)
Q Consensus 164 ~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~-- 240 (423)
+.. .+..+...+.+++|+|||+.+++.+.... ....+++...+. ...+..+...+..++|+|++.+++.++..
T Consensus 258 ~~~---~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g 333 (415)
T 2hqs_A 258 QIR---QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGG 333 (415)
T ss_dssp CEE---ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-CEECCCSSSEEEEEEECTTSSEEEEEEECSS
T ss_pred CEE---eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC-EEEEecCCCcccCeEECCCCCEEEEEECcCC
Confidence 542 23344567899999999999988875332 223334444443 34455566788899999999875555444
Q ss_pred CCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecC---eEEEEECCCccceecccccccCCCeEEEEECCC
Q psy13076 241 DNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDG---KVFLYDGASADLVSELGNPAHKGGVYAVAWKPD 317 (423)
Q Consensus 241 d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~ 317 (423)
+..|++|+....+.. .+..+. .+.+++|+|+|++|++++.++ .|++||... +....+ ..|.+.|.+++|+|.
T Consensus 334 ~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g-~~~~~l--~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 334 QQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG-RFKARL--PATDGQVKFPAWSPY 408 (415)
T ss_dssp CEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS-CCEEEC--CCSSSEEEEEEECCC
T ss_pred ceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC-CcEEEe--eCCCCCCcCCccccc
Confidence 358999998765543 333443 789999999999999999887 799999864 444555 358889999999996
Q ss_pred CC
Q psy13076 318 GT 319 (423)
Q Consensus 318 ~~ 319 (423)
..
T Consensus 409 ~~ 410 (415)
T 2hqs_A 409 LH 410 (415)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=8.6e-24 Score=213.18 Aligned_cols=317 Identities=15% Similarity=0.196 Sum_probs=215.8
Q ss_pred EEEeCCEEEEEeccceEEEEeccCCCCceeeccccc-----------------CceeEEEEeCCCCeEEEecCCCceEEe
Q psy13076 12 CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHN-----------------KPITALALSPDRGTVFTGSHDGFITRW 74 (423)
Q Consensus 12 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~-----------------~~V~~l~~~~~~~~l~sg~~D~~i~vW 74 (423)
+.|-|+.++.++.|| | +||+.++......+..|. .+|.+++|+|+ +.++.+ .|++|++|
T Consensus 31 ~~w~g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i~~~ 106 (706)
T 2z3z_A 31 LQWMGDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGLVGF 106 (706)
T ss_dssp CEEETTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEEEEE
T ss_pred CcCcCCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEEEEE
Confidence 345477788888888 8 999986543103444443 57999999999 555444 45999999
Q ss_pred ecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCC-----CcccccccCCcce--------------EE
Q psy13076 75 NAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN-----PAISDIYTEHSCA--------------VN 135 (423)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~h~~~--------------i~ 135 (423)
|+.+++....... ......+.++|+|+.+++..+..+.+|++++ ++.......+... +.
T Consensus 107 d~~~~~~~~l~~~--~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~ 184 (706)
T 2z3z_A 107 DMLARKVTYLFDT--NEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEK 184 (706)
T ss_dssp ETTTTEEEEEECC--TTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCC
T ss_pred ECCCCceEEccCC--cccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCc
Confidence 9998876543322 2223345789999999998889999999998 7766655544443 47
Q ss_pred EEEECCCCCEEEEEc---------------------------------cCCcEEEEEcCCCceeEEeeecCCCCCeeEEE
Q psy13076 136 VAKYSPSGFYIASGD---------------------------------ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIA 182 (423)
Q Consensus 136 ~~~~sp~~~~l~s~~---------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~ 182 (423)
.+.|+|||++|++++ .+..|.+||+.+++.............+..++
T Consensus 185 ~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 264 (706)
T 2z3z_A 185 GTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLS 264 (706)
T ss_dssp SEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEE
T ss_pred eEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEE
Confidence 899999999999987 34679999998766432221122345688999
Q ss_pred ECCCCCeEEEEEcCCc---eeeEEEeecCCcceeccc--CCC---cceeEEEEec--CCCeeEEEEeCCCeEEEEcCC-C
Q psy13076 183 WSPDNQRMVVVGEGRE---RFGHVFMSETGTSVGEIS--GQS---KPINSCDFKP--SRPFRIITGSEDNTIAVFEGP-P 251 (423)
Q Consensus 183 ~s~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~---~~i~~~~~~~--~~~~~~~s~s~d~~i~~~~~~-~ 251 (423)
|+|||+.+++...... ....+++..++.....+. .+. ..+..+.|+| ++.+ +++++.++.+.+|... .
T Consensus 265 ~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~-l~~~~~~g~~~l~~~~~~ 343 (706)
T 2z3z_A 265 WSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQF-IWQSRRDGWNHLYLYDTT 343 (706)
T ss_dssp ECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEE-EEEECTTSSCEEEEEETT
T ss_pred EECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEE-EEEEccCCccEEEEEECC
Confidence 9999999888764431 234556655553333222 111 1246789999 8874 7788888888888643 2
Q ss_pred ceeeeeccccccCeEE-EEECCCCCEEEEEEe-cC----eEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEe
Q psy13076 252 FKFKMTKQEHSRFVQA-VRYSPSGSHFASAGF-DG----KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS 325 (423)
Q Consensus 252 ~~~~~~~~~~~~~i~~-l~~s~~g~~l~s~s~-dg----~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s 325 (423)
......+..+...+.. ++|+|+|+.|+.++. ++ .|+.||..+++ ...+. +...+.+++|+|+|++|+..+
T Consensus 344 ~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~---~~~~~~~~~~spdg~~l~~~~ 419 (706)
T 2z3z_A 344 GRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT---PESGMHRTQLSPDGSAIIDIF 419 (706)
T ss_dssp SCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC---CSSSEEEEEECTTSSEEEEEE
T ss_pred CCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc---CCCceEEEEECCCCCEEEEEe
Confidence 3333444555666765 799999998766554 44 67778877665 33332 566789999999999888765
Q ss_pred CC----CcEEEEecCCcc
Q psy13076 326 GD----KTCKLWDIETKS 339 (423)
Q Consensus 326 ~d----~~i~iwd~~~~~ 339 (423)
.+ +.+.+||+.+++
T Consensus 420 ~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 420 QSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ECSSCSCEEEEEESSSCE
T ss_pred cCCCCCcEEEEEECCCCe
Confidence 44 469999998876
No 137
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=3.8e-24 Score=191.49 Aligned_cols=258 Identities=17% Similarity=0.164 Sum_probs=184.0
Q ss_pred EEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCC-cceeecccCCCCCCceEEeeC
Q psy13076 21 TVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT-EYIFATLPRTQRGQPIVLGGD 99 (423)
Q Consensus 21 ~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~-~~~~~~~~~~~~~~~~~~~~~ 99 (423)
.++.|+.|++||+.+. ....+.+|.+.|.+++|+|++++|++++ ++.|++||+++ ++....
T Consensus 17 ~~~~~~~i~~~d~~~~--~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~--------------- 78 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR--KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV--------------- 78 (297)
T ss_dssp -CCCCEEEEEEETTTT--EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC---------------
T ss_pred CCCcceeEEEEeCCCC--ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe---------------
Confidence 3568899999998752 3446777999999999999999999986 78999999987 543221
Q ss_pred CCCCeEEEecCCeEEEEecCCCcccccccCC-cceEEEEEECCCCCEEEEEc--cCCcEEEEEc--CCCceeEEeeecCC
Q psy13076 100 PKGKNFLYTNGNSVIIRNIENPAISDIYTEH-SCAVNVAKYSPSGFYIASGD--ISGKVRIWDT--VNKEHILKNEFHPI 174 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h-~~~i~~~~~sp~~~~l~s~~--~d~~i~vwd~--~~~~~~~~~~~~~~ 174 (423)
+.+| ...+..++|+|+++++++++ .++..+||.+ .+++.. .+. .
T Consensus 79 ---------------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~---~~~-~ 127 (297)
T 2ojh_A 79 ---------------------------DTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPR---LMT-K 127 (297)
T ss_dssp ---------------------------CCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCE---ECC-S
T ss_pred ---------------------------ccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceE---Eee-c
Confidence 1122 24567789999999999988 4456666655 333321 111 2
Q ss_pred CCCeeEEEECCCCCeEEEEEcCCceeeEEEeecC-CcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC-Cc
Q psy13076 175 GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSET-GTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP-PF 252 (423)
Q Consensus 175 ~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~-~~ 252 (423)
...+..++|+|+++.++..+..... ..+|..+. +.....+..+...+.++.|+|++..+++++..++.+.+|... ..
T Consensus 128 ~~~~~~~~~spdg~~l~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~ 206 (297)
T 2ojh_A 128 NLPSYWHGWSPDGKSFTYCGIRDQV-FDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG 206 (297)
T ss_dssp SSSEEEEEECTTSSEEEEEEEETTE-EEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred CCCccceEECCCCCEEEEEECCCCc-eEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC
Confidence 2358889999999998865543332 35555432 334455666677899999999998766666678888888753 22
Q ss_pred eeeeeccccccCeEEEEECCCCCEEEEEEec-----------CeEEEEECCCccceecccccccCCCeEEEEECCCCCeE
Q psy13076 253 KFKMTKQEHSRFVQAVRYSPSGSHFASAGFD-----------GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQL 321 (423)
Q Consensus 253 ~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~d-----------g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l 321 (423)
.....+..+...+..++|+|+|++|++++.+ +.|++||..+++.........|...+..++|+|++++|
T Consensus 207 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 286 (297)
T 2ojh_A 207 SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEF 286 (297)
T ss_dssp SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEE
T ss_pred CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEE
Confidence 2233455566778899999999999988876 56999999887653333223567788899999999999
Q ss_pred EEEeCCC
Q psy13076 322 LTASGDK 328 (423)
Q Consensus 322 ~s~s~d~ 328 (423)
++++.+.
T Consensus 287 ~~~~~~~ 293 (297)
T 2ojh_A 287 AYVRYFP 293 (297)
T ss_dssp EEEEECC
T ss_pred EEEEecc
Confidence 9887764
No 138
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=4.4e-23 Score=188.34 Aligned_cols=276 Identities=14% Similarity=0.140 Sum_probs=189.8
Q ss_pred CCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEec-CCCceEEeecCCcce-eecccCCCCCCc
Q psy13076 16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS-HDGFITRWNAKTEYI-FATLPRTQRGQP 93 (423)
Q Consensus 16 ~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~-~D~~i~vW~~~~~~~-~~~~~~~~~~~~ 93 (423)
+..+++++.++.|++||+.+ .+....+..+..++ .++|+|++++|++++ .++.|++||.+++++ ...
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~--------- 78 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDT-LEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA--------- 78 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTT-CCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE---------
T ss_pred CEEEEEecCCCeEEEEeCcc-cceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe---------
Confidence 45577888999999999976 45555666666677 999999999665554 489999999987653 211
Q ss_pred eEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCC---cEEEEEcCCCceeEEee
Q psy13076 94 IVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISG---KVRIWDTVNKEHILKNE 170 (423)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~ 170 (423)
+..+.....+++|+|+|++++++..++ .|++||..+.+......
T Consensus 79 ---------------------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~ 125 (331)
T 3u4y_A 79 ---------------------------------IQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP 125 (331)
T ss_dssp ---------------------------------EEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE
T ss_pred ---------------------------------cccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE
Confidence 112223333478999999999655553 89999998776544322
Q ss_pred ecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcce----ecccCCCcceeEEEEecCCCeeEEEEeCCCeEEE
Q psy13076 171 FHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSV----GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAV 246 (423)
Q Consensus 171 ~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~ 246 (423)
.......++|+|+|++++++.........+|..+....+ .........+..++|+|++.++++++..++.+.+
T Consensus 126 ---~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v 202 (331)
T 3u4y_A 126 ---IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGI 202 (331)
T ss_dssp ---CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred ---CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEE
Confidence 234568999999999887776554432345554432222 1112333457899999999887777778999999
Q ss_pred EcCCCcee---eeeccccccCeEEEEECCCCCEEEEEE-ecCeEEEEECCCccc--eeccccc-----ccCCCeEEEEEC
Q psy13076 247 FEGPPFKF---KMTKQEHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASADL--VSELGNP-----AHKGGVYAVAWK 315 (423)
Q Consensus 247 ~~~~~~~~---~~~~~~~~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~--~~~~~~~-----~~~~~i~~l~~~ 315 (423)
|+....+. ..... ....+..++|+|+|++++.++ .++.|.+||..+++. +..+... ........++|+
T Consensus 203 ~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 281 (331)
T 3u4y_A 203 LETQNPENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALN 281 (331)
T ss_dssp EECSSTTSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEEC
T ss_pred EECCCCcccceeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEEC
Confidence 99765554 33333 235567899999999776655 578899999988776 2222110 111223568999
Q ss_pred CCCCeEEEEe-CCCcEEEEecCCcc
Q psy13076 316 PDGTQLLTAS-GDKTCKLWDIETKS 339 (423)
Q Consensus 316 ~~~~~l~s~s-~d~~i~iwd~~~~~ 339 (423)
|+|++|++++ .++.|++||+....
T Consensus 282 pdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 282 KTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp TTSSEEEEEETTTTEEEEEETTSCE
T ss_pred CCCCEEEEecCCCCcEEEEEecCCc
Confidence 9999886655 46699999998654
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=1e-23 Score=188.75 Aligned_cols=238 Identities=13% Similarity=0.112 Sum_probs=169.7
Q ss_pred CCcceEEEEEECCCCCEEEEEccCCcEEEEEcCC-CceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec
Q psy13076 129 EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN-KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE 207 (423)
Q Consensus 129 ~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~ 207 (423)
.|...|.+++|+|+|+++++++ ++.|++||+.+ ++...... ......+.+++|+|+++.++++....+....+|..+
T Consensus 39 ~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~ 116 (297)
T 2ojh_A 39 QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDT-GFATICNNDHGISPDGALYAISDKVEFGKSAIYLLP 116 (297)
T ss_dssp EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCC-TTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEE
T ss_pred cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecc-ccccccccceEECCCCCEEEEEEeCCCCcceEEEEE
Confidence 3566789999999999999986 78999999987 65432211 112356788999999999998874433334455543
Q ss_pred C-CcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcC--CCceeeeeccccccCeEEEEECCCCCEEEEEE-ec
Q psy13076 208 T-GTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEG--PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG-FD 283 (423)
Q Consensus 208 ~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~--~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s-~d 283 (423)
. +.....+..+ ..+..+.|+|++..++++++.++.+.+|+. .... ......+...+.+++|+|+|++++.++ .+
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 194 (297)
T 2ojh_A 117 STGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRT 194 (297)
T ss_dssp TTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCSSSCEEEEEECTTSSEEEEEECTT
T ss_pred CCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccCCCccccceECCCCCEEEEEecCC
Confidence 2 2223333333 348889999999986778889998888874 2222 234455667889999999999887766 58
Q ss_pred CeEEEEECC-CccceecccccccCCCeEEEEECCCCCeEEEEeCC-----------CcEEEEecCCcceeeeeeeCceeE
Q psy13076 284 GKVFLYDGA-SADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD-----------KTCKLWDIETKSAVSEFLMGNQVE 351 (423)
Q Consensus 284 g~i~vwd~~-~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d-----------~~i~iwd~~~~~~i~~~~~~~~~~ 351 (423)
+.+.+|+.. .+.....+. .|...+..++|+|+|++|++++.+ +.|.+||+.+++..
T Consensus 195 ~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~---------- 262 (297)
T 2ojh_A 195 GQMQIWRVRVDGSSVERIT--DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE---------- 262 (297)
T ss_dssp SSCEEEEEETTSSCEEECC--CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE----------
T ss_pred CCccEEEECCCCCCcEEEe--cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCce----------
Confidence 999999875 444444443 356678899999999999988776 34777776654321
Q ss_pred eeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCC
Q psy13076 352 DQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDG 414 (423)
Q Consensus 352 ~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~ 414 (423)
.+..+.+|...+.+++|+|++++|++++.|.
T Consensus 263 --------------------------------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 263 --------------------------------TLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp --------------------------------EEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred --------------------------------eeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 1223346788899999999999998887653
No 140
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=5.5e-23 Score=187.82 Aligned_cols=297 Identities=11% Similarity=0.096 Sum_probs=203.4
Q ss_pred CEEEEEeccceEEEEeccCCCCceeecc-cccC-ceeEEEEeCCCCeE-EEecCCCceEEeecCCcceeecccCCCCC--
Q psy13076 17 DYLLTVSLSGFISYLDVNNPSTPIRVIK-GHNK-PITALALSPDRGTV-FTGSHDGFITRWNAKTEYIFATLPRTQRG-- 91 (423)
Q Consensus 17 ~~~~~~~~dg~i~~~d~~~~~~~~~~~~-gh~~-~V~~l~~~~~~~~l-~sg~~D~~i~vW~~~~~~~~~~~~~~~~~-- 91 (423)
+++++++.++.|++||+.+ .+.+..+. ++.. .+..++|+|+++.+ ++++.++.|.+||..+++....+.....+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEK-MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTT-TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEECCC-CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccc
Confidence 5899999999999999976 34455554 3322 48899999999764 66777899999999998876655432211
Q ss_pred --CceEEeeCCCCCeEEEe-------------cCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEE
Q psy13076 92 --QPIVLGGDPKGKNFLYT-------------NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVR 156 (423)
Q Consensus 92 --~~~~~~~~~~~~~~~~~-------------~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~ 156 (423)
.+..+.++|+|+.+++. ....+.+|++++++....+.. ...+..++|+|++++++++ ++.|.
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~ 157 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLH 157 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEE
T ss_pred cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEE
Confidence 34456788999877766 357899999998877666554 3456778999999988888 68899
Q ss_pred EEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEE
Q psy13076 157 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRII 236 (423)
Q Consensus 157 vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 236 (423)
+||..+.+............ .+.|+|+++.+++.+.........+.... ...+....
T Consensus 158 ~~d~~~~~~~~~~~~~~~~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~- 214 (337)
T 1pby_B 158 VMDPEAGTLVEDKPIQSWEA---ETYAQPDVLAVWNQHESSGVMATPFYTAR-------------------KDIDPADP- 214 (337)
T ss_dssp EEETTTTEEEEEECSTTTTT---TTBCCCBCCCCCCCCTTTTEEEEEEEEEB-------------------TTSCTTSG-
T ss_pred EEECCCCcEeeeeeccccCC---CceeCCCccEEeeeccCCCceeeeeeccc-------------------cccccccc-
Confidence 99998876543332221112 23789998876654433222111111100 00000000
Q ss_pred EEeCCCeEEEEcCCCceee-eeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEEC
Q psy13076 237 TGSEDNTIAVFEGPPFKFK-MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWK 315 (423)
Q Consensus 237 s~s~d~~i~~~~~~~~~~~-~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~ 315 (423)
......+.+|+....+.. .....+...+..++|+|+|++++++ ++.|.+||..+++....+.. ...+.+++|+
T Consensus 215 -~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s 288 (337)
T 1pby_B 215 -TAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL---PHSYYSVNVS 288 (337)
T ss_dssp -GGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC---SSCCCEEEEC
T ss_pred -cccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC---CCceeeEEEC
Confidence 001115777776654432 2233445567889999999999888 79999999998887666542 2457899999
Q ss_pred CCCCeEEEEeCCCcEEEEecCCcceeeeeee
Q psy13076 316 PDGTQLLTASGDKTCKLWDIETKSAVSEFLM 346 (423)
Q Consensus 316 ~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~ 346 (423)
|+|++|++++.++.|++||+.+++.+..+..
T Consensus 289 ~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 289 TDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp TTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 9999999999999999999999987776643
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=9.7e-23 Score=186.64 Aligned_cols=269 Identities=12% Similarity=0.199 Sum_probs=174.8
Q ss_pred EEEEEeccceEEEEeccCCCC-ceeecccccCceeEEEEeCCCCeEEEecCC-CceEEeecC--Ccce--eecccCCCCC
Q psy13076 18 YLLTVSLSGFISYLDVNNPST-PIRVIKGHNKPITALALSPDRGTVFTGSHD-GFITRWNAK--TEYI--FATLPRTQRG 91 (423)
Q Consensus 18 ~~~~~~~dg~i~~~d~~~~~~-~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D-~~i~vW~~~--~~~~--~~~~~~~~~~ 91 (423)
++++++.|+.|++||++...+ .......|...+.+++|+|++++|++++.+ +.|++|+++ ++.. +..+.. .+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~ 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL--PG 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC--SS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc--CC
Confidence 344447899999999964222 122223577889999999999988888776 999999987 4442 233322 22
Q ss_pred CceEEeeCCCCCeEEEec--CCeEEEEecC---CCcccccccCCcceEEEEEECCCCCEEEEEc-cCCcEEEEEcCC-Cc
Q psy13076 92 QPIVLGGDPKGKNFLYTN--GNSVIIRNIE---NPAISDIYTEHSCAVNVAKYSPSGFYIASGD-ISGKVRIWDTVN-KE 164 (423)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~--~~~~~i~~~~---~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~-~d~~i~vwd~~~-~~ 164 (423)
.+..+.++|+|+.+++.. +..+.+|+++ .......+..+. .+..++|+|+++++++++ .++.|++||+.+ ++
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 163 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQDRICLFTVSDDGH 163 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCC-CceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence 556778899998776543 5679999984 333444444443 478899999999888877 899999999976 43
Q ss_pred eeEEe--eec-CCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCC
Q psy13076 165 HILKN--EFH-PIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSED 241 (423)
Q Consensus 165 ~~~~~--~~~-~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d 241 (423)
..... ... .....+..++|+|+++++++++ ..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~--------------------------------------------~~~ 199 (343)
T 1ri6_A 164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVN--------------------------------------------ELN 199 (343)
T ss_dssp EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEE--------------------------------------------TTT
T ss_pred eeeecccccccCCCCCcceEEECCCCCEEEEEe--------------------------------------------CCC
Confidence 22111 111 1223456677777766554443 234
Q ss_pred CeEEEEcCCC--cee--eee---cc---ccccCeEEEEECCCCCEEEEEE-ecCeEEEEECCC--c--cceecccccccC
Q psy13076 242 NTIAVFEGPP--FKF--KMT---KQ---EHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGAS--A--DLVSELGNPAHK 306 (423)
Q Consensus 242 ~~i~~~~~~~--~~~--~~~---~~---~~~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~--~--~~~~~~~~~~~~ 306 (423)
+.+.+|+... ... ... .. .....+..++|+|+|++|+++. .++.|.+|+... + +.+..+. .+
T Consensus 200 ~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~- 276 (343)
T 1ri6_A 200 SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP--TE- 276 (343)
T ss_dssp TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE--CS-
T ss_pred CEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec--CC-
Confidence 4444444321 110 000 00 1123467899999999877544 789999999872 2 2333332 22
Q ss_pred CCeEEEEECCCCCeEEEEe-CCCcEEEEecC
Q psy13076 307 GGVYAVAWKPDGTQLLTAS-GDKTCKLWDIE 336 (423)
Q Consensus 307 ~~i~~l~~~~~~~~l~s~s-~d~~i~iwd~~ 336 (423)
..+.+++|+|+|++|++++ .++.|++|++.
T Consensus 277 ~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 277 TQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp SSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 3378999999999888887 68999999553
No 142
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=1.1e-22 Score=205.19 Aligned_cols=309 Identities=13% Similarity=0.142 Sum_probs=204.7
Q ss_pred CCeEEEecCCeEEEEecCCCccc-ccccCCc-----------------ceEEEEEECCCCCEEEEEccCCcEEEEEcCCC
Q psy13076 102 GKNFLYTNGNSVIIRNIENPAIS-DIYTEHS-----------------CAVNVAKYSPSGFYIASGDISGKVRIWDTVNK 163 (423)
Q Consensus 102 ~~~~~~~~~~~~~i~~~~~~~~~-~~~~~h~-----------------~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~ 163 (423)
|..+++..+..+ +||+++++.. ..+..|. ..|.+++|+|| .+++.+ .+++|++||+.++
T Consensus 35 g~~~~~~~~~~i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~ 111 (706)
T 2z3z_A 35 GDNYVFIEGDDL-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGLVGFDMLAR 111 (706)
T ss_dssp TTEEEEEETTEE-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEEEEEETTTT
T ss_pred CCeEEEEeCCcE-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEEEEEECCCC
Confidence 455666555557 9999888773 3333333 46999999999 555554 4599999999876
Q ss_pred ceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecC-----CcceecccCCCcc--------------eeE
Q psy13076 164 EHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSET-----GTSVGEISGQSKP--------------INS 224 (423)
Q Consensus 164 ~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--------------i~~ 224 (423)
+... .......+.+++|+|||+.++.+.+ ....+|...+ +............ +.+
T Consensus 112 ~~~~---l~~~~~~~~~~~~SpdG~~la~~~~---~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~ 185 (706)
T 2z3z_A 112 KVTY---LFDTNEETASLDFSPVGDRVAYVRN---HNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKG 185 (706)
T ss_dssp EEEE---EECCTTCCTTCEECTTSSEEEEEET---TEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCS
T ss_pred ceEE---ccCCcccccCCcCCCCCCEEEEEEC---CeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCce
Confidence 5432 2223456788999999999988643 2345666655 5544333333222 478
Q ss_pred EEEecCCCeeEEEEe---------------------------------CCCeEEEEcCCCceeeeec--cccccCeEEEE
Q psy13076 225 CDFKPSRPFRIITGS---------------------------------EDNTIAVFEGPPFKFKMTK--QEHSRFVQAVR 269 (423)
Q Consensus 225 ~~~~~~~~~~~~s~s---------------------------------~d~~i~~~~~~~~~~~~~~--~~~~~~i~~l~ 269 (423)
+.|+|++.+ +++++ .+..|++|+....+..... ..+...+..++
T Consensus 186 ~~~SpDg~~-la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 264 (706)
T 2z3z_A 186 TFWSPKGSC-LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLS 264 (706)
T ss_dssp EEECTTSSE-EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEE
T ss_pred EEECCCCCE-EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEE
Confidence 999999987 45554 4467999998766543332 24566789999
Q ss_pred ECCCCCEEEEEEecC-----eEEEEECCCccceecccccccCC---CeEEEEECC--CCCeEEEEeCCCcEEEEecC-Cc
Q psy13076 270 YSPSGSHFASAGFDG-----KVFLYDGASADLVSELGNPAHKG---GVYAVAWKP--DGTQLLTASGDKTCKLWDIE-TK 338 (423)
Q Consensus 270 ~s~~g~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~~~~~---~i~~l~~~~--~~~~l~s~s~d~~i~iwd~~-~~ 338 (423)
|+|||++|++++.++ .|++||..+++....+....+.. .+.+++|+| +|++|++++.|+.++||++. ++
T Consensus 265 ~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~ 344 (706)
T 2z3z_A 265 WSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG 344 (706)
T ss_dssp ECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS
T ss_pred EECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC
Confidence 999999999988876 89999999884333332112222 235789999 99999999999999999886 55
Q ss_pred ceeeeeeeCceeEeeEEEEEecCcEEEEEeC-CC----cEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCC
Q psy13076 339 SAVSEFLMGNQVEDQQVSCLWQGDYLLTVSL-SG----FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHD 413 (423)
Q Consensus 339 ~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~-~~----~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D 413 (423)
+.+..+..+.......+..+++|+.|+..+. ++ .++.|+..+.. ...+ .|...+.+++||||+++|+..+.+
T Consensus 345 ~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~--~~~l-~~~~~~~~~~~spdg~~l~~~~~~ 421 (706)
T 2z3z_A 345 RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK--TKDL-TPESGMHRTQLSPDGSAIIDIFQS 421 (706)
T ss_dssp CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC--CEES-CCSSSEEEEEECTTSSEEEEEEEC
T ss_pred CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC--ceec-cCCCceEEEEECCCCCEEEEEecC
Confidence 5555443322111112456678988876554 43 56667766543 2333 377789999999999998766433
Q ss_pred ----CcEEEeeCCC
Q psy13076 414 ----GFITRWNAKT 423 (423)
Q Consensus 414 ----~~i~~W~~~~ 423 (423)
+.|++||+++
T Consensus 422 ~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 422 PTVPRKVTVTNIGK 435 (706)
T ss_dssp SSCSCEEEEEESSS
T ss_pred CCCCcEEEEEECCC
Confidence 5699999763
No 143
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=1.1e-23 Score=213.04 Aligned_cols=320 Identities=13% Similarity=0.108 Sum_probs=207.5
Q ss_pred CceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccc
Q psy13076 48 KPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIY 127 (423)
Q Consensus 48 ~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 127 (423)
..+.+++|+|+|+++++ +.||+|++||.++++....+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~------------------------------------------ 53 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLI------------------------------------------ 53 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE------------------------------------------
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEe------------------------------------------
Confidence 34778999999998776 78999999999876543221
Q ss_pred cCCc---ceEEEEEECCCCCEEEEEccC---------CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEc
Q psy13076 128 TEHS---CAVNVAKYSPSGFYIASGDIS---------GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGE 195 (423)
Q Consensus 128 ~~h~---~~i~~~~~sp~~~~l~s~~~d---------~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~ 195 (423)
.+|. ..|..++|||||++|++++.+ +.+.+||+.+++.........+...+..++|||||+.++.++.
T Consensus 54 ~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~ 133 (723)
T 1xfd_A 54 EGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE 133 (723)
T ss_dssp CTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET
T ss_pred ccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC
Confidence 1122 147789999999999998764 7788999987764211111122234788999999999998875
Q ss_pred CCceeeEEEeecCCcceecccCCCcc------------------eeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeee
Q psy13076 196 GRERFGHVFMSETGTSVGEISGQSKP------------------INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT 257 (423)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~ 257 (423)
. ...+++..++........+... +..+.|+|++..++.+...+..+.+|+.....
T Consensus 134 ~---~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~---- 206 (723)
T 1xfd_A 134 N---NIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT---- 206 (723)
T ss_dssp T---EEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS----
T ss_pred C---eEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccC----
Confidence 2 2345555555544333332222 26899999998744444444556666533211
Q ss_pred ccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccccc----ccCCCeEEEEECCCCCeEEEEeC----CCc
Q psy13076 258 KQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP----AHKGGVYAVAWKPDGTQLLTASG----DKT 329 (423)
Q Consensus 258 ~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~----~~~~~i~~l~~~~~~~~l~s~s~----d~~ 329 (423)
..+...+..+.|.++|.. ..+..|++||..+++....+... .+...+..++|+|||++|++.+. +..
T Consensus 207 -~~~~~~~~~~~~~~~G~~----~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 281 (723)
T 1xfd_A 207 -GSIYPTVKPYHYPKAGSE----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSI 281 (723)
T ss_dssp -SSSSCCCEEEECCBTTSC----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEE
T ss_pred -CcCCCcceeccCCCCCCC----CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEE
Confidence 112234678889888863 34568999999888754444321 13567889999999999877653 357
Q ss_pred EEEEecCCcceeeeeeeCcee--E--eeEEEEEecCcEEEEE--eCCC------cEEEEecCCCCC--ceEEeccCCCce
Q psy13076 330 CKLWDIETKSAVSEFLMGNQV--E--DQQVSCLWQGDYLLTV--SLSG------FISYLDVNNPST--PIRVIKGHNKPI 395 (423)
Q Consensus 330 i~iwd~~~~~~i~~~~~~~~~--~--~~~~~~~~~g~~l~~~--~~~~------~i~~~~~~~~~~--~~~~~~~h~~~v 395 (423)
|++||+.++++...+...... . ......+++|+.|+.. ..++ .+++||...... ....+..+...+
T Consensus 282 i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~ 361 (723)
T 1xfd_A 282 LTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDV 361 (723)
T ss_dssp EEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCE
T ss_pred EEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEE
Confidence 999999988765543221111 1 0245567799977754 4566 467777323222 023444334445
Q ss_pred eE-EEecCCCCeEEEecCC---CcEEEeeCC
Q psy13076 396 TA-LALSPDRGTVFTGSHD---GFITRWNAK 422 (423)
Q Consensus 396 ~~-i~~sp~~~~l~s~s~D---~~i~~W~~~ 422 (423)
.. ++|+||++.|+..+.+ +.+++|++.
T Consensus 362 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 362 TKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp EEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred EeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence 54 6999999999766554 889999864
No 144
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=3.2e-22 Score=182.62 Aligned_cols=283 Identities=10% Similarity=0.048 Sum_probs=189.5
Q ss_pred EEeCCCC-eEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcc
Q psy13076 54 ALSPDRG-TVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSC 132 (423)
Q Consensus 54 ~~~~~~~-~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~ 132 (423)
.|.+++. .+++++.+++|++||.+++++...+ ..+..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~------------------------------------------~~~~~ 41 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQI------------------------------------------TLGYD 41 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEE------------------------------------------ECCCC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeE------------------------------------------EccCC
Confidence 4555554 4778889999999999876554322 11223
Q ss_pred eEEEEEECCCCCEEEEEcc-CCcEEEEEcCCCce-eEEeeecCCCCCeeEEEECCCCCeEEEEEcCCce--eeEEEeecC
Q psy13076 133 AVNVAKYSPSGFYIASGDI-SGKVRIWDTVNKEH-ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRER--FGHVFMSET 208 (423)
Q Consensus 133 ~i~~~~~sp~~~~l~s~~~-d~~i~vwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~--~~~~~~~~~ 208 (423)
.+ .++|+|+|+++++++. ++.|.+||..+++. ... ......+..+++|+|++++++ ++..... ...+|+...
T Consensus 42 ~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~ 117 (331)
T 3u4y_A 42 FV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA--IQEGQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLK 117 (331)
T ss_dssp EE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE--EEECSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTT
T ss_pred cc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe--cccCCCCccceEECCCCCEEE-EecCCCCcccEEEEECCC
Confidence 45 8899999997766655 89999999987765 322 222234444499999999988 4433322 566777777
Q ss_pred CcceecccCCCcceeEEEEecCCCeeEEEEeCCCe-EEEEcCCCceee----eeccccccCeEEEEECCCCCEEEEEE-e
Q psy13076 209 GTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNT-IAVFEGPPFKFK----MTKQEHSRFVQAVRYSPSGSHFASAG-F 282 (423)
Q Consensus 209 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~-i~~~~~~~~~~~----~~~~~~~~~i~~l~~s~~g~~l~s~s-~ 282 (423)
++.+..+... ..+..++|+|++.+++++...++. +.+|+....... .........+..++|+|+|++++.++ .
T Consensus 118 ~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~ 196 (331)
T 3u4y_A 118 NKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLI 196 (331)
T ss_dssp TEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETT
T ss_pred CCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCC
Confidence 7766655543 346899999999876777777788 999986432111 11112334578999999999665554 6
Q ss_pred cCeEEEEECCCccc---eecccccccCCCeEEEEECCCCCeEEEE-eCCCcEEEEecCCccee--eeeeeCceeEeeEEE
Q psy13076 283 DGKVFLYDGASADL---VSELGNPAHKGGVYAVAWKPDGTQLLTA-SGDKTCKLWDIETKSAV--SEFLMGNQVEDQQVS 356 (423)
Q Consensus 283 dg~i~vwd~~~~~~---~~~~~~~~~~~~i~~l~~~~~~~~l~s~-s~d~~i~iwd~~~~~~i--~~~~~~~~~~~~~~~ 356 (423)
++.|.+||..+++. +..+. ....+..++|+|+|++|+.+ ..++.|.+||+.+++.. ..+..
T Consensus 197 ~~~v~v~d~~~~~~~~~~~~~~---~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~---------- 263 (331)
T 3u4y_A 197 GNSIGILETQNPENITLLNAVG---TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGH---------- 263 (331)
T ss_dssp TTEEEEEECSSTTSCEEEEEEE---CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEEC----------
T ss_pred CCeEEEEECCCCcccceeeecc---CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccc----------
Confidence 89999999998887 55553 23567889999999977655 45788999999887642 11100
Q ss_pred EEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEE-EecCCCcEEEeeCCC
Q psy13076 357 CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVF-TGSHDGFITRWNAKT 423 (423)
Q Consensus 357 ~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~-s~s~D~~i~~W~~~~ 423 (423)
. .. .........+.++|+||+++|+ ++..++.|.+||+++
T Consensus 264 ----------------------~---~~--~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 264 ----------------------G---LL--IDPRPLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp ----------------------C---CC--CCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred ----------------------c---cc--cCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 0 00 0001112236799999999875 455677999999763
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=2.3e-21 Score=178.42 Aligned_cols=270 Identities=16% Similarity=0.151 Sum_probs=191.5
Q ss_pred eeeEEEEeCCEEEEEec-------cceEEEEeccCCCCceeecccccCceeEEEEeCCCCe-EEEecCCCceEEeecCCc
Q psy13076 8 QQVSCLWQGDYLLTVSL-------SGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGT-VFTGSHDGFITRWNAKTE 79 (423)
Q Consensus 8 ~~~~~~~~~~~~~~~~~-------dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~-l~sg~~D~~i~vW~~~~~ 79 (423)
+.+++++||+++++++. ++.|.+||..+ .+....+.. ...+..++|+|++++ ++++..++.|.+||.+++
T Consensus 44 ~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 121 (353)
T 3vgz_A 44 YEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT-LEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTG 121 (353)
T ss_dssp EEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT-CCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTC
T ss_pred cceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC-CeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCC
Confidence 56788889999988874 67899999976 445555553 345788999999984 566677899999999998
Q ss_pred ceeecccCCCCC--------CceEEeeCCCCCeEEEec---CCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEE
Q psy13076 80 YIFATLPRTQRG--------QPIVLGGDPKGKNFLYTN---GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIAS 148 (423)
Q Consensus 80 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s 148 (423)
+....+...... .+..+.++|+|+.++... +..+.+|+.++++....+..+...+..+.|+|+++++++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 201 (353)
T 3vgz_A 122 EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYT 201 (353)
T ss_dssp CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEE
T ss_pred eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEE
Confidence 877665443211 134577889998766554 567999999998888877756666788999999999999
Q ss_pred EccCCcEEEEEcCCCceeEEeeecC--CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEE
Q psy13076 149 GDISGKVRIWDTVNKEHILKNEFHP--IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCD 226 (423)
Q Consensus 149 ~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 226 (423)
++.++.|.+||..+.+......... ....+..++|+|+++.+
T Consensus 202 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l------------------------------------ 245 (353)
T 3vgz_A 202 TNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRA------------------------------------ 245 (353)
T ss_dssp ECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEE------------------------------------
T ss_pred EcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEE------------------------------------
Confidence 9999999999998776543322211 12223445555555443
Q ss_pred EecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEE-ecCeEEEEECCCccceeccccccc
Q psy13076 227 FKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASADLVSELGNPAH 305 (423)
Q Consensus 227 ~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~ 305 (423)
+++...++.+.+||....+......... ...++|+|+|++++.++ .++.|.+||..+++.+..+..
T Consensus 246 --------~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~--- 312 (353)
T 3vgz_A 246 --------FITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT--- 312 (353)
T ss_dssp --------EEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC---
T ss_pred --------EEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec---
Confidence 3334445677777765544433332222 24689999999766555 689999999999887766642
Q ss_pred CCCeEEEEECCCCCeEEEEeCCC
Q psy13076 306 KGGVYAVAWKPDGTQLLTASGDK 328 (423)
Q Consensus 306 ~~~i~~l~~~~~~~~l~s~s~d~ 328 (423)
...+.+++|+|+|++|+.+..++
T Consensus 313 ~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 313 PTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp CSEEEEEEECTTSCEEEEEEECC
T ss_pred CCCCCeEEEcCCCCEEEEEEccc
Confidence 34678999999999777766554
No 146
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=1.6e-21 Score=178.56 Aligned_cols=271 Identities=11% Similarity=0.160 Sum_probs=180.2
Q ss_pred EEEEEccCCcEEEEEcCC-CceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec--CCc--ceecccCCC
Q psy13076 145 YIASGDISGKVRIWDTVN-KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE--TGT--SVGEISGQS 219 (423)
Q Consensus 145 ~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~ 219 (423)
.+++++.|+.|++||+.. ++... .........+..++|+|+++.+++++... ....+|..+ .+. .+..+....
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~ 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTL-TQVVDVPGQVQPMVVSPDKRYLYVGVRPE-FRVLAYRIAPDDGALTFAAESALPG 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEE-EEEEECSSCCCCEEECTTSSEEEEEETTT-TEEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEE-eeeEecCCCCceEEECCCCCEEEEeecCC-CeEEEEEecCCCCceeeccccccCC
Confidence 445557899999999853 22211 11122345688999999999988887653 234566555 333 223333333
Q ss_pred cceeEEEEecCCCeeEEEEeCCCeEEEEcC---CCceeeeeccccccCeEEEEECCCCCEEEEEE-ecCeEEEEECCC-c
Q psy13076 220 KPINSCDFKPSRPFRIITGSEDNTIAVFEG---PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGAS-A 294 (423)
Q Consensus 220 ~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~---~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~-~ 294 (423)
.+..++|+|++.++++++..++.|.+|+. ...+...... ....+.+++|+|+|+++++++ .++.|.+||+.+ +
T Consensus 85 -~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 162 (343)
T 1ri6_A 85 -SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG 162 (343)
T ss_dssp -CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred -CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCC
Confidence 77899999999876666667899999987 3222222222 233578899999999888887 899999999987 5
Q ss_pred ccee----cccccccCCCeEEEEECCCCCeEEEEe-CCCcEEEEecCC--cce--eeeeeeC-c----eeEeeEEEEEec
Q psy13076 295 DLVS----ELGNPAHKGGVYAVAWKPDGTQLLTAS-GDKTCKLWDIET--KSA--VSEFLMG-N----QVEDQQVSCLWQ 360 (423)
Q Consensus 295 ~~~~----~~~~~~~~~~i~~l~~~~~~~~l~s~s-~d~~i~iwd~~~--~~~--i~~~~~~-~----~~~~~~~~~~~~ 360 (423)
+... .+.. .....+..++|+|++++|+.++ .++.|++||+.. ++. ....... . ......+.+.++
T Consensus 163 ~~~~~~~~~~~~-~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 241 (343)
T 1ri6_A 163 HLVAQDPAEVTT-VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD 241 (343)
T ss_dssp CEEEEEEEEEEC-STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred ceeeeccccccc-CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCC
Confidence 4322 1111 1234678999999999776554 789999999953 332 1111100 0 112224566778
Q ss_pred CcEEEEE-eCCCcEEEEecCCCC---CceEEeccCCCceeEEEecCCCCeEEEec-CCCcEEEeeC
Q psy13076 361 GDYLLTV-SLSGFISYLDVNNPS---TPIRVIKGHNKPITALALSPDRGTVFTGS-HDGFITRWNA 421 (423)
Q Consensus 361 g~~l~~~-~~~~~i~~~~~~~~~---~~~~~~~~h~~~v~~i~~sp~~~~l~s~s-~D~~i~~W~~ 421 (423)
|+++++. ..++.+.+|++.... ..+..+..+.. +.+++|+|++++|++++ .|+.|.+|++
T Consensus 242 g~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 242 GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred CCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEE
Confidence 9888744 578999999997421 22333444444 89999999999887776 6899999954
No 147
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.91 E-value=4.6e-22 Score=200.97 Aligned_cols=330 Identities=11% Similarity=0.073 Sum_probs=216.1
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccC---ceeEEEEeCCCCeEEEecC---------CCceEEeec
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNK---PITALALSPDRGTVFTGSH---------DGFITRWNA 76 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~---~V~~l~~~~~~~~l~sg~~---------D~~i~vW~~ 76 (423)
.++.++||.++++ +.||.|++||+.+ .++...+.+|.. .|.+++|||||++|++++. |++|++||+
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIET-GQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSS-CCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCC-CcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 4566668976665 5799999999976 445556666654 4999999999999998876 799999999
Q ss_pred CCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccc-cCCcceE-----------------EEEE
Q psy13076 77 KTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIY-TEHSCAV-----------------NVAK 138 (423)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~h~~~i-----------------~~~~ 138 (423)
++++....... ......+.++|+|+.+++..++.+.+|++.+++..... .++...| ..+.
T Consensus 98 ~~g~~~~~~~l--~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~ 175 (719)
T 1z68_A 98 SNGEFVRGNEL--PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALW 175 (719)
T ss_dssp TTTEECCSSCC--CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred CCCccccceec--CcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEE
Confidence 99876311111 12334578999999999988899999999887665433 2333322 4799
Q ss_pred ECCCCCEEEEEccCC----------------------------------cEEEEEcCCCcee--EEe----eecCCCCCe
Q psy13076 139 YSPSGFYIASGDISG----------------------------------KVRIWDTVNKEHI--LKN----EFHPIGGPI 178 (423)
Q Consensus 139 ~sp~~~~l~s~~~d~----------------------------------~i~vwd~~~~~~~--~~~----~~~~~~~~v 178 (423)
|+|||++||+++.|. +|++||+.+++.. ... .+..+...+
T Consensus 176 wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (719)
T 1z68_A 176 WSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYF 255 (719)
T ss_dssp ECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEE
T ss_pred ECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceE
Confidence 999999999988652 7889998876531 111 112344568
Q ss_pred eEEEECCCCCeEEEEEcCCcee--eEEEe----ecCCcceecc----cCCCccee-----EEEEecCCCeeEE-EEeCCC
Q psy13076 179 KDIAWSPDNQRMVVVGEGRERF--GHVFM----SETGTSVGEI----SGQSKPIN-----SCDFKPSRPFRII-TGSEDN 242 (423)
Q Consensus 179 ~~v~~s~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~----~~~~~~i~-----~~~~~~~~~~~~~-s~s~d~ 242 (423)
.+++|+||++.+++........ ..+++ ..++.....+ ..+...+. .+.|+|++..+++ ++..++
T Consensus 256 ~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g 335 (719)
T 1z68_A 256 SWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDG 335 (719)
T ss_dssp EEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTS
T ss_pred EEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCC
Confidence 8999999977555543322222 33344 3344444334 24555555 7899999886444 444555
Q ss_pred --eEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEec-----CeEEEEECCC--cc-ceeccc--ccccCCCeE
Q psy13076 243 --TIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD-----GKVFLYDGAS--AD-LVSELG--NPAHKGGVY 310 (423)
Q Consensus 243 --~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~d-----g~i~vwd~~~--~~-~~~~~~--~~~~~~~i~ 310 (423)
.|.+|+...... ..+..+...+..+.++ +++.++..+.+ +...+|.... +. ....+. ...|...+.
T Consensus 336 ~~~l~~~~~~~~~~-~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~ 413 (719)
T 1z68_A 336 YKHIHYIKDTVENA-IQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYY 413 (719)
T ss_dssp CEEEEEESSCSTTC-EECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBE
T ss_pred ceEEEEEECCCCce-EecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceE
Confidence 566677544332 2333344446666666 88877666654 7788887643 32 122222 112556678
Q ss_pred EEEECCCCCeEEEE-eCC--CcEEEEecCCcceeeee
Q psy13076 311 AVAWKPDGTQLLTA-SGD--KTCKLWDIETKSAVSEF 344 (423)
Q Consensus 311 ~l~~~~~~~~l~s~-s~d--~~i~iwd~~~~~~i~~~ 344 (423)
.+.|+|++++++.. +.+ ..+.+||+.+++++..+
T Consensus 414 ~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~ 450 (719)
T 1z68_A 414 TASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKIL 450 (719)
T ss_dssp EEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEE
T ss_pred EEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEe
Confidence 89999999887743 333 46889999888765444
No 148
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=1.3e-20 Score=173.38 Aligned_cols=273 Identities=13% Similarity=0.103 Sum_probs=202.7
Q ss_pred ceEEEEEECCCCCEEEEEcc-------CCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEE
Q psy13076 132 CAVNVAKYSPSGFYIASGDI-------SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVF 204 (423)
Q Consensus 132 ~~i~~~~~sp~~~~l~s~~~-------d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~ 204 (423)
..+..++|+|+++++++++. ++.|.+||..+.+....... ...+..++|+|+++.++++..... ...++
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~v~~~~~~-~v~~~ 116 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN---DLKPFGATINNTTQTLWFGNTVNS-AVTAI 116 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE---SSCCCSEEEETTTTEEEEEETTTT-EEEEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec---CCCcceEEECCCCCEEEEEecCCC-EEEEE
Confidence 45778999999998888774 56899999988776544333 234678999999998777765433 45667
Q ss_pred eecCCcceecccCCCc---------ceeEEEEecCCCeeEEEE-eCCCeEEEEcCCCceeeeeccccccCeEEEEECCCC
Q psy13076 205 MSETGTSVGEISGQSK---------PINSCDFKPSRPFRIITG-SEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG 274 (423)
Q Consensus 205 ~~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~~~~s~-s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g 274 (423)
+..+++.+..+..+.. .+..+.++|++...+++. ..++.|.+||....+.......+...+..++|+|+|
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg 196 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG 196 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence 7777776665554321 267899999998755555 357899999988777666655455557889999999
Q ss_pred CEEEEEEecCeEEEEECCCccceecccc--cccCCCeEEEEECCCCCeEEEEeC-CCcEEEEecCCcceeeeeeeCceeE
Q psy13076 275 SHFASAGFDGKVFLYDGASADLVSELGN--PAHKGGVYAVAWKPDGTQLLTASG-DKTCKLWDIETKSAVSEFLMGNQVE 351 (423)
Q Consensus 275 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~~~i~~l~~~~~~~~l~s~s~-d~~i~iwd~~~~~~i~~~~~~~~~~ 351 (423)
+++++++.++.|.+||..+++....+.. ..+...+.+++|+|++++|+.++. ++.|.+||..+++.+..+.....
T Consensus 197 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-- 274 (353)
T 3vgz_A 197 KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-- 274 (353)
T ss_dssp TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--
T ss_pred CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--
Confidence 9999999999999999999887665532 124556788999999997776655 58999999999988777665433
Q ss_pred eeEEEEEecCcEEEEEe-CCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCC
Q psy13076 352 DQQVSCLWQGDYLLTVS-LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHD 413 (423)
Q Consensus 352 ~~~~~~~~~g~~l~~~~-~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D 413 (423)
..+.+.++|+++.++. .++.+.+||..+... +..+.. ...+.+++|+||+++|+.+..+
T Consensus 275 -~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 275 -LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV-VKTFDT-PTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp -CCEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEEEEC-CSEEEEEEECTTSCEEEEEEEC
T ss_pred -ceEEECCCCCEEEEEECCCCeEEEEECCCCeE-EEEEec-CCCCCeEEEcCCCCEEEEEEcc
Confidence 3466678898766555 689999999977533 334433 3478999999999976655443
No 149
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=1.2e-21 Score=178.80 Aligned_cols=270 Identities=11% Similarity=0.064 Sum_probs=174.1
Q ss_pred CeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcc-eEEEEE
Q psy13076 60 GTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSC-AVNVAK 138 (423)
Q Consensus 60 ~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~-~i~~~~ 138 (423)
++|++++.|++|++||..+++....+.. ++.. .+..++
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~ 40 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITI-----------------------------------------ADAGPTPMVPM 40 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEEC-----------------------------------------TTCTTCCCCEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEc-----------------------------------------CCCCCCccceE
Confidence 4789999999999999988765443211 1111 245678
Q ss_pred ECCCCCEE-EEEccCCcEEEEEcCCCceeEEeeecC---CCCCeeEEEECCCCCeEEEEEcC----------CceeeEEE
Q psy13076 139 YSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHP---IGGPIKDIAWSPDNQRMVVVGEG----------RERFGHVF 204 (423)
Q Consensus 139 ~sp~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~---~~~~v~~v~~s~~~~~~~~~~~~----------~~~~~~~~ 204 (423)
|+|+++++ +++..++.|.+||..+++......... ....+..++|+|+++.++++... ......++
T Consensus 41 ~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~ 120 (337)
T 1pby_B 41 VAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120 (337)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred EcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEE
Confidence 99999765 556668899999998876554333221 01146789999999988887521 12344566
Q ss_pred eecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEec-
Q psy13076 205 MSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD- 283 (423)
Q Consensus 205 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~d- 283 (423)
+..++.....+.. ...+..+.|+|++.++++ + ++.+.+|+....+.......+.. ...+.|+|+|++++..+.+
T Consensus 121 d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~-~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~ 195 (337)
T 1pby_B 121 DAETLSRRKAFEA-PRQITMLAWARDGSKLYG-L--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESS 195 (337)
T ss_dssp ETTTTEEEEEEEC-CSSCCCEEECTTSSCEEE-E--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTT
T ss_pred ECCCCcEEEEEeC-CCCcceeEECCCCCEEEE-e--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCC
Confidence 6666655555443 345778899999987444 4 68899999877665544333220 0123789999876554432
Q ss_pred C-----------------------eEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcce
Q psy13076 284 G-----------------------KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSA 340 (423)
Q Consensus 284 g-----------------------~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 340 (423)
+ .|.+||..+++.. .+....+...+.+++|+|+|++|+++ ++.|.+||+.+++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~ 272 (337)
T 1pby_B 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNAS 272 (337)
T ss_dssp TEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEE
T ss_pred CceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcC
Confidence 2 4689999888764 33333455678899999999999888 78999999988776
Q ss_pred eeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCC
Q psy13076 341 VSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNN 380 (423)
Q Consensus 341 i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~ 380 (423)
+..+..... ...+.+.++|+++++++.++.+.+||+.+
T Consensus 273 ~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~i~v~d~~~ 310 (337)
T 1pby_B 273 IKRVPLPHS--YYSVNVSTDGSTVWLGGALGDLAAYDAET 310 (337)
T ss_dssp EEEEECSSC--CCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred cceecCCCc--eeeEEECCCCCEEEEEcCCCcEEEEECcC
Confidence 554432211 12233334455554444455555555443
No 150
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.90 E-value=1.8e-21 Score=196.66 Aligned_cols=351 Identities=10% Similarity=0.040 Sum_probs=218.0
Q ss_pred EEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCC--CCceEEeeCCCCCeEEEecC----------CeEEEEecC
Q psy13076 52 ALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQR--GQPIVLGGDPKGKNFLYTNG----------NSVIIRNIE 119 (423)
Q Consensus 52 ~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~ 119 (423)
.++|+|++++++++ .|++|++||.+++.....+..... .....+.++|+|+.+++... ..+.+|+++
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 78999999766555 699999999999876554432211 12446789999998887643 689999999
Q ss_pred CCccc--ccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCC-----------------CeeE
Q psy13076 120 NPAIS--DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGG-----------------PIKD 180 (423)
Q Consensus 120 ~~~~~--~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-----------------~v~~ 180 (423)
+++.. ..+ ...+..++|||||++||.+. ++.|++||+.+++.... ....... ...+
T Consensus 99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l-~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQI-TFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp TTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC-CCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred CCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEE-ecCCCcCCeEcccccceeeeecccCccc
Confidence 88762 122 24578899999999999985 78999999977654321 1111111 1258
Q ss_pred EEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceee----e
Q psy13076 181 IAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK----M 256 (423)
Q Consensus 181 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~----~ 256 (423)
++|||||+.++.++................ .+......+.+...+. ......+++|+....+.. .
T Consensus 174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~------~~~~~~~~~~yp~~g~-----~~~~~~l~~~d~~~~~~~~~~~~ 242 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGD------EQYPRTINIPYPKAGA-----KNPVVRIFIIDTTYPAYVGPQEV 242 (719)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEEEECCS------SSSCEEEEEECCBTTS-----CCCEEEEEEEESSCHHHHCCEEC
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCC------CCCccceeecCCCCCC-----CCCeeEEEEEECCCCCccceeEc
Confidence 999999999998764322111111110000 1122234444443332 123347889987654421 1
Q ss_pred ----eccccccCeEEEEECCCCCEEEEEEec----CeEEEEE----CCCccceeccc--ccccCCCeE-----EEEECCC
Q psy13076 257 ----TKQEHSRFVQAVRYSPSGSHFASAGFD----GKVFLYD----GASADLVSELG--NPAHKGGVY-----AVAWKPD 317 (423)
Q Consensus 257 ----~~~~~~~~i~~l~~s~~g~~l~s~s~d----g~i~vwd----~~~~~~~~~~~--~~~~~~~i~-----~l~~~~~ 317 (423)
.+..+...+..++|+||++++++.... ..|++|| ..+++....+. ...|.+.+. .++|+||
T Consensus 243 ~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd 322 (719)
T 1z68_A 243 PVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYD 322 (719)
T ss_dssp CCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTT
T ss_pred cCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCC
Confidence 123567788999999998877764433 2488999 77776543331 024556665 7899999
Q ss_pred CCeEEE--EeCCC--cEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCC-----CcEEEEecCC--CCCceE
Q psy13076 318 GTQLLT--ASGDK--TCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLS-----GFISYLDVNN--PSTPIR 386 (423)
Q Consensus 318 ~~~l~s--~s~d~--~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~-----~~i~~~~~~~--~~~~~~ 386 (423)
|+.|+. +..++ .|.+||+.+++. ..+... .......... +|+.++..+.. +...+|.+.. ......
T Consensus 323 g~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~-~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 399 (719)
T 1z68_A 323 AISYYKIFSDKDGYKHIHYIKDTVENA-IQITSG-KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKK 399 (719)
T ss_dssp SSCEEEEEECTTSCEEEEEESSCSTTC-EECSCS-SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEE
T ss_pred CCeEEEEEEccCCceEEEEEECCCCce-EecccC-ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCce
Confidence 996654 44555 466777766652 222221 1112223333 78888766654 6777777654 211223
Q ss_pred Eec----cCCCceeEEEecCCCCeEE-EecCC--CcEEEeeCC
Q psy13076 387 VIK----GHNKPITALALSPDRGTVF-TGSHD--GFITRWNAK 422 (423)
Q Consensus 387 ~~~----~h~~~v~~i~~sp~~~~l~-s~s~D--~~i~~W~~~ 422 (423)
.+. +|...+..++|+||+++|+ +++.+ ..+.+||++
T Consensus 400 ~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~ 442 (719)
T 1z68_A 400 CVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGR 442 (719)
T ss_dssp ESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSS
T ss_pred eccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECC
Confidence 333 3677889999999999876 44443 467788764
No 151
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.90 E-value=1.4e-20 Score=190.41 Aligned_cols=357 Identities=11% Similarity=0.060 Sum_probs=217.5
Q ss_pred cCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCC--ce--EEeeCCCCCeEEEecC----------Ce
Q psy13076 47 NKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQ--PI--VLGGDPKGKNFLYTNG----------NS 112 (423)
Q Consensus 47 ~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~----------~~ 112 (423)
.....+++|+|++++++++ |++|++||++++.....+..+.... .. .+.++|+|+.+++..+ ..
T Consensus 16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 3446689999999999887 9999999999987655544332111 11 2577999998887654 45
Q ss_pred EEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCC-----------------
Q psy13076 113 VIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIG----------------- 175 (423)
Q Consensus 113 ~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~----------------- 175 (423)
+.+|++++++... +..|...+...+|||||+.||.+ .|+.|.+|+..+++... .......
T Consensus 94 ~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~-lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 94 YDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYR-ITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEE-CCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEE-EcCCCCccceecCcccccccchhc
Confidence 6799999988654 56777889999999999999988 57899999987765332 1111111
Q ss_pred CCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC---c
Q psy13076 176 GPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP---F 252 (423)
Q Consensus 176 ~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~---~ 252 (423)
+....+.|||||+.++....+............... ..+......+.|.+.+.. .....|++|+... .
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~----~~~~~~~~~~~yp~~G~~-----~~~~~l~v~d~~~~~~~ 241 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE----SLQYPKTVRVPYPKAGAV-----NPTVKFFVVNTDSLSSV 241 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST----TCSSCEEEEEECCBTTSC-----CCEEEEEEEETTSCCSS
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCC----CCCCCcceeecCCCCcCc-----CCeeEEEEEECCCCCCC
Confidence 122458999999999887643321111111100000 012233445555554431 2223688898766 4
Q ss_pred ---eeeeecc-----ccccCeEEEEECCCCCEEEEEEe----cCeEEEEECCCcc----c--eecccccccCCCeE----
Q psy13076 253 ---KFKMTKQ-----EHSRFVQAVRYSPSGSHFASAGF----DGKVFLYDGASAD----L--VSELGNPAHKGGVY---- 310 (423)
Q Consensus 253 ---~~~~~~~-----~~~~~i~~l~~s~~g~~l~s~s~----dg~i~vwd~~~~~----~--~~~~~~~~~~~~i~---- 310 (423)
+...... .+...+..++|+|||+.++.... +..|++||..+++ + ...+....|.+.+.
T Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~ 321 (740)
T 4a5s_A 242 TNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 321 (740)
T ss_dssp SCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSC
T ss_pred CcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcC
Confidence 2221111 36778999999999997666543 3379999998876 2 22221123555544
Q ss_pred -EEEECCCCCeEE-EEeC-CC--cEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCC-----C--cEEEEec
Q psy13076 311 -AVAWKPDGTQLL-TASG-DK--TCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLS-----G--FISYLDV 378 (423)
Q Consensus 311 -~l~~~~~~~~l~-s~s~-d~--~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~-----~--~i~~~~~ 378 (423)
.++|+|||+.|+ ..+. +| .|.+||..+++... +..+ ....... ..++++.|+..+.. + .++..++
T Consensus 322 ~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g-~~~v~~~-~~~d~~~i~f~~~~~~~~~~~~~ly~v~~ 398 (740)
T 4a5s_A 322 SEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKG-TWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQL 398 (740)
T ss_dssp CCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCS-SSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEET
T ss_pred CCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-cccC-CEEEEEE-EEEeCCEEEEEEecCCCCCceeEEEEEEC
Confidence 789999999877 6654 33 58888887765432 2222 1111111 22567777655443 3 3444454
Q ss_pred CCCCCceEEec----cCCCceeEEEecCCCCeEEEecCC---CcEEEeeC
Q psy13076 379 NNPSTPIRVIK----GHNKPITALALSPDRGTVFTGSHD---GFITRWNA 421 (423)
Q Consensus 379 ~~~~~~~~~~~----~h~~~v~~i~~sp~~~~l~s~s~D---~~i~~W~~ 421 (423)
..... ...+. +........+|||++++++..... ..+.+++.
T Consensus 399 ~g~~~-~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~ 447 (740)
T 4a5s_A 399 IDYTK-VTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSS 447 (740)
T ss_dssp TEEEE-EEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEET
T ss_pred CCCCc-ceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEEC
Confidence 33211 11222 234578899999999987643322 24455544
No 152
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.89 E-value=9.6e-22 Score=193.73 Aligned_cols=267 Identities=13% Similarity=0.084 Sum_probs=181.0
Q ss_pred ccceeeEEEEeCCEEEEEec-cceEEEEeccCCCCceeeccccc-CceeEEEEeCCCCeEEEecC---CCceEEeecCC-
Q psy13076 5 VEDQQVSCLWQGDYLLTVSL-SGFISYLDVNNPSTPIRVIKGHN-KPITALALSPDRGTVFTGSH---DGFITRWNAKT- 78 (423)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~-dg~i~~~d~~~~~~~~~~~~gh~-~~V~~l~~~~~~~~l~sg~~---D~~i~vW~~~~- 78 (423)
+.-+.+++++||++||.++. ||.++||+++. .. ...+..|. ..|..++|+|+ +++++++. +...++|.+..
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~-g~-~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDG-GE-TVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEET-TE-EEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcC-CC-cEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 34577889999999999987 99999999853 33 44555555 68999999999 78887664 56567765432
Q ss_pred --cceeecccCCCCCCceEEeeCCCCC--eEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccC--
Q psy13076 79 --EYIFATLPRTQRGQPIVLGGDPKGK--NFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS-- 152 (423)
Q Consensus 79 --~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d-- 152 (423)
+... .+... .+ .....++|+|+ .++........+|++++++.......+. .++.|+|||+++++++.+
T Consensus 99 ~~g~~~-~l~~~-~~-~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~ 172 (582)
T 3o4h_A 99 RPGEEQ-RLEAV-KP-MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGG 172 (582)
T ss_dssp STTCCE-ECTTS-CS-BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEET
T ss_pred CCCccc-cccCC-CC-ceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCC
Confidence 2111 22111 12 22445666664 3444445566699999887766554443 788999999999988877
Q ss_pred --CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecC
Q psy13076 153 --GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPS 230 (423)
Q Consensus 153 --~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 230 (423)
..|.+||+.+++.. .+....+.+..++|+|||+.++..
T Consensus 173 ~~~~i~~~d~~~g~~~---~l~~~~~~~~~~~~SpDG~~l~~~------------------------------------- 212 (582)
T 3o4h_A 173 GRVSLFTSNLSSGGLR---VFDSGEGSFSSASISPGMKVTAGL------------------------------------- 212 (582)
T ss_dssp TEEEEEEEETTTCCCE---EECCSSCEEEEEEECTTSCEEEEE-------------------------------------
T ss_pred CCeEEEEEcCCCCCce---EeecCCCccccceECCCCCEEEEc-------------------------------------
Confidence 78999998776643 223344667888888888876622
Q ss_pred CCeeEEEEeCCC--eEEEEcCCCceeeeeccccccCeEEEE--------ECCCCCEEEEEEecCeEEEEECCCccceecc
Q psy13076 231 RPFRIITGSEDN--TIAVFEGPPFKFKMTKQEHSRFVQAVR--------YSPSGSHFASAGFDGKVFLYDGASADLVSEL 300 (423)
Q Consensus 231 ~~~~~~s~s~d~--~i~~~~~~~~~~~~~~~~~~~~i~~l~--------~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~ 300 (423)
..++ .|++|+....+.. ....+...+..++ |+|||.++++++.|+.+++|+. ++....
T Consensus 213 --------~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~- 280 (582)
T 3o4h_A 213 --------ETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA- 280 (582)
T ss_dssp --------ECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC-
T ss_pred --------cCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc-
Confidence 2222 4555554443333 3333433343344 9999988999999999999998 554331
Q ss_pred cccccCCCeEEEEECCCCCeEEEEeCCCc---EEEEecCC
Q psy13076 301 GNPAHKGGVYAVAWKPDGTQLLTASGDKT---CKLWDIET 337 (423)
Q Consensus 301 ~~~~~~~~i~~l~~~~~~~~l~s~s~d~~---i~iwd~~~ 337 (423)
..+.+.+++|+ +++++++++.+.+ +.+||...
T Consensus 281 ----~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 281 ----PQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp ----CSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred ----CCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 34668899999 9999999888754 66666543
No 153
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.89 E-value=6.8e-21 Score=174.85 Aligned_cols=275 Identities=10% Similarity=0.055 Sum_probs=184.6
Q ss_pred EEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEe--cCCeEEEEecCCCcccccccC
Q psy13076 52 ALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYT--NGNSVIIRNIENPAISDIYTE 129 (423)
Q Consensus 52 ~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~ 129 (423)
.+++++++.++++++.+++|++||.++++....+.......+..+.++|+|+.++.. .+..+.+|++++++....+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 346778888999999999999999999887766654332245567788999865544 356899999998877665543
Q ss_pred -C-----cceEEEEEECCCCCEEEEEccC------------CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEE
Q psy13076 130 -H-----SCAVNVAKYSPSGFYIASGDIS------------GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMV 191 (423)
Q Consensus 130 -h-----~~~i~~~~~sp~~~~l~s~~~d------------~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~ 191 (423)
+ ...+..++|+|+|+++++++.+ +.|.+||+.+++.............+.+++|+|+++ ++
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~ 162 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LY 162 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EE
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EE
Confidence 2 2336788999999999998865 899999987743221111111234578899999999 55
Q ss_pred EEEcCCceeeEEEeecCCcceecccCCC--c----------------------ceeEEEEecCCCee----------EEE
Q psy13076 192 VVGEGRERFGHVFMSETGTSVGEISGQS--K----------------------PINSCDFKPSRPFR----------IIT 237 (423)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------------------~i~~~~~~~~~~~~----------~~s 237 (423)
+.+ . . ..+++..+++....+.... . ....+.+.+++... +..
T Consensus 163 ~~~-~-~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 238 (349)
T 1jmx_B 163 VAG-P-D--IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 238 (349)
T ss_dssp EES-S-S--EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred Ecc-C-c--EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence 532 2 2 4556655555444433221 0 12233443322100 001
Q ss_pred EeCCCeEEEEcCCCceeeeeccccccCeEEEEECC-CCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECC
Q psy13076 238 GSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSP-SGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP 316 (423)
Q Consensus 238 ~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~ 316 (423)
...++.+.+++. ..+...+..++++| +|++++++ ++.|.+||+.+++....+.. ...+.+++|+|
T Consensus 239 ~~~~~~~~~~~~---------~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~ 304 (349)
T 1jmx_B 239 DLKTGKTHTQEF---------ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL---DHTYYCVAFDK 304 (349)
T ss_dssp ETTTCCEEEEEE---------EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC---SSCCCEEEECS
T ss_pred eccCCcEEeccc---------ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC---CCCccceEECC
Confidence 112233333321 22445678899999 99998888 89999999999887666542 23467899999
Q ss_pred CCCeEEEEeCCCcEEEEecCCcceeeeee
Q psy13076 317 DGTQLLTASGDKTCKLWDIETKSAVSEFL 345 (423)
Q Consensus 317 ~~~~l~s~s~d~~i~iwd~~~~~~i~~~~ 345 (423)
+|++|++++.++.|++||+.+++.+..+.
T Consensus 305 dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 305 KGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp SSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEecCCCeEEEEeccccceeeeee
Confidence 99999988889999999999988776654
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=3.3e-20 Score=170.53 Aligned_cols=272 Identities=14% Similarity=0.168 Sum_probs=174.9
Q ss_pred ccceEEEEeccCCCCcee--ecccccCceeEEEEeCCCCeEEEecC---CCceEEeecCCcceeecccCCCCCCceEEee
Q psy13076 24 LSGFISYLDVNNPSTPIR--VIKGHNKPITALALSPDRGTVFTGSH---DGFITRWNAKTEYIFATLPRTQRGQPIVLGG 98 (423)
Q Consensus 24 ~dg~i~~~d~~~~~~~~~--~~~gh~~~V~~l~~~~~~~~l~sg~~---D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~ 98 (423)
.++.|.+|+++..+.... ....+...+..++|+|+++ |++++. ++.|++|++.++.....
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~-------------- 78 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKL-------------- 78 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEE--------------
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEe--------------
Confidence 456788888765333232 2345667788999999999 555543 68999999966532110
Q ss_pred CCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEc-cCCcEEEEEcCC-CceeEEeeecC---
Q psy13076 99 DPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD-ISGKVRIWDTVN-KEHILKNEFHP--- 173 (423)
Q Consensus 99 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~-~d~~i~vwd~~~-~~~~~~~~~~~--- 173 (423)
..+..+...+..++|+|+|+++++++ .+++|++|++.. +..........
T Consensus 79 --------------------------~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~ 132 (347)
T 3hfq_A 79 --------------------------NTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGH 132 (347)
T ss_dssp --------------------------EEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCC
T ss_pred --------------------------eeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCC
Confidence 00112334566789999999888887 679999999853 22211111111
Q ss_pred ------CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec-CCcce--eccc-CCCcceeEEEEecCCCeeEEEEeCCCe
Q psy13076 174 ------IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE-TGTSV--GEIS-GQSKPINSCDFKPSRPFRIITGSEDNT 243 (423)
Q Consensus 174 ------~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~-~~~~~i~~~~~~~~~~~~~~s~s~d~~ 243 (423)
....+.+++|+|+|+ ++++..... ...+|... .+... ..+. .....+..++|+|++.++++++..++.
T Consensus 133 ~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~-~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~ 210 (347)
T 3hfq_A 133 GPRPEQDGSHIHYTDLTPDNR-LAVIDLGSD-KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQ 210 (347)
T ss_dssp CSSTTCSSCCEEEEEECTTSC-EEEEETTTT-EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred CCCccccCCCceEEEECCCCc-EEEEeCCCC-EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCE
Confidence 112477899999999 665544333 34566665 33221 1111 122356789999999987777788899
Q ss_pred EEEEcCCC--ceee--eeccccc------cCeEEEEECCCCCEEE-EEEecCeEEEEECCCc---cceecccccccCCCe
Q psy13076 244 IAVFEGPP--FKFK--MTKQEHS------RFVQAVRYSPSGSHFA-SAGFDGKVFLYDGASA---DLVSELGNPAHKGGV 309 (423)
Q Consensus 244 i~~~~~~~--~~~~--~~~~~~~------~~i~~l~~s~~g~~l~-s~s~dg~i~vwd~~~~---~~~~~~~~~~~~~~i 309 (423)
+.+|+... .++. ....... ..+..++|+|+|++|+ +...++.|.+|++... +.+..+ ..+...+
T Consensus 211 v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~--~~~~~~~ 288 (347)
T 3hfq_A 211 IASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQI--STEGDFP 288 (347)
T ss_dssp EEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEE--ECSSSCC
T ss_pred EEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEE--ecCCCCc
Confidence 99997542 2221 1111111 3478899999999874 4556899999998632 222222 2344567
Q ss_pred EEEEECCCCCeEEEEeCC-CcEEEE--ecCCcce
Q psy13076 310 YAVAWKPDGTQLLTASGD-KTCKLW--DIETKSA 340 (423)
Q Consensus 310 ~~l~~~~~~~~l~s~s~d-~~i~iw--d~~~~~~ 340 (423)
.+++|+|+|++|++++.+ +.|.+| |..++++
T Consensus 289 ~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 289 RDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp CEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred CeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 899999999988887764 899999 5455554
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.88 E-value=5.2e-21 Score=188.49 Aligned_cols=271 Identities=11% Similarity=0.046 Sum_probs=186.7
Q ss_pred cceEEEEEECCCCCEEEEEcc-CCcEEEEEcCCCceeEEeeecCCC-CCeeEEEECCCCCeEEEEEc-CCceeeEEEeec
Q psy13076 131 SCAVNVAKYSPSGFYIASGDI-SGKVRIWDTVNKEHILKNEFHPIG-GPIKDIAWSPDNQRMVVVGE-GRERFGHVFMSE 207 (423)
Q Consensus 131 ~~~i~~~~~sp~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~~~~~~~-~~~~~~~~~~~~ 207 (423)
..+|.+++|+|||++||+++. |++++||++..++... ..... ..+..++|+|| +.+++... .......+|...
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~---lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK---LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE---CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe---eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 457999999999999999887 9999999986554321 22222 46889999999 55544442 122223454443
Q ss_pred C---CcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEec-
Q psy13076 208 T---GTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD- 283 (423)
Q Consensus 208 ~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~d- 283 (423)
. +... .+... ......+|+|++...+++...++.+.+|+....+....... .. .+++|+|||+++++++.+
T Consensus 97 ~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~-~~--~~~~~spDG~~la~~~~~~ 171 (582)
T 3o4h_A 97 TSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL-PG--FGFVSDIRGDLIAGLGFFG 171 (582)
T ss_dssp TTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE-SS--CEEEEEEETTEEEEEEEEE
T ss_pred ccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC-CC--ceEEECCCCCEEEEEEEcC
Confidence 3 2222 22221 23346688998876555555555566998765554333222 22 688999999999988887
Q ss_pred ---CeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCC--cEEEEecCCcceeeeeeeCceeEeeEEE--
Q psy13076 284 ---GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK--TCKLWDIETKSAVSEFLMGNQVEDQQVS-- 356 (423)
Q Consensus 284 ---g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~--~i~iwd~~~~~~i~~~~~~~~~~~~~~~-- 356 (423)
+.|++||..+++.. .+ ..|.+.+..++|+|||++|+++..++ .|++||+.+++.. .+ ...........
T Consensus 172 ~~~~~i~~~d~~~g~~~-~l--~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~-~~~~~~~~~~~~~ 246 (582)
T 3o4h_A 172 GGRVSLFTSNLSSGGLR-VF--DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL-ELPSKDFSSYRPT 246 (582)
T ss_dssp TTEEEEEEEETTTCCCE-EE--CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC-CCSCSHHHHHCCS
T ss_pred CCCeEEEEEcCCCCCce-Ee--ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec-cCCCcChhhhhhc
Confidence 78999999887754 44 34677889999999999999888888 8999999988765 22 22111111122
Q ss_pred ------EEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCc---EEEeeCC
Q psy13076 357 ------CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGF---ITRWNAK 422 (423)
Q Consensus 357 ------~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~---i~~W~~~ 422 (423)
.+++|..+++++.++.+++|++ + .. ...+.+.|.+++|+ +++++++++.+.+ +.+||..
T Consensus 247 ~~~~~~~spdg~~~~~~~~~g~~~l~~~--g-~~---~~~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 247 AITWLGYLPDGRLAVVARREGRSAVFID--G-ER---VEAPQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEEEECTTSCEEEEEEETTEEEEEET--T-EE---ECCCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred cccceeEcCCCcEEEEEEcCCcEEEEEE--C-Ce---eccCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 5678977788899999999998 2 22 22455789999999 9999998887744 6666653
No 156
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=1.8e-19 Score=165.61 Aligned_cols=268 Identities=13% Similarity=0.088 Sum_probs=172.4
Q ss_pred cCCcEEEEEcCC--CceeEEeeecCCCCCeeEEEECCCCCeEEEEEc-CCceeeEEEeecCCc--ceecccCCCcceeEE
Q psy13076 151 ISGKVRIWDTVN--KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGE-GRERFGHVFMSETGT--SVGEISGQSKPINSC 225 (423)
Q Consensus 151 ~d~~i~vwd~~~--~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~ 225 (423)
.++.|.+|++.. ++... .........+..++|+|+|+ +++++. +......+|..+.+. .+..+..+...+..+
T Consensus 14 ~~~~i~v~~~d~~tg~~~~-~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~ 91 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTN-DGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV 91 (347)
T ss_dssp SCCEEEEEEEETTTTEEEE-EEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEE
T ss_pred CCCCEEEEEEcCCCCeEEE-eeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEE
Confidence 356788887654 33222 11122234567899999999 666554 234445566665544 333334456678899
Q ss_pred EEecCCCeeEEEEeCCCeEEEEcCC---Cceeeeeccc---------cccCeEEEEECCCCCEEEEEEecCeEEEEECC-
Q psy13076 226 DFKPSRPFRIITGSEDNTIAVFEGP---PFKFKMTKQE---------HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGA- 292 (423)
Q Consensus 226 ~~~~~~~~~~~s~s~d~~i~~~~~~---~~~~~~~~~~---------~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~- 292 (423)
+|+|++.+++++...++.+.+|+.. .......... ....+.+++|+|+|+++++...++.|.+|+..
T Consensus 92 a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~ 171 (347)
T 3hfq_A 92 AVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSD 171 (347)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECT
T ss_pred EECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECC
Confidence 9999998755555578999999864 2222111111 12347789999999966666678899999988
Q ss_pred Cccceec--ccccccCCCeEEEEECCCCCeEEE-EeCCCcEEEEecCC--cce--eeeeeeCc-----eeEeeEEEEEec
Q psy13076 293 SADLVSE--LGNPAHKGGVYAVAWKPDGTQLLT-ASGDKTCKLWDIET--KSA--VSEFLMGN-----QVEDQQVSCLWQ 360 (423)
Q Consensus 293 ~~~~~~~--~~~~~~~~~i~~l~~~~~~~~l~s-~s~d~~i~iwd~~~--~~~--i~~~~~~~-----~~~~~~~~~~~~ 360 (423)
+++.... +.. .....+..++|+|+|++|++ +..++.|++|++.. ++. +....... ......+.+.++
T Consensus 172 ~g~~~~~~~~~~-~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spd 250 (347)
T 3hfq_A 172 AGQLSEQSVLTM-EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHD 250 (347)
T ss_dssp TSCEEEEEEEEC-CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTT
T ss_pred CCcEEEeeeEEc-CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCC
Confidence 4443211 111 12235788999999996655 56688999999874 432 11111111 022445667789
Q ss_pred CcEEE-EEeCCCcEEEEecCCCC--CceEEeccCCCceeEEEecCCCCeEEEecC-CCcEEEeeC
Q psy13076 361 GDYLL-TVSLSGFISYLDVNNPS--TPIRVIKGHNKPITALALSPDRGTVFTGSH-DGFITRWNA 421 (423)
Q Consensus 361 g~~l~-~~~~~~~i~~~~~~~~~--~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~-D~~i~~W~~ 421 (423)
|++|+ +...++.+.+|++.... ..+..+..|...++.++|+||+++|++++. ++.|.+|++
T Consensus 251 G~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 251 GHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp SCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence 99884 55678999999986322 234445566777999999999998877765 589999943
No 157
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.86 E-value=4.9e-19 Score=163.91 Aligned_cols=287 Identities=13% Similarity=0.181 Sum_probs=174.2
Q ss_pred EEEEEecc--ceEEEEeccCCCCceeecc----cccCceeEEEEeCCCCeEEEecCCCceEEeecC-CcceeecccCCCC
Q psy13076 18 YLLTVSLS--GFISYLDVNNPSTPIRVIK----GHNKPITALALSPDRGTVFTGSHDGFITRWNAK-TEYIFATLPRTQR 90 (423)
Q Consensus 18 ~~~~~~~d--g~i~~~d~~~~~~~~~~~~----gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~-~~~~~~~~~~~~~ 90 (423)
+++.|++. +.|.+++++.....+..+. ++...+..++|+|++++|++++.+ +|.+|++. ++++.........
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 34556654 5788887753333232222 234578899999999999999888 99999997 6665432221111
Q ss_pred CCceEEeeCCCCCe-EEE-e--------------cCCeEEEEecC-CCccccccc----CCcceEEEEEECCCCCEEEEE
Q psy13076 91 GQPIVLGGDPKGKN-FLY-T--------------NGNSVIIRNIE-NPAISDIYT----EHSCAVNVAKYSPSGFYIASG 149 (423)
Q Consensus 91 ~~~~~~~~~~~~~~-~~~-~--------------~~~~~~i~~~~-~~~~~~~~~----~h~~~i~~~~~sp~~~~l~s~ 149 (423)
+.+..+.++|+|+. +++ . .+..+.+|+++ ++++...+. .+...++.++|+|||++++++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 23444677899985 332 2 35678999986 455543333 245678999999999988876
Q ss_pred cc-CCcEEEEEcC-CCceeEEeeec--CCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEE
Q psy13076 150 DI-SGKVRIWDTV-NKEHILKNEFH--PIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSC 225 (423)
Q Consensus 150 ~~-d~~i~vwd~~-~~~~~~~~~~~--~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 225 (423)
+. ++.|++|++. +++........ .....+..++|+|+|++++++..... ...++..+..
T Consensus 163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~-~v~v~~~~~~---------------- 225 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGN-RICEYVIDPA---------------- 225 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTT-EEEEEEECTT----------------
T ss_pred cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCC-eEEEEEEeCC----------------
Confidence 64 6899999997 55432222221 12345788889999887766543221 1122221100
Q ss_pred EEecCCCeeEEEEeCCCeEEEEc-CCCceeeeecccccc------CeEEEE-ECCCCCEEEEEEecC------eEEEEEC
Q psy13076 226 DFKPSRPFRIITGSEDNTIAVFE-GPPFKFKMTKQEHSR------FVQAVR-YSPSGSHFASAGFDG------KVFLYDG 291 (423)
Q Consensus 226 ~~~~~~~~~~~s~s~d~~i~~~~-~~~~~~~~~~~~~~~------~i~~l~-~s~~g~~l~s~s~dg------~i~vwd~ 291 (423)
.+..... +.... .+. ....+.. .+..++ |+|||++|++++.+. .|.+|++
T Consensus 226 ----~g~~~~~-------~~~~~~~~~-----~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~ 289 (365)
T 1jof_A 226 ----THMPVYT-------HHSFPLIPP-----GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL 289 (365)
T ss_dssp ----TCCEEEE-------EEEEESSCT-----TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred ----CCcEEEc-------cceEEcCCC-----CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence 0000000 00000 000 0011121 467899 999999988776543 8999998
Q ss_pred C-Cccceeccc-ccccCCCeEEEEECC---CCCeEEEEeCC-CcEEEEecCCc
Q psy13076 292 A-SADLVSELG-NPAHKGGVYAVAWKP---DGTQLLTASGD-KTCKLWDIETK 338 (423)
Q Consensus 292 ~-~~~~~~~~~-~~~~~~~i~~l~~~~---~~~~l~s~s~d-~~i~iwd~~~~ 338 (423)
. +++...... ...+...+..++|+| +|++|++++.+ ++|++|++...
T Consensus 290 ~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 290 RDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 6 555332111 112334466789999 89999998764 89999998765
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.85 E-value=1.1e-17 Score=154.59 Aligned_cols=294 Identities=13% Similarity=0.110 Sum_probs=184.8
Q ss_pred CCEEEEEe----ccceEEEEeccCCCCceeec-ccccCceeEEEEeCCCCeEEEecCC----CceEEeecCC--cce--e
Q psy13076 16 GDYLLTVS----LSGFISYLDVNNPSTPIRVI-KGHNKPITALALSPDRGTVFTGSHD----GFITRWNAKT--EYI--F 82 (423)
Q Consensus 16 ~~~~~~~~----~dg~i~~~d~~~~~~~~~~~-~gh~~~V~~l~~~~~~~~l~sg~~D----~~i~vW~~~~--~~~--~ 82 (423)
..+++.++ .++.|.+|+++.....+..+ ..|...+..++|+|++++|++++.+ +.|++|+++. +.+ +
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 34555554 35789999886433222221 1267788899999999999998876 8999998765 432 2
Q ss_pred ecccCCCCCCceEEeeCCCCCeEEEec--CCeEEEEecCCCcccccc--------------cCCcceEEEEEECCCCCEE
Q psy13076 83 ATLPRTQRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIY--------------TEHSCAVNVAKYSPSGFYI 146 (423)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~--------------~~h~~~i~~~~~sp~~~~l 146 (423)
.... .....+..+.. +++.++..+ +..+.+|+++.......+ ..+...+++++|+|+|+++
T Consensus 93 ~~~~-~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l 169 (361)
T 3scy_A 93 NTQK-TMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL 169 (361)
T ss_dssp EEEE-CSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE
T ss_pred eEec-cCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE
Confidence 2111 12234445555 676665553 568999998643222111 1123346889999999977
Q ss_pred EEEc-cCCcEEEEEcCCCce------eE-----EeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcc--e
Q psy13076 147 ASGD-ISGKVRIWDTVNKEH------IL-----KNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTS--V 212 (423)
Q Consensus 147 ~s~~-~d~~i~vwd~~~~~~------~~-----~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 212 (423)
+.++ .++.|++|++..... +. .............++|+|+|++++++..... ...+|....+.. +
T Consensus 170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~-~v~v~~~~~g~~~~~ 248 (361)
T 3scy_A 170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGG-TVIAFRYADGMLDEI 248 (361)
T ss_dssp EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTC-EEEEEEEETTEEEEE
T ss_pred EEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCC-eEEEEEecCCceEEe
Confidence 6554 578999998875431 11 1111223445789999999998888764433 345666654432 2
Q ss_pred ec---ccCCCcceeEEEEecCCCeeEEEEeC-CCeEEEEcCC--Cce--eeeeccccccCeEEEEECCCCCEEEEEE-ec
Q psy13076 213 GE---ISGQSKPINSCDFKPSRPFRIITGSE-DNTIAVFEGP--PFK--FKMTKQEHSRFVQAVRYSPSGSHFASAG-FD 283 (423)
Q Consensus 213 ~~---~~~~~~~i~~~~~~~~~~~~~~s~s~-d~~i~~~~~~--~~~--~~~~~~~~~~~i~~l~~s~~g~~l~s~s-~d 283 (423)
.. ...+...+..++|+|++.+++++... ++.+.+|+.. ..+ ....... ...+..++|+|+|++|++++ .+
T Consensus 249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~ 327 (361)
T 3scy_A 249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDT 327 (361)
T ss_dssp EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTT
T ss_pred EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCC
Confidence 22 22333456799999999985565555 6899999864 222 2222222 44678899999999988887 57
Q ss_pred CeEEEE--ECCCccceecccccccCCCeEEEEEC
Q psy13076 284 GKVFLY--DGASADLVSELGNPAHKGGVYAVAWK 315 (423)
Q Consensus 284 g~i~vw--d~~~~~~~~~~~~~~~~~~i~~l~~~ 315 (423)
+.|.+| |..+++.... ....+...+.|++|.
T Consensus 328 ~~v~v~~~d~~~g~~~~~-~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 328 NVIQIFERDQATGLLTDI-KKDIKVDKPVCLKFV 360 (361)
T ss_dssp TEEEEEEECTTTCCEEEC-SCCEECSSEEEEEEE
T ss_pred CCEEEEEEECCCCcEeec-ceeeeCCCCeEEEEc
Confidence 889996 5556654432 222345578888885
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=1.3e-19 Score=171.35 Aligned_cols=249 Identities=16% Similarity=0.192 Sum_probs=156.9
Q ss_pred eeeEEEEeCCEEEEEeccceEEEEeccCCC---------Ccee-----ecccccCceeEEEEeCCCCeEE----EecCCC
Q psy13076 8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPS---------TPIR-----VIKGHNKPITALALSPDRGTVF----TGSHDG 69 (423)
Q Consensus 8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~---------~~~~-----~~~gh~~~V~~l~~~~~~~~l~----sg~~D~ 69 (423)
..+++.++++++++++.|| |++|+...-. .... ....|.++|.+++|+|++++|+ +|+.|+
T Consensus 40 n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~ 118 (434)
T 2oit_A 40 SLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGS 118 (434)
T ss_dssp BCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEE
T ss_pred cEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCc
Confidence 4678888999999999998 8888753100 0010 1123567899999999999999 899999
Q ss_pred ceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCC-CCEEEE
Q psy13076 70 FITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS-GFYIAS 148 (423)
Q Consensus 70 ~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s 148 (423)
+|++||+++.... ....... -.....+.+|...|.+++|+|+ +.++++
T Consensus 119 ~v~iwd~~~~~~~----~~~~~~~---------------------------~~~~~~~~~h~~~V~~v~~~p~~~~~las 167 (434)
T 2oit_A 119 IIAFFDVRTFSNE----AKQQKRP---------------------------FAYHKLLKDAGGMVIDMKWNPTVPSMVAV 167 (434)
T ss_dssp EEEEEEHHHHHCT----TCSSCCC---------------------------SEEEECCCSGGGSEEEEEECSSCTTEEEE
T ss_pred eEEEEEccccccC----CcCCcce---------------------------eeeeeccCCCCCceEEEEECCCCCCEEEE
Confidence 9999998753100 0000000 0012345689999999999997 899999
Q ss_pred EccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEe
Q psy13076 149 GDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFK 228 (423)
Q Consensus 149 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 228 (423)
++.|++|++||+++...... ...+...|.+++|+|+|++
T Consensus 168 ~s~Dg~v~iwD~~~~~~~~~--~~~~~~~v~~v~wspdg~~--------------------------------------- 206 (434)
T 2oit_A 168 CLADGSIAVLQVTETVKVCA--TLPSTVAVTSVCWSPKGKQ--------------------------------------- 206 (434)
T ss_dssp EETTSCEEEEEESSSEEEEE--EECGGGCEEEEEECTTSSC---------------------------------------
T ss_pred EECCCeEEEEEcCCCcceee--ccCCCCceeEEEEcCCCCE---------------------------------------
Confidence 99999999999987643221 1223345566666665543
Q ss_pred cCCCeeEEEEeCCCeEEEEcCCCceeeeecc-------ccccCeEEEEECCCCCEEEEEE-ecC------eEEEEECCCc
Q psy13076 229 PSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ-------EHSRFVQAVRYSPSGSHFASAG-FDG------KVFLYDGASA 294 (423)
Q Consensus 229 ~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~-------~~~~~i~~l~~s~~g~~l~s~s-~dg------~i~vwd~~~~ 294 (423)
+++++.|+.|++|+.+ ........ .|...+.+++|++++.++++.+ .|| .+++|++...
T Consensus 207 ------lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 207 ------LAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp ------EEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ------EEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 6677888899999876 22222222 2234789999999988775533 443 3889998754
Q ss_pred cc-----eeccccc-----ccCCCeEEEEECCCCCeEEEEeC-CCcEEEEecC
Q psy13076 295 DL-----VSELGNP-----AHKGGVYAVAWKPDGTQLLTASG-DKTCKLWDIE 336 (423)
Q Consensus 295 ~~-----~~~~~~~-----~~~~~i~~l~~~~~~~~l~s~s~-d~~i~iwd~~ 336 (423)
+. ...+... .....-.-+..-++.+++++++. ...|.+....
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 280 EEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp TTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred CCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence 21 1111111 11122223333466666665544 5557777643
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.85 E-value=3.7e-19 Score=163.24 Aligned_cols=281 Identities=12% Similarity=0.079 Sum_probs=180.7
Q ss_pred eEEEEeCCEEEEEeccceEEEEeccCCCCceeeccccc-CceeEEEEeCCCCeE-EEecCCCceEEeecCCcceeecccC
Q psy13076 10 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHN-KPITALALSPDRGTV-FTGSHDGFITRWNAKTEYIFATLPR 87 (423)
Q Consensus 10 ~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~-~~V~~l~~~~~~~~l-~sg~~D~~i~vW~~~~~~~~~~~~~ 87 (423)
+++..++.++++++.++.|++||+.+ .+....+..+. ..+..++|+|+++++ +++..++.|.+||.++++....+..
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVAS-DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTT-TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCC-CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45556788999999999999999976 44555665443 257899999999854 5677899999999998877655532
Q ss_pred CC-----CCCceEEeeCCCCCeEEEec-------------CCeEEEEecCCCcccc---cccCCcceEEEEEECCCCCEE
Q psy13076 88 TQ-----RGQPIVLGGDPKGKNFLYTN-------------GNSVIIRNIENPAISD---IYTEHSCAVNVAKYSPSGFYI 146 (423)
Q Consensus 88 ~~-----~~~~~~~~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~---~~~~h~~~i~~~~~sp~~~~l 146 (423)
.. ...+..+.++|+|+.+++.. ...+.+|++++++... .+. +...+.+++|+|+|+ +
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-L 161 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-E
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-E
Confidence 21 11134567889998877765 4789999998754433 233 334578899999999 5
Q ss_pred EEEccCCcEEEEEcCCCceeEEeeecCCCC----------------------CeeEEEECCCCCeEEEEEcCCceeeEE-
Q psy13076 147 ASGDISGKVRIWDTVNKEHILKNEFHPIGG----------------------PIKDIAWSPDNQRMVVVGEGRERFGHV- 203 (423)
Q Consensus 147 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~----------------------~v~~v~~s~~~~~~~~~~~~~~~~~~~- 203 (423)
+.++. .|.+||..+++............ ....+++++++........ .....+
T Consensus 162 ~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~ 237 (349)
T 1jmx_B 162 YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD--LLYGYLS 237 (349)
T ss_dssp EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE--EEEEEEE
T ss_pred EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccc--cceeEEE
Confidence 55543 49999998776544322211000 2234566655422110000 000011
Q ss_pred EeecCCc-ceecccCCCcceeEEEEec-CCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEE
Q psy13076 204 FMSETGT-SVGEISGQSKPINSCDFKP-SRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG 281 (423)
Q Consensus 204 ~~~~~~~-~~~~~~~~~~~i~~~~~~~-~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s 281 (423)
+...+++ ....+......+..+.++| ++.+ ++++ ++.|.+||....+....... ...+..++|+|+|++|++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~-l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~ 313 (349)
T 1jmx_B 238 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ-IYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGG 313 (349)
T ss_dssp EETTTCCEEEEEEEECSSCEEEEEECSSCTTE-EEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEES
T ss_pred EeccCCcEEecccccCCCcceeeEecCCCCCE-EEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEec
Confidence 1111111 1111222344677889999 8876 4444 88999999877665444432 23467899999999888888
Q ss_pred ecCeEEEEECCCccceeccc
Q psy13076 282 FDGKVFLYDGASADLVSELG 301 (423)
Q Consensus 282 ~dg~i~vwd~~~~~~~~~~~ 301 (423)
.++.|.+||..+++.+..+.
T Consensus 314 ~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 314 TFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp BSSEEEEEETTTTEEEEEEE
T ss_pred CCCeEEEEeccccceeeeee
Confidence 89999999999888776654
No 161
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.85 E-value=7.3e-18 Score=155.71 Aligned_cols=266 Identities=14% Similarity=0.150 Sum_probs=170.2
Q ss_pred cceEEEEEECCCCCEEEEEccC----CcEEEEEcCCC--ceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEE
Q psy13076 131 SCAVNVAKYSPSGFYIASGDIS----GKVRIWDTVNK--EHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVF 204 (423)
Q Consensus 131 ~~~i~~~~~sp~~~~l~s~~~d----~~i~vwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~ 204 (423)
...+..++|+|+|++|++++.+ +.|.+|++... +................+++ +++.++++..... ...+|
T Consensus 49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~-~v~~~ 125 (361)
T 3scy_A 49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGG-SITVF 125 (361)
T ss_dssp CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTT-EEEEE
T ss_pred CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCC-EEEEE
Confidence 3455678999999999998886 79999998653 32222223323345667777 8888887765443 34556
Q ss_pred eecCCcceeccc--------------CCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce-------e------eee
Q psy13076 205 MSETGTSVGEIS--------------GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK-------F------KMT 257 (423)
Q Consensus 205 ~~~~~~~~~~~~--------------~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~-------~------~~~ 257 (423)
.......+..+. .+...+.+++|+|++.+++++...++.+.+|+..... + ...
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 554332222111 1122357899999999867777778999999754221 1 111
Q ss_pred ccccccCeEEEEECCCCCEEEEEE-ecCeEEEEECCCccc--eeccc-ccccCCCeEEEEECCCCCeEEEEeC--CCcEE
Q psy13076 258 KQEHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASADL--VSELG-NPAHKGGVYAVAWKPDGTQLLTASG--DKTCK 331 (423)
Q Consensus 258 ~~~~~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~--~~~~~-~~~~~~~i~~l~~~~~~~~l~s~s~--d~~i~ 331 (423)
.......+..++|+|+|+++++++ .++.|.+|+..+++. +..+. ...+.....+++|+|+|++|+++.. +++|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 222344578899999999887777 589999999886643 22221 1223345789999999998866655 48999
Q ss_pred EEecC--Ccc--eeeeeeeCceeEeeEEEEEecCcEEEEEe-CCCcEEEEecCCCCCceEEe--ccCCCceeEEEec
Q psy13076 332 LWDIE--TKS--AVSEFLMGNQVEDQQVSCLWQGDYLLTVS-LSGFISYLDVNNPSTPIRVI--KGHNKPITALALS 401 (423)
Q Consensus 332 iwd~~--~~~--~i~~~~~~~~~~~~~~~~~~~g~~l~~~~-~~~~i~~~~~~~~~~~~~~~--~~h~~~v~~i~~s 401 (423)
+|++. +++ .+..+.. ......+.+.++|++|++++ .++.+.+|.+......+... ..+...+.|++|.
T Consensus 286 v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLT--GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEECTTTCCEEEEEEEEC--SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEcCCCCcEEEeeEecC--CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 99995 344 2222222 12234566778999988877 67889887654322223332 2345678899886
No 162
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.85 E-value=3.5e-19 Score=166.10 Aligned_cols=312 Identities=11% Similarity=0.035 Sum_probs=182.5
Q ss_pred EEeccCCCCceeecccccCceeE-----EEEeCCCCeEEEecC-CCc--eEEeecCCcceeecccCCCCCCceEEeeCCC
Q psy13076 30 YLDVNNPSTPIRVIKGHNKPITA-----LALSPDRGTVFTGSH-DGF--ITRWNAKTEYIFATLPRTQRGQPIVLGGDPK 101 (423)
Q Consensus 30 ~~d~~~~~~~~~~~~gh~~~V~~-----l~~~~~~~~l~sg~~-D~~--i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (423)
++|..+ ...+..+..|...+.. .+|+|||++|+.++. |+. |.+||+++++....
T Consensus 14 ~~~~~~-g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l----------------- 75 (388)
T 3pe7_A 14 YQDAST-GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL----------------- 75 (388)
T ss_dssp EECTTT-CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC-----------------
T ss_pred EecCCC-CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe-----------------
Confidence 345544 4456677777766665 889999998888877 664 67777776544321
Q ss_pred CCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEE
Q psy13076 102 GKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDI 181 (423)
Q Consensus 102 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v 181 (423)
..+|...+....|+|||++|+.++.++.|.+||+.+++.......+ ...+...
T Consensus 76 -------------------------t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~--~~~~~~~ 128 (388)
T 3pe7_A 76 -------------------------TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVP--AEWVGYG 128 (388)
T ss_dssp -------------------------CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC--TTEEEEE
T ss_pred -------------------------eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeech--hhccccc
Confidence 1223333334579999999999999999999999887654333322 2333333
Q ss_pred --EECCCCCeEEEEEc--------------------CCceeeEEEeecCCcceecccCCCcceeEEEEec-CCCeeEEEE
Q psy13076 182 --AWSPDNQRMVVVGE--------------------GRERFGHVFMSETGTSVGEISGQSKPINSCDFKP-SRPFRIITG 238 (423)
Q Consensus 182 --~~s~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~s~ 238 (423)
.++|+++.++.... .......+++..++. ...+..+...+..+.|+| ++..++.+.
T Consensus 129 ~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-~~~l~~~~~~~~~~~~sp~dg~~l~~~~ 207 (388)
T 3pe7_A 129 TWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE-STVILQENQWLGHPIYRPYDDSTVAFCH 207 (388)
T ss_dssp EEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC-EEEEEEESSCEEEEEEETTEEEEEEEEE
T ss_pred ceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc-eEEeecCCccccccEECCCCCCEEEEEE
Confidence 34899998875431 111223344444443 334444555678899999 876533333
Q ss_pred eC-----CCeEEEEcCCCceeeeeccccc-cCeEEEEECCCCCEEEEEEec-C----eEEEEECCCccceecccccccCC
Q psy13076 239 SE-----DNTIAVFEGPPFKFKMTKQEHS-RFVQAVRYSPSGSHFASAGFD-G----KVFLYDGASADLVSELGNPAHKG 307 (423)
Q Consensus 239 s~-----d~~i~~~~~~~~~~~~~~~~~~-~~i~~l~~s~~g~~l~s~s~d-g----~i~vwd~~~~~~~~~~~~~~~~~ 307 (423)
.. ...|.+++.............. ..+..++|+|||+.|+..+.+ + .|++||+.+++.........+..
T Consensus 208 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~ 287 (388)
T 3pe7_A 208 EGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSH 287 (388)
T ss_dssp CSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEE
T ss_pred ecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCcee
Confidence 22 3367788754433222222221 357788999999987665543 2 39999998876422111111100
Q ss_pred C---eEEEEECCCCCeEEEE---------eCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEE
Q psy13076 308 G---VYAVAWKPDGTQLLTA---------SGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISY 375 (423)
Q Consensus 308 ~---i~~l~~~~~~~~l~s~---------s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~ 375 (423)
. ...++|+|||+.|+.. ..+..|.+||+.+++.. .+....
T Consensus 288 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~--------------------------- 339 (388)
T 3pe7_A 288 LMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHD--------------------------- 339 (388)
T ss_dssp EEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE-EEEECC---------------------------
T ss_pred eeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-Eecccc---------------------------
Confidence 0 1123689999887754 34567888888765421 110000
Q ss_pred EecCCCCCceEEeccCCCceeEEEecCCCCeEEEec-CCCcEEEeeC
Q psy13076 376 LDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS-HDGFITRWNA 421 (423)
Q Consensus 376 ~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s-~D~~i~~W~~ 421 (423)
.............+.+++|+||++.|+.++ .++...+|.+
T Consensus 340 ------~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 340 ------TSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp ------CCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ------CcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 000000001122477889999999887655 5788888754
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.84 E-value=4.7e-18 Score=171.99 Aligned_cols=330 Identities=10% Similarity=0.082 Sum_probs=206.7
Q ss_pred ceeeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCc-----eeEEEEeCCCCeEEEecCC---------CceE
Q psy13076 7 DQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKP-----ITALALSPDRGTVFTGSHD---------GFIT 72 (423)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~-----V~~l~~~~~~~~l~sg~~D---------~~i~ 72 (423)
.+.++.++||.+++++ ||.|++||+.++ ++...+.+|... ...++|||||++|+.++.+ +.+.
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYG-NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTC-CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCC-ceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 4566666799999885 999999999864 445577777643 2347899999999999887 4556
Q ss_pred EeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCccccc-ccCCcceE-----------------
Q psy13076 73 RWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDI-YTEHSCAV----------------- 134 (423)
Q Consensus 73 vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~h~~~i----------------- 134 (423)
+||++++++.. +. ...+......++|+|+.+++..++.+.+|++.++..... ..++...+
T Consensus 96 ~~d~~~~~~~~-l~-~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~ 173 (740)
T 4a5s_A 96 IYDLNKRQLIT-EE-RIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY 173 (740)
T ss_dssp EEETTTTEECC-SS-CCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred EEECCCCcEEE-cc-cCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence 99999987643 22 123445678899999999999889999999988765543 22443322
Q ss_pred EEEEECCCCCEEEEEccCC------------------------------------cEEEEEcCC---CceeEEeeec---
Q psy13076 135 NVAKYSPSGFYIASGDISG------------------------------------KVRIWDTVN---KEHILKNEFH--- 172 (423)
Q Consensus 135 ~~~~~sp~~~~l~s~~~d~------------------------------------~i~vwd~~~---~~~~~~~~~~--- 172 (423)
..+.|||||++||..+.|. +|++||+.+ ++........
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~ 253 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA 253 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc
Confidence 3478999999999876432 477788877 5211111111
Q ss_pred ---CCCCCeeEEEECCCCCeEEEEEcCC--ceeeEEEeecCCc----c--eecc--cCCCccee-----EEEEecCCCee
Q psy13076 173 ---PIGGPIKDIAWSPDNQRMVVVGEGR--ERFGHVFMSETGT----S--VGEI--SGQSKPIN-----SCDFKPSRPFR 234 (423)
Q Consensus 173 ---~~~~~v~~v~~s~~~~~~~~~~~~~--~~~~~~~~~~~~~----~--~~~~--~~~~~~i~-----~~~~~~~~~~~ 234 (423)
.....+..++|+|||+.++...... .....+++.+++. + ...+ ..+...+. ...|+|++..+
T Consensus 254 ~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l 333 (740)
T 4a5s_A 254 SMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSF 333 (740)
T ss_dssp HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEE
T ss_pred cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEE
Confidence 1344578899999999666554332 2334556666665 1 1222 23443333 67899999875
Q ss_pred EEEEe-CCC--eEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEec-------CeEEEEECCCccceeccccc-
Q psy13076 235 IITGS-EDN--TIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD-------GKVFLYDGASADLVSELGNP- 303 (423)
Q Consensus 235 ~~s~s-~d~--~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~d-------g~i~vwd~~~~~~~~~~~~~- 303 (423)
++..+ .+| .|++|+........ +....-.+..+. .++++.++..+.. ..|+..++..+.....+...
T Consensus 334 ~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~ 411 (740)
T 4a5s_A 334 YKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCEL 411 (740)
T ss_dssp EEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTT
T ss_pred EEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeecccc
Confidence 52444 444 57777765443332 222233344432 2446655444432 24555555544332223211
Q ss_pred -ccCCCeEEEEECCCCCeEEEEeCC---CcEEEEecCCcceeee
Q psy13076 304 -AHKGGVYAVAWKPDGTQLLTASGD---KTCKLWDIETKSAVSE 343 (423)
Q Consensus 304 -~~~~~i~~l~~~~~~~~l~s~s~d---~~i~iwd~~~~~~i~~ 343 (423)
........+.|+|++++++..... ..+.+++..+++.+..
T Consensus 412 ~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~ 455 (740)
T 4a5s_A 412 NPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRV 455 (740)
T ss_dssp STTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEE
T ss_pred CCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEE
Confidence 123567899999999987655443 3678888877655443
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.83 E-value=2.5e-18 Score=159.10 Aligned_cols=255 Identities=14% Similarity=0.167 Sum_probs=160.4
Q ss_pred ceEEEEEECCCCCEEEEEccCCcEEEEEcC-CCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCc
Q psy13076 132 CAVNVAKYSPSGFYIASGDISGKVRIWDTV-NKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGT 210 (423)
Q Consensus 132 ~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (423)
..+..++|+|+|+++++++.+ .|.+|++. +++........ ..+....++|+|+|+.+++...+...
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~-~~g~~~~~~~spdg~~l~~~~~~~~~----------- 106 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP-IGGHPRANDADTNTRAIFLLAAKQPP----------- 106 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE-CCSSGGGGCTTSCCEEEEEEECSSTT-----------
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEee-cCCCCccEEECCCCCEEEEEEecCCc-----------
Confidence 356788999999999999888 99999986 55433221211 11234567888988863322111000
Q ss_pred ceecccCCCcceeEEEEecCCCeeEEEEe----CCCeEEEEcCC-Cceeeeecc----ccccCeEEEEECCCCCEEEEEE
Q psy13076 211 SVGEISGQSKPINSCDFKPSRPFRIITGS----EDNTIAVFEGP-PFKFKMTKQ----EHSRFVQAVRYSPSGSHFASAG 281 (423)
Q Consensus 211 ~~~~~~~~~~~i~~~~~~~~~~~~~~s~s----~d~~i~~~~~~-~~~~~~~~~----~~~~~i~~l~~s~~g~~l~s~s 281 (423)
+ ...+. .++.+.+|+.. ..+...... .+...+..++|+|+|++++++.
T Consensus 107 ----------------------~-~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 163 (365)
T 1jof_A 107 ----------------------Y-AVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD 163 (365)
T ss_dssp ----------------------C-CEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred ----------------------c-eeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence 0 00011 35556666543 122211111 2345688999999999888776
Q ss_pred e-cCeEEEEECC-Cccce--ecccccccCCCeEEEEECCCCCeEEEEeC-CCcEEEEecC--Ccceee---eeeeC-ce-
Q psy13076 282 F-DGKVFLYDGA-SADLV--SELGNPAHKGGVYAVAWKPDGTQLLTASG-DKTCKLWDIE--TKSAVS---EFLMG-NQ- 349 (423)
Q Consensus 282 ~-dg~i~vwd~~-~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~s~s~-d~~i~iwd~~--~~~~i~---~~~~~-~~- 349 (423)
. ++.|++|+.. +++.. ..+....|...+..++|+|+|++|++++. +++|.+|++. +++... ..... ..
T Consensus 164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 243 (365)
T 1jof_A 164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI 243 (365)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence 4 6799999998 66542 22221123456899999999999887765 7899999875 454321 11110 00
Q ss_pred ---e-------EeeEEE-EEecCcEEEEEeCC-C-----cEEEEecCCCCCceE---EeccCCCceeEEEecC---CCCe
Q psy13076 350 ---V-------EDQQVS-CLWQGDYLLTVSLS-G-----FISYLDVNNPSTPIR---VIKGHNKPITALALSP---DRGT 406 (423)
Q Consensus 350 ---~-------~~~~~~-~~~~g~~l~~~~~~-~-----~i~~~~~~~~~~~~~---~~~~h~~~v~~i~~sp---~~~~ 406 (423)
. ....+. ++++|++|+++..+ + .|.+|++........ ....+...+..++|+| |+++
T Consensus 244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~ 323 (365)
T 1jof_A 244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEW 323 (365)
T ss_dssp CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTE
T ss_pred CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCE
Confidence 1 244566 77899988766533 2 799999863233222 1334566688999999 8999
Q ss_pred EEEecC-CCcEEEeeCC
Q psy13076 407 VFTGSH-DGFITRWNAK 422 (423)
Q Consensus 407 l~s~s~-D~~i~~W~~~ 422 (423)
|++++. ++.|++|+.+
T Consensus 324 l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 324 MAITDDQEGWLEIYRWK 340 (365)
T ss_dssp EEEECSSSCEEEEEEEE
T ss_pred EEEEEcCCCeEEEEEEc
Confidence 998876 4899999864
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.82 E-value=1.5e-18 Score=161.81 Aligned_cols=277 Identities=13% Similarity=0.099 Sum_probs=173.6
Q ss_pred eEEEEeCCEEEEEec-cc--eEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeeccc
Q psy13076 10 VSCLWQGDYLLTVSL-SG--FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLP 86 (423)
Q Consensus 10 ~~~~~~~~~~~~~~~-dg--~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~ 86 (423)
.++++||++||.++. +| .|++||+.+ .++.....+|...+..++|+|+++.|+.++.++.|++||+++++......
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~-g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~ 119 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNT-QVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ 119 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTT-CEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCC-CceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee
Confidence 678889999999988 67 488888865 45555667777777778999999999999999999999998875432211
Q ss_pred CCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEE--EEECCCCCEEEE----------------
Q psy13076 87 RTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNV--AKYSPSGFYIAS---------------- 148 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~--~~~sp~~~~l~s---------------- 148 (423)
. +...+.. ..++|++++++.
T Consensus 120 ~------------------------------------------~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~ 157 (388)
T 3pe7_A 120 V------------------------------------------PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKK 157 (388)
T ss_dssp C------------------------------------------CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHH
T ss_pred c------------------------------------------hhhcccccceeECCCCCeeccccccCcccccccccch
Confidence 1 0111111 122455555442
Q ss_pred ------EccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECC-CCCeEEEEEcCCc--eeeEEEeec-CCcceecccCC
Q psy13076 149 ------GDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP-DNQRMVVVGEGRE--RFGHVFMSE-TGTSVGEISGQ 218 (423)
Q Consensus 149 ------~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~ 218 (423)
.+.+..|.+||+.+++..... .....+..++|+| ||+.++.+..... ....++..+ .+.....+..+
T Consensus 158 ~~~~~~~~~~~~l~~~d~~~g~~~~l~---~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 234 (388)
T 3pe7_A 158 FHEFYFTKPCCRLMRVDLKTGESTVIL---QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTH 234 (388)
T ss_dssp HHHHGGGCCCEEEEEEETTTCCEEEEE---EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCC
T ss_pred hhhhhccCCcceEEEEECCCCceEEee---cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeC
Confidence 224467999998877543221 2235678999999 9999888775421 112333332 23333444433
Q ss_pred C--cceeEEEEecCCCeeEEEEeCCC----eEEEEcCCCceeee--eccccccC---eEEEEECCCCCEEEEE-------
Q psy13076 219 S--KPINSCDFKPSRPFRIITGSEDN----TIAVFEGPPFKFKM--TKQEHSRF---VQAVRYSPSGSHFASA------- 280 (423)
Q Consensus 219 ~--~~i~~~~~~~~~~~~~~s~s~d~----~i~~~~~~~~~~~~--~~~~~~~~---i~~l~~s~~g~~l~s~------- 280 (423)
. ..+....|+|++..++..+..++ .|++|+....+... ....+... ...++|+|||+.|+..
T Consensus 235 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 314 (388)
T 3pe7_A 235 AEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGY 314 (388)
T ss_dssp CTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC----------
T ss_pred CCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecccc
Confidence 3 35778899999986544444322 39999976554322 11111000 1123799999987754
Q ss_pred --EecCeEEEEECCCccceecccccccCC-----------CeEEEEECCCCCeEEEEe-CCCcEEEEec
Q psy13076 281 --GFDGKVFLYDGASADLVSELGNPAHKG-----------GVYAVAWKPDGTQLLTAS-GDKTCKLWDI 335 (423)
Q Consensus 281 --s~dg~i~vwd~~~~~~~~~~~~~~~~~-----------~i~~l~~~~~~~~l~s~s-~d~~i~iwd~ 335 (423)
..+..|++||..+++. ..+. .+.. .+..++|+|||++|+..+ .++...||.+
T Consensus 315 ~~~~~~~i~~~d~~~~~~-~~l~--~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 315 KIENDPFLYVFNMKNGTQ-HRVA--RHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp --CCCCEEEEEETTTTEE-EEEE--ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ccCCCCEEEEEeccCCce-EEec--cccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 4456899999988764 3332 2333 467889999999887665 4677777754
No 166
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.80 E-value=3.9e-18 Score=161.19 Aligned_cols=205 Identities=19% Similarity=0.180 Sum_probs=151.2
Q ss_pred ceEEEEEECCCCCEEEEEccCCcEEEEEcCCC----------ceeEE---eeecCCCCCeeEEEECCCCCeEEEE--EcC
Q psy13076 132 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNK----------EHILK---NEFHPIGGPIKDIAWSPDNQRMVVV--GEG 196 (423)
Q Consensus 132 ~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~----------~~~~~---~~~~~~~~~v~~v~~s~~~~~~~~~--~~~ 196 (423)
..++.+++++++.++++++.|+ +++|+.... ..... .....+..+|.+++|+|++++++++ +.+
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 3567889999999999999887 999875311 00000 0112235679999999999998864 345
Q ss_pred CceeeEEEeecCC--------cc---eecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCe
Q psy13076 197 RERFGHVFMSETG--------TS---VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFV 265 (423)
Q Consensus 197 ~~~~~~~~~~~~~--------~~---~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i 265 (423)
.+...++|+.... +. +..+.+|...|.+++|+|+....+++++.|+++++||.+..........|...|
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v 195 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAV 195 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCE
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCce
Confidence 5666778876543 11 344566888999999999865669999999999999987765555556688899
Q ss_pred EEEEECCCCCEEEEEEecCeEEEEECCCccceeccccc-----ccCCCeEEEEECCCCCeEEEE-eCCC------cEEEE
Q psy13076 266 QAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP-----AHKGGVYAVAWKPDGTQLLTA-SGDK------TCKLW 333 (423)
Q Consensus 266 ~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-----~~~~~i~~l~~~~~~~~l~s~-s~d~------~i~iw 333 (423)
.+++|+|+|++|++|+.||.|++||.+ ++....+... .|...+.+++|++++.++++. ..|| .+++|
T Consensus 196 ~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~ 274 (434)
T 2oit_A 196 TSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMA 274 (434)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEE
T ss_pred eEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEE
Confidence 999999999999999999999999987 4433333211 233478999999998887654 3443 38999
Q ss_pred ecCCc
Q psy13076 334 DIETK 338 (423)
Q Consensus 334 d~~~~ 338 (423)
++...
T Consensus 275 ~l~~~ 279 (434)
T 2oit_A 275 LLPKK 279 (434)
T ss_dssp ECCCT
T ss_pred EeccC
Confidence 99765
No 167
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.79 E-value=6e-18 Score=158.02 Aligned_cols=313 Identities=11% Similarity=0.089 Sum_probs=187.2
Q ss_pred EEeccCCCCceeecccccC-----ceeEEEEeCCCCeEEEecC---CCceEEeecCCcceeecccCCCCCCceEEeeCCC
Q psy13076 30 YLDVNNPSTPIRVIKGHNK-----PITALALSPDRGTVFTGSH---DGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPK 101 (423)
Q Consensus 30 ~~d~~~~~~~~~~~~gh~~-----~V~~l~~~~~~~~l~sg~~---D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (423)
++|..++ ..+..+..+.. .+..++|+|+|++|+..+. +..|.+||.++++.....
T Consensus 14 ~~d~~~g-~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~---------------- 76 (396)
T 3c5m_A 14 FVDSDTQ-VKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT---------------- 76 (396)
T ss_dssp EECTTTC-CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECC----------------
T ss_pred eecCCCC-cceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEee----------------
Confidence 3455443 33445544433 3788899999998776543 236777787765432211
Q ss_pred CCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEE
Q psy13076 102 GKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDI 181 (423)
Q Consensus 102 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v 181 (423)
.++........|+|||++|+..+.++.|.+||+.+++........ ..
T Consensus 77 --------------------------~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~--~~----- 123 (396)
T 3c5m_A 77 --------------------------EGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVD--EE----- 123 (396)
T ss_dssp --------------------------CSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC--TT-----
T ss_pred --------------------------cCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecc--cc-----
Confidence 011111122568999999999999999999998876543222211 11
Q ss_pred EECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEE----eCCCeEEEEcCCCceeeee
Q psy13076 182 AWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITG----SEDNTIAVFEGPPFKFKMT 257 (423)
Q Consensus 182 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~----s~d~~i~~~~~~~~~~~~~ 257 (423)
|+|+++.++..... ....++ ...+.++|++..+++.. ..+..|++|+....+....
T Consensus 124 -~~~~g~~l~~~~~~--~~~~~~-----------------~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~ 183 (396)
T 3c5m_A 124 -WKGYGTWVANSDCT--KLVGIE-----------------ILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI 183 (396)
T ss_dssp -EEEEEEEEECTTSS--EEEEEE-----------------EEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE
T ss_pred -cCCCCCEEEeccCC--cccccc-----------------ccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEee
Confidence 55565554432211 000010 11234566665433222 4566788898765443322
Q ss_pred ccccccCeEEEEECC-CCCEEEEEEec------CeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCC---
Q psy13076 258 KQEHSRFVQAVRYSP-SGSHFASAGFD------GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD--- 327 (423)
Q Consensus 258 ~~~~~~~i~~l~~s~-~g~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d--- 327 (423)
. .+...+..+.|+| +|+.|+..+.+ ..|.+||...++.. .+........+..++|+|+|++|+.++.+
T Consensus 184 ~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 261 (396)
T 3c5m_A 184 H-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQ 261 (396)
T ss_dssp E-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTT
T ss_pred c-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCC
Confidence 2 4556688999999 78877766643 36888887655432 23211112347789999999988777654
Q ss_pred --CcEEEEecCCcceeeeeeeCceeEeeEEEEEe-cCcEEEEEe----------------CCCcEEEEecCCCCCceEEe
Q psy13076 328 --KTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW-QGDYLLTVS----------------LSGFISYLDVNNPSTPIRVI 388 (423)
Q Consensus 328 --~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~-~g~~l~~~~----------------~~~~i~~~~~~~~~~~~~~~ 388 (423)
+.|.+||+.+++........ .. . ...++ +|+.++... .+..+++||..+... ..+
T Consensus 262 ~~~~l~~~d~~~g~~~~l~~~~-~~--~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l 335 (396)
T 3c5m_A 262 TDRVIYKANPETLENEEVMVMP-PC--S-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA--QKL 335 (396)
T ss_dssp CCEEEEEECTTTCCEEEEEECC-SE--E-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC--CEE
T ss_pred ccceEEEEECCCCCeEEeeeCC-CC--C-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce--EEc
Confidence 44999999887643322111 11 1 45567 898877654 246799999876543 344
Q ss_pred ccCCC-----------ceeEEEecCCCCeEEEecC-CCcEEEee
Q psy13076 389 KGHNK-----------PITALALSPDRGTVFTGSH-DGFITRWN 420 (423)
Q Consensus 389 ~~h~~-----------~v~~i~~sp~~~~l~s~s~-D~~i~~W~ 420 (423)
..|.. .+..++|+||++.|+.++. ++...+|.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~ 379 (396)
T 3c5m_A 336 CKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYI 379 (396)
T ss_dssp EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred cCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEE
Confidence 45544 2677899999999876654 56666664
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.79 E-value=2.7e-16 Score=144.97 Aligned_cols=287 Identities=15% Similarity=0.107 Sum_probs=195.4
Q ss_pred CCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEcc----------CCcEEEEEcCCCceeEEeeecC----CC
Q psy13076 110 GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI----------SGKVRIWDTVNKEHILKNEFHP----IG 175 (423)
Q Consensus 110 ~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~----------d~~i~vwd~~~~~~~~~~~~~~----~~ 175 (423)
++.+.++|.++++....+..+..+ .++|+|||+++++++. +++|.+||..+.+......... ..
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g 107 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGL 107 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBC
T ss_pred cCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccC
Confidence 357889999888887777766655 8999999999998863 6789999998766554333221 12
Q ss_pred CCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceec-ccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC-ce
Q psy13076 176 GPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE-ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP-FK 253 (423)
Q Consensus 176 ~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~-~~ 253 (423)
.....++|+|||++++++.........+++.++++.+.. +..... ..+.+.|.+...+++.+.|+.+..++... .+
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~--~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~ 185 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC--WSVIPQPNRPRSFMTICGDGGLLTINLGEDGK 185 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE--EEEEECTTSSSEEEEEETTSSEEEEEECTTSS
T ss_pred CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc--ceeEEcCCCCeeEEEECCCCcEEEEEECCCCc
Confidence 345679999999999988755445567777777766655 443221 22456676656678888899888886532 22
Q ss_pred eee------eccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccce--eccccc----ccC----CCeEEEEECCC
Q psy13076 254 FKM------TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLV--SELGNP----AHK----GGVYAVAWKPD 317 (423)
Q Consensus 254 ~~~------~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~----~~~----~~i~~l~~~~~ 317 (423)
... .......+ ..+.++|++..++..+.++.|.++|....... ..+... .+. .....++|+|+
T Consensus 186 ~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d 264 (361)
T 2oiz_A 186 VASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA 264 (361)
T ss_dssp EEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT
T ss_pred EeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC
Confidence 220 11111111 12334577877777888999999998654321 111000 000 11123789999
Q ss_pred CCeEEEEeC-----------CCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCC-Cce
Q psy13076 318 GTQLLTASG-----------DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPS-TPI 385 (423)
Q Consensus 318 ~~~l~s~s~-----------d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~-~~~ 385 (423)
++.+..+.. ..+|.+||+.+++.+.++..+. ...+.+.++|++|+++.. +.|.+||..+.. +.+
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~---p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~ 340 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD---ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLL 340 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT---CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEE
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC---eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceee
Confidence 887776543 3489999999999988876655 566778889999888876 999999998852 334
Q ss_pred EEeccCCCceeEEEecCCCC
Q psy13076 386 RVIKGHNKPITALALSPDRG 405 (423)
Q Consensus 386 ~~~~~h~~~v~~i~~sp~~~ 405 (423)
+.+..+...-+.++++|+|+
T Consensus 341 ~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 341 RTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEETTSCSSEEEEEECCCSC
T ss_pred EEeccCCCCcEEEEecCCCC
Confidence 55567778889999999986
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.79 E-value=8.2e-17 Score=160.94 Aligned_cols=294 Identities=11% Similarity=-0.002 Sum_probs=178.9
Q ss_pred eecccccCceeEEEEeCCCCeEEEe--cCCCceEEeecCCcceeecccCCCCC-C---------ceEEeeCCCCCe-EEE
Q psy13076 41 RVIKGHNKPITALALSPDRGTVFTG--SHDGFITRWNAKTEYIFATLPRTQRG-Q---------PIVLGGDPKGKN-FLY 107 (423)
Q Consensus 41 ~~~~gh~~~V~~l~~~~~~~~l~sg--~~D~~i~vW~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~-~~~ 107 (423)
..+.+|...|..++|+++.-.+++. +.|+..++|....+.....+...... . ...+..+|+|+. +++
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 3577899999999999887667777 77899999985332222222221111 1 122333599988 777
Q ss_pred ecC--CeEEEEecC--C-CcccccccC-----CcceEEEEEECCCCCEEEEEccC----------CcEEEEEcCC-----
Q psy13076 108 TNG--NSVIIRNIE--N-PAISDIYTE-----HSCAVNVAKYSPSGFYIASGDIS----------GKVRIWDTVN----- 162 (423)
Q Consensus 108 ~~~--~~~~i~~~~--~-~~~~~~~~~-----h~~~i~~~~~sp~~~~l~s~~~d----------~~i~vwd~~~----- 162 (423)
... ..+.+++++ + +. ...+.. |...+..++|+|||++|++++.+ .+|.+||+.+
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 175 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD 175 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred EECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence 764 345555554 2 33 334444 77889999999999999998877 5899999877
Q ss_pred -CceeEEeeec-CCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeC
Q psy13076 163 -KEHILKNEFH-PIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSE 240 (423)
Q Consensus 163 -~~~~~~~~~~-~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~ 240 (423)
++... +. .....+..++|||||+.++.++..... .++ .
T Consensus 176 ~~~~~~---l~~~~~~~~~~~~~SpDG~~la~~~~~~~~-------------------------------~~~------~ 215 (662)
T 3azo_A 176 RSAVRE---LSDDAHRFVTGPRLSPDGRQAVWLAWDHPR-------------------------------MPW------E 215 (662)
T ss_dssp GGGSEE---SSCSCSSEECCCEECTTSSEEEEEEECTTC-------------------------------CTT------T
T ss_pred CCceeE---EEecCCCcccCceECCCCCEEEEEECCCCC-------------------------------CCC------C
Confidence 44321 11 223456778899999988765432110 000 0
Q ss_pred CCeEEEEcCC-Cc---eeeeeccccccCeEEEEECCCCCEEEEEEecC--eEEEEECCCccceecccccccCCC------
Q psy13076 241 DNTIAVFEGP-PF---KFKMTKQEHSRFVQAVRYSPSGSHFASAGFDG--KVFLYDGASADLVSELGNPAHKGG------ 308 (423)
Q Consensus 241 d~~i~~~~~~-~~---~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~------ 308 (423)
...|++|+.. .. ........+...+..++|+|||+++++++.++ .|++||..+++...... .+...
T Consensus 216 ~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~--~~~~~~~p~w~ 293 (662)
T 3azo_A 216 GTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR--REEEFAGPLWT 293 (662)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC--CSSBSSCCCCS
T ss_pred CcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc--ccccccCcccc
Confidence 1235555544 22 22222233456688999999999888888888 67777766665432221 12111
Q ss_pred --eEEEEECCCCCeEEEEeCCCcEEEE--ecCCcceeeeeeeCceeEeeEEEEEecCcEEE--EEeCCC--cEEEEecCC
Q psy13076 309 --VYAVAWKPDGTQLLTASGDKTCKLW--DIETKSAVSEFLMGNQVEDQQVSCLWQGDYLL--TVSLSG--FISYLDVNN 380 (423)
Q Consensus 309 --i~~l~~~~~~~~l~s~s~d~~i~iw--d~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~--~~~~~~--~i~~~~~~~ 380 (423)
+..++|+|+++++++++. ++++|| |+.+++ +..+... ......+. .++++.++ +.+.+. .++.+|..+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~-~~~~~~~~-s~~~~~~~~~~~~~~~~~~i~~~d~~~ 369 (662)
T 3azo_A 294 PGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGP-WTEWAATL-TVSGTRAVGVAASPRTAYEVVELDTVT 369 (662)
T ss_dssp TTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSS-CCEEEEEE-EEETTEEEEEEEETTEEEEEEEEETTT
T ss_pred ccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCC-CCeEEEEE-ecCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 467899999999999998 999999 555554 3443222 11112221 45666544 334443 455566555
Q ss_pred C
Q psy13076 381 P 381 (423)
Q Consensus 381 ~ 381 (423)
.
T Consensus 370 g 370 (662)
T 3azo_A 370 G 370 (662)
T ss_dssp C
T ss_pred C
Confidence 3
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.77 E-value=5.5e-16 Score=142.95 Aligned_cols=292 Identities=12% Similarity=0.052 Sum_probs=192.5
Q ss_pred eCCEEEEEe------ccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEec----------CCCceEEeecCC
Q psy13076 15 QGDYLLTVS------LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS----------HDGFITRWNAKT 78 (423)
Q Consensus 15 ~~~~~~~~~------~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~----------~D~~i~vW~~~~ 78 (423)
|++++..+. .|+.|.+||..+ .+.+.++..+..+ .++|+|++++|++++ .|++|.+||..+
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t-~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTN-GKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTT-CCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCEEEEECCCCCccccCeEEEEECCC-CeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 677777654 478999999876 4566677777767 899999999998876 377899999998
Q ss_pred cceeecccCC-----CCCCceEEeeCCCCCeEEEec---CCeEEEEecCCCccccc-ccCCcceEEEEEECCCC-CEEEE
Q psy13076 79 EYIFATLPRT-----QRGQPIVLGGDPKGKNFLYTN---GNSVIIRNIENPAISDI-YTEHSCAVNVAKYSPSG-FYIAS 148 (423)
Q Consensus 79 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~-~~~h~~~i~~~~~sp~~-~~l~s 148 (423)
.+....+... ....+..+..+|+|+.++.++ ++.+.++++++.+.... +... ....+.+.|++ ..+++
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~ 168 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMT 168 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEE
T ss_pred CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEE
Confidence 8776665321 112345577899999887754 46899999998877665 4322 12335677865 67788
Q ss_pred EccCCcEEEEEcCC-CceeEEe----eecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcc--eeccc-----
Q psy13076 149 GDISGKVRIWDTVN-KEHILKN----EFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTS--VGEIS----- 216 (423)
Q Consensus 149 ~~~d~~i~vwd~~~-~~~~~~~----~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----- 216 (423)
.+.|+.+.+|+... ++..... .+.....+ ..+.++|++..++..+... ...+++...... .....
T Consensus 169 ~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~--~v~v~d~~~~~~~~~~~~~~~~~~ 245 (361)
T 2oiz_A 169 ICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYG--NVYSADFSGDEVKVDGPWSLLNDE 245 (361)
T ss_dssp EETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTS--EEEEEECSSSSCEEEEEEESCCHH
T ss_pred ECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCC--eEEEEEecCCCceecccccccCcc
Confidence 88999999999864 3322111 11111111 1223345665555544322 223333322110 00000
Q ss_pred ---CC--CcceeEEEEecCCCeeEEEEe----------CCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEE
Q psy13076 217 ---GQ--SKPINSCDFKPSRPFRIITGS----------EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG 281 (423)
Q Consensus 217 ---~~--~~~i~~~~~~~~~~~~~~s~s----------~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s 281 (423)
.. ......++++|++....++.. ..+.+.+||....+.......+. +..++|+|||++|++++
T Consensus 246 ~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n 323 (361)
T 2oiz_A 246 DKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLD 323 (361)
T ss_dssp HHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEEC
T ss_pred ccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeC
Confidence 00 011123688998877555544 13589999998888777666655 88999999999999888
Q ss_pred ecCeEEEEECCCc--cceecccccccCCCeEEEEECCCCC
Q psy13076 282 FDGKVFLYDGASA--DLVSELGNPAHKGGVYAVAWKPDGT 319 (423)
Q Consensus 282 ~dg~i~vwd~~~~--~~~~~~~~~~~~~~i~~l~~~~~~~ 319 (423)
. +.|.+||..++ +.+.++. .+......++++|+|+
T Consensus 324 ~-~~v~v~D~~t~~l~~~~~i~--~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 324 G-GNVNVYDISQPEPKLLRTIE--GAAEASLQVQFHPVGG 360 (361)
T ss_dssp S-SCEEEEECSSSSCEEEEEET--TSCSSEEEEEECCCSC
T ss_pred C-CeEEEEECCCCcceeeEEec--cCCCCcEEEEecCCCC
Confidence 6 99999999999 8777653 2445678999999986
No 171
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.77 E-value=3.4e-16 Score=142.62 Aligned_cols=280 Identities=13% Similarity=0.159 Sum_probs=172.1
Q ss_pred ccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccc
Q psy13076 46 HNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISD 125 (423)
Q Consensus 46 h~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 125 (423)
--+.|.+++++|+++++++...++.+++++.+....+.... .+ | ...+.+.+++.+++++..
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~---~~--------~-------~~~~~i~~~d~~~g~~~~ 83 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRG---LG--------P-------IEEDTILVIDPNNAEILQ 83 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGG---GC--------S-------CCSCCEEEECTTTCCEEE
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccc---cc--------c-------ccCCcEEEEECCCCeEEe
Confidence 35689999999999999999988877666554432211100 00 0 012345566666555544
Q ss_pred ccc-CCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCc-eeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEE
Q psy13076 126 IYT-EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE-HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHV 203 (423)
Q Consensus 126 ~~~-~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~ 203 (423)
.+. ++......++++|+|+++++...++.|++||..... .+.........+
T Consensus 84 ~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g--------------------------- 136 (329)
T 3fvz_A 84 SSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPG--------------------------- 136 (329)
T ss_dssp EECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCC---------------------------
T ss_pred ccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCC---------------------------
Confidence 433 455678899999999988888889999999975432 111110000000
Q ss_pred EeecCCcceecccCCCcceeEEEEecCCCeeEEEEe-CCCeEEEEcCCCceeeeecc----------ccccCeEEEEECC
Q psy13076 204 FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS-EDNTIAVFEGPPFKFKMTKQ----------EHSRFVQAVRYSP 272 (423)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s-~d~~i~~~~~~~~~~~~~~~----------~~~~~i~~l~~s~ 272 (423)
.-..+...+..++++|.+..++++.+ .++.|++|+.. ........ .+......++++|
T Consensus 137 ----------~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~ 205 (329)
T 3fvz_A 137 ----------SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVP 205 (329)
T ss_dssp ----------CSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEET
T ss_pred ----------CCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEEC
Confidence 00011123344444442112233333 35555555522 22221111 1223478899999
Q ss_pred C-CCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECC------CCCeEEEEeCCCcEEEEecCCcceeeeee
Q psy13076 273 S-GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP------DGTQLLTASGDKTCKLWDIETKSAVSEFL 345 (423)
Q Consensus 273 ~-g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~------~~~~l~s~s~d~~i~iwd~~~~~~i~~~~ 345 (423)
+ |.++++...++.|++|+..+++.+..+....+...+.+++|+| +|+..++...+.+|++||..+++.+..+.
T Consensus 206 ~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~ 285 (329)
T 3fvz_A 206 HLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK 285 (329)
T ss_dssp TTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC
T ss_pred CCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc
Confidence 9 6777777788999999998888877775555667789999999 33333333344578888877765443321
Q ss_pred eCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076 346 MGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 422 (423)
Q Consensus 346 ~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~ 422 (423)
...+|......|+++|++.++++...++.|++|+++
T Consensus 286 -----------------------------------------~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 286 -----------------------------------------PVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp -----------------------------------------CSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred -----------------------------------------CCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 012455668899999999888899999999999864
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.76 E-value=3.1e-15 Score=133.31 Aligned_cols=244 Identities=12% Similarity=0.110 Sum_probs=160.2
Q ss_pred ccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC-----CCCCceEEee-CCCCCeEEEec--CCeEEE
Q psy13076 44 KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT-----QRGQPIVLGG-DPKGKNFLYTN--GNSVII 115 (423)
Q Consensus 44 ~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~--~~~~~i 115 (423)
.+|.....++++++++.++++...++.|++||.+. .....+... ....+..+.. +++++.++... ...+.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 46777899999999999999989999999999874 333333211 1123445566 56777777663 578888
Q ss_pred EecCCCccccccc-CCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEE
Q psy13076 116 RNIENPAISDIYT-EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVG 194 (423)
Q Consensus 116 ~~~~~~~~~~~~~-~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~ 194 (423)
++. +++....+. .+...+..++++|+|+++++...++.|.+||.. ++.............+..++++|++..
T Consensus 105 ~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l----- 177 (286)
T 1q7f_A 105 YNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEI----- 177 (286)
T ss_dssp ECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEE-----
T ss_pred ECC-CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCE-----
Confidence 984 455444443 345678999999999988888888999999954 232221111111123455555555442
Q ss_pred cCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecc--ccccCeEEEEECC
Q psy13076 195 EGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ--EHSRFVQAVRYSP 272 (423)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~--~~~~~i~~l~~s~ 272 (423)
+++...++.|.+|+.... ...... .+...+..++++|
T Consensus 178 ----------------------------------------~v~~~~~~~i~~~~~~g~-~~~~~~~~g~~~~p~~i~~d~ 216 (286)
T 1q7f_A 178 ----------------------------------------FISDNRAHCVKVFNYEGQ-YLRQIGGEGITNYPIGVGINS 216 (286)
T ss_dssp ----------------------------------------EEEEGGGTEEEEEETTCC-EEEEESCTTTSCSEEEEEECT
T ss_pred ----------------------------------------EEEECCCCEEEEEcCCCC-EEEEEccCCccCCCcEEEECC
Confidence 333334555666654322 111221 2235678999999
Q ss_pred CCCEEEEEEecC-eEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076 273 SGSHFASAGFDG-KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK 338 (423)
Q Consensus 273 ~g~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~ 338 (423)
+|.++++...++ .|.+|+. +++.+..+........+.+++++|+|+++++ +.|++|++|++...
T Consensus 217 ~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 217 NGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp TCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 999888887776 9999995 4555555543222335789999999987777 67999999998653
No 173
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.75 E-value=3.4e-14 Score=137.80 Aligned_cols=318 Identities=18% Similarity=0.156 Sum_probs=206.7
Q ss_pred CCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEE
Q psy13076 57 PDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNV 136 (423)
Q Consensus 57 ~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~ 136 (423)
+.+.++++...+++|.++|.++++++..+. . ...++.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~------------------------------------------~-g~~p~~ 201 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLD------------------------------------------T-GYAVHI 201 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEE------------------------------------------C-SSCEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEe------------------------------------------C-CCCccc
Confidence 334456667777788888877765544331 1 113557
Q ss_pred EEECCCCCEEEEEccCCcEEEEEcC--CCceeEEeeecCCCCCeeEEEEC----CCCCeEEEEEcCCceeeEEEeecCCc
Q psy13076 137 AKYSPSGFYIASGDISGKVRIWDTV--NKEHILKNEFHPIGGPIKDIAWS----PDNQRMVVVGEGRERFGHVFMSETGT 210 (423)
Q Consensus 137 ~~~sp~~~~l~s~~~d~~i~vwd~~--~~~~~~~~~~~~~~~~v~~v~~s----~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (423)
+.|+|||+++++++.|+.|.+||+. +.+.... .. .......++|+ |||++++++...... ..+++..+.+
T Consensus 202 v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~--i~-~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~-v~ViD~~t~~ 277 (567)
T 1qks_A 202 SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE--IK-IGSEARSIETSKMEGWEDKYAIAGAYWPPQ-YVIMDGETLE 277 (567)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE--EE-CCSEEEEEEECCSTTCTTTEEEEEEEETTE-EEEEETTTCC
T ss_pred eEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEE--Ee-cCCCCceeEEccccCCCCCEEEEEEccCCe-EEEEECCCCc
Confidence 8999999999999999999999995 5444332 22 23345789999 699999888755443 3455666655
Q ss_pred ceecccCC-----------CcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce-eeeeccccccCeEEEEECCCCCEEE
Q psy13076 211 SVGEISGQ-----------SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK-FKMTKQEHSRFVQAVRYSPSGSHFA 278 (423)
Q Consensus 211 ~~~~~~~~-----------~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~-~~~~~~~~~~~i~~l~~s~~g~~l~ 278 (423)
.+..+... ...+..+..++.++..++.....|.|.+.+....+ +.............+.|+|+|++++
T Consensus 278 ~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~ 357 (567)
T 1qks_A 278 PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFI 357 (567)
T ss_dssp EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEE
T ss_pred EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEE
Confidence 55544321 11455677777777656666677899998865432 1111122334566789999999887
Q ss_pred EEE-ecCeEEEEECCCccceecccc---cccCCCeEEEEECCCC-CeEEEEe-CCCcEEEEecCC-------cceeeeee
Q psy13076 279 SAG-FDGKVFLYDGASADLVSELGN---PAHKGGVYAVAWKPDG-TQLLTAS-GDKTCKLWDIET-------KSAVSEFL 345 (423)
Q Consensus 279 s~s-~dg~i~vwd~~~~~~~~~~~~---~~~~~~i~~l~~~~~~-~~l~s~s-~d~~i~iwd~~~-------~~~i~~~~ 345 (423)
++. .++.|.++|.+++++...+.. ..|.+.-..+ ++|++ ...+++. .+++|.++|..+ .+.+.+..
T Consensus 358 va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~ 436 (567)
T 1qks_A 358 TAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFP 436 (567)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred EEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEe
Confidence 666 578999999999887655432 1243322223 58874 4445543 568999999987 55565554
Q ss_pred eCceeEeeEEEEEecCcEEEEEeC-------CCcEEEEecCCC-----CCceEEec-c-------CCCceeEEEecCCCC
Q psy13076 346 MGNQVEDQQVSCLWQGDYLLTVSL-------SGFISYLDVNNP-----STPIRVIK-G-------HNKPITALALSPDRG 405 (423)
Q Consensus 346 ~~~~~~~~~~~~~~~g~~l~~~~~-------~~~i~~~~~~~~-----~~~~~~~~-~-------h~~~v~~i~~sp~~~ 405 (423)
... .....+...+++.++.+... +..|.++|+.+. ...+..+. + -.+.+..+.|+|+|+
T Consensus 437 ~~g-~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 515 (567)
T 1qks_A 437 ALG-GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGT 515 (567)
T ss_dssp CSC-SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSS
T ss_pred cCC-CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCC
Confidence 321 11223455678888876553 458999999876 33333332 1 135789999999999
Q ss_pred eEEEe-c----CCCcEEEeeCCC
Q psy13076 406 TVFTG-S----HDGFITRWNAKT 423 (423)
Q Consensus 406 ~l~s~-s----~D~~i~~W~~~~ 423 (423)
.+..+ . .++.|.++|.+|
T Consensus 516 ~~~~s~~~~~~~~~~i~v~D~~t 538 (567)
T 1qks_A 516 EVWFSVWNGKDQESALVVVDDKT 538 (567)
T ss_dssp EEEEEEECCTTSCCEEEEEETTT
T ss_pred EEEEEeecCCCCCCcEEEEECCC
Confidence 86543 3 378999999765
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.74 E-value=3.3e-16 Score=156.61 Aligned_cols=288 Identities=13% Similarity=0.060 Sum_probs=184.7
Q ss_pred ccccccCCcceEEEEEECCCCCEEEEE--ccCCcEEEEEcCCCceeEEeeecCCCCCee---------EEEEC--CCCCe
Q psy13076 123 ISDIYTEHSCAVNVAKYSPSGFYIASG--DISGKVRIWDTVNKEHILKNEFHPIGGPIK---------DIAWS--PDNQR 189 (423)
Q Consensus 123 ~~~~~~~h~~~i~~~~~sp~~~~l~s~--~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~---------~v~~s--~~~~~ 189 (423)
..+.+.+|...+..++|+++..++++. +.++..+||......... .+......+. ...|+ |||+.
T Consensus 15 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~ 92 (662)
T 3azo_A 15 DAALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE--SALPAPWNVRNRVFEYSGFPWAGVPRPAGGP 92 (662)
T ss_dssp CHHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE--ESSCTTCCBCCCGGGTCCCCEEEECCSSSSC
T ss_pred CHHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc--eeCCCCccccccccccCCccceeeeecCCCe
Confidence 345677899999999999988888887 668899999964332222 1222223334 45565 99998
Q ss_pred -EEEEEcCCceeeEEEeecCC----cceecccC-----CCcceeEEEEecCCCeeEEEEeCC----------CeEEEEcC
Q psy13076 190 -MVVVGEGRERFGHVFMSETG----TSVGEISG-----QSKPINSCDFKPSRPFRIITGSED----------NTIAVFEG 249 (423)
Q Consensus 190 -~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~i~~~~~~~~~~~~~~s~s~d----------~~i~~~~~ 249 (423)
++...... ..+|..+.. .....+.. +...+..++|+|++.. ++.++.+ ..|++|+.
T Consensus 93 ~la~~~~~~---~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~~~~~~~~i~~~~~ 168 (662)
T 3azo_A 93 LLVFTHFGD---QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGE-VWCMAEEFTGEGPSDVRRFLAAVPL 168 (662)
T ss_dssp EEEEEBTTT---CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTE-EEEEEEEECSSSTTCEEEEEEEEET
T ss_pred EEEEEECCC---CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCE-EEEEEecccCCCCCCceeEEEEEEC
Confidence 76654432 235554432 44444544 5567889999999986 5555554 57899987
Q ss_pred CC------ceeeeecc-ccccCeEEEEECCCCCEEEEEEecC--------eEEEEECC-Ccc--ceecccccccCCCeEE
Q psy13076 250 PP------FKFKMTKQ-EHSRFVQAVRYSPSGSHFASAGFDG--------KVFLYDGA-SAD--LVSELGNPAHKGGVYA 311 (423)
Q Consensus 250 ~~------~~~~~~~~-~~~~~i~~l~~s~~g~~l~s~s~dg--------~i~vwd~~-~~~--~~~~~~~~~~~~~i~~ 311 (423)
.. .... .+. .+...+..++|||||++|+.++.++ .|++||.. +++ ....+. ..|...+..
T Consensus 169 ~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~-~~~~~~~~~ 246 (662)
T 3azo_A 169 DGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL-GGPEEAIAQ 246 (662)
T ss_dssp TSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE-EETTBCEEE
T ss_pred CCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC-CCCCceEcc
Confidence 65 4333 233 4445677899999999999888663 79999998 462 233332 234677899
Q ss_pred EEECCCCCeEEEEeCCC--cEEEEecCCcceeeeeeeCceeE-------eeEEEEEecCcEEEEEeCCCcEEEEecCCCC
Q psy13076 312 VAWKPDGTQLLTASGDK--TCKLWDIETKSAVSEFLMGNQVE-------DQQVSCLWQGDYLLTVSLSGFISYLDVNNPS 382 (423)
Q Consensus 312 l~~~~~~~~l~s~s~d~--~i~iwd~~~~~~i~~~~~~~~~~-------~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~ 382 (423)
++|+|||++++++..++ .|.+||+.+++............ ...+.+.+++..++++.. +...+|.+....
T Consensus 247 ~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~ 325 (662)
T 3azo_A 247 AEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPES 325 (662)
T ss_dssp EEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTT
T ss_pred eEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCC
Confidence 99999999888888888 55566665655432211111110 123444557888888888 888888544332
Q ss_pred CceEEeccCCCceeEE-EecCCCCeEEEecCCCcEEEe
Q psy13076 383 TPIRVIKGHNKPITAL-ALSPDRGTVFTGSHDGFITRW 419 (423)
Q Consensus 383 ~~~~~~~~h~~~v~~i-~~sp~~~~l~s~s~D~~i~~W 419 (423)
..++.+..|...+..+ ++.++.-.+++++.+....+|
T Consensus 326 ~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 326 GELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp TEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred CcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 3367778888888877 554333334455666555554
No 175
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.74 E-value=1.6e-16 Score=148.23 Aligned_cols=302 Identities=14% Similarity=0.072 Sum_probs=176.2
Q ss_pred eeeEEEEeCCEEEEEecc---ceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeec
Q psy13076 8 QQVSCLWQGDYLLTVSLS---GFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFAT 84 (423)
Q Consensus 8 ~~~~~~~~~~~~~~~~~d---g~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~ 84 (423)
..+++++||++|+.++.. ..|++||+.+ .+......++......+.|+|+++.|+.++.++.|++||+.+++....
T Consensus 39 ~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 39 YQKCFTQDGKKLLFAGDFDGNRNYYLLNLET-QQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TSCCBCTTSCEEEEEECTTSSCEEEEEETTT-TEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred ecCcCCCCCCEEEEEEecCCCceEEEEECCC-CcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 456778899999887654 4788888765 333333333333344588999999999999999999999988754332
Q ss_pred ccCCCCCCceEEeeCCCCCeEEEecCCe-EEEEecCCCcccccccCCcceEEEEEECCCCCEEEEE-----ccCCcEEEE
Q psy13076 85 LPRTQRGQPIVLGGDPKGKNFLYTNGNS-VIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASG-----DISGKVRIW 158 (423)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~-----~~d~~i~vw 158 (423)
..... + +.++|+.+++..... ..++. ....|+|+++.++.. ..+..|.+|
T Consensus 118 ~~~~~-~------~~~~g~~l~~~~~~~~~~~~~-----------------~~~~~spdg~~~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 118 YTVDE-E------WKGYGTWVANSDCTKLVGIEI-----------------LKRDWQPLTSWEKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp EECCT-T------EEEEEEEEECTTSSEEEEEEE-----------------EGGGCCCCCSHHHHHHHHHTCCCEEEEEE
T ss_pred Eeccc-c------cCCCCCEEEeccCCccccccc-----------------cccccCCCCcceeeeeeccCCCcceEEEE
Confidence 21110 0 223344443332211 11111 123578999887765 356789999
Q ss_pred EcCCCceeEEeeecCCCCCeeEEEECC-CCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEE
Q psy13076 159 DTVNKEHILKNEFHPIGGPIKDIAWSP-DNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIIT 237 (423)
Q Consensus 159 d~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s 237 (423)
|+.+++..... .....+..+.|+| +++.++.++.+...
T Consensus 174 d~~~g~~~~~~---~~~~~~~~~~~sp~dg~~l~~~~~~~~~-------------------------------------- 212 (396)
T 3c5m_A 174 DIETGELEVIH---QDTAWLGHPIYRPFDDSTVGFCHEGPHD-------------------------------------- 212 (396)
T ss_dssp ETTTCCEEEEE---EESSCEEEEEEETTEEEEEEEEECSCSS--------------------------------------
T ss_pred ECCCCcEEeec---cCCcccccceECCCCCCEEEEEecCCCC--------------------------------------
Confidence 98876543222 1234577888999 67766654321100
Q ss_pred EeCCCeEEEEcCCCceeeeecccc-ccCeEEEEECCCCCEEEEEEec-----CeEEEEECCCccceecccccccCCCeEE
Q psy13076 238 GSEDNTIAVFEGPPFKFKMTKQEH-SRFVQAVRYSPSGSHFASAGFD-----GKVFLYDGASADLVSELGNPAHKGGVYA 311 (423)
Q Consensus 238 ~s~d~~i~~~~~~~~~~~~~~~~~-~~~i~~l~~s~~g~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~i~~ 311 (423)
.....|.+++............. ...+..++|+|+|++|+.++.+ +.|++||..+++........ ...
T Consensus 213 -~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~----~~~- 286 (396)
T 3c5m_A 213 -LVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP----PCS- 286 (396)
T ss_dssp -SCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC----SEE-
T ss_pred -CCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC----CCC-
Confidence 00122334443222211111111 2246788999999988887765 45999999877643221111 233
Q ss_pred EEECC-CCCeEEEEe----------------CCCcEEEEecCCcceeeeeeeCce-e---------EeeEEEEEecCcEE
Q psy13076 312 VAWKP-DGTQLLTAS----------------GDKTCKLWDIETKSAVSEFLMGNQ-V---------EDQQVSCLWQGDYL 364 (423)
Q Consensus 312 l~~~~-~~~~l~s~s----------------~d~~i~iwd~~~~~~i~~~~~~~~-~---------~~~~~~~~~~g~~l 364 (423)
+.|+| +|++++.++ .+..|.+||+.+++.. .+..... . ........++|+.|
T Consensus 287 ~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 365 (396)
T 3c5m_A 287 HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGV 365 (396)
T ss_dssp EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEE
T ss_pred CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeE
Confidence 88999 999888765 3478999999877642 2221111 0 01223456789988
Q ss_pred EEEeC-CCc--EEEEecCCCC
Q psy13076 365 LTVSL-SGF--ISYLDVNNPS 382 (423)
Q Consensus 365 ~~~~~-~~~--i~~~~~~~~~ 382 (423)
+..+. ++. ++.+++....
T Consensus 366 ~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 366 LFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp EEEECTTSSCEEEEEECCTTC
T ss_pred EEEecCCCCceEEEEEEcccc
Confidence 87764 443 5555555443
No 176
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.74 E-value=5.1e-15 Score=131.84 Aligned_cols=248 Identities=12% Similarity=0.070 Sum_probs=159.8
Q ss_pred cCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec
Q psy13076 128 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE 207 (423)
Q Consensus 128 ~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~ 207 (423)
.+|...+..++++|+++++++...++.|++||.. ++..........
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~--------------------------------- 71 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGK--------------------------------- 71 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSS---------------------------------
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCC---------------------------------
Confidence 3566778999999999998988889999999975 332211110000
Q ss_pred CCcceecccCCCcceeEEEEecCCCeeEEEEe-CCCeEEEEcCCCceeeeec-cccccCeEEEEECCCCCEEEEEEecCe
Q psy13076 208 TGTSVGEISGQSKPINSCDFKPSRPFRIITGS-EDNTIAVFEGPPFKFKMTK-QEHSRFVQAVRYSPSGSHFASAGFDGK 285 (423)
Q Consensus 208 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s-~d~~i~~~~~~~~~~~~~~-~~~~~~i~~l~~s~~g~~l~s~s~dg~ 285 (423)
...+...+..+++.+....++++.. .++.|.+|+. ..+..... ..+...+..++++|+|+++++...++.
T Consensus 72 -------~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 143 (286)
T 1q7f_A 72 -------RDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMR 143 (286)
T ss_dssp -------STTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTE
T ss_pred -------CcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCE
Confidence 0011122334444322222233332 2567777773 22222222 223346789999999998888778899
Q ss_pred EEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCc-eeEeeEEEEEecCcEE
Q psy13076 286 VFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGN-QVEDQQVSCLWQGDYL 364 (423)
Q Consensus 286 i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~-~~~~~~~~~~~~g~~l 364 (423)
|.+||. .++....+....+...+.+++++|+|+++++.+.++.|++||.. ++.+..+.... ......+.+.++|..+
T Consensus 144 i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~ 221 (286)
T 1q7f_A 144 VIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEIL 221 (286)
T ss_dssp EEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEE
T ss_pred EEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEE
Confidence 999995 45555444322344568999999999988888889999999974 44455443221 1223445666788877
Q ss_pred EEEeCCC-cEEEEecCCCCCceEEeccCCC--ceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076 365 LTVSLSG-FISYLDVNNPSTPIRVIKGHNK--PITALALSPDRGTVFTGSHDGFITRWNAK 422 (423)
Q Consensus 365 ~~~~~~~-~i~~~~~~~~~~~~~~~~~h~~--~v~~i~~sp~~~~l~s~s~D~~i~~W~~~ 422 (423)
++...++ .|.+|+... ..+..+..+.. .+.+++++|+++++++ +.|++|++|+..
T Consensus 222 v~~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~ 279 (286)
T 1q7f_A 222 IADNHNNFNLTIFTQDG--QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV 279 (286)
T ss_dssp EEECSSSCEEEEECTTS--CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred EEeCCCCEEEEEECCCC--CEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence 7777775 999998543 33444444433 4789999999988877 569999999864
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.73 E-value=7.3e-15 Score=134.62 Aligned_cols=253 Identities=14% Similarity=0.114 Sum_probs=160.2
Q ss_pred eCCEEEEEe---------ccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCC---Cc--eEEeecCCcc
Q psy13076 15 QGDYLLTVS---------LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHD---GF--ITRWNAKTEY 80 (423)
Q Consensus 15 ~~~~~~~~~---------~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D---~~--i~vW~~~~~~ 80 (423)
||++++... .++.|++||+.++ ++ ..+ ..+..++|+|+|++|+..+.+ +. |.+|++++++
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~-~~-~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~ 96 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKNN-AR-RFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLS 96 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTTC-CE-EEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTE
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCCC-ce-EEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCc
Confidence 899998763 3678999998753 32 334 568899999999998887654 23 6666776654
Q ss_pred eeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEcc---------
Q psy13076 81 IFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI--------- 151 (423)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~--------- 151 (423)
..... ..+ . +..+.|+|||+.|+.++.
T Consensus 97 ~~~l~------------------------------------------~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~ 132 (347)
T 2gop_A 97 SKKIL------------------------------------------EAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFI 132 (347)
T ss_dssp EEEEE------------------------------------------EES-E-EEEEEECTTSSEEEEEEECCCC-----
T ss_pred eEEEE------------------------------------------cCC-C-ccceeECCCCCEEEEEEccCCCcCCcE
Confidence 32211 111 1 556667777766666543
Q ss_pred ------------------CCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCc----e-eeEEEeecC
Q psy13076 152 ------------------SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE----R-FGHVFMSET 208 (423)
Q Consensus 152 ------------------d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~----~-~~~~~~~~~ 208 (423)
...|.+||+.+++....... . .+..++|+|+| .+++...... . ...++..+
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~---~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d- 206 (347)
T 2gop_A 133 FEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK---P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE- 206 (347)
T ss_dssp ----CCCC---------CEEEEEEEETTTTEEEEEEEE---E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-
T ss_pred EEcccceeecCcccccCccceEEEEECCCCeEEeeecC---C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-
Confidence 25789999987664222222 2 57889999999 5544433211 1 33455554
Q ss_pred CcceecccCCCcceeEEEEecCCCeeEEEEeCC-------CeEEEEcCCCceeeeeccccccCeEE-EEECCCCCEEEEE
Q psy13076 209 GTSVGEISGQSKPINSCDFKPSRPFRIITGSED-------NTIAVFEGPPFKFKMTKQEHSRFVQA-VRYSPSGSHFASA 280 (423)
Q Consensus 209 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d-------~~i~~~~~~~~~~~~~~~~~~~~i~~-l~~s~~g~~l~s~ 280 (423)
......+..+ ..+..+ +|++..+++.+..+ ..|.+|+ ..+.......+...+.. +.|+ +| +++++
T Consensus 207 ~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~ 279 (347)
T 2gop_A 207 DGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTL 279 (347)
T ss_dssp TTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEE
T ss_pred CCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEE
Confidence 3333333333 334433 88888744444332 4688888 33333333445566775 8999 88 88999
Q ss_pred EecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcE-EEEecC
Q psy13076 281 GFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTC-KLWDIE 336 (423)
Q Consensus 281 s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i-~iwd~~ 336 (423)
+.++.+++| ..+++. ..+. .+.+.+.+++|+| ..+++++.++.. +||.+.
T Consensus 280 ~~~~~~~l~-~~~g~~-~~~~--~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 280 FEEGSVNLY-IWDGEI-KPIA--KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EETTEEEEE-EESSSE-EEEE--CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred ecCCcEEEE-EcCCce-EEEe--cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 999999999 775543 2332 2466789999999 677777777665 788776
No 178
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.72 E-value=1.1e-13 Score=134.28 Aligned_cols=326 Identities=14% Similarity=0.111 Sum_probs=218.4
Q ss_pred EeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecC--CcceeecccCCCCC
Q psy13076 14 WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK--TEYIFATLPRTQRG 91 (423)
Q Consensus 14 ~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~--~~~~~~~~~~~~~~ 91 (423)
+.+.++++...++.|.++|..+ .+.+.++... ..+..+.|+|++++|++++.|+.|.+||+. +.++...+... .
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t-~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G--~ 240 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGST-YEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG--S 240 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTT-CCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC--S
T ss_pred CCceEEEEeCCCCeEEEEECCC-CeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC--C
Confidence 4567788888899999999976 4555566532 356689999999999999999999999995 77666655432 2
Q ss_pred CceEEeeC----CCCCeEEEec--CCeEEEEecCCCcccccccC----------Ccc-eEEEEEECCCCC-EEEEEccCC
Q psy13076 92 QPIVLGGD----PKGKNFLYTN--GNSVIIRNIENPAISDIYTE----------HSC-AVNVAKYSPSGF-YIASGDISG 153 (423)
Q Consensus 92 ~~~~~~~~----~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~----------h~~-~i~~~~~sp~~~-~l~s~~~d~ 153 (423)
.+.-+.++ |+|+.++..+ .+.+.++|..+.+..+.+.- |.. .+..+.+++++. ++++...+|
T Consensus 241 ~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g 320 (567)
T 1qks_A 241 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG 320 (567)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCC
Confidence 34556677 6998777654 57888999888776655431 222 677888888755 455566779
Q ss_pred cEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccC-CC--cceeEEE-Eec
Q psy13076 154 KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISG-QS--KPINSCD-FKP 229 (423)
Q Consensus 154 ~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~i~~~~-~~~ 229 (423)
.|.++|....+....... ........+.|+|++++++++...... ..+++..+++.+..+.. .. .+-.... ++|
T Consensus 321 ~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~-V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p 398 (567)
T 1qks_A 321 KILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNK-LVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHP 398 (567)
T ss_dssp EEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTE-EEEEETTTTEEEEEEECSSSSBCCTTCEEEEET
T ss_pred eEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCe-EEEEECCCCcEEEEEeccCcCCCCccceeeECC
Confidence 999999876543322222 223456788999999999888754433 45667776665544432 11 1111222 567
Q ss_pred CCCeeEEEEe-CCCeEEEEcCCC-------ceeeeeccccccCeEEEEECCCCCEEEEEEe-------cCeEEEEECCCc
Q psy13076 230 SRPFRIITGS-EDNTIAVFEGPP-------FKFKMTKQEHSRFVQAVRYSPSGSHFASAGF-------DGKVFLYDGASA 294 (423)
Q Consensus 230 ~~~~~~~s~s-~d~~i~~~~~~~-------~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~-------dg~i~vwd~~~~ 294 (423)
++....+++. .++.|.+++..+ ++...+.......-..+..+|+++++.+... .+.|.++|..+.
T Consensus 399 ~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 399 TFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 6554455554 468999998765 5554444433222234678999999887663 469999998876
Q ss_pred -----cce-ecccc------cccCCCeEEEEECCCCCeEEEEe-----CCCcEEEEecCCcceeeeee
Q psy13076 295 -----DLV-SELGN------PAHKGGVYAVAWKPDGTQLLTAS-----GDKTCKLWDIETKSAVSEFL 345 (423)
Q Consensus 295 -----~~~-~~~~~------~~~~~~i~~l~~~~~~~~l~s~s-----~d~~i~iwd~~~~~~i~~~~ 345 (423)
... ..+.. ......+..+.|+|+|+++..+. .++.|.++|.++.+++....
T Consensus 479 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 479 TGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp CCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred cccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 211 22210 01134678999999998776653 37899999999998766553
No 179
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.70 E-value=6.8e-15 Score=133.94 Aligned_cols=243 Identities=12% Similarity=0.124 Sum_probs=166.9
Q ss_pred eeEEEEeCCEEEEEecc------------------------ceEEEEeccCCCCceeecc-cccCceeEEEEeCCCCeEE
Q psy13076 9 QVSCLWQGDYLLTVSLS------------------------GFISYLDVNNPSTPIRVIK-GHNKPITALALSPDRGTVF 63 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~d------------------------g~i~~~d~~~~~~~~~~~~-gh~~~V~~l~~~~~~~~l~ 63 (423)
-||+++||+++++...+ +.|.+||..++ +....+. ++......++++|++++++
T Consensus 28 ~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~p~gia~d~~g~l~v 106 (329)
T 3fvz_A 28 GVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA-EILQSSGKNLFYLPHGLSIDTDGNYWV 106 (329)
T ss_dssp EEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC-CEEEEECTTTCSSEEEEEECTTSCEEE
T ss_pred EEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC-eEEeccCCCccCCceEEEECCCCCEEE
Confidence 47788899999988877 47999998653 3343333 5666889999999999999
Q ss_pred EecCCCceEEeecCCcc-eeeccc--------CCCCCCceEEeeCC-CCCeEEEec--CCeEEEEecCCCccccccc---
Q psy13076 64 TGSHDGFITRWNAKTEY-IFATLP--------RTQRGQPIVLGGDP-KGKNFLYTN--GNSVIIRNIENPAISDIYT--- 128 (423)
Q Consensus 64 sg~~D~~i~vW~~~~~~-~~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~i~~~~~~~~~~~~~--- 128 (423)
+...++.|++||.+... .+..+. ......+.-+..+| +++.++... ...+.+++. ++.....+.
T Consensus 107 ~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~~~~~~g 185 (329)
T 3fvz_A 107 TDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVTQWGEES 185 (329)
T ss_dssp EETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEEEECEEC
T ss_pred EECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEEEeccCC
Confidence 99999999999987542 222221 11223466688888 788887763 578888884 455554443
Q ss_pred -------CCcceEEEEEECCC-CCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCcee
Q psy13076 129 -------EHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF 200 (423)
Q Consensus 129 -------~h~~~i~~~~~sp~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~ 200 (423)
++......++++|+ +.++++...++.|++||..+++.+...........+..++|+| + .++.. .+.
T Consensus 186 ~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g-~~~~~-~g~--- 259 (329)
T 3fvz_A 186 SGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-G-FLFAV-NGK--- 259 (329)
T ss_dssp CSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-T-EEEEE-ECC---
T ss_pred CCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-C-EEEEe-CCC---
Confidence 23345889999998 7777888888999999988666554433334455677888888 3 22221 111
Q ss_pred eEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeec---cccccCeEEEEECCCCCEE
Q psy13076 201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK---QEHSRFVQAVRYSPSGSHF 277 (423)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~---~~~~~~i~~l~~s~~g~~l 277 (423)
..++...+..+++|+....+....+ ..+...+..++++|+|.++
T Consensus 260 ---------------------------------~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~ly 306 (329)
T 3fvz_A 260 ---------------------------------PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVY 306 (329)
T ss_dssp ---------------------------------CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEE
T ss_pred ---------------------------------EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEE
Confidence 0122234456777775555444443 3455668899999999888
Q ss_pred EEEEecCeEEEEECC
Q psy13076 278 ASAGFDGKVFLYDGA 292 (423)
Q Consensus 278 ~s~s~dg~i~vwd~~ 292 (423)
++...++.|++|+..
T Consensus 307 vad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 307 IGDAHTNTVWKFTLT 321 (329)
T ss_dssp EEESSSCCEEEEEEE
T ss_pred EEECCCCEEEEEeCC
Confidence 888889999999864
No 180
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.69 E-value=9.2e-15 Score=146.83 Aligned_cols=283 Identities=8% Similarity=-0.040 Sum_probs=177.0
Q ss_pred EEEEeCCEEEEEeccc-----eEEEEeccCCCCceeec------ccccCceeEEEEeCCCCeEE-----EecCCCceEEe
Q psy13076 11 SCLWQGDYLLTVSLSG-----FISYLDVNNPSTPIRVI------KGHNKPITALALSPDRGTVF-----TGSHDGFITRW 74 (423)
Q Consensus 11 ~~~~~~~~~~~~~~dg-----~i~~~d~~~~~~~~~~~------~gh~~~V~~l~~~~~~~~l~-----sg~~D~~i~vW 74 (423)
...+||++++-...++ .|++.+... ......+ ++|...+..++|||||++|| +|+.+.+|++|
T Consensus 74 ~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~ 152 (695)
T 2bkl_A 74 TPSRRNGRFFYVRTHKDKEKAILYWRQGES-GQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVI 152 (695)
T ss_dssp CCEEETTEEEEEEECTTCSSCEEEEEESTT-SCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEE
T ss_pred CCEEECCEEEEEEEcCCCeEEEEEEEcCCC-CCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEE
Confidence 3447999999888765 344555433 2222222 35666899999999999998 67777899999
Q ss_pred ecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCc
Q psy13076 75 NAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGK 154 (423)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~ 154 (423)
|+++++.+... .+.... ...+.|+|||+.|+.++.|..
T Consensus 153 dl~tg~~~~~~----------------------------------------~~~~~~--~~~~~wspDg~~l~~~~~d~~ 190 (695)
T 2bkl_A 153 DVDSGEWSKVD----------------------------------------VIEGGK--YATPKWTPDSKGFYYEWLPTD 190 (695)
T ss_dssp ETTTCCBCSSC----------------------------------------CBSCCT--TCCCEECTTSSEEEEEECCCC
T ss_pred ECCCCCCcCCc----------------------------------------ccCccc--ccceEEecCCCEEEEEEecCC
Confidence 99987542000 000010 135679999999998888776
Q ss_pred -------------EEEEEcCCCce--eEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecC-CcceecccCC
Q psy13076 155 -------------VRIWDTVNKEH--ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSET-GTSVGEISGQ 218 (423)
Q Consensus 155 -------------i~vwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 218 (423)
|++|++.+... .+..........+..+.|+|||+++++..........++..+. +.....+..+
T Consensus 191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 270 (695)
T 2bkl_A 191 PSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKG 270 (695)
T ss_dssp TTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEEC
T ss_pred CCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecC
Confidence 99999987652 2222222223467899999999999887654411223443332 2233444444
Q ss_pred CcceeEEEEecCCCeeEEEEe---CCCeEEEEcCCCcee---eeecccc-ccCeEEEEECCCCCEEEEEEecCeEEEEEC
Q psy13076 219 SKPINSCDFKPSRPFRIITGS---EDNTIAVFEGPPFKF---KMTKQEH-SRFVQAVRYSPSGSHFASAGFDGKVFLYDG 291 (423)
Q Consensus 219 ~~~i~~~~~~~~~~~~~~s~s---~d~~i~~~~~~~~~~---~~~~~~~-~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~ 291 (423)
........+ +++. .++... .++.|.+|+...... ......+ ...+..++++ ++.++++...|+..++|..
T Consensus 271 ~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 347 (695)
T 2bkl_A 271 VGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVA 347 (695)
T ss_dssp SSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred CCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 444445555 5555 455554 357899998654321 1112222 3457778887 6778888999998887755
Q ss_pred C-CccceecccccccCCCeEEEEECCCCCeEEEE----eCCCcEEEEecCCcce
Q psy13076 292 A-SADLVSELGNPAHKGGVYAVAWKPDGTQLLTA----SGDKTCKLWDIETKSA 340 (423)
Q Consensus 292 ~-~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~----s~d~~i~iwd~~~~~~ 340 (423)
. +++....+.. ...+.+..++++|+++.|+.. ...++|.+||+.+++.
T Consensus 348 ~~~g~~~~~l~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 348 TLKGKPVRTVQL-PGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp ETTCCEEEECCC-SSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred eCCCCeeEEecC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 4 3444444432 125567788899999877632 2346899999988763
No 181
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.68 E-value=3e-14 Score=129.76 Aligned_cols=267 Identities=12% Similarity=0.097 Sum_probs=173.8
Q ss_pred EeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCc
Q psy13076 14 WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQP 93 (423)
Q Consensus 14 ~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~ 93 (423)
+++..++..+.++.++.|. .++...+.++...+.+++|++++++++++..++.|.+||.++++....
T Consensus 15 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~--------- 81 (333)
T 2dg1_A 15 GKSNSAVPIISESELQTIT----AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP--------- 81 (333)
T ss_dssp GGGGCSSCCCCGGGSCEEE----CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE---------
T ss_pred CCccceeEEeecccCcccc----cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE---------
Confidence 3566666667788888883 345666777777789999999999888888899999998876543211
Q ss_pred eEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccC----CcEEEEEcCCCceeEEe
Q psy13076 94 IVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS----GKVRIWDTVNKEHILKN 169 (423)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d----~~i~vwd~~~~~~~~~~ 169 (423)
...+...+.+++++|+|+++++...+ +.|.+||..+.......
T Consensus 82 ---------------------------------~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~ 128 (333)
T 2dg1_A 82 ---------------------------------FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII 128 (333)
T ss_dssp ---------------------------------EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE
T ss_pred ---------------------------------eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEE
Confidence 01133468889999999988877666 68999998765533111
Q ss_pred eecCCCCCeeEEEECCCCCeEEEEEcC--CceeeEEEeecCC-cceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEE
Q psy13076 170 EFHPIGGPIKDIAWSPDNQRMVVVGEG--RERFGHVFMSETG-TSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAV 246 (423)
Q Consensus 170 ~~~~~~~~v~~v~~s~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~ 246 (423)
........+.+++++|+|+.+++.... ......++..+.. .....+......+..++++|++..+.++.+.++.|.+
T Consensus 129 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~ 208 (333)
T 2dg1_A 129 EDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHR 208 (333)
T ss_dssp CSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred ccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEE
Confidence 111233568899999999866654321 0111234444322 2222222223346789999998865666677889999
Q ss_pred EcCCC--ceee-------eeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccccc----ccCCCeEEEE
Q psy13076 247 FEGPP--FKFK-------MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP----AHKGGVYAVA 313 (423)
Q Consensus 247 ~~~~~--~~~~-------~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~----~~~~~i~~l~ 313 (423)
|+... .... .....+ ..+..++++++|.++++...++.|.+||. +++.+..+... +|...+.+++
T Consensus 209 ~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~ 286 (333)
T 2dg1_A 209 IALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQ 286 (333)
T ss_dssp EEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEE
T ss_pred EEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEE
Confidence 98632 1111 011111 35678999999998887777899999997 45555444321 1222578999
Q ss_pred ECCCCCeEEEEeCCC
Q psy13076 314 WKPDGTQLLTASGDK 328 (423)
Q Consensus 314 ~~~~~~~l~s~s~d~ 328 (423)
|+|+++.|..++.++
T Consensus 287 ~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 287 FIPGTNQLIICSNDI 301 (333)
T ss_dssp ECTTSCEEEEEEECG
T ss_pred ECCCCCEEEEEeCcc
Confidence 999987776555543
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.68 E-value=6.3e-14 Score=141.10 Aligned_cols=281 Identities=10% Similarity=-0.022 Sum_probs=177.2
Q ss_pred EEEeCCEEEEEeccc-----eEEEEeccCCCCceeec------ccccCceeEEEEeCCCCeEEEecCCC-----ceEEee
Q psy13076 12 CLWQGDYLLTVSLSG-----FISYLDVNNPSTPIRVI------KGHNKPITALALSPDRGTVFTGSHDG-----FITRWN 75 (423)
Q Consensus 12 ~~~~~~~~~~~~~dg-----~i~~~d~~~~~~~~~~~------~gh~~~V~~l~~~~~~~~l~sg~~D~-----~i~vW~ 75 (423)
..+||++++-...++ .|.+.+... ......+ ++|...+..++|||||++|+.++.++ +|++||
T Consensus 79 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d 157 (710)
T 2xdw_A 79 HFKKGKRYFYFYNTGLQNQRVLYVQDSLE-GEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMK 157 (710)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEESSTT-SCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEE
T ss_pred CEEECCEEEEEEEcCCceEEEEEEEcCCC-CCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 348999998776543 445555433 2222121 34555788999999999988765543 899999
Q ss_pred cCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCc-
Q psy13076 76 AKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGK- 154 (423)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~- 154 (423)
+++++...... . + ..+..+.|+|||+.|+.++.++.
T Consensus 158 ~~tg~~~~~~~-----------------------------------------~-~-~~~~~~~wspDg~~l~~~~~~~~~ 194 (710)
T 2xdw_A 158 VDGAKELPDVL-----------------------------------------E-R-VKFSCMAWTHDGKGMFYNAYPQQD 194 (710)
T ss_dssp TTTTEEEEEEE-----------------------------------------E-E-ECSCCEEECTTSSEEEEEECCCCS
T ss_pred CCCCCCCcccc-----------------------------------------c-C-cccceEEEEeCCCEEEEEEECCcc
Confidence 98876432110 0 0 01345778898888888777665
Q ss_pred ---------------EEEEEcCCCcee--EEeeecCCCCCeeEEEECCCCCeEEEEEcCC---ceeeEEEeecC------
Q psy13076 155 ---------------VRIWDTVNKEHI--LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR---ERFGHVFMSET------ 208 (423)
Q Consensus 155 ---------------i~vwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~---~~~~~~~~~~~------ 208 (423)
|.+|++.+.... ...........+..+.|+|||++++...... .....+++...
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 274 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT 274 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccC
Confidence 999999775421 2112221234467899999999998876422 22334444443
Q ss_pred Cc-ceecccCCCcceeEEEEecCCCeeEEEEeCC---CeEEEEcCCCcee--eeeccccc--cCeEEEEECCCCCEEEEE
Q psy13076 209 GT-SVGEISGQSKPINSCDFKPSRPFRIITGSED---NTIAVFEGPPFKF--KMTKQEHS--RFVQAVRYSPSGSHFASA 280 (423)
Q Consensus 209 ~~-~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d---~~i~~~~~~~~~~--~~~~~~~~--~~i~~l~~s~~g~~l~s~ 280 (423)
+. ....+..+...+.. .++|++..+++.+..+ ..|.+|+...... ...+..+. ..+..++|++++.++++.
T Consensus 275 ~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~ 353 (710)
T 2xdw_A 275 GILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353 (710)
T ss_dssp SSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE
T ss_pred CccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEE
Confidence 32 34444444444433 4778887655555443 3688888654321 11222232 357788998888888888
Q ss_pred EecCe--EEEEECCCccceecccccccCCCeEEEEECCCCCeEEEE-e---CCCcEEEEecCCcc
Q psy13076 281 GFDGK--VFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTA-S---GDKTCKLWDIETKS 339 (423)
Q Consensus 281 s~dg~--i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~-s---~d~~i~iwd~~~~~ 339 (423)
..|+. |.+|+..+++....+.. +.+.+..++++|+++.++.. + ..+++.+||+.+++
T Consensus 354 ~~~g~~~l~~~~~~~g~~~~~l~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 354 LHDVKNTLQLHDLATGALLKIFPL--EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EETTEEEEEEEETTTCCEEEEECC--CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EECCEEEEEEEECCCCCEEEecCC--CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 88884 66778767776666643 46778889999998766533 2 24689999998876
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.65 E-value=3.3e-13 Score=135.89 Aligned_cols=259 Identities=11% Similarity=0.102 Sum_probs=160.7
Q ss_pred CCcceEEEEEECCCCCEEEEEccCC-----cEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEE
Q psy13076 129 EHSCAVNVAKYSPSGFYIASGDISG-----KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHV 203 (423)
Q Consensus 129 ~h~~~i~~~~~sp~~~~l~s~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~ 203 (423)
+|...+...+|||||++||.+..++ +|++||+.+++..... ... ..+..++|+|||+.++........
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~-~~~--~~~~~~~wspDg~~l~~~~~~~~~---- 194 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LER--VKFSCMAWTHDGKGMFYNAYPQQD---- 194 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEE--ECSCCEEECTTSSEEEEEECCCCS----
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc-ccC--cccceEEEEeCCCEEEEEEECCcc----
Confidence 5666789999999999999766543 8999999887754321 111 225679999999998876543210
Q ss_pred EeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce----eeeeccccccCeEEEEECCCCCEEEE
Q psy13076 204 FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK----FKMTKQEHSRFVQAVRYSPSGSHFAS 279 (423)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~----~~~~~~~~~~~i~~l~~s~~g~~l~s 279 (423)
... .+.. . .......|++|+..... +......+...+..+.|+|||++|+.
T Consensus 195 -----~~~----~~~~----------~------~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~ 249 (710)
T 2xdw_A 195 -----GKS----DGTE----------T------STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL 249 (710)
T ss_dssp -----SCC----SSSC----------C------CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred -----ccc----cccc----------c------ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEE
Confidence 000 0000 0 00123446666654322 22222334556788999999999988
Q ss_pred EEe-----cCeEEEEECCC------cc-ceecccccccCCCeEEEEECCCCCeEEEEeCCC----cEEEEecCCcc--ee
Q psy13076 280 AGF-----DGKVFLYDGAS------AD-LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK----TCKLWDIETKS--AV 341 (423)
Q Consensus 280 ~s~-----dg~i~vwd~~~------~~-~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~----~i~iwd~~~~~--~i 341 (423)
++. +..|++||..+ +. ....+. .+...+.. .|+|+|+.|+..+.++ .|.+||+.++. ..
T Consensus 250 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~--~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 326 (710)
T 2xdw_A 250 SIREGCDPVNRLWYCDLQQESNGITGILKWVKLI--DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKW 326 (710)
T ss_dssp EEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE--CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGC
T ss_pred EEEccCCCccEEEEEECcccccccCCccceEEee--CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccc
Confidence 776 56899999876 43 233443 24444444 4889998877666533 59999998763 12
Q ss_pred eeeeeCce-eEeeEEEEEecCcEEEEEeCCCc--EEEEecCCCCCceEEeccCCCceeEEEecCCCCeEE-Ee---cCCC
Q psy13076 342 SEFLMGNQ-VEDQQVSCLWQGDYLLTVSLSGF--ISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVF-TG---SHDG 414 (423)
Q Consensus 342 ~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~--i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~-s~---s~D~ 414 (423)
..+..... .....+....++..+++...++. |.+|+..++ ..++.+..+...|..++++|+++.|+ +. ...+
T Consensus 327 ~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g-~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~ 405 (710)
T 2xdw_A 327 KVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG-ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPG 405 (710)
T ss_dssp EEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC-CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCC
T ss_pred eeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC-CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCC
Confidence 33332222 12222333334555667777774 566666443 34566777788899999999998665 32 2457
Q ss_pred cEEEeeCCC
Q psy13076 415 FITRWNAKT 423 (423)
Q Consensus 415 ~i~~W~~~~ 423 (423)
+|..||+.+
T Consensus 406 ~i~~~d~~t 414 (710)
T 2xdw_A 406 IIYHCDLTK 414 (710)
T ss_dssp EEEEEETTS
T ss_pred EEEEEECCC
Confidence 899999753
No 184
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.65 E-value=4.8e-14 Score=141.60 Aligned_cols=256 Identities=13% Similarity=0.047 Sum_probs=156.8
Q ss_pred CCcceEEEEEECCCCCEEE-----EEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEE
Q psy13076 129 EHSCAVNVAKYSPSGFYIA-----SGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHV 203 (423)
Q Consensus 129 ~h~~~i~~~~~sp~~~~l~-----s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~ 203 (423)
+|...+...+|||||++|| +|+.+.+|++||+.+++........ ......++|+|||+.++........
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~~~~~~~~wspDg~~l~~~~~d~~~---- 191 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE--GGKYATPKWTPDSKGFYYEWLPTDP---- 191 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS--CCTTCCCEECTTSSEEEEEECCCCT----
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC--cccccceEEecCCCEEEEEEecCCC----
Confidence 5777899999999999999 4555678999999887653111111 1112578999999988876532210
Q ss_pred EeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce----eeeeccccccCeEEEEECCCCCEEEE
Q psy13076 204 FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK----FKMTKQEHSRFVQAVRYSPSGSHFAS 279 (423)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~----~~~~~~~~~~~i~~l~~s~~g~~l~s 279 (423)
.+.. .. ......|++|+..+.. +......+...+..+.|+|||++|+.
T Consensus 192 ----~~~~----~~--------------------~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~ 243 (695)
T 2bkl_A 192 ----SIKV----DE--------------------RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFV 243 (695)
T ss_dssp ----TSCG----GG--------------------GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEE
T ss_pred ----CCcc----cc--------------------CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEE
Confidence 0000 00 0112345666543222 22233344557889999999999988
Q ss_pred EEecC----eEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEe---CCCcEEEEecCCcce--eeeeeeCc-e
Q psy13076 280 AGFDG----KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS---GDKTCKLWDIETKSA--VSEFLMGN-Q 349 (423)
Q Consensus 280 ~s~dg----~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s---~d~~i~iwd~~~~~~--i~~~~~~~-~ 349 (423)
++.++ .|++|+..+++ ...+. .+...+....+ ++|.++++.. .++.|.+||+.+++. ...+.... .
T Consensus 244 ~~~~~~~~~~l~~~~~~~~~-~~~l~--~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 319 (695)
T 2bkl_A 244 YILRGWSENDVYWKRPGEKD-FRLLV--KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSS 319 (695)
T ss_dssp EEEETTTEEEEEEECTTCSS-CEEEE--ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSS
T ss_pred EEeCCCCceEEEEEcCCCCc-eEEee--cCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCC
Confidence 88776 78888765544 23332 23445566666 6666444433 257899999977642 22332221 2
Q ss_pred eEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccC-CCceeEEEecCCCCeEE----EecCCCcEEEeeCCC
Q psy13076 350 VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGH-NKPITALALSPDRGTVF----TGSHDGFITRWNAKT 423 (423)
Q Consensus 350 ~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h-~~~v~~i~~sp~~~~l~----s~s~D~~i~~W~~~~ 423 (423)
.....+... ++..+++...++..++|.........+.+..+ ...|..++++|+++.|+ +....++|++||+.+
T Consensus 320 ~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 320 ASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST 397 (695)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 122223333 56666777888887777655323334555554 66788999999998776 344568899999754
No 185
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.65 E-value=3.3e-12 Score=113.99 Aligned_cols=280 Identities=9% Similarity=0.020 Sum_probs=179.2
Q ss_pred CCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecC
Q psy13076 129 EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSET 208 (423)
Q Consensus 129 ~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~ 208 (423)
.+...+.++.++|+|.+.++...++.|.+||.. ++.. ..........+..+++++++...++.. .... ...+..+
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~-i~~~~~~- 86 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGEVWFTEN-AANK-IGRITKK- 86 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSCEEEEET-TTTE-EEEECTT-
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCCEEEeCC-CCCe-EEEECCC-
Confidence 345678999999999988877778899999987 4322 222222345688999999988655432 2222 2233332
Q ss_pred Ccceec--ccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeE
Q psy13076 209 GTSVGE--ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKV 286 (423)
Q Consensus 209 ~~~~~~--~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i 286 (423)
+. ... +......+..+.+.+++.. .++...++.+..|+................+..++++|+|.++++...++.|
T Consensus 87 g~-~~~~~~~~~~~~~~~i~~~~~g~l-~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 164 (299)
T 2z2n_A 87 GI-IKEYTLPNPDSAPYGITEGPNGDI-WFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAI 164 (299)
T ss_dssp SC-EEEEECSSTTCCEEEEEECTTSCE-EEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred Cc-EEEEeCCCcCCCceeeEECCCCCE-EEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEE
Confidence 22 222 2224456788999987753 5555567889999863222222222334568899999999888777677899
Q ss_pred EEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeC-ceeEeeEEEEEecCcEEE
Q psy13076 287 FLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMG-NQVEDQQVSCLWQGDYLL 365 (423)
Q Consensus 287 ~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~l~ 365 (423)
..||. +++... +........+.+++++++|++.++...++.|.+||. +++. ..+... .......+...++|...+
T Consensus 165 ~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v 240 (299)
T 2z2n_A 165 GRITE-SGDITE-FKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI-TEFKIPTPNARPHAITAGAGIDLWF 240 (299)
T ss_dssp EEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-EEEECSSTTCCEEEEEECSTTCEEE
T ss_pred EEEcC-CCcEEE-eeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE-EEEECCCCCCCceeEEECCCCCEEE
Confidence 99998 655432 211223456889999999998887777889999998 6553 233221 112233455556777555
Q ss_pred EEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076 366 TVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 422 (423)
Q Consensus 366 ~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~ 422 (423)
+...++.|..++.. ..........+...+.++++ +++++.++.+. +.+..++++
T Consensus 241 ~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~-~~l~~~~~~ 294 (299)
T 2z2n_A 241 TEWGANKIGRLTSN-NIIEEYPIQIKSAEPHGICF-DGETIWFAMEC-DKIGKLTLI 294 (299)
T ss_dssp EETTTTEEEEEETT-TEEEEEECSSSSCCEEEEEE-CSSCEEEEETT-TEEEEEEEC
T ss_pred eccCCceEEEECCC-CceEEEeCCCCCCccceEEe-cCCCEEEEecC-CcEEEEEcC
Confidence 55577899999973 22111223455678999999 99888887664 455555543
No 186
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.65 E-value=2.6e-13 Score=123.31 Aligned_cols=271 Identities=9% Similarity=0.005 Sum_probs=175.7
Q ss_pred ccceEEEEeccCCCCceeec-c---c--ccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEe
Q psy13076 24 LSGFISYLDVNNPSTPIRVI-K---G--HNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLG 97 (423)
Q Consensus 24 ~dg~i~~~d~~~~~~~~~~~-~---g--h~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~ 97 (423)
.++.|.++|..+.. ....+ . + .......+.+. ++++.++...+++|.+||.++++++..+.
T Consensus 15 ~~~~l~~~d~~t~~-~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~----------- 81 (328)
T 3dsm_A 15 SNATLSYYDPATCE-VENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT----------- 81 (328)
T ss_dssp CCBEEEEEETTTTE-EECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-----------
T ss_pred CCceEEEEECCCCE-EhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-----------
Confidence 38999999987633 22222 1 1 12345677775 35566777778999999999876654331
Q ss_pred eCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecC---C
Q psy13076 98 GDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHP---I 174 (423)
Q Consensus 98 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---~ 174 (423)
.......++++|+++..++...++.|.+||..+.+......... .
T Consensus 82 --------------------------------~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~ 129 (328)
T 3dsm_A 82 --------------------------------GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDME 129 (328)
T ss_dssp --------------------------------CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTT
T ss_pred --------------------------------CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcccc
Confidence 01235677888888555555478999999998776543333221 0
Q ss_pred CCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCC----------CeE
Q psy13076 175 GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSED----------NTI 244 (423)
Q Consensus 175 ~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d----------~~i 244 (423)
......+++ ++..+.++..+......+++..+++.+..+... .....+.++|++.. ++++..+ +.+
T Consensus 130 ~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l-~v~~~~~~~~~~~~~~~~~v 205 (328)
T 3dsm_A 130 SGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKM-WTITDGGYEGSPYGYEAPSL 205 (328)
T ss_dssp TCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEE-EEEBCCBCTTCSSCBCCCEE
T ss_pred CCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCE-EEEECCCccCCccccCCceE
Confidence 013456777 456666655432334566777776665555432 23567888888764 4444443 789
Q ss_pred EEEcCCCceeeeecccc-ccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECC-CCCeEE
Q psy13076 245 AVFEGPPFKFKMTKQEH-SRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP-DGTQLL 322 (423)
Q Consensus 245 ~~~~~~~~~~~~~~~~~-~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~ 322 (423)
.++|....+........ ......++++|+++++.++.. .|.+||..+++...............+++++| +++..+
T Consensus 206 ~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyv 283 (328)
T 3dsm_A 206 YRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYV 283 (328)
T ss_dssp EEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEE
T ss_pred EEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEE
Confidence 99998776655443321 235789999999998887654 89999998877542211111235688999999 566666
Q ss_pred EE----eCCCcEEEEecCCcceeeeeee
Q psy13076 323 TA----SGDKTCKLWDIETKSAVSEFLM 346 (423)
Q Consensus 323 s~----s~d~~i~iwd~~~~~~i~~~~~ 346 (423)
+. ..++.|.+||.. ++.+.++..
T Consensus 284 a~~~~y~~~~~V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 284 ADAIDYQQQGIVYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp EECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred EcccccccCCEEEEECCC-CCEEEEEEe
Confidence 66 678899999998 887777643
No 187
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.65 E-value=2.9e-13 Score=123.24 Aligned_cols=273 Identities=10% Similarity=0.047 Sum_probs=166.3
Q ss_pred CceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccc
Q psy13076 48 KPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIY 127 (423)
Q Consensus 48 ~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 127 (423)
..|.+++|++++..+++.+.++.++.|.-+ ... .+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------------------------------------------~~ 40 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE---PWL------------------------------------------EI 40 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE---EEE------------------------------------------EE
T ss_pred cccceeeecCCccceeEEeecccCcccccc---eeE------------------------------------------EE
Confidence 457788999988888888888999998221 111 11
Q ss_pred cCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec
Q psy13076 128 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE 207 (423)
Q Consensus 128 ~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~ 207 (423)
..+...+..++|+|+|++++++..++.|.+||..+++..... ......+.+++++|+++.+++......
T Consensus 41 ~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~~~~i~~~~dg~l~v~~~~~~~--------- 109 (333)
T 2dg1_A 41 SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF--VSHKANPAAIKIHKDGRLFVCYLGDFK--------- 109 (333)
T ss_dssp ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE--ECSSSSEEEEEECTTSCEEEEECTTSS---------
T ss_pred eccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe--eCCCCCcceEEECCCCcEEEEeCCCCC---------
Confidence 223334678899999998888888999999998766543211 122356778888888764443211100
Q ss_pred CCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeec--cccccCeEEEEECCCCCEEEEEEe---
Q psy13076 208 TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK--QEHSRFVQAVRYSPSGSHFASAGF--- 282 (423)
Q Consensus 208 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~--~~~~~~i~~l~~s~~g~~l~s~s~--- 282 (423)
..+.|.+|+.......... ......+..++++|+|+++++...
T Consensus 110 --------------------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~ 157 (333)
T 2dg1_A 110 --------------------------------STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS 157 (333)
T ss_dssp --------------------------------SCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT
T ss_pred --------------------------------CCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccc
Confidence 0123444443322211111 122346788999999988776653
Q ss_pred ---cCeEEEEECCCccceecccccccCCCeEEEEECCCCCeE-EEEeCCCcEEEEecCC-cceeeeee------eCceeE
Q psy13076 283 ---DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQL-LTASGDKTCKLWDIET-KSAVSEFL------MGNQVE 351 (423)
Q Consensus 283 ---dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~s~s~d~~i~iwd~~~-~~~i~~~~------~~~~~~ 351 (423)
.+.|..++..+++.. .+. .+...+..++|+|+|+.| ++.+.++.|.+||+.+ +..+..+. ......
T Consensus 158 ~~~~~~l~~~~~~~~~~~-~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~ 234 (333)
T 2dg1_A 158 TNPLGGVYYVSPDFRTVT-PII--QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEG 234 (333)
T ss_dssp TBCCEEEEEECTTSCCEE-EEE--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSE
T ss_pred cCCCceEEEEeCCCCEEE-Eee--cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCC
Confidence 356777776554432 221 123457899999999865 4555678999999964 33222211 000012
Q ss_pred eeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCC------CceeEEEecCCCCeEEEecCC
Q psy13076 352 DQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHN------KPITALALSPDRGTVFTGSHD 413 (423)
Q Consensus 352 ~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~------~~v~~i~~sp~~~~l~s~s~D 413 (423)
...+.+.++|...++...++.|.+|+... ..+..+..+. ..+.+++|+||++.|..++.+
T Consensus 235 ~~~i~~d~~G~l~v~~~~~~~v~~~d~~g--~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 235 PDSCCIDSDDNLYVAMYGQGRVLVFNKRG--YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEEEEBTTCCEEEEEETTTEEEEECTTS--CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCceEECCCCCEEEEEcCCCEEEEECCCC--CEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 23355556788777777788999998742 3334443332 368999999998776544443
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.64 E-value=1.7e-13 Score=122.65 Aligned_cols=250 Identities=13% Similarity=0.088 Sum_probs=168.2
Q ss_pred CceeecccccCceeEEEEeCCCC-eEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEE
Q psy13076 38 TPIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIR 116 (423)
Q Consensus 38 ~~~~~~~gh~~~V~~l~~~~~~~-~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 116 (423)
..+..+..+..-..+++|+|+++ +++++..++.|..||.+++ . ..
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~~-------------------------------- 63 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-SP-------------------------------- 63 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-EE--------------------------------
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-EE--------------------------------
Confidence 34455666677788999999998 8889999999999998764 1 11
Q ss_pred ecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeee-c-CCCCCeeEEEECCCCCeEEEEE
Q psy13076 117 NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF-H-PIGGPIKDIAWSPDNQRMVVVG 194 (423)
Q Consensus 117 ~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~-~~~~~v~~v~~s~~~~~~~~~~ 194 (423)
+..+...+..++++|+|+++++...++.|.+||..+++....... . .....+..++++|+|+.+++..
T Consensus 64 ----------~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~ 133 (296)
T 3e5z_A 64 ----------EMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDP 133 (296)
T ss_dssp ----------EESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEEC
T ss_pred ----------EECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECC
Confidence 112334578899999999888887788999999866654321111 1 1123467899999998766532
Q ss_pred c--C-----------CceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC-Ccee---eee
Q psy13076 195 E--G-----------RERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP-PFKF---KMT 257 (423)
Q Consensus 195 ~--~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~-~~~~---~~~ 257 (423)
. . ......++..+.......+......++.++|+|++..+ ++.+.++.|.+|+.. ...+ ...
T Consensus 134 ~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~ 212 (296)
T 3e5z_A 134 TYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVH 212 (296)
T ss_dssp SHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEE
T ss_pred ccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeE
Confidence 0 0 00112445444433344444555667899999999875 888888999999864 2222 112
Q ss_pred ccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEE-CCCCCeEEEEeCCCcEEEEecC
Q psy13076 258 KQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW-KPDGTQLLTASGDKTCKLWDIE 336 (423)
Q Consensus 258 ~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~-~~~~~~l~s~s~d~~i~iwd~~ 336 (423)
...+...+..++++++|++.++. ++.|.+|+.. ++.+..+.. +.. +.+++| .|+++.|.+++.++ +.-++.+
T Consensus 213 ~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~--~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~ 285 (296)
T 3e5z_A 213 FTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLT--PQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETN 285 (296)
T ss_dssp ECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEEC--SSC-CCEEEEESTTSCEEEEEETTE-EEEEECS
T ss_pred eeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEEC--CCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcc
Confidence 22344456789999999876665 8899999975 666655542 444 889999 68999888888764 4444555
Q ss_pred Ccc
Q psy13076 337 TKS 339 (423)
Q Consensus 337 ~~~ 339 (423)
+++
T Consensus 286 ~~~ 288 (296)
T 3e5z_A 286 VRG 288 (296)
T ss_dssp CCB
T ss_pred ccc
Confidence 543
No 189
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.64 E-value=2e-13 Score=124.97 Aligned_cols=257 Identities=13% Similarity=0.135 Sum_probs=159.2
Q ss_pred eEEEEEECCCCCEEEEEc---------cCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC-ceeeE
Q psy13076 133 AVNVAKYSPSGFYIASGD---------ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR-ERFGH 202 (423)
Q Consensus 133 ~i~~~~~sp~~~~l~s~~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~-~~~~~ 202 (423)
.+...++ ||++++... .++.|.+||+.+++... + ..+..++|+|||+.++.+.... .....
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---l----~~~~~~~~SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF---I----ENATMPRISPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE---E----ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE---c----ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence 4566667 888887642 35679999988765422 1 3477899999999998876542 11223
Q ss_pred EEe--ecCCcceecccCCCcceeEEEEecCCCeeEEEEeC--------------------------CCeEEEEcCCCcee
Q psy13076 203 VFM--SETGTSVGEISGQSKPINSCDFKPSRPFRIITGSE--------------------------DNTIAVFEGPPFKF 254 (423)
Q Consensus 203 ~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~--------------------------d~~i~~~~~~~~~~ 254 (423)
++. .+.+... .+..... +..+.|+|++..+++++.. ...|++|+....+.
T Consensus 87 l~~~~~~~g~~~-~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 164 (347)
T 2gop_A 87 IWVADLETLSSK-KILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV 164 (347)
T ss_dssp EEEEETTTTEEE-EEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE
T ss_pred EEEEECCCCceE-EEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE
Confidence 443 3344332 2322233 8899999999875544432 25688888766554
Q ss_pred eeeccccccCeEEEEECCCCCEEEEEEecC---------eEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEe
Q psy13076 255 KMTKQEHSRFVQAVRYSPSGSHFASAGFDG---------KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS 325 (423)
Q Consensus 255 ~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg---------~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s 325 (423)
...+.. . .+..++|+|+| ++++++.++ .|.++| +++ ...+.. + ..+..+ +|+|++|+.++
T Consensus 165 ~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~--~-~~~~~~--spdg~~l~~~~ 233 (347)
T 2gop_A 165 IEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGK-EEKMFE--K-VSFYAV--DSDGERILLYG 233 (347)
T ss_dssp EEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTE-EEEEEE--E-ESEEEE--EECSSCEEEEE
T ss_pred EeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCc-eEEecc--C-cceeeE--CCCCCEEEEEE
Confidence 122222 3 67889999999 777776542 455555 443 333322 3 444444 99999998877
Q ss_pred CCC--------cEEEEecCCcceeeeeeeCceeEeeE-EEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCcee
Q psy13076 326 GDK--------TCKLWDIETKSAVSEFLMGNQVEDQQ-VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPIT 396 (423)
Q Consensus 326 ~d~--------~i~iwd~~~~~~i~~~~~~~~~~~~~-~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~ 396 (423)
.+. .|.+|| +++. ..+.......... .... +| .+++++.++...+| +.+ .. ...+..+...|.
T Consensus 234 ~~~~~~~~~~~~l~~~d--~~~~-~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~-g~-~~~~~~~~~~v~ 305 (347)
T 2gop_A 234 KPEKKYMSEHNKLYIYD--GKEV-MGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD-GE-IKPIAKGRHWIM 305 (347)
T ss_dssp CCSSSCCCSSCEEEEEC--SSCE-EESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EES-SS-EEEEECSSSEEE
T ss_pred ccccCCccccceEEEEC--CCce-EeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcC-Cc-eEEEecCCCeEE
Confidence 543 577777 4443 2222221112221 2333 55 66778888999998 763 33 344555678899
Q ss_pred EEEecCCCCeEEEecCCCcE-EEeeC
Q psy13076 397 ALALSPDRGTVFTGSHDGFI-TRWNA 421 (423)
Q Consensus 397 ~i~~sp~~~~l~s~s~D~~i-~~W~~ 421 (423)
+++|+| +++++++.++.. ++|..
T Consensus 306 ~~~~s~--~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 306 GFDVDE--IVVYLKETATRLRELFTW 329 (347)
T ss_dssp EEEESS--SEEEEEECSSSCCEEEEE
T ss_pred eeeeeC--cEEEEEcCCCChHHheEe
Confidence 999999 677777777665 77753
No 190
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.63 E-value=1.3e-11 Score=110.02 Aligned_cols=282 Identities=10% Similarity=-0.010 Sum_probs=182.7
Q ss_pred ccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEec-CCeEEEEecCCCc
Q psy13076 44 KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA 122 (423)
Q Consensus 44 ~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~ 122 (423)
..+...+.++++.+++.++++...++.|.+||.. +.............+..+..+++|..++... +..+..++.+ +.
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI 88 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc
Confidence 3455688999999999988888778999999988 5443222111234455677888898887765 5678888875 33
Q ss_pred cccc-ccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceee
Q psy13076 123 ISDI-YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFG 201 (423)
Q Consensus 123 ~~~~-~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~ 201 (423)
.... +......+..+.++|+|.+.++...++.|.+||. +++.. ..........+..+++.+++...++. ..... .
T Consensus 89 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~-~~~~~-i 164 (299)
T 2z2n_A 89 IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-EYELPNKGSYPSFITLGSDNALWFTE-NQNNA-I 164 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECTTSCEEEEE-TTTTE-E
T ss_pred EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-EecCCCCCCCCceEEEcCCCCEEEEe-CCCCE-E
Confidence 2211 2224457889999999998888877889999997 44322 11222223567899999998655543 22222 2
Q ss_pred EEEeecCCcceec-ccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceee-eeccccccCeEEEEECCCCCEEEE
Q psy13076 202 HVFMSETGTSVGE-ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK-MTKQEHSRFVQAVRYSPSGSHFAS 279 (423)
Q Consensus 202 ~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~-~~~~~~~~~i~~l~~s~~g~~l~s 279 (423)
..+.. .+..... +......+..+++.+++.. .++...++.|..|+. ..... .........+..++++++|.++++
T Consensus 165 ~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l-~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 165 GRITE-SGDITEFKIPTPASGPVGITKGNDDAL-WFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEECTTSSE-EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EEEcC-CCcEEEeeCCCCCCcceeEEECCCCCE-EEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEe
Confidence 23333 3322221 2333456778999988763 455556788999987 33332 222334466889999999987666
Q ss_pred EEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076 280 AGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK 338 (423)
Q Consensus 280 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~ 338 (423)
...++.|..||. +++ +..+....+...+.++++ ++|++.++.+ .+.+..+|.+++
T Consensus 242 ~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 242 EWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp ETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred ccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 657789999997 443 233322234567899999 8888877755 556777776654
No 191
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.60 E-value=2.1e-12 Score=113.72 Aligned_cols=242 Identities=11% Similarity=0.025 Sum_probs=154.3
Q ss_pred ceeEEEEeCCCCeEE-EecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccc
Q psy13076 49 PITALALSPDRGTVF-TGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIY 127 (423)
Q Consensus 49 ~V~~l~~~~~~~~l~-sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 127 (423)
...++++++++.+++ +.+.++.|.+||..+...... .......+..+..+++|+.++...+..+.+++.+........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-PFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC-CCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE-eeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeee
Confidence 667899999999887 667889999999876543221 111122344566788888777666678888988765543332
Q ss_pred cCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec
Q psy13076 128 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE 207 (423)
Q Consensus 128 ~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~ 207 (423)
......+..++++|+|++.++...++.|.+|+..+...... .......+..++++|+++.
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--~~~~~~~p~~i~~~~~g~l------------------ 163 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--PFTGLNDPDGVAVDNSGNV------------------ 163 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC--CCCSCCSCCCEEECTTCCE------------------
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee--ccccCCCceeEEEeCCCCE------------------
Confidence 23335788999999999888877788999997544322111 0011123445555555542
Q ss_pred CCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEE
Q psy13076 208 TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVF 287 (423)
Q Consensus 208 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~ 287 (423)
.++...++.|.+|+................+..++++|+|.++++...++.|.
T Consensus 164 ---------------------------~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~ 216 (270)
T 1rwi_B 164 ---------------------------YVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVV 216 (270)
T ss_dssp ---------------------------EEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEE
T ss_pred ---------------------------EEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEE
Confidence 22223344555555433222222122225578899999997777776788999
Q ss_pred EEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcce
Q psy13076 288 LYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSA 340 (423)
Q Consensus 288 vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 340 (423)
+|+........ .. ..+...+.+++++|+|+.+++...++.|++++....+.
T Consensus 217 ~~~~~~~~~~~-~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 217 KLLAGSTTSTV-LP-FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EECTTCSCCEE-CC-CCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred EEcCCCCccee-ec-cCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 99986544322 21 12335689999999999889989999999999876653
No 192
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.60 E-value=1.7e-12 Score=116.07 Aligned_cols=232 Identities=8% Similarity=-0.020 Sum_probs=148.3
Q ss_pred eeEEEEeCC-EEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC
Q psy13076 9 QVSCLWQGD-YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR 87 (423)
Q Consensus 9 ~~~~~~~~~-~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~ 87 (423)
.+++++||+ +++++..++.|+.||..+. ...+..+...+.+++++++++++++...++.|.+||.++++.......
T Consensus 32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~ 108 (296)
T 3e5z_A 32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADS 108 (296)
T ss_dssp EEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECE
T ss_pred CCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeec
Confidence 456666888 7778888999999998753 566777888899999999999988888889999999977764332211
Q ss_pred C---CCCCceEEeeCCCCCeEEEec------------------CCeEEEEecCCCcccccccCCcceEEEEEECCCCCEE
Q psy13076 88 T---QRGQPIVLGGDPKGKNFLYTN------------------GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYI 146 (423)
Q Consensus 88 ~---~~~~~~~~~~~~~~~~~~~~~------------------~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l 146 (423)
. ....+..+..+|+|+.++... ...+..++.+ +.. ..+..+....+.++|+|+++++
T Consensus 109 ~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~l 186 (296)
T 3e5z_A 109 FEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLL 186 (296)
T ss_dssp ETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEE
T ss_pred cCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEE
Confidence 1 111223366788998777521 2245555544 333 2334556677899999999988
Q ss_pred EEEccCCcEEEEEcC-CCce-eEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeE
Q psy13076 147 ASGDISGKVRIWDTV-NKEH-ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINS 224 (423)
Q Consensus 147 ~s~~~d~~i~vwd~~-~~~~-~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 224 (423)
++...++.|.+|++. ++.. .....+...... +..
T Consensus 187 v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~--------------------------------------------p~~ 222 (296)
T 3e5z_A 187 VSDTGDNATHRYCLNARGETEYQGVHFTVEPGK--------------------------------------------TDG 222 (296)
T ss_dssp EEETTTTEEEEEEECSSSCEEEEEEEECCSSSC--------------------------------------------CCS
T ss_pred EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCC--------------------------------------------CCe
Confidence 778888999999986 2222 111111111112 223
Q ss_pred EEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEE-CCCCCEEEEEEecCeEEEEECCCcc
Q psy13076 225 CDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRY-SPSGSHFASAGFDGKVFLYDGASAD 295 (423)
Q Consensus 225 ~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~-s~~g~~l~s~s~dg~i~vwd~~~~~ 295 (423)
+++++++.. . .+. ++.|.+|+.. .+.......+.. +++++| +|+++.|++++.+ .+.-++.++.+
T Consensus 223 i~~d~~G~l-~-v~~-~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~ 288 (296)
T 3e5z_A 223 LRVDAGGLI-W-ASA-GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRG 288 (296)
T ss_dssp EEEBTTSCE-E-EEE-TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCB
T ss_pred EEECCCCCE-E-EEc-CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccc
Confidence 444455542 2 222 6677777754 333333334444 788999 6899988888766 45555655544
No 193
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.59 E-value=1.9e-11 Score=109.05 Aligned_cols=274 Identities=9% Similarity=-0.002 Sum_probs=169.9
Q ss_pred eeeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC
Q psy13076 8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR 87 (423)
Q Consensus 8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~ 87 (423)
..+++.+||.+.++...++.|.++|.. .......+..+...+..+++.+++.++++...++.|..+|.+ +........
T Consensus 23 ~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~ 100 (300)
T 2qc5_A 23 YGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLP 100 (300)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECS
T ss_pred ceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCC
Confidence 345666688888877788999999976 222222233445678899999999988888878999999988 544321111
Q ss_pred CCCCCceEEeeCCCCCeEEEec-CCeEEEEecCCCccccc-ccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCce
Q psy13076 88 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDI-YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 165 (423)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~-~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~ 165 (423)
.....+..+..+++|+.++... +..+..++.+ ++.... +......+..+.+.|+|++.++...++.|..+|. +++.
T Consensus 101 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~ 178 (300)
T 2qc5_A 101 QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKL 178 (300)
T ss_dssp STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcE
Confidence 1223455667778888877765 5678888876 444322 2334467889999999997777766788999987 3332
Q ss_pred eEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEE
Q psy13076 166 ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIA 245 (423)
Q Consensus 166 ~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~ 245 (423)
.. .........+..+++.+++...+ +....+.|.
T Consensus 179 ~~-~~~~~~~~~~~~i~~d~~g~l~v---------------------------------------------~~~~~~~i~ 212 (300)
T 2qc5_A 179 EE-YPLPTNAAAPVGITSGNDGALWF---------------------------------------------VEIMGNKIG 212 (300)
T ss_dssp EE-EECSSTTCCEEEEEECTTSSEEE---------------------------------------------EETTTTEEE
T ss_pred EE-eeCCCCCCCcceEEECCCCCEEE---------------------------------------------EccCCCEEE
Confidence 21 11111123345566665554222 122233444
Q ss_pred EEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEe
Q psy13076 246 VFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS 325 (423)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s 325 (423)
.|+................+..++++++|.+.++...++.|..|+. +++.. .+........+.+++++++|+..++..
T Consensus 213 ~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 213 RITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK 290 (300)
T ss_dssp EECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS
T ss_pred EEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc
Confidence 4443111111111223445788999999987766656789999997 44332 222222345578899999998777655
Q ss_pred CCCcEEEEec
Q psy13076 326 GDKTCKLWDI 335 (423)
Q Consensus 326 ~d~~i~iwd~ 335 (423)
. .|..+|.
T Consensus 291 -~-~i~~~~p 298 (300)
T 2qc5_A 291 -C-KIGKLNL 298 (300)
T ss_dssp -S-EEEEEEE
T ss_pred -C-ceEEeCC
Confidence 4 6666664
No 194
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.57 E-value=1.4e-12 Score=131.87 Aligned_cols=282 Identities=12% Similarity=0.005 Sum_probs=166.3
Q ss_pred EEEEeCCEEEEEeccce---EEEEeccC----CCCceee------cccccCceeEEEEeCCCCeEEEecCC-----CceE
Q psy13076 11 SCLWQGDYLLTVSLSGF---ISYLDVNN----PSTPIRV------IKGHNKPITALALSPDRGTVFTGSHD-----GFIT 72 (423)
Q Consensus 11 ~~~~~~~~~~~~~~dg~---i~~~d~~~----~~~~~~~------~~gh~~~V~~l~~~~~~~~l~sg~~D-----~~i~ 72 (423)
...+||++++-...++. -.+|.... ....... -++|...+..++|||||++|+.++.+ .+|+
T Consensus 113 ~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~ 192 (741)
T 1yr2_A 113 LPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVK 192 (741)
T ss_dssp CCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEE
T ss_pred CCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEE
Confidence 34589999998877654 34454332 1222222 13455578899999999998876544 4699
Q ss_pred EeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccC
Q psy13076 73 RWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS 152 (423)
Q Consensus 73 vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d 152 (423)
+||+++++.+.... +...+..+.|+|| +.|+.++.+
T Consensus 193 v~dl~tg~~~~~~~-------------------------------------------~~~~~~~~~wspD-~~l~~~~~~ 228 (741)
T 1yr2_A 193 FVGVADGKPLADEL-------------------------------------------KWVKFSGLAWLGN-DALLYSRFA 228 (741)
T ss_dssp EEETTTCCEEEEEE-------------------------------------------EEEESCCCEESTT-SEEEEEECC
T ss_pred EEECCCCCCCCccC-------------------------------------------CCceeccEEEECC-CEEEEEEec
Confidence 99998875432100 0001134568888 777776665
Q ss_pred Cc--------------EEEEEcCCCce--eEEeeecCCCCCeeEEEECCCCCeEEEEEcCC---ceeeEEEeecCCc-c-
Q psy13076 153 GK--------------VRIWDTVNKEH--ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR---ERFGHVFMSETGT-S- 211 (423)
Q Consensus 153 ~~--------------i~vwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~-~- 211 (423)
+. |.+|++.+... ............+..+.|+|||++++...... .....+++.+.+. .
T Consensus 229 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 308 (741)
T 1yr2_A 229 EPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGP 308 (741)
T ss_dssp CC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECC
T ss_pred CcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcc
Confidence 43 88999866542 12112111222478899999999988876532 2233444544441 2
Q ss_pred eecccCCCcceeEEEEecCCCeeEEEEeC---CCeEEEEcCCCc--eeeeeccccccCeEEEEECCCCCEEEEEEecCeE
Q psy13076 212 VGEISGQSKPINSCDFKPSRPFRIITGSE---DNTIAVFEGPPF--KFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKV 286 (423)
Q Consensus 212 ~~~~~~~~~~i~~~~~~~~~~~~~~s~s~---d~~i~~~~~~~~--~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i 286 (423)
...+..+....... +.|++..+++.... +..|.+|+.... ........+...+..++++ ++.++++...|+..
T Consensus 309 ~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~ 386 (741)
T 1yr2_A 309 VTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKS 386 (741)
T ss_dssp CEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEE
T ss_pred cEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEE
Confidence 34444433333333 34777764444332 345888886542 2222233444456677777 56678888889987
Q ss_pred EEEECC-CccceecccccccCCCeEEEEECCCCCeEEEE----eCCCcEEEEecCCcc
Q psy13076 287 FLYDGA-SADLVSELGNPAHKGGVYAVAWKPDGTQLLTA----SGDKTCKLWDIETKS 339 (423)
Q Consensus 287 ~vwd~~-~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~----s~d~~i~iwd~~~~~ 339 (423)
++|... +++....+.. .+.+.+..++++|+++.|+.. ...++|.+||+.+++
T Consensus 387 ~l~~~~~~g~~~~~l~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 387 QVLAFDLDGKPAGAVSL-PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEETTSCEEEECBC-SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEeCCCCceeeccC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 766543 3444444432 135668889999998866622 234689999998775
No 195
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.55 E-value=9e-11 Score=104.63 Aligned_cols=279 Identities=8% Similarity=-0.011 Sum_probs=177.0
Q ss_pred cceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCc
Q psy13076 131 SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGT 210 (423)
Q Consensus 131 ~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (423)
...+.++.+.++|++.++...++.|.+||.. ++.. ..........+..+++.+++...++. ..... ...++.. +.
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~-~~~~~-v~~~d~~-g~ 93 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFEVPTPDAKVMCLIVSSLGDIWFTE-NGANK-IGKLSKK-GG 93 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSCEEEEE-TTTTE-EEEECTT-SC
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEECCCCCCcceeEEECCCCCEEEEe-cCCCe-EEEECCC-CC
Confidence 3567889999999988888788999999976 4332 22222223567899999998755543 22222 2333333 32
Q ss_pred ce-ecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceee-eeccccccCeEEEEECCCCCEEEEEEecCeEEE
Q psy13076 211 SV-GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK-MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL 288 (423)
Q Consensus 211 ~~-~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~-~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~v 288 (423)
.. ..+......+..+++.+++.. .++...++.|..++.. .+.. .........+..++++|+|++.++...++.|..
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~g~l-~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 171 (300)
T 2qc5_A 94 FTEYPLPQPDSGPYGITEGLNGDI-WFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR 171 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCE-EEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred eEEecCCCCCCCCccceECCCCCE-EEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence 21 112223456788899887763 5555557889999865 3322 222333456789999999997776666789999
Q ss_pred EECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEe
Q psy13076 289 YDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVS 368 (423)
Q Consensus 289 wd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~ 368 (423)
++. +++... +....+...+.+++++++|+..++....+.|.+||. +++...............+...++|...++..
T Consensus 172 ~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~ 248 (300)
T 2qc5_A 172 ITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEW 248 (300)
T ss_dssp ECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred ECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEecc
Confidence 997 554332 222233456889999999988877767778999998 44432221111112233455556777555555
Q ss_pred CCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076 369 LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 422 (423)
Q Consensus 369 ~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~ 422 (423)
.++.|..++.. .......+......+.++++.|++++.++.. . .|..+|++
T Consensus 249 ~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 249 GANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp TTTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred CCCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 67889999873 2222222333456789999999998777666 4 67777754
No 196
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.55 E-value=6.8e-12 Score=110.79 Aligned_cols=242 Identities=12% Similarity=0.048 Sum_probs=163.2
Q ss_pred CCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCC-cceEEE
Q psy13076 58 DRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEH-SCAVNV 136 (423)
Q Consensus 58 ~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h-~~~i~~ 136 (423)
.+++|++++.|+.|.+||.++++++-.+........-.+...|+|+.++ +.++.+..++. +++.+..+..+ ...+.+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence 4678999999999999999999888777653312233456678998877 66778999998 78888877765 357889
Q ss_pred EEECCCCCEEEEEcc-CCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecc
Q psy13076 137 AKYSPSGFYIASGDI-SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEI 215 (423)
Q Consensus 137 ~~~sp~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (423)
+.+.|+|+++++.+. ++.+..+|. +++.+....... + .
T Consensus 82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~-----------------------------------~-----~ 120 (276)
T 3no2_A 82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFET-----------------------------------G-----I 120 (276)
T ss_dssp EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECC-----------------------------------S-----C
T ss_pred cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccC-----------------------------------C-----C
Confidence 999999999998776 555555553 333322211110 0 0
Q ss_pred cCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCcc
Q psy13076 216 SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD 295 (423)
Q Consensus 216 ~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~ 295 (423)
..+......+...+++.+ +++...++.+..||.. .+...+.... ..+..+...++|..+++++.++.|..+|..+++
T Consensus 121 ~~~~~~~~~v~~~~~G~~-lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 121 ERPHAQFRQINKNKKGNY-LVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNR 197 (276)
T ss_dssp SSGGGSCSCCEECTTSCE-EEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCC
T ss_pred CcccccccCceECCCCCE-EEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCc
Confidence 001112223345556654 6677778889999866 6666555443 234567788999999998888899999999899
Q ss_pred ceecccccc----cCCCeEEEEECCCCCeEEEEeCC--------CcEEEEec-CCcceeeeee
Q psy13076 296 LVSELGNPA----HKGGVYAVAWKPDGTQLLTASGD--------KTCKLWDI-ETKSAVSEFL 345 (423)
Q Consensus 296 ~~~~~~~~~----~~~~i~~l~~~~~~~~l~s~s~d--------~~i~iwd~-~~~~~i~~~~ 345 (423)
.+.++.... ....+.+++..++|+.+++.+.. +..+++++ .+++.+-++.
T Consensus 198 ~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~ 260 (276)
T 3no2_A 198 IVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLN 260 (276)
T ss_dssp EEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred EEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEec
Confidence 877764211 12237888999999999887522 23466666 4566555543
No 197
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.55 E-value=7.1e-12 Score=126.74 Aligned_cols=256 Identities=12% Similarity=0.096 Sum_probs=152.2
Q ss_pred CCcceEEEEEECCCCCEEEEEccC-----CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEE
Q psy13076 129 EHSCAVNVAKYSPSGFYIASGDIS-----GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHV 203 (423)
Q Consensus 129 ~h~~~i~~~~~sp~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~ 203 (423)
+|...+....|||||++||.+..+ .+|++||+.+++.... .... ..+..++|+|| +.++.........
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~--~~~~~~~wspD-~~l~~~~~~~~~~--- 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKW--VKFSGLAWLGN-DALLYSRFAEPKE--- 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEE--EESCCCEESTT-SEEEEEECCCC-----
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCC--ceeccEEEECC-CEEEEEEecCccc---
Confidence 455678899999999999887654 4699999998876432 1111 12356889999 8888765332100
Q ss_pred EeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce----eeeeccccccCeEEEEECCCCCEEEE
Q psy13076 204 FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK----FKMTKQEHSRFVQAVRYSPSGSHFAS 279 (423)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~----~~~~~~~~~~~i~~l~~s~~g~~l~s 279 (423)
+. . +-.......|++|+..+.. +......+...+..+.|||||++|+.
T Consensus 233 -----~~---~--------------------~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~ 284 (741)
T 1yr2_A 233 -----GQ---A--------------------FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVI 284 (741)
T ss_dssp ----------------------------------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred -----cc---c--------------------cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEE
Confidence 00 0 0001112345555543221 22222233345788999999999988
Q ss_pred EEecC-----eEEEEECCCc--cceecccccccCCCeEEEEECCCCCeEEEEeCC----CcEEEEecCCcc-eeeeeeeC
Q psy13076 280 AGFDG-----KVFLYDGASA--DLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD----KTCKLWDIETKS-AVSEFLMG 347 (423)
Q Consensus 280 ~s~dg-----~i~vwd~~~~--~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d----~~i~iwd~~~~~-~i~~~~~~ 347 (423)
.+.++ .|++||..++ +....+. .+........ +|+|+.|+..+.+ +.|.+||+.++. ....+...
T Consensus 285 ~~~~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~ 361 (741)
T 1yr2_A 285 TSSEGTDPVNTVHVARVTNGKIGPVTALI--PDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE 361 (741)
T ss_dssp EEECTTCSCCEEEEEEEETTEECCCEEEE--CSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC
T ss_pred EEEccCCCcceEEEEECCCCCCcccEEec--CCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC
Confidence 88654 8999998776 3133343 2333444443 4899988877764 459999988752 33333322
Q ss_pred ceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEecc-CCCceeEEEecCCCCeEE----EecCCCcEEEeeCC
Q psy13076 348 NQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKG-HNKPITALALSPDRGTVF----TGSHDGFITRWNAK 422 (423)
Q Consensus 348 ~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-h~~~v~~i~~sp~~~~l~----s~s~D~~i~~W~~~ 422 (423)
.......+... ++..+++...++..++|.........+.+.. +...|..++++|+++.|+ +....++|+.||+.
T Consensus 362 ~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 440 (741)
T 1yr2_A 362 SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPA 440 (741)
T ss_dssp CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETT
T ss_pred CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence 22111122222 4555667778887666655422333445544 366789999999998766 33456889999975
Q ss_pred C
Q psy13076 423 T 423 (423)
Q Consensus 423 ~ 423 (423)
+
T Consensus 441 t 441 (741)
T 1yr2_A 441 T 441 (741)
T ss_dssp T
T ss_pred C
Confidence 4
No 198
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.54 E-value=4.1e-12 Score=115.93 Aligned_cols=289 Identities=13% Similarity=0.116 Sum_probs=180.8
Q ss_pred cceeeEEE--EeCCEEEEEec-----cceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEec----------CC
Q psy13076 6 EDQQVSCL--WQGDYLLTVSL-----SGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS----------HD 68 (423)
Q Consensus 6 ~~~~~~~~--~~~~~~~~~~~-----dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~----------~D 68 (423)
++-.++.. ||++.+..+.. ++.|.++|..+ .+.+.++..-..| . ++++|++++|+.++ .+
T Consensus 32 ~~~~~~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t-~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~ 108 (386)
T 3sjl_D 32 DEPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEA-GRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERT 108 (386)
T ss_dssp CCCCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTT-TEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred cccceeeccCCCCCEEEEEcCcccCCCCEEEEEECCC-CeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCC
Confidence 34444444 58988888865 68999999876 4556666644455 4 99999999887765 36
Q ss_pred CceEEeecCCcceeecccCCC------CCCceEEeeCCCCCeEEEec---CCeEEEEecCCCcccccccCCcceEEEEEE
Q psy13076 69 GFITRWNAKTEYIFATLPRTQ------RGQPIVLGGDPKGKNFLYTN---GNSVIIRNIENPAISDIYTEHSCAVNVAKY 139 (423)
Q Consensus 69 ~~i~vW~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~ 139 (423)
+.|.+||.++.++...+.... ...+-.+.++|+|+.++..+ ++.+.+.|+++.+....+.-..+ ...+
T Consensus 109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~ 185 (386)
T 3sjl_D 109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIF 185 (386)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEE
T ss_pred CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceee
Confidence 789999999998877764221 11344577889998877654 47899999998887766542211 1223
Q ss_pred CCCCCEEEEEccCCcEEEEEcCC-CceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCC
Q psy13076 140 SPSGFYIASGDISGKVRIWDTVN-KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ 218 (423)
Q Consensus 140 sp~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (423)
....+.+++.+.||++-+.++.. ++.. ... .. -|.++...+
T Consensus 186 P~g~~~~~~~~~DG~~~~v~~~~~g~v~-~~~-~~--------~~~~~~~~~---------------------------- 227 (386)
T 3sjl_D 186 PTAPDTFFMHCRDGSLAKVAFGTEGTPE-ITH-TE--------VFHPEDEFL---------------------------- 227 (386)
T ss_dssp EEETTEEEEEETTSCEEEEECCSSSCCE-EEE-CC--------CCSCTTSCB----------------------------
T ss_pred cCCCceeEEECCCCCEEEEECCCCCeEE-Eee-cc--------eeccccccc----------------------------
Confidence 22445666777788888888764 2221 100 00 000110000
Q ss_pred CcceeEEEEe-cCCCeeEEEEeCCCeEEEEcCCCce--eeeecc----------ccccCeEEEEECCCCCEEEEEEe---
Q psy13076 219 SKPINSCDFK-PSRPFRIITGSEDNTIAVFEGPPFK--FKMTKQ----------EHSRFVQAVRYSPSGSHFASAGF--- 282 (423)
Q Consensus 219 ~~~i~~~~~~-~~~~~~~~s~s~d~~i~~~~~~~~~--~~~~~~----------~~~~~i~~l~~s~~g~~l~s~s~--- 282 (423)
.....|. +++. ++-.+.++.+++.|..... ...... -.......++++|+++.+.....
T Consensus 228 ---~~~~~~~~~dG~--~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~ 302 (386)
T 3sjl_D 228 ---INHPAYSQKAGR--LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD 302 (386)
T ss_dssp ---CSCCEEETTTTE--EEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECC
T ss_pred ---cccceeEcCCCc--EEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccc
Confidence 0001222 2232 2223446677777653322 111110 01223345778999987766543
Q ss_pred -------cCeEEEEECCCccceecccccccCCCeEEEEECCCCC-eEEE-EeCCCcEEEEecCCcceeeeeee
Q psy13076 283 -------DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGT-QLLT-ASGDKTCKLWDIETKSAVSEFLM 346 (423)
Q Consensus 283 -------dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~s-~s~d~~i~iwd~~~~~~i~~~~~ 346 (423)
.+.|.++|.++++.+.++.. ...+++++++||++ +|++ ...+++|.++|..+++.+++...
T Consensus 303 ~~~hk~~~~~V~viD~~t~kv~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 303 EWRHKTASRFVVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp TTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred ccccCCCCCEEEEEECCCCeEEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence 35799999999999888753 23578999999996 6655 45589999999999998887643
No 199
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.53 E-value=1.3e-11 Score=108.65 Aligned_cols=239 Identities=8% Similarity=-0.001 Sum_probs=151.8
Q ss_pred CeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeee
Q psy13076 177 PIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM 256 (423)
Q Consensus 177 ~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~ 256 (423)
...+++++++++.++++..... ....+.................+..+++.+++.. .++.. ++.|..|+........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l-~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYG-RVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTV-YVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSC-EEEEECC-----EECCCCSCCSCCCEEECTTCCE-EEEET-TTEEEEECTTCSCCEE
T ss_pred CccceEECCCCCEEEEccCCCC-cEEEecCCCcccceEeeCCcCCcceeEECCCCCE-EEEcC-CCEEEEEeCCCceEee
Confidence 4678899999874431322222 2233333222211111223345778899988763 44444 8899999865443322
Q ss_pred eccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecC
Q psy13076 257 TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIE 336 (423)
Q Consensus 257 ~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~ 336 (423)
........+..++++|+|+++++...++.|.+|+..+....... ......+.+++++|+|+++++...++.|.+||..
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~--~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~ 179 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP--FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE 179 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC--CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec--cccCCCceeEEEeCCCCEEEEECCCCEEEEEecC
Confidence 22223356789999999998887777899999976554332211 1223456789999999988887778899999987
Q ss_pred CcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcE
Q psy13076 337 TKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFI 416 (423)
Q Consensus 337 ~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i 416 (423)
.......... .......+...++|..+++...++.|.+|+...... ......+...+.+++++|+++++++.+.++.|
T Consensus 180 ~~~~~~~~~~-~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v 257 (270)
T 1rwi_B 180 SNNQVVLPFT-DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV 257 (270)
T ss_dssp TCCEEECCCS-SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC-EECCCCSCSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred CCceEeeccc-CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc-eeeccCCCCCceeEEECCCCCEEEEECCCCEE
Confidence 7654322111 112233455556776666666788999999865432 22223344678999999999998999999999
Q ss_pred EEeeCC
Q psy13076 417 TRWNAK 422 (423)
Q Consensus 417 ~~W~~~ 422 (423)
++++..
T Consensus 258 ~~~~~~ 263 (270)
T 1rwi_B 258 VKLTSL 263 (270)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 999864
No 200
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.53 E-value=1.1e-10 Score=107.69 Aligned_cols=226 Identities=13% Similarity=0.069 Sum_probs=137.6
Q ss_pred eEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEc----------cCCcEEEEEcCCCceeEEeeec-C----CCC
Q psy13076 112 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD----------ISGKVRIWDTVNKEHILKNEFH-P----IGG 176 (423)
Q Consensus 112 ~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~----------~d~~i~vwd~~~~~~~~~~~~~-~----~~~ 176 (423)
.+.++|..+++....+..-..+ .+.++|||++++.+. .++.|.+||..+.+........ . ...
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~ 125 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP 125 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCC
Confidence 6678888887776655533333 889999999998886 3678999999876554332221 0 012
Q ss_pred CeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceec-ccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceee
Q psy13076 177 PIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE-ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK 255 (423)
Q Consensus 177 ~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~ 255 (423)
....++|+|||++++++.........+++ ++++.+.. +.... ++.+.|.++..+++.+.|+.+.+++. ..+..
T Consensus 126 ~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~ 199 (373)
T 2mad_H 126 YSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAA 199 (373)
T ss_pred CccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEE
Confidence 23578999999999988754334455667 77766655 43221 24455666656777778999988887 44433
Q ss_pred eecc-----ccccC-eEEEEECCCCCEEEEEEecCeEEEEECCCccc--eecccccc--------cCCCeEEEEECCCCC
Q psy13076 256 MTKQ-----EHSRF-VQAVRYSPSGSHFASAGFDGKVFLYDGASADL--VSELGNPA--------HKGGVYAVAWKPDGT 319 (423)
Q Consensus 256 ~~~~-----~~~~~-i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~--------~~~~i~~l~~~~~~~ 319 (423)
.... ....+ .....+.+++..++..+.++.+.+.|...... ...+.... .......++++|+++
T Consensus 200 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~ 279 (373)
T 2mad_H 200 GAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSD 279 (373)
T ss_pred EEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCC
Confidence 1110 11111 12345667766555555788999999865431 12221000 112234477888887
Q ss_pred eEEEEeC----------CCcEEEEecCCcceeeeee
Q psy13076 320 QLLTASG----------DKTCKLWDIETKSAVSEFL 345 (423)
Q Consensus 320 ~l~s~s~----------d~~i~iwd~~~~~~i~~~~ 345 (423)
.|..+.. ++.|.++|..+++.+.++.
T Consensus 280 ~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~ 315 (373)
T 2mad_H 280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS 315 (373)
T ss_pred EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE
Confidence 7666543 3467788887776665543
No 201
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.52 E-value=6.3e-12 Score=114.15 Aligned_cols=260 Identities=13% Similarity=0.083 Sum_probs=170.5
Q ss_pred cCCcEEEEEcCCCceeEEee----ecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEE
Q psy13076 151 ISGKVRIWDTVNKEHILKNE----FHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCD 226 (423)
Q Consensus 151 ~d~~i~vwd~~~~~~~~~~~----~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 226 (423)
.+++|.++|.++++...... ..........+.+. +..+.++... .....+++..+++.+..+. ....+..++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~-~~~v~viD~~t~~~~~~i~-~~~~p~~i~ 90 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNN-SHVIFAIDINTFKEVGRIT-GFTSPRYIH 90 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGG-GTEEEEEETTTCCEEEEEE-CCSSEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcC-CCEEEEEECcccEEEEEcC-CCCCCcEEE
Confidence 47899999988766432110 01223445677774 3445554442 3345667777777777664 345678889
Q ss_pred EecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccc-----cCeEEEEECCCCCEEEEEE--ecCeEEEEECCCccceec
Q psy13076 227 FKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS-----RFVQAVRYSPSGSHFASAG--FDGKVFLYDGASADLVSE 299 (423)
Q Consensus 227 ~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~-----~~i~~l~~s~~g~~l~s~s--~dg~i~vwd~~~~~~~~~ 299 (423)
+++++ ...++...++.|.++|....+......... .....+++ ++..+..+. .++.|.++|..+++...+
T Consensus 91 ~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~ 167 (328)
T 3dsm_A 91 FLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDE 167 (328)
T ss_dssp EEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEE
T ss_pred EeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEE
Confidence 98887 434444478999999988776654333222 13445666 344554444 488999999999887766
Q ss_pred ccccccCCCeEEEEECCCCCeEEEEeCC----------CcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeC
Q psy13076 300 LGNPAHKGGVYAVAWKPDGTQLLTASGD----------KTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSL 369 (423)
Q Consensus 300 ~~~~~~~~~i~~l~~~~~~~~l~s~s~d----------~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~ 369 (423)
+.. ......++++|+|++++++..+ +.|.++|..+++....+..........+.+.++++.+.++..
T Consensus 168 i~~---g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 168 LTI---GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN 244 (328)
T ss_dssp EEC---SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred EEc---CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence 642 2335678999999988887665 789999999888776654322123445666778888877654
Q ss_pred CCcEEEEecCCCCCceE-EeccCCCceeEEEecC-CCCeEEEe----cCCCcEEEeeCC
Q psy13076 370 SGFISYLDVNNPSTPIR-VIKGHNKPITALALSP-DRGTVFTG----SHDGFITRWNAK 422 (423)
Q Consensus 370 ~~~i~~~~~~~~~~~~~-~~~~h~~~v~~i~~sp-~~~~l~s~----s~D~~i~~W~~~ 422 (423)
.+..+|..+...... .+..+......++++| +++++++. ..++.|.+||.+
T Consensus 245 --~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 245 --DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp --SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred --EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 899999876543211 1122246688999999 55566676 678999999864
No 202
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.51 E-value=1.3e-11 Score=108.88 Aligned_cols=168 Identities=10% Similarity=0.023 Sum_probs=115.6
Q ss_pred eCCEEEEEeccceEEEEeccCCCCceeeccccc-CceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCc
Q psy13076 15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHN-KPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQP 93 (423)
Q Consensus 15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~-~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~ 93 (423)
+|++|++++.|+.|.+||..+ .+.+-.+..|. ..+.++++.|+|++|++ .++.|+.||. +++++-.+........
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~t-G~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDT-KEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTT-TEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCC-CeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 478999999999999999866 45566777665 57899999999999884 5788999999 6776666543222233
Q ss_pred eEEeeCCCCCeEEEecC--CeEEEEecCCCccccccc------CCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCce
Q psy13076 94 IVLGGDPKGKNFLYTNG--NSVIIRNIENPAISDIYT------EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 165 (423)
Q Consensus 94 ~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~------~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~ 165 (423)
..+...++|+.++...+ ..+..++. +++....+. ++......+.+.++|.++++...++.|..||.+ ++.
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~ 157 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL 157 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence 34567788988887654 34555554 454443332 222344556788999999999999999999987 776
Q ss_pred eEEeeecCCCCCeeEEEECCCCCeEE
Q psy13076 166 ILKNEFHPIGGPIKDIAWSPDNQRMV 191 (423)
Q Consensus 166 ~~~~~~~~~~~~v~~v~~s~~~~~~~ 191 (423)
++..... ....++.+.+++..++
T Consensus 158 ~w~~~~~---~~~~~~~~~~~g~~~v 180 (276)
T 3no2_A 158 LNSVKLS---GTPFSSAFLDNGDCLV 180 (276)
T ss_dssp EEEEECS---SCCCEEEECTTSCEEE
T ss_pred EEEEECC---CCccceeEcCCCCEEE
Confidence 6554332 2334555566655444
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.50 E-value=4.4e-11 Score=107.59 Aligned_cols=244 Identities=10% Similarity=0.067 Sum_probs=152.6
Q ss_pred ccccCceeEEEEeCCCCeEEE-------ecCCCceEEeecCCcceeecccC---CCCCCceEEeeCCC-CCeEEEecCCe
Q psy13076 44 KGHNKPITALALSPDRGTVFT-------GSHDGFITRWNAKTEYIFATLPR---TQRGQPIVLGGDPK-GKNFLYTNGNS 112 (423)
Q Consensus 44 ~gh~~~V~~l~~~~~~~~l~s-------g~~D~~i~vW~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~ 112 (423)
.+.-....+++|++++.++++ +..++.|.+||..+++....... .....+..+..+++ |+.++...+..
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~ 93 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLG 93 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTE
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCC
Confidence 334456679999999998888 77889999999887765322110 01234556778888 77777776678
Q ss_pred EEEEecCCCccccc-cc---C-CcceEEEEEECCCCCEEEEEccC---------------CcEEEEEcCCCceeEEeeec
Q psy13076 113 VIIRNIENPAISDI-YT---E-HSCAVNVAKYSPSGFYIASGDIS---------------GKVRIWDTVNKEHILKNEFH 172 (423)
Q Consensus 113 ~~i~~~~~~~~~~~-~~---~-h~~~i~~~~~sp~~~~l~s~~~d---------------~~i~vwd~~~~~~~~~~~~~ 172 (423)
+.+++.+ ++.... .. + +...+..++++|+|++.++...+ +.|..+|.. ++......
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-- 169 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-- 169 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE--
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc--
Confidence 8889887 665443 22 1 12457899999999888877654 345555543 22211100
Q ss_pred CCCCCeeEEEEC----CCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEc
Q psy13076 173 PIGGPIKDIAWS----PDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE 248 (423)
Q Consensus 173 ~~~~~v~~v~~s----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~ 248 (423)
.......++|+ |+++.+.++. ..++.|.+|+
T Consensus 170 -~~~~~~~i~~~~~~d~dg~~l~v~~--------------------------------------------~~~~~i~~~~ 204 (314)
T 1pjx_A 170 -AFQFPNGIAVRHMNDGRPYQLIVAE--------------------------------------------TPTKKLWSYD 204 (314)
T ss_dssp -EESSEEEEEEEECTTSCEEEEEEEE--------------------------------------------TTTTEEEEEE
T ss_pred -CCCCcceEEEecccCCCCCEEEEEE--------------------------------------------CCCCeEEEEE
Confidence 01223455666 6555443332 2233344443
Q ss_pred CC-Cce-----eeeeccccc-cCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeE
Q psy13076 249 GP-PFK-----FKMTKQEHS-RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQL 321 (423)
Q Consensus 249 ~~-~~~-----~~~~~~~~~-~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l 321 (423)
.. ..+ .......+. ..+..++++++|.++++...++.|..||..+++....+. .+...+.+++|+|+++.|
T Consensus 205 ~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~--~~~~~~~~i~~~~dg~~l 282 (314)
T 1pjx_A 205 IKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR--CPFEKPSNLHFKPQTKTI 282 (314)
T ss_dssp EEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE--CSSSCEEEEEECTTSSEE
T ss_pred CCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe--CCCCCceeEEECCCCCEE
Confidence 21 010 011111222 346779999999988887788999999988676655543 244678999999999954
Q ss_pred -EEEeCCCcEEEEecCCc
Q psy13076 322 -LTASGDKTCKLWDIETK 338 (423)
Q Consensus 322 -~s~s~d~~i~iwd~~~~ 338 (423)
++...++.|..|++...
T Consensus 283 ~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 283 FVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEETTTTEEEEEECSSC
T ss_pred EEEeCCCCeEEEEeCCCC
Confidence 55556678999998653
No 204
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.48 E-value=3.5e-10 Score=104.27 Aligned_cols=285 Identities=13% Similarity=0.024 Sum_probs=171.3
Q ss_pred EeCCEEEEEec--cc---eEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEec----------CCCceEEeecCC
Q psy13076 14 WQGDYLLTVSL--SG---FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS----------HDGFITRWNAKT 78 (423)
Q Consensus 14 ~~~~~~~~~~~--dg---~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~----------~D~~i~vW~~~~ 78 (423)
+|++++..+.. .+ .|.++|..+ .+.+.++..-..+ .++++||+++|+.+. .++.|.++|..+
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t-~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGS-GSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCC-CeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 68888887764 22 889999876 4455566544445 899999999888775 378899999998
Q ss_pred cceeecccCC-C-----CCCceEEeeCCCCCeEEEec---CCeEEEEecCCCccccc-ccCCcceEEEEEECCCC-CEEE
Q psy13076 79 EYIFATLPRT-Q-----RGQPIVLGGDPKGKNFLYTN---GNSVIIRNIENPAISDI-YTEHSCAVNVAKYSPSG-FYIA 147 (423)
Q Consensus 79 ~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~-~~~h~~~i~~~~~sp~~-~~l~ 147 (423)
.+....+... . ...+-.+..+|+|+.++..+ .+.+.+.| ++++.... +.-. .. +.+.|++ +.++
T Consensus 107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~~---~~~~~~~~~~~~ 181 (373)
T 2mad_H 107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-TC---YHIHPGAPSTFY 181 (373)
T ss_pred CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-ce---EEEEeCCCceEE
Confidence 7766654321 0 11234577899999887754 36788899 88877666 4322 12 3344544 4556
Q ss_pred EEccCCcEEEEEcCCCceeEEeee---cCCCCCe-eEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCccee
Q psy13076 148 SGDISGKVRIWDTVNKEHILKNEF---HPIGGPI-KDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPIN 223 (423)
Q Consensus 148 s~~~d~~i~vwd~~~~~~~~~~~~---~~~~~~v-~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 223 (423)
+.+.|+.+.++|. +.+....... .....++ ....+.+++..++..+... ...+.+.....
T Consensus 182 ~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~v~vid~~~~~------------- 245 (373)
T 2mad_H 182 LLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSG--KILQADISAAG------------- 245 (373)
T ss_pred EEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCc--eEEEEeccCCc-------------
Confidence 6778999999999 6654421110 0001111 1234455544433332111 11111110000
Q ss_pred EEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEe----------cCeEEEEECCC
Q psy13076 224 SCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGF----------DGKVFLYDGAS 293 (423)
Q Consensus 224 ~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~----------dg~i~vwd~~~ 293 (423)
. .+ +.-|+....... ...-.......++++|+++.+..+.. ++.|.++|..+
T Consensus 246 --------~-~v--------~~~~~~~~~~~~-~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t 307 (373)
T 2mad_H 246 --------A-TN--------KAPIDALSGGRK-ADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV 307 (373)
T ss_pred --------c-eE--------eeeeeecCCccc-ccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC
Confidence 0 00 001111000000 00001122344778999987766543 35799999999
Q ss_pred ccceecccccccCCCeEEEEECCCCC-eEEEEe-CCCcEEEEecCCcceeee
Q psy13076 294 ADLVSELGNPAHKGGVYAVAWKPDGT-QLLTAS-GDKTCKLWDIETKSAVSE 343 (423)
Q Consensus 294 ~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~s~s-~d~~i~iwd~~~~~~i~~ 343 (423)
++.+.++.. .....+++|+|||+ +|+++. .+++|.++|..+++.+.+
T Consensus 308 ~~vv~~i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 308 GQTSSQISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CEEEEEEEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 998887743 23578999999999 777776 589999999999988766
No 205
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.43 E-value=2.2e-10 Score=104.51 Aligned_cols=296 Identities=15% Similarity=0.152 Sum_probs=186.0
Q ss_pred eeCCCCCeEEEec------CCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEc----------cCCcEEEEEc
Q psy13076 97 GGDPKGKNFLYTN------GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD----------ISGKVRIWDT 160 (423)
Q Consensus 97 ~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~----------~d~~i~vwd~ 160 (423)
...|++..++..+ .+.+.+.|..+.+....+..-..+ . +.++|||++++.++ .++.|.+||.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 4467777666543 347888999888887766543444 4 99999999887765 3678999999
Q ss_pred CCCceeEEeeecC-----CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeE
Q psy13076 161 VNKEHILKNEFHP-----IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRI 235 (423)
Q Consensus 161 ~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 235 (423)
.+.+......... .......++|+|||+++++..........+++..+.+.+..+..... ....|.+...+
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~----~~~~P~g~~~~ 192 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC----YHIFPTAPDTF 192 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEE
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc----ceeecCCCcee
Confidence 9877655443321 11234679999999999887654344456777777777666643221 12234444456
Q ss_pred EEEeCCCeEEEEcCCC-ceeeeecccc----ccCe-EEEEE-CCCCCEEEEEEecCeEEEEECCCcc--ceeccc-----
Q psy13076 236 ITGSEDNTIAVFEGPP-FKFKMTKQEH----SRFV-QAVRY-SPSGSHFASAGFDGKVFLYDGASAD--LVSELG----- 301 (423)
Q Consensus 236 ~s~s~d~~i~~~~~~~-~~~~~~~~~~----~~~i-~~l~~-s~~g~~l~s~s~dg~i~vwd~~~~~--~~~~~~----- 301 (423)
++.+.||.+.+.+... .+........ ...+ ....| .++|++++ .+.+|.|.+.|..+.. ....+.
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~ 271 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEA 271 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHH
T ss_pred EEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccc
Confidence 6777888887777543 3321111111 1111 12345 46776554 5668999999986554 222221
Q ss_pred ---ccccCCCeEEEEECCCCCeEEEEeC----------CCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCc-EEEEE
Q psy13076 302 ---NPAHKGGVYAVAWKPDGTQLLTASG----------DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGD-YLLTV 367 (423)
Q Consensus 302 ---~~~~~~~i~~l~~~~~~~~l~s~s~----------d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~-~l~~~ 367 (423)
..-..+....++++|+++.|..... ..+|-+.|+++++.++++..+. ....+.+.++++ .|.+.
T Consensus 272 ~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~t 349 (386)
T 3sjl_D 272 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYAL 349 (386)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEE
T ss_pred cccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEE
Confidence 0001223345788999988877643 2579999999999998886653 334566778886 55554
Q ss_pred e-CCCcEEEEecCCCCCceEEeccCCCceeEEEecCC
Q psy13076 368 S-LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPD 403 (423)
Q Consensus 368 ~-~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~ 403 (423)
. .++.+.++|..+.+ .++.+.. .+.-+.+.+++|
T Consensus 350 n~~~~~VsViD~~t~k-~~~~i~~-~~~p~~l~~s~d 384 (386)
T 3sjl_D 350 STGDKTLYIHDAESGE-ELRSVNQ-LGHGPQVITTAD 384 (386)
T ss_dssp ETTTTEEEEEETTTCC-EEEEECC-CCSSCCEEEECC
T ss_pred cCCCCeEEEEECCCCc-EEEEecC-CCCCceeEECCc
Confidence 4 58899999998864 3444332 122445566655
No 206
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.41 E-value=9.7e-11 Score=108.79 Aligned_cols=280 Identities=10% Similarity=0.024 Sum_probs=170.0
Q ss_pred eCCEEEEEecc-----ceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEec----------CCCceEEeecCCc
Q psy13076 15 QGDYLLTVSLS-----GFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS----------HDGFITRWNAKTE 79 (423)
Q Consensus 15 ~~~~~~~~~~d-----g~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~----------~D~~i~vW~~~~~ 79 (423)
|++.+..+... +.|.++|+.+ .+.+.++.--..| .++++||+++|+.+. .++.|.++|..+.
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t-~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGST-GRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTT-TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCC-CEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 67766666553 7999999976 4555566543456 799999999887775 4678999999987
Q ss_pred ceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEcc--CCcEEE
Q psy13076 80 YIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI--SGKVRI 157 (423)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~--d~~i~v 157 (423)
++...+..... +.. . .-.....+.|+|||++++.+.. ++.|.+
T Consensus 160 ~vv~~I~v~g~------------------------------~r~---~--~g~~P~~~~~spDGk~lyV~n~~~~~~VsV 204 (426)
T 3c75_H 160 LPIADIELPDA------------------------------PRF---L--VGTYQWMNALTPDNKNLLFYQFSPAPAVGV 204 (426)
T ss_dssp CEEEEEEETTC------------------------------CCC---C--BSCCGGGSEECTTSSEEEEEECSSSCEEEE
T ss_pred cEEEEEECCCc------------------------------ccc---c--cCCCcceEEEcCCCCEEEEEecCCCCeEEE
Confidence 76654421000 000 0 0001124579999999998874 578999
Q ss_pred EEcCCCceeEEeeecCC-----CCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcce-eEEEEecCC
Q psy13076 158 WDTVNKEHILKNEFHPI-----GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPI-NSCDFKPSR 231 (423)
Q Consensus 158 wd~~~~~~~~~~~~~~~-----~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~ 231 (423)
.|..+.+.......... .+.-.-+.++++|+.+++..... ..... .+ ..+.....++ ....+.+++
T Consensus 205 ID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~-~v~~~---~~----~~~~v~~~p~~~~~~~~~dg 276 (426)
T 3c75_H 205 VDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADG-ETKVT---NT----EVFHTEDELLINHPAFSLRS 276 (426)
T ss_dssp EETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTT-CCEEE---EC----CCCSCTTSCBCSCCEECTTT
T ss_pred EECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCC-cEEEE---ee----eeeccCCCceeeEeeecCCC
Confidence 99988776544332110 00011245556665544433111 11000 00 0111111111 234566766
Q ss_pred CeeEEEEeCCCeEEEEcCCCceeee--ecc-------c---cccCeEEEEECCCCCEEEEEEe----------cCeEEEE
Q psy13076 232 PFRIITGSEDNTIAVFEGPPFKFKM--TKQ-------E---HSRFVQAVRYSPSGSHFASAGF----------DGKVFLY 289 (423)
Q Consensus 232 ~~~~~s~s~d~~i~~~~~~~~~~~~--~~~-------~---~~~~i~~l~~s~~g~~l~s~s~----------dg~i~vw 289 (423)
...+ ..+..+.+.+.|........ ... . .......++++|+++.+..+.. ++.|.++
T Consensus 277 ~~~~-~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVI 355 (426)
T 3c75_H 277 GRLV-WPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVL 355 (426)
T ss_dssp CEEE-EEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred CEEE-EEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEE
Confidence 5433 34567888888864322111 000 0 0111223689999987766543 4579999
Q ss_pred ECCCccceecccccccCCCeEEEEECCCCC-eEEEEe-CCCcEEEEecCCcceeeee
Q psy13076 290 DGASADLVSELGNPAHKGGVYAVAWKPDGT-QLLTAS-GDKTCKLWDIETKSAVSEF 344 (423)
Q Consensus 290 d~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~s~s-~d~~i~iwd~~~~~~i~~~ 344 (423)
|..+.+.+.++... ....+++|+|||+ +|+++. .+++|.++|..+++.++++
T Consensus 356 D~~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 356 NAETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp ETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ECCCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 99999988887532 2478999999998 888877 5999999999999988775
No 207
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.41 E-value=3.8e-10 Score=100.85 Aligned_cols=231 Identities=10% Similarity=0.093 Sum_probs=150.3
Q ss_pred CceeEEEEeCC-CCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCccccc
Q psy13076 48 KPITALALSPD-RGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDI 126 (423)
Q Consensus 48 ~~V~~l~~~~~-~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 126 (423)
.--.+..|+++ +.++++...++.|..||.+++.... +.
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------------------~~--------- 51 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR--------------------------------VT--------- 51 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--------------------------------EE---------
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE--------------------------------Ee---------
Confidence 34457889985 5577788888999999987653210 00
Q ss_pred ccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeec--CCCCCeeEEEECCCCCeEEEEEcCC-------
Q psy13076 127 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH--PIGGPIKDIAWSPDNQRMVVVGEGR------- 197 (423)
Q Consensus 127 ~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~~~~~~~~~------- 197 (423)
....+.+++++|+|+++++. +..|.+||.++++........ .....+++++++|+|+..+......
T Consensus 52 ---~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~ 126 (297)
T 3g4e_A 52 ---MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLE 126 (297)
T ss_dssp ---CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCC
T ss_pred ---CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCccccccccc
Confidence 12357788999999966654 568999998766533221111 1123478899999999665443211
Q ss_pred ceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcC--CCcee-----eeeccccccCeEEEEE
Q psy13076 198 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEG--PPFKF-----KMTKQEHSRFVQAVRY 270 (423)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~--~~~~~-----~~~~~~~~~~i~~l~~ 270 (423)
...+.++..+.......+.......+.++|+|++..+.++.+.++.|..|+. ....+ ..........+..+++
T Consensus 127 ~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~ 206 (297)
T 3g4e_A 127 RHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCI 206 (297)
T ss_dssp TTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEE
T ss_pred CCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEE
Confidence 1123455444332333333333456789999999876777778899999974 22221 1122223345788999
Q ss_pred CCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEEC-CCCCeEEEEeC
Q psy13076 271 SPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWK-PDGTQLLTASG 326 (423)
Q Consensus 271 s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~l~s~s~ 326 (423)
+++|.+.++...++.|..||..+++.+..+.. +...+++++|. |+++.|..++.
T Consensus 207 d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~--p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 207 DAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL--PVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp BTTSCEEEEEETTTEEEEECTTTCCEEEEEEC--SSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC--CCCCceEEEEeCCCCCEEEEEcC
Confidence 99998777777788899999988887776643 34578999998 88876655543
No 208
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.41 E-value=4.6e-10 Score=100.83 Aligned_cols=238 Identities=12% Similarity=0.107 Sum_probs=143.9
Q ss_pred eEEEEEECCCCCEEEE-------EccCCcEEEEEcCCCceeEEee--ecCCCCCeeEEEECCC-CCeEEEEEcCCceeeE
Q psy13076 133 AVNVAKYSPSGFYIAS-------GDISGKVRIWDTVNKEHILKNE--FHPIGGPIKDIAWSPD-NQRMVVVGEGRERFGH 202 (423)
Q Consensus 133 ~i~~~~~sp~~~~l~s-------~~~d~~i~vwd~~~~~~~~~~~--~~~~~~~v~~v~~s~~-~~~~~~~~~~~~~~~~ 202 (423)
....++|++++.+.++ ...++.|.+||..+++...... .......+..++++++ +..++ +
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~--------- 88 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-A--------- 88 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-E---------
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-E---------
Confidence 4568889999988887 5678899999976655321110 0001133556666665 33222 1
Q ss_pred EEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeee-c----cccccCeEEEEECCCCCEE
Q psy13076 203 VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT-K----QEHSRFVQAVRYSPSGSHF 277 (423)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~-~----~~~~~~i~~l~~s~~g~~l 277 (423)
...+.|..|+.. .+.... . ......+..++++|+|+++
T Consensus 89 ------------------------------------~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~ 131 (314)
T 1pjx_A 89 ------------------------------------DMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLW 131 (314)
T ss_dssp ------------------------------------ETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEE
T ss_pred ------------------------------------ECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEE
Confidence 112234444432 221111 0 0112347789999999887
Q ss_pred EEEEec---------------CeEEEEECCCccceecccccccCCCeEEEEEC----CCCCeEE-EEeCCCcEEEEecC-
Q psy13076 278 ASAGFD---------------GKVFLYDGASADLVSELGNPAHKGGVYAVAWK----PDGTQLL-TASGDKTCKLWDIE- 336 (423)
Q Consensus 278 ~s~s~d---------------g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~l~-s~s~d~~i~iwd~~- 336 (423)
++...+ +.|..++.. ++..... .+......++|+ |+++.|. +...++.|.+||+.
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~---~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~ 207 (314)
T 1pjx_A 132 ITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD---TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG 207 (314)
T ss_dssp EEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE---EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE
T ss_pred EEecCcccccccccccccCCCCeEEEECCC-CCEEEec---cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC
Confidence 776655 578888765 4432221 123456789999 9997554 44567899999986
Q ss_pred Ccceee--eeee-C-ce-eEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCC-eEEEe
Q psy13076 337 TKSAVS--EFLM-G-NQ-VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRG-TVFTG 410 (423)
Q Consensus 337 ~~~~i~--~~~~-~-~~-~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~-~l~s~ 410 (423)
+++... .+.. . .. .....+...++|...++...++.|..||..+... +..+..+...+.+++|+|+++ ++++.
T Consensus 208 ~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~ 286 (314)
T 1pjx_A 208 PAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP-KMRIRCPFEKPSNLHFKPQTKTIFVTE 286 (314)
T ss_dssp TTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC-SEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred CCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcE-eEEEeCCCCCceeEEECCCCCEEEEEe
Confidence 333211 1111 0 00 1233355556788777777888999999874432 344556667899999999999 55666
Q ss_pred cCCCcEEEeeCC
Q psy13076 411 SHDGFITRWNAK 422 (423)
Q Consensus 411 s~D~~i~~W~~~ 422 (423)
..++.|..|++.
T Consensus 287 ~~~~~l~~~~~~ 298 (314)
T 1pjx_A 287 HENNAVWKFEWQ 298 (314)
T ss_dssp TTTTEEEEEECS
T ss_pred CCCCeEEEEeCC
Confidence 677889998865
No 209
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.39 E-value=4.7e-10 Score=104.21 Aligned_cols=281 Identities=14% Similarity=0.151 Sum_probs=178.4
Q ss_pred CCCCCeEEEecC------CeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEc----------cCCcEEEEEcCC
Q psy13076 99 DPKGKNFLYTNG------NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD----------ISGKVRIWDTVN 162 (423)
Q Consensus 99 ~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~----------~d~~i~vwd~~~ 162 (423)
.+++..++..+. +.+.+.|.++.+....+..-..+ .+.++|||++++.+. .++.|.++|..+
T Consensus 81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 345554444432 58889999998887776533344 789999999888776 367899999988
Q ss_pred CceeEEeeecC-----CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEE
Q psy13076 163 KEHILKNEFHP-----IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIIT 237 (423)
Q Consensus 163 ~~~~~~~~~~~-----~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s 237 (423)
.+......... .......+.|+|||++++++.........+++..+.+.+..+..... ....|.+...+++
T Consensus 159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~ 234 (426)
T 3c75_H 159 FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYM 234 (426)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEE
T ss_pred CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEE
Confidence 77654443320 01234578999999999988654334456667766666665543221 2334444444566
Q ss_pred EeCCCeEEEEcCCCceeeee----ccccccC-eEEEEECCCCCEEEEEEecCeEEEEECCCccce--eccccc-------
Q psy13076 238 GSEDNTIAVFEGPPFKFKMT----KQEHSRF-VQAVRYSPSGSHFASAGFDGKVFLYDGASADLV--SELGNP------- 303 (423)
Q Consensus 238 ~s~d~~i~~~~~~~~~~~~~----~~~~~~~-i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~------- 303 (423)
.+.|+.+.+.+....+.... ......+ ...+.+.++++.++..+..+.+.+.|....... ..+...
T Consensus 235 ~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~ 314 (426)
T 3c75_H 235 NCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERAD 314 (426)
T ss_dssp EETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGG
T ss_pred EcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccc
Confidence 66777766666533332211 1111111 123567899988777788899999998654321 111100
Q ss_pred -ccCCCeEEEEECCCCCeEEEEeC----------CCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCc-EEEEEe-CC
Q psy13076 304 -AHKGGVYAVAWKPDGTQLLTASG----------DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGD-YLLTVS-LS 370 (423)
Q Consensus 304 -~~~~~i~~l~~~~~~~~l~s~s~----------d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~-~l~~~~-~~ 370 (423)
........++++|+++.|..... +++|.+.|..+.+.+.++..+. ....+.+.++|+ .+++.. .+
T Consensus 315 g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~--~P~gia~spDg~~~lyv~n~~s 392 (426)
T 3c75_H 315 DWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH--EIDSINVSQDAEPLLYALSAGT 392 (426)
T ss_dssp TEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECCSSSCEEEEEETTT
T ss_pred ccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC--CcCeEEEccCCCEEEEEEcCCC
Confidence 00112223789999887666532 3579999999999988876543 345566778998 777777 58
Q ss_pred CcEEEEecCCCCCceEEe
Q psy13076 371 GFISYLDVNNPSTPIRVI 388 (423)
Q Consensus 371 ~~i~~~~~~~~~~~~~~~ 388 (423)
+.+.++|..+.+. ++.+
T Consensus 393 ~~VsVID~~t~kv-v~tI 409 (426)
T 3c75_H 393 QTLHIYDAATGEE-LRSV 409 (426)
T ss_dssp TEEEEEETTTCCE-EEEE
T ss_pred CeEEEEECCCCCE-EEEe
Confidence 9999999988643 4443
No 210
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.39 E-value=4.5e-10 Score=104.95 Aligned_cols=254 Identities=9% Similarity=0.038 Sum_probs=150.2
Q ss_pred CceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecC--C-eEEEEecCCCccc
Q psy13076 48 KPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNG--N-SVIIRNIENPAIS 124 (423)
Q Consensus 48 ~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~i~~~~~~~~~ 124 (423)
.....|+|++++.++++...++.|++||.+++.+....... ..+. +.++++++.++.... . .+.+++..++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~--~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF--KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC--CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC--CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 45779999999998888888899999999987665443321 2223 667888887666542 2 6777777655433
Q ss_pred ccc----cCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEee--ecCCCC--CeeEEEECCCCCeEEEEEcC
Q psy13076 125 DIY----TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE--FHPIGG--PIKDIAWSPDNQRMVVVGEG 196 (423)
Q Consensus 125 ~~~----~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~~--~v~~v~~s~~~~~~~~~~~~ 196 (423)
..+ ..+...++.++++|++..|+.+..++.|..||..++....... ...... |...++|+|++..+.++...
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~ 287 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN 287 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence 233 2244567789999955555557778899999987654322110 111111 11277788765555544322
Q ss_pred CceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCE
Q psy13076 197 RERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH 276 (423)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~ 276 (423)
.... ..+ .+++....+.+... ...+.--............++++|+|.+
T Consensus 288 ~~~I-~~~-----------------------~~~g~~~~~~g~~~-------~~g~~dg~~~~~~~~~P~gia~d~dG~l 336 (409)
T 3hrp_A 288 LSSV-YKI-----------------------TPDGECEWFCGSAT-------QKTVQDGLREEALFAQPNGMTVDEDGNF 336 (409)
T ss_dssp TTEE-EEE-----------------------CTTCCEEEEEECTT-------CCSCBCEEGGGCBCSSEEEEEECTTCCE
T ss_pred CCEE-EEE-----------------------ecCCCEEEEEeCCC-------CCCcCCCcccccEeCCCeEEEEeCCCCE
Confidence 2111 111 11111111111100 0000000001112234688999999997
Q ss_pred EEEEE-ecCeEEEEECCCccceecccc------------cccCCCeEEEEECCCCCeEEEEeCCCcEEEEec
Q psy13076 277 FASAG-FDGKVFLYDGASADLVSELGN------------PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDI 335 (423)
Q Consensus 277 l~s~s-~dg~i~vwd~~~~~~~~~~~~------------~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~ 335 (423)
+++-+ .++.|+.|+..++........ .+.-....+++++|+|.++++-..++.|+.+++
T Consensus 337 yvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 337 YIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 77777 788999999776654321110 001245789999999988888888888887765
No 211
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.37 E-value=9.8e-10 Score=102.66 Aligned_cols=254 Identities=11% Similarity=0.025 Sum_probs=157.3
Q ss_pred ceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcc
Q psy13076 132 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTS 211 (423)
Q Consensus 132 ~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (423)
.....++|+|+++++++...++.|++||..++....... . ..... ++|+|+++.++++..........+....+..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~--~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP--G-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE--T-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec--c-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 467899999999988887778999999987655432211 1 22234 9999999988777654432334444444433
Q ss_pred eecc----cCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeee----ccccccCe--EEEEECCC-CCEEEEE
Q psy13076 212 VGEI----SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT----KQEHSRFV--QAVRYSPS-GSHFASA 280 (423)
Q Consensus 212 ~~~~----~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~----~~~~~~~i--~~l~~s~~-g~~l~s~ 280 (423)
...+ ......+.+++++|.+.. ++.+..++.|+.|+......... .......- ..++|+|+ +.++++-
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence 2222 214456788999995554 44466788899998654432221 11111111 28999995 5556666
Q ss_pred EecCeEEEEECCCccceeccccc-------------ccCCCeEEEEECCCCCeEEEEe-CCCcEEEEecCCcceeeeeee
Q psy13076 281 GFDGKVFLYDGASADLVSELGNP-------------AHKGGVYAVAWKPDGTQLLTAS-GDKTCKLWDIETKSAVSEFLM 346 (423)
Q Consensus 281 s~dg~i~vwd~~~~~~~~~~~~~-------------~~~~~i~~l~~~~~~~~l~s~s-~d~~i~iwd~~~~~~i~~~~~ 346 (423)
..++.|+.|+.... ...+... +.-....+++++|+|+++++-+ .++.|+.||+.++.. ..+..
T Consensus 286 ~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g 362 (409)
T 3hrp_A 286 QNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAG 362 (409)
T ss_dssp TTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEE
T ss_pred CCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeC
Confidence 67889999986532 1111100 1123478999999999888887 889999999876642 22211
Q ss_pred CceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076 347 GNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 422 (423)
Q Consensus 347 ~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~ 422 (423)
... ..+. .++.. ....-.....++++|++.++++-..++.|+.++++
T Consensus 363 ~~~-------------------~~g~------~~g~~----~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 363 QVD-------------------VASQ------IDGTP----LEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp CTT-------------------CBSC------CCBST----TTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred CCC-------------------CCCc------CCCCh----hceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 000 0000 00000 01112457899999999888998999999888764
No 212
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.31 E-value=2.6e-07 Score=94.11 Aligned_cols=391 Identities=9% Similarity=0.015 Sum_probs=221.4
Q ss_pred EEEEeCCEEEEEeccceEEEEeccCCCCceeecc-cc-cCc-eeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC
Q psy13076 11 SCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIK-GH-NKP-ITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR 87 (423)
Q Consensus 11 ~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~-gh-~~~-V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~ 87 (423)
+...+|.+.++ +. +.|..+|..+ ..+..+. ++ ... |.++...+++.+.+ |..++.|..|+.+++........
T Consensus 137 ~~d~~g~lwi~-t~-~gl~~~~~~~--~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~ 211 (795)
T 4a2l_A 137 EEISPEQLLIS-TP-EGLIMFDIKE--SKFIDDSFSTAMHKTIASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPI 211 (795)
T ss_dssp EEEETTEEEEE-ET-TEEEEEETTT--TEEECSSSCHHHHTCCEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC--
T ss_pred EECCCCCEEEE-EC-CceEEEECCC--CEEEeccCCCCCCcceEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCC
Confidence 33445655554 44 4577888653 2222222 11 123 88899888887665 55555688899877654332211
Q ss_pred CCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccC-------CcceEEEEEECCCCCEEEEEccCCcEEEEEc
Q psy13076 88 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTE-------HSCAVNVAKYSPSGFYIASGDISGKVRIWDT 160 (423)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~ 160 (423)
........+..+++|..++.+.++.+..++.+++........ ....|.++...++|.+.+.. .+ .|.+||.
T Consensus 212 ~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~-Gl~~~~~ 289 (795)
T 4a2l_A 212 LGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT-FN-DLNIYHE 289 (795)
T ss_dssp --CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE-SS-CEEEEET
T ss_pred CCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe-CC-hhheEcC
Confidence 112223345556677777777666788888776554433221 23579999999988866644 34 5888997
Q ss_pred CCCceeEEeee-----cCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceeccc-------CCCcceeEEEEe
Q psy13076 161 VNKEHILKNEF-----HPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS-------GQSKPINSCDFK 228 (423)
Q Consensus 161 ~~~~~~~~~~~-----~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~ 228 (423)
.+.....-... .-....|.++...++|...+.. ...+. ..+...... ...+. .....|.++...
T Consensus 290 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt-~~~Gl--~~~~~~~~~-~~~~~~~~~~~~l~~~~V~~i~~d 365 (795)
T 4a2l_A 290 GTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGT-YFGGL--NYYHPIRNR-FKNIRNIPYKNSLSDNVVSCIVED 365 (795)
T ss_dssp TTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEE-SSSCE--EEECGGGGS-SEEECCCTTSSSCSCSSEEEEEEC
T ss_pred CCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEE-CCCCe--EEeCCCccc-ceEEcCCCCCCCCCCCeeEEEEEC
Confidence 66543221110 0123568899999988755433 22221 222222211 11111 123457777777
Q ss_pred cCCCeeEEEEeCCCeEEEEcCCCceeeeecc--------ccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecc
Q psy13076 229 PSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ--------EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL 300 (423)
Q Consensus 229 ~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~--------~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~ 300 (423)
+++. +..|+.++.+..|+.....+..... .....|.++...++|..|..|+.++-|..+|..+++.....
T Consensus 366 ~~g~--lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~ 443 (795)
T 4a2l_A 366 KDKN--LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFN 443 (795)
T ss_dssp TTSC--EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEEC
T ss_pred CCCC--EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEee
Confidence 7665 6668888889999865443322111 12356889998889885777888778999998776532211
Q ss_pred c--ccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeC---ce---eEeeEEEEEecCcEEEEEeCCCc
Q psy13076 301 G--NPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMG---NQ---VEDQQVSCLWQGDYLLTVSLSGF 372 (423)
Q Consensus 301 ~--~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~---~~---~~~~~~~~~~~g~~l~~~~~~~~ 372 (423)
. .......|.++..+++|++.+.. .+ -+.+||..+++.. .+... .. .....+....+|. +-.++. +.
T Consensus 444 ~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~-~G 518 (795)
T 4a2l_A 444 QRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFT-TIEKEKDGTPVVSKQITTLFRDSHKR-LWIGGE-EG 518 (795)
T ss_dssp TTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEE-ECCBCTTCCBCCCCCEEEEEECTTCC-EEEEES-SC
T ss_pred cCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEE-EccccccccccCCceEEEEEECCCCC-EEEEeC-Cc
Confidence 1 01234578999999988866654 34 4888998776432 22111 00 1112222223444 334444 56
Q ss_pred EEEEecCCCCCceEE-----eccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076 373 ISYLDVNNPSTPIRV-----IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 422 (423)
Q Consensus 373 i~~~~~~~~~~~~~~-----~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~ 422 (423)
+..++..+... ... ..-....|.++...+++++.+++.. -+..||..
T Consensus 519 l~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~--Gl~~~d~~ 570 (795)
T 4a2l_A 519 LSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE--GFYCFNEK 570 (795)
T ss_dssp EEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS--CEEEEETT
T ss_pred eEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC--CceeECCC
Confidence 77787755322 100 0123457999999999987665443 46667654
No 213
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.31 E-value=3.6e-10 Score=113.28 Aligned_cols=248 Identities=11% Similarity=0.011 Sum_probs=147.9
Q ss_pred ccccCceeEEEEeCCCCeEE-----EecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEec
Q psy13076 44 KGHNKPITALALSPDRGTVF-----TGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNI 118 (423)
Q Consensus 44 ~gh~~~V~~l~~~~~~~~l~-----sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 118 (423)
++|...+..++||||+++|| +|+.+.+|++||+++++.+....
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-------------------------------- 172 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-------------------------------- 172 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--------------------------------
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--------------------------------
Confidence 35666888999999999887 45556789999999876432100
Q ss_pred CCCcccccccCCcceEEEEEECCCCCEEEEEccCC-------------cEEEEEcCCCce--eEEeeecC-CCCCeeEEE
Q psy13076 119 ENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISG-------------KVRIWDTVNKEH--ILKNEFHP-IGGPIKDIA 182 (423)
Q Consensus 119 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~-------------~i~vwd~~~~~~--~~~~~~~~-~~~~v~~v~ 182 (423)
.+ .....+.|+ ||+.|+.++.+. .|.+|++.+... ........ ......++.
T Consensus 173 ---------~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~ 240 (693)
T 3iuj_A 173 ---------KD--VKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGAT 240 (693)
T ss_dssp ---------EE--EESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEE
T ss_pred ---------CC--ceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEE
Confidence 00 001234577 777776666553 489999876542 11111111 123467899
Q ss_pred ECCCCCeEEEEEcCCce--eeEEEeecCCc-ceecccCCCcceeEEEEecCCCeeEEEEeCC---CeEEEEcCCCcee--
Q psy13076 183 WSPDNQRMVVVGEGRER--FGHVFMSETGT-SVGEISGQSKPINSCDFKPSRPFRIITGSED---NTIAVFEGPPFKF-- 254 (423)
Q Consensus 183 ~s~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d---~~i~~~~~~~~~~-- 254 (423)
|+|||+++++....... ...+++.+.+. ....+..+....... +++.+...++....+ ..|..++......
T Consensus 241 ~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~ 319 (693)
T 3iuj_A 241 VTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAH 319 (693)
T ss_dssp ECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGG
T ss_pred EcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccc
Confidence 99999998776543322 22333333332 333444443333333 556666555555544 5688887654321
Q ss_pred eeeccccccCeEEEEECCCCCEEEEEEecC---eEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCC----
Q psy13076 255 KMTKQEHSRFVQAVRYSPSGSHFASAGFDG---KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD---- 327 (423)
Q Consensus 255 ~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d---- 327 (423)
...+..+...+. .|++++++|+....++ .|++|+...+ ....+..+ ..+.+..+.++|+++.|+....+
T Consensus 320 ~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP 395 (693)
T 3iuj_A 320 WRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALP-GLGSVSGFNGKHDDPALYFGFENYAQP 395 (693)
T ss_dssp CEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCS-SSSEEEECCCCTTCSCEEEEEECSSSC
T ss_pred cEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecC-CCceEEeeecCCCCCEEEEEecCCCCC
Confidence 012233444443 8899999887776544 6889998744 33444322 34557778888888877665554
Q ss_pred CcEEEEecCCcce
Q psy13076 328 KTCKLWDIETKSA 340 (423)
Q Consensus 328 ~~i~iwd~~~~~~ 340 (423)
+++..||+.+++.
T Consensus 396 ~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 396 PTLYRFEPKSGAI 408 (693)
T ss_dssp CEEEEECTTTCCE
T ss_pred CEEEEEECCCCeE
Confidence 7899999987653
No 214
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.29 E-value=2.2e-09 Score=107.04 Aligned_cols=340 Identities=14% Similarity=0.112 Sum_probs=176.2
Q ss_pred eCCEEEEEeccceEEEEeccCCCCceeecccccC----------ce-eEEEEeCCCCeEEEecCCCceEEeecCCcceee
Q psy13076 15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNK----------PI-TALALSPDRGTVFTGSHDGFITRWNAKTEYIFA 83 (423)
Q Consensus 15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~----------~V-~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~ 83 (423)
+|+.|..++.++.|.-+|..++...- .+..+.. .+ ..+++ .+..|+.++.|+.|..+|.++++.+=
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG~~~W-~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W 145 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDGRLIW-KYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAW 145 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTCCEEE-EECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCeEEEEECCCCceeE-EEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEee
Confidence 47778888889999999987755433 3322111 11 11222 35678889999999999999998764
Q ss_pred cccCC-CCCCceEEeeCC---CCCeEEEec------CCeEEEEecCCCcccccccC------------------------
Q psy13076 84 TLPRT-QRGQPIVLGGDP---KGKNFLYTN------GNSVIIRNIENPAISDIYTE------------------------ 129 (423)
Q Consensus 84 ~~~~~-~~~~~~~~~~~~---~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~------------------------ 129 (423)
..... .......+...| ++..++... +..+..+|.++++....+..
T Consensus 146 ~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 225 (689)
T 1yiq_A 146 SVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD 225 (689)
T ss_dssp EEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred eecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence 43321 100000011111 233333222 24677777777776654431
Q ss_pred -------CcceEEEEEECCCCCEEEEEccCCc-------------------EEEEEcCCCceeEEeeecCCC-------C
Q psy13076 130 -------HSCAVNVAKYSPSGFYIASGDISGK-------------------VRIWDTVNKEHILKNEFHPIG-------G 176 (423)
Q Consensus 130 -------h~~~i~~~~~sp~~~~l~s~~~d~~-------------------i~vwd~~~~~~~~~~~~~~~~-------~ 176 (423)
+...-..+.++|++..++.+..++. |..+|.++++..+..+...+. .
T Consensus 226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 305 (689)
T 1yiq_A 226 AYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQ 305 (689)
T ss_dssp THHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCS
T ss_pred eeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCC
Confidence 0011124678888888888877763 888898888877655432211 1
Q ss_pred CeeEEEECCCCC--eEEEEEcCCceeeEEEeecCCcceecccCCC-cceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce
Q psy13076 177 PIKDIAWSPDNQ--RMVVVGEGRERFGHVFMSETGTSVGEISGQS-KPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK 253 (423)
Q Consensus 177 ~v~~v~~s~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~ 253 (423)
+........+|+ .+++.+ ......+.++..+++.+....... ..... +.+....-+.... ....|......
T Consensus 306 ~~~l~d~~~~G~~~~~v~~~-~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~--~~~~~~~pi~~~~---~~~~~~~~~~~ 379 (689)
T 1yiq_A 306 HMILAELPIDGKPRKVLMQA-PKNGFFYVIDRATGELLSAKGIVPQSWTKG--MDMKTGRPILDEE---NAAYWKNGKRN 379 (689)
T ss_dssp CEEEEEEEETTEEEEEEEEC-CTTSEEEEEETTTCCEEEEEESSCCSSEEE--EETTTTEEEECHH---HHCTTTSSSCE
T ss_pred CcEEEeeccCCcEEEEEEEE-CCCCeEEEEECCCCCEeccccccccccccc--cCccCCCcccchh---hccccCCCCee
Confidence 111111111332 122222 222334445555555443222111 00000 0000000000000 00000000000
Q ss_pred eeeeccccccCeEEEEECCCCCEEEEEEe---------------------------------------------cCeEEE
Q psy13076 254 FKMTKQEHSRFVQAVRYSPSGSHFASAGF---------------------------------------------DGKVFL 288 (423)
Q Consensus 254 ~~~~~~~~~~~i~~l~~s~~g~~l~s~s~---------------------------------------------dg~i~v 288 (423)
...........-..++++|+..++++.+. +|.|..
T Consensus 380 ~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A 459 (689)
T 1yiq_A 380 LVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIA 459 (689)
T ss_dssp EESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEE
T ss_pred EeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEE
Confidence 00000000001123677777776665532 478999
Q ss_pred EECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEE
Q psy13076 289 YDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLT 366 (423)
Q Consensus 289 wd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~ 366 (423)
||..+++...+... + .....-.+...+.+++.++.|+.++.||.++++.+-++..........++...+|+..++
T Consensus 460 ~D~~tG~~~W~~~~--~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 460 WDPVKQQAAWEVPY--V-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp EETTTTEEEEEEEE--S-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EECCCCCeEeEccC--C-CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 99999998766542 2 222333556678899999999999999999999998887665555555666668875443
No 215
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.29 E-value=1e-10 Score=106.80 Aligned_cols=272 Identities=6% Similarity=0.037 Sum_probs=158.8
Q ss_pred eeEEEEeCCEEEEEec--cceEEEEeccCCCCceeec-------ccccCceeEEEEeCCCCeEEEecC-----CCceEEe
Q psy13076 9 QVSCLWQGDYLLTVSL--SGFISYLDVNNPSTPIRVI-------KGHNKPITALALSPDRGTVFTGSH-----DGFITRW 74 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~--dg~i~~~d~~~~~~~~~~~-------~gh~~~V~~l~~~~~~~~l~sg~~-----D~~i~vW 74 (423)
-|++++||+++++..+ +|.++||.+++ .+ +..+ .+|...+..++++++++++++-.. ++.|.+|
T Consensus 21 ~va~~~~g~~~v~~~~~~~~~~~l~~~~~-g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~ 98 (343)
T 2qe8_A 21 NITLTPDGRLFLSLHQFYQPEMQVAELTQ-DG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAW 98 (343)
T ss_dssp EEEECTTSCEEEEECGGGCCSCSEEEEET-TE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEE
T ss_pred eEEECCCCCEEEEeCCCCCCceEEEEECC-CC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEE
Confidence 3667778999888653 34355555542 22 2222 246678999999999887776543 6889999
Q ss_pred ecCCcceeecccCCC-----CCCceEEeeCCC-CCeEEEe----cCCeEEEEecCCCcccccccCCcceEE-EEEECCCC
Q psy13076 75 NAKTEYIFATLPRTQ-----RGQPIVLGGDPK-GKNFLYT----NGNSVIIRNIENPAISDIYTEHSCAVN-VAKYSPSG 143 (423)
Q Consensus 75 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~----~~~~~~i~~~~~~~~~~~~~~h~~~i~-~~~~sp~~ 143 (423)
|.+++++...+.... ....--+..+++ +..++.. ....+.++++++++....+.+|..... ...+.++|
T Consensus 99 d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g 178 (343)
T 2qe8_A 99 DTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDG 178 (343)
T ss_dssp ETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETT
T ss_pred ECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECC
Confidence 999887655443211 111223445654 4444443 356889999988877666666532110 13345567
Q ss_pred CEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCccee
Q psy13076 144 FYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPIN 223 (423)
Q Consensus 144 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 223 (423)
..+.+.+.+++++.|.. .+..++|+|+++.+.+...... .++..+... +.
T Consensus 179 ~~~~~~~~~g~~~~~~~----------------~~~gia~s~dg~~ly~~~~~~~---~l~~~~~~~----~~------- 228 (343)
T 2qe8_A 179 VPVQIGQPDGTVIRPHL----------------GVNGIVLDAENEWLYLSPMHST---SMYRIKSAD----LS------- 228 (343)
T ss_dssp EECBEECTTSCEECCCC----------------CEEEEEECTTSCEEEEEESSCS---EEEEEEHHH----HT-------
T ss_pred EEEEeccCCCceeceec----------------ccceeEeccCCCEEEEEeCCCC---eEEEEEHHH----hc-------
Confidence 77777777887766531 2467999999988776543322 122111000 00
Q ss_pred EEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccccc
Q psy13076 224 SCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP 303 (423)
Q Consensus 224 ~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 303 (423)
+.. + + ++. ++ .... ...+......++++++|.++++...++.|.+||.++++...... .
T Consensus 229 ------~~~--~---~-~~~--~~--~~~~----~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-~ 287 (343)
T 2qe8_A 229 ------NLQ--L---T-DAE--LG--SKIE----RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-D 287 (343)
T ss_dssp ------CTT--C---C-HHH--HH--TTCE----EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-C
T ss_pred ------CCC--C---C-hhh--hh--cceE----ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-C
Confidence 000 0 0 000 00 0000 00111234568999999999988889999999985565322221 1
Q ss_pred ccCCCeEEEEECCCCCeEEEEeCCCcEEEE
Q psy13076 304 AHKGGVYAVAWKPDGTQLLTASGDKTCKLW 333 (423)
Q Consensus 304 ~~~~~i~~l~~~~~~~~l~s~s~d~~i~iw 333 (423)
.+...+.+++|.++++++++.+..+.+.+|
T Consensus 288 ~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 288 EKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp GGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred CceecCCeeEECCCCcEEEEeCcccccccc
Confidence 234568899999999888887655544333
No 216
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.26 E-value=4.3e-09 Score=104.72 Aligned_cols=329 Identities=11% Similarity=0.085 Sum_probs=176.3
Q ss_pred eCCEEEEEeccceEEEEeccCCCCceeecccccC-----------ceeEEEEeCCCCeEEEecCCCceEEeecCCcceee
Q psy13076 15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNK-----------PITALALSPDRGTVFTGSHDGFITRWNAKTEYIFA 83 (423)
Q Consensus 15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~-----------~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~ 83 (423)
.|+.|..++.++.|.-+|..++...- .++.... .-..+++ .+..|+.++.|+.|..+|.++++.+-
T Consensus 76 ~~g~vyv~~~~~~v~AlD~~tG~~~W-~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W 152 (677)
T 1kb0_A 76 VDGIMYVSASWSVVHAIDTRTGNRIW-TYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVW 152 (677)
T ss_dssp ETTEEEEECGGGCEEEEETTTTEEEE-EECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEE-EEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence 46777778888999999987654332 2221110 0112232 45678888999999999999998765
Q ss_pred cccCC-C-------CCCceEEeeCCCCCeEEEec------CCeEEEEecCCCcccccccCCc------------------
Q psy13076 84 TLPRT-Q-------RGQPIVLGGDPKGKNFLYTN------GNSVIIRNIENPAISDIYTEHS------------------ 131 (423)
Q Consensus 84 ~~~~~-~-------~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~h~------------------ 131 (423)
.+... . ...+++. ++..++... +..+..+|.++++....+....
T Consensus 153 ~~~~~~~~~~~~~~~~~p~v~----~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~ 228 (677)
T 1kb0_A 153 HQNTFEGQKGSLTITGAPRVF----KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAART 228 (677)
T ss_dssp EEETTTTCCSSCBCCSCCEEE----TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred eecCCcCcCcCcccccCcEEE----CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccc
Confidence 54322 1 1111111 233333322 3567777777777665443211
Q ss_pred --------------ceEEEEEECCCCCEEEEEccCC-------------------cEEEEEcCCCceeEEeeecCCC---
Q psy13076 132 --------------CAVNVAKYSPSGFYIASGDISG-------------------KVRIWDTVNKEHILKNEFHPIG--- 175 (423)
Q Consensus 132 --------------~~i~~~~~sp~~~~l~s~~~d~-------------------~i~vwd~~~~~~~~~~~~~~~~--- 175 (423)
.....+.++|++..++.+..++ .|..+|.++++..+..+...+.
T Consensus 229 w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd 308 (677)
T 1kb0_A 229 WDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWD 308 (677)
T ss_dssp SCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC
T ss_pred ccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccc
Confidence 1113467888888888776654 4788888877776654432211
Q ss_pred ----CCeeEEEECCCCC--eEEEEEcCCceeeEEEeecCCcceecccCCCcc-eeEEEEecCCCeeEEEEe---CCCeEE
Q psy13076 176 ----GPIKDIAWSPDNQ--RMVVVGEGRERFGHVFMSETGTSVGEISGQSKP-INSCDFKPSRPFRIITGS---EDNTIA 245 (423)
Q Consensus 176 ----~~v~~v~~s~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~s~s---~d~~i~ 245 (423)
.....+....+|+ .+++.+. .....++++..+++.+........+ ...++ ..+.. +.... ..+...
T Consensus 309 ~~~~~~p~l~~~~~dG~~~~~l~~~~-~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d--~~g~~-~~~~~~~~~~~~~~ 384 (677)
T 1kb0_A 309 YTSTQPMILADIKIAGKPRKVILHAP-KNGFFFVLDRTNGKFISAKNFVPVNWASGYD--KHGKP-IGIAAARDGSKPQD 384 (677)
T ss_dssp CCCCSCCEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEEEEEESSCCSSEEEEC--TTSCE-EECGGGGCTTSCEE
T ss_pred cccCCCcEEEecccCCcEeeEEEEEC-CCCEEEEEECCCCCEeccccccccCcccccC--CCCce-eeccccCcCCCccE
Confidence 1111122222442 2222221 2223344455555544332211100 00000 00000 00000 000000
Q ss_pred EEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEe-------------------------------------------
Q psy13076 246 VFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGF------------------------------------------- 282 (423)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~------------------------------------------- 282 (423)
++. ...+... -..++++|++.++++...
T Consensus 385 ~~P--------~~~G~~~-w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 455 (677)
T 1kb0_A 385 AVP--------GPYGAHN-WHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKP 455 (677)
T ss_dssp CSS--------CTTCSSC-SSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCC
T ss_pred ECc--------CcccccC-CCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCC
Confidence 000 0000001 124678888777766543
Q ss_pred cCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCc
Q psy13076 283 DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGD 362 (423)
Q Consensus 283 dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~ 362 (423)
.|.|..||..+++.+.+... ...+.+..+..++..++.++.|+.+++||.++++.+.++..........+....+|+
T Consensus 456 ~g~l~A~D~~tG~~~W~~~~---~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~ 532 (677)
T 1kb0_A 456 FGRLLAWDPVAQKAAWSVEH---VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGR 532 (677)
T ss_dssp EEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred ccEEEEEeCCCCcEEeecCC---CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCE
Confidence 27899999999998776642 233444556677888889999999999999999999988766655555566666886
Q ss_pred EEEE
Q psy13076 363 YLLT 366 (423)
Q Consensus 363 ~l~~ 366 (423)
.+++
T Consensus 533 ~~v~ 536 (677)
T 1kb0_A 533 QYVS 536 (677)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
No 217
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.26 E-value=2.7e-09 Score=97.38 Aligned_cols=240 Identities=12% Similarity=0.053 Sum_probs=139.4
Q ss_pred CceeEEEEeCCCCeEEEec--CCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccc
Q psy13076 48 KPITALALSPDRGTVFTGS--HDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISD 125 (423)
Q Consensus 48 ~~V~~l~~~~~~~~l~sg~--~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 125 (423)
..+..++++++++++++.. .++.+++|.+.++++. .++.. . .
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~------------------------------~-----~ 60 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQ------------------------------S-----G 60 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCC------------------------------C-----S
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCc------------------------------c-----c
Confidence 6788999999999988853 2344677766433221 11100 0 0
Q ss_pred cccCCcceEEEEEECCCCCEEEEEcc-----CCcEEEEEcCCCceeEEeeecC----CCCCeeEEEECCCCCeEEEEEcC
Q psy13076 126 IYTEHSCAVNVAKYSPSGFYIASGDI-----SGKVRIWDTVNKEHILKNEFHP----IGGPIKDIAWSPDNQRMVVVGEG 196 (423)
Q Consensus 126 ~~~~h~~~i~~~~~sp~~~~l~s~~~-----d~~i~vwd~~~~~~~~~~~~~~----~~~~v~~v~~s~~~~~~~~~~~~ 196 (423)
...+|...+..++++|++++.++-.. +..|.+||..+++......+.. .......++++|++..+.+...+
T Consensus 61 ~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~ 140 (343)
T 2qe8_A 61 NAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPA 140 (343)
T ss_dssp SCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECC
T ss_pred CcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCc
Confidence 11245667899999999876665433 5789999998776443333321 12346889999876655554331
Q ss_pred --CceeeEEEeecCCcceecccCCCccee-EEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCC
Q psy13076 197 --RERFGHVFMSETGTSVGEISGQSKPIN-SCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPS 273 (423)
Q Consensus 197 --~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 273 (423)
......+++..+++....+..+..... ...+.+++. .+.+.+.++.+..|. ..+..++++|+
T Consensus 141 ~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~-~~~~~~~~g~~~~~~--------------~~~~gia~s~d 205 (343)
T 2qe8_A 141 PDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGV-PVQIGQPDGTVIRPH--------------LGVNGIVLDAE 205 (343)
T ss_dssp SGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTE-ECBEECTTSCEECCC--------------CCEEEEEECTT
T ss_pred cCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCE-EEEeccCCCceecee--------------cccceeEeccC
Confidence 222334555555555444433211100 022333332 233344555554432 13567999999
Q ss_pred CCEEEEEEecC-eEEEEECC---Ccc-----ceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076 274 GSHFASAGFDG-KVFLYDGA---SAD-----LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK 338 (423)
Q Consensus 274 g~~l~s~s~dg-~i~vwd~~---~~~-----~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~ 338 (423)
|+.|+.+..++ .+..++.. .+. ....+...++.+....++++++|+++++...++.|.+||.+++
T Consensus 206 g~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G 279 (343)
T 2qe8_A 206 NEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADR 279 (343)
T ss_dssp SCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTT
T ss_pred CCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCC
Confidence 99888877665 56555532 111 0111111123345567999999999999988999999998444
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.26 E-value=1.4e-08 Score=91.86 Aligned_cols=227 Identities=12% Similarity=0.067 Sum_probs=138.3
Q ss_pred eeEEEEeCC-CCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCccccccc
Q psy13076 50 ITALALSPD-RGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYT 128 (423)
Q Consensus 50 V~~l~~~~~-~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 128 (423)
.....|+|+ +.+++++..++.|..||.++++... +.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------------------~~----------- 87 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------------------HA----------- 87 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------------------EE-----------
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------------------EE-----------
Confidence 346678876 4456666677778888776543210 00
Q ss_pred CCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeec--CCCCCeeEEEECCCCCeEEEEEcCC--ceeeEEE
Q psy13076 129 EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH--PIGGPIKDIAWSPDNQRMVVVGEGR--ERFGHVF 204 (423)
Q Consensus 129 ~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~~~~~~~~~--~~~~~~~ 204 (423)
....+.++.++|+|+++++. +..|.+||..+++........ .....+.+++++|+|+..+...... .....++
T Consensus 88 -~~~~v~~i~~~~dg~l~v~~--~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~ 164 (326)
T 2ghs_A 88 -LPFMGSALAKISDSKQLIAS--DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIY 164 (326)
T ss_dssp -CSSCEEEEEEEETTEEEEEE--TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEE
T ss_pred -CCCcceEEEEeCCCeEEEEE--CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEE
Confidence 11357788899999887765 345899998766543211111 1123578999999998655433210 0112344
Q ss_pred eecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC--Cc-ee-----eeeccccccCeEEEEECCCCCE
Q psy13076 205 MSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP--PF-KF-----KMTKQEHSRFVQAVRYSPSGSH 276 (423)
Q Consensus 205 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~--~~-~~-----~~~~~~~~~~i~~l~~s~~g~~ 276 (423)
..+.+ ....+.......+.++|+|++..+.++.+.++.|.+|+.. .. .+ ..........+..++++++|.+
T Consensus 165 ~~~~g-~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~l 243 (326)
T 2ghs_A 165 HVAKG-KVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI 243 (326)
T ss_dssp EEETT-EEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE
T ss_pred EEeCC-cEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCE
Confidence 33322 2222222223467889999998766666778899999853 22 21 1112222345678999999987
Q ss_pred EEEEEecCeEEEEECCCccceecccccccCCCeEEEEEC-CCCCeEEEEeC
Q psy13076 277 FASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWK-PDGTQLLTASG 326 (423)
Q Consensus 277 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~l~s~s~ 326 (423)
.++...++.|..|+. +++.+..+.. +...+.+++|+ |+++.|..++.
T Consensus 244 wva~~~~~~v~~~d~-~g~~~~~i~~--~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 244 WNARWGEGAVDRYDT-DGNHIARYEV--PGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEEETTTEEEEECT-TCCEEEEEEC--SCSBEEEEEEESTTSCEEEEEEB
T ss_pred EEEEeCCCEEEEECC-CCCEEEEEEC--CCCCcEEEEEecCCCCEEEEEec
Confidence 776666789999997 5665555532 34568999998 88876655443
No 219
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.24 E-value=3.2e-06 Score=86.10 Aligned_cols=388 Identities=9% Similarity=0.036 Sum_probs=218.8
Q ss_pred EEEeCCEEEEEeccceEEEEeccCCCCceeec--ccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC-
Q psy13076 12 CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVI--KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT- 88 (423)
Q Consensus 12 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~- 88 (423)
...+|.+.+ +..++.|..+|..+.. ...+ ..+...|.++...+++.+.+.. .++.+..||.+++.........
T Consensus 180 ~d~~g~lwi-gt~~~Gl~~~~~~~~~--~~~~~~~~~~~~i~~i~~d~~g~lwigt-~~~Gl~~~~~~~~~~~~~~~~~~ 255 (795)
T 4a2l_A 180 YRQGDQIYI-GTSTDGLYTYSITQKT--FEKVIPILGTKQIQAILQQSPTRIWVAT-EGAGLFLINPKTKEIKNYLHSPS 255 (795)
T ss_dssp EEETTEEEE-EESSSCEEEEETTTCC--EEECC----CCCEEEEEEEETTEEEEEE-BSSCEEEEETTTTEEEEECCCTT
T ss_pred ECCCCCEEE-EECCCCEEEEeCCCCe--EEEecCCCCCCeeEEEEEcCCCCEEEEE-CCCCeEEEeCCCCeEEEeecCCC
Confidence 334565555 5665568888875422 2222 2245678899888887766544 4445888998876543322110
Q ss_pred -----CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCccccccc-------CCcceEEEEEECCCCCEEEEEccCCcEE
Q psy13076 89 -----QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYT-------EHSCAVNVAKYSPSGFYIASGDISGKVR 156 (423)
Q Consensus 89 -----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-------~h~~~i~~~~~sp~~~~l~s~~~d~~i~ 156 (423)
.......+..+++|...+.+.+ .+.+++.+++....... -....|.++...++|.+-+ |..++.|.
T Consensus 256 ~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-gt~~~Gl~ 333 (795)
T 4a2l_A 256 NPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWL-GTYFGGLN 333 (795)
T ss_dssp CTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEE-EESSSCEE
T ss_pred CccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE-EECCCCeE
Confidence 1122334667788888887765 78888877665443321 1336799999999987554 55667788
Q ss_pred EEEcCCCceeEEeee---cC-CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceeccc---------CCCccee
Q psy13076 157 IWDTVNKEHILKNEF---HP-IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS---------GQSKPIN 223 (423)
Q Consensus 157 vwd~~~~~~~~~~~~---~~-~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~ 223 (423)
.++..+.....-... .. ....|.++...++|...+. +...+ ...+...++. ...+. .....|.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiG-t~~~G--l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~v~ 409 (795)
T 4a2l_A 334 YYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIG-TNDGG--LNLYNPITQR-FTSYTLQEDESARGIGSNNIK 409 (795)
T ss_dssp EECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEE-ESSSC--EEEECTTTCC-EEEECCC------CCSCSCEE
T ss_pred EeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEE-ECCCC--eEEEcCCCCc-EEEEecCCCCcccCCCCccEE
Confidence 888654432111110 01 2356889998888875543 22222 1223332222 11111 1134577
Q ss_pred EEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecc----ccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceec
Q psy13076 224 SCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ----EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299 (423)
Q Consensus 224 ~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~----~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~ 299 (423)
++...+++.. +..|+.++.+..++....+...... .....|.++...++|.+.+.. . +-+..||..+++....
T Consensus 410 ~i~~d~~g~~-lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~ 486 (795)
T 4a2l_A 410 AVYVDEKKSL-VYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTI 486 (795)
T ss_dssp EEEEETTTTE-EEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEEC
T ss_pred EEEEcCCCCE-EEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEc
Confidence 7777776652 5567777788999865444332211 223568899998888765544 4 4588899876543221
Q ss_pred ccc----cccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeee---Cc---eeEeeEEEEEecCcEEEEEeC
Q psy13076 300 LGN----PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLM---GN---QVEDQQVSCLWQGDYLLTVSL 369 (423)
Q Consensus 300 ~~~----~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~---~~---~~~~~~~~~~~~g~~l~~~~~ 369 (423)
... ......|.++..+++|+..+... +-+..||..+++. .+.. .. ......+....+|. +-.++.
T Consensus 487 ~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigT~ 561 (795)
T 4a2l_A 487 EKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGI-IWVGTR 561 (795)
T ss_dssp CBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSC-EEEEES
T ss_pred cccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCC-EEEEeC
Confidence 110 11235689999999998776554 4588899876654 2211 00 01112222223454 333444
Q ss_pred CCcEEEEecCCCCCceEEec---cC-CCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076 370 SGFISYLDVNNPSTPIRVIK---GH-NKPITALALSPDRGTVFTGSHDGFITRWNAK 422 (423)
Q Consensus 370 ~~~i~~~~~~~~~~~~~~~~---~h-~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~ 422 (423)
. .+..||..+.. +..+. +. ...|.++...+++++.+++. +-+..|+++
T Consensus 562 ~-Gl~~~d~~~~~--~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t~--~Gl~~~~~~ 613 (795)
T 4a2l_A 562 E-GFYCFNEKDKQ--IKRYNTTNGLPNNVVYGILEDSFGRLWLSTN--RGISCFNPE 613 (795)
T ss_dssp S-CEEEEETTTTE--EEEECGGGTCSCSCEEEEEECTTSCEEEEET--TEEEEEETT
T ss_pred C-CceeECCCCCc--EEEeCCCCCCchhheEEEEECCCCCEEEEcC--CceEEEcCC
Confidence 4 67788865532 22221 21 34688999998888776653 345556654
No 220
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.23 E-value=6.5e-10 Score=101.54 Aligned_cols=259 Identities=10% Similarity=-0.002 Sum_probs=151.4
Q ss_pred eEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEec----------CCCceEEeecCCcceeecccCCCCCCceEE
Q psy13076 27 FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS----------HDGFITRWNAKTEYIFATLPRTQRGQPIVL 96 (423)
Q Consensus 27 ~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~----------~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~ 96 (423)
.|.++|..+ .+.+.++.--..| .++++|++++|+.+. .+++|.+||..+.+....+.....
T Consensus 47 ~vsvID~~t-~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~------ 117 (368)
T 1mda_H 47 ENWVSCAGC-GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA------ 117 (368)
T ss_dssp EEEEEETTT-TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS------
T ss_pred eEEEEECCC-CeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCc------
Confidence 888999876 4556666544456 799999999888875 478999999999877665421100
Q ss_pred eeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEcc--CCcEEE--EEcCCCceeEEeeec
Q psy13076 97 GGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI--SGKVRI--WDTVNKEHILKNEFH 172 (423)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~--d~~i~v--wd~~~~~~~~~~~~~ 172 (423)
++ ...+ .....+.|+|||++++.+.. +..+.+ +|..+ .......
T Consensus 118 ------------------------~~---~~~g--~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~ 165 (368)
T 1mda_H 118 ------------------------PR---FSVG--PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA 165 (368)
T ss_dssp ------------------------CS---CCBS--CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS
T ss_pred ------------------------cc---cccC--CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC
Confidence 00 0000 01224679999999988875 356888 88765 1111110
Q ss_pred CC-----CCCeeEEEECCCCCeEEEEEcCCceeeEEEeecC-----Ccce----ecccCCCcceeEEEEecCCCeeEEEE
Q psy13076 173 PI-----GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSET-----GTSV----GEISGQSKPINSCDFKPSRPFRIITG 238 (423)
Q Consensus 173 ~~-----~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~~~i~~~~~~~~~~~~~~s~ 238 (423)
.. .+.-.-++++++++.+.+ ..+. ++.. ..+.....+. . .+.+.. ++..
T Consensus 166 ~~~~~~p~g~~~~~~~~~dg~~~~v------------d~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~-~~~v 228 (368)
T 1mda_H 166 SCFHIHPGAAATHYLGSCPASLAAS------------DLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGM-LVWA 228 (368)
T ss_dssp SCCCCEEEETTEEECCCCTTSCEEE------------ECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTE-EEEC
T ss_pred CceEEccCCCeEEEEEcCCCCEEEE------------ECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCE-EEEE
Confidence 00 000011333444443332 2221 1111 0111112232 2 444444 3333
Q ss_pred eCCCeEEEEcCCCc--eeeeeccc----------cccCeEEEEECCCCCEEEEEEe---------cCeEEEEECCCccce
Q psy13076 239 SEDNTIAVFEGPPF--KFKMTKQE----------HSRFVQAVRYSPSGSHFASAGF---------DGKVFLYDGASADLV 297 (423)
Q Consensus 239 s~d~~i~~~~~~~~--~~~~~~~~----------~~~~i~~l~~s~~g~~l~s~s~---------dg~i~vwd~~~~~~~ 297 (423)
+. +.+.+.|.... +....... .......++++|+|+.+..+.. ++.+.++|..+.+.+
T Consensus 229 s~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv 307 (368)
T 1mda_H 229 VA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS 307 (368)
T ss_dssp BS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE
T ss_pred cC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEE
Confidence 44 78888876432 22111100 0111222689999998776543 235669999999988
Q ss_pred ecccccccCCCeEEEEECCCCC-eEEEEe-CCCcEEEEecCCcceeeeeeeC
Q psy13076 298 SELGNPAHKGGVYAVAWKPDGT-QLLTAS-GDKTCKLWDIETKSAVSEFLMG 347 (423)
Q Consensus 298 ~~~~~~~~~~~i~~l~~~~~~~-~l~s~s-~d~~i~iwd~~~~~~i~~~~~~ 347 (423)
.++... ....+++|+|||+ .+++.. .+++|.++|+.+++.+.+...+
T Consensus 308 ~~i~vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 308 GPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp ECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred EEEECC---CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence 877532 2578999999997 566666 5999999999999988776543
No 221
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.23 E-value=4.1e-10 Score=103.16 Aligned_cols=173 Identities=11% Similarity=0.006 Sum_probs=119.0
Q ss_pred eeeEEEEeCCEEEEEeccceEEEEeccCCC----------CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecC
Q psy13076 8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPS----------TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 77 (423)
Q Consensus 8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~----------~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~ 77 (423)
+.+++....+++++|+.++.+ +|++.... ++. ....+.+ |..|+| ++.+|+++ .++.|++||+.
T Consensus 41 nlLais~~~gll~a~~~~~l~-v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~ 114 (388)
T 1xip_A 41 QNLDISNSKSLFVAASGSKAV-VGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLE 114 (388)
T ss_dssp BCEEEETTTTEEEEEETTEEE-EEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESS
T ss_pred cEEEEcCCCCEEEEeCCCEEE-EEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEch
Confidence 567888899999999998655 59864321 221 2234667 999999 88999998 88999999987
Q ss_pred CcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEE
Q psy13076 78 TEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRI 157 (423)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~v 157 (423)
+............. ...+...+. ..++...++.+.+|+++++.... +...|++++|+|+| ++.|..||++++
T Consensus 115 sl~~~~~~~~~~~~-v~~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~ 186 (388)
T 1xip_A 115 ELSEFRTVTSFEKP-VFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQS 186 (388)
T ss_dssp STTCEEEEEECSSC-EEEEEECSS-EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEE
T ss_pred hhhccCccceeecc-eeeEEecCC-CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEE
Confidence 64432222111111 112222222 25556778899999998776543 56789999999999 677889999999
Q ss_pred EEcCCCceeEEeee------c---CCCCCeeEEEECCCCCeEEEEE
Q psy13076 158 WDTVNKEHILKNEF------H---PIGGPIKDIAWSPDNQRMVVVG 194 (423)
Q Consensus 158 wd~~~~~~~~~~~~------~---~~~~~v~~v~~s~~~~~~~~~~ 194 (423)
|+....+...+..+ . .+...|.+|.|.+++.++++-.
T Consensus 187 ~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 187 FAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 98776553111222 1 2356799999999998887654
No 222
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.21 E-value=4.3e-09 Score=105.42 Aligned_cols=250 Identities=10% Similarity=0.166 Sum_probs=148.0
Q ss_pred CCcceEEEEEECCCCCEEEE-----EccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEE
Q psy13076 129 EHSCAVNVAKYSPSGFYIAS-----GDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHV 203 (423)
Q Consensus 129 ~h~~~i~~~~~sp~~~~l~s-----~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~ 203 (423)
+|...+..+.|||||+++|- |+.+.+|++||+++++.... .... .....++|+ |++.++.+......
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~---- 197 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKD--VKFSGISWL-GNEGFFYSSYDKPD---- 197 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEE--EESCCCEEE-TTTEEEEEESSCCC----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCC--ceeccEEEe-CCCEEEEEEecCcc----
Confidence 46678999999999999983 33346899999998875432 2211 112467899 99988876543210
Q ss_pred EeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc----eeeeeccc-cccCeEEEEECCCCCEEE
Q psy13076 204 FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF----KFKMTKQE-HSRFVQAVRYSPSGSHFA 278 (423)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~----~~~~~~~~-~~~~i~~l~~s~~g~~l~ 278 (423)
+. . +-.......|++|+.... ........ +......+.|+|||++|+
T Consensus 198 -----~~---~--------------------~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~ 249 (693)
T 3iuj_A 198 -----GS---E--------------------LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLL 249 (693)
T ss_dssp -----------------------------------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEE
T ss_pred -----cc---c--------------------ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEE
Confidence 00 0 000112334566654321 12222223 445577899999999886
Q ss_pred EEEe----cCeEEEEECCCcc-ceecccccccCCCeEEEEECCCCCeEEEEe-CC---CcEEEEecCCcce--eeeeeeC
Q psy13076 279 SAGF----DGKVFLYDGASAD-LVSELGNPAHKGGVYAVAWKPDGTQLLTAS-GD---KTCKLWDIETKSA--VSEFLMG 347 (423)
Q Consensus 279 s~s~----dg~i~vwd~~~~~-~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s-~d---~~i~iwd~~~~~~--i~~~~~~ 347 (423)
.... ++.|+++|+.++. ....+. .+....... |+++|..|+..+ .+ +.|..+|+.++.. ...+...
T Consensus 250 ~~~~~~~~~~~i~~~d~~~~~~~~~~l~--~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 326 (693)
T 3iuj_A 250 ISAANSTSGNRLYVKDLSQENAPLLTVQ--GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE 326 (693)
T ss_dssp EEEESSSSCCEEEEEETTSTTCCCEEEE--CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC
T ss_pred EEEccCCCCcEEEEEECCCCCCceEEEe--CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC
Confidence 5543 2489999987764 233332 234444444 666666554443 33 5788999987643 2333322
Q ss_pred ceeEeeEEEEEecCcEEEEEeC-CC--cEEEEecCCCCCceEEec-cCCCceeEEEecCCCCeEEEecCC----CcEEEe
Q psy13076 348 NQVEDQQVSCLWQGDYLLTVSL-SG--FISYLDVNNPSTPIRVIK-GHNKPITALALSPDRGTVFTGSHD----GFITRW 419 (423)
Q Consensus 348 ~~~~~~~~~~~~~g~~l~~~~~-~~--~i~~~~~~~~~~~~~~~~-~h~~~v~~i~~sp~~~~l~s~s~D----~~i~~W 419 (423)
... .. .+.++++.|+.... ++ .|++|+.... ....+. .+...+..++++|+++.|+....+ +++..|
T Consensus 327 ~~~--~~-~~s~~g~~lv~~~~~~g~~~l~~~d~~g~--~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~ 401 (693)
T 3iuj_A 327 RQQ--VL-TVHSGSGYLFAEYMVDATARVEQFDYEGK--RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRF 401 (693)
T ss_dssp CSS--CE-EEEEETTEEEEEEEETTEEEEEEECTTSC--EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEE
T ss_pred CCC--EE-EEEEECCEEEEEEEECCeeEEEEEECCCC--eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEE
Confidence 211 12 66678888876654 44 5788887642 223332 344568888899998877654433 788888
Q ss_pred eCC
Q psy13076 420 NAK 422 (423)
Q Consensus 420 ~~~ 422 (423)
|++
T Consensus 402 d~~ 404 (693)
T 3iuj_A 402 EPK 404 (693)
T ss_dssp CTT
T ss_pred ECC
Confidence 865
No 223
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.20 E-value=3.4e-08 Score=88.09 Aligned_cols=200 Identities=11% Similarity=0.086 Sum_probs=122.3
Q ss_pred EEEEECCC-CCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCccee
Q psy13076 135 NVAKYSPS-GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVG 213 (423)
Q Consensus 135 ~~~~~sp~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (423)
-+..|+|+ +..+.+...++.|..||..+++.. .. .....+..++++|+|+.++. . .. -...++.+++....
T Consensus 16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~---~~~~~~~~i~~~~dG~l~v~-~-~~--~l~~~d~~~g~~~~ 87 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV---TMDAPVSSVALRQSGGYVAT-I-GT--KFCALNWKEQSAVV 87 (297)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE---ECSSCEEEEEEBTTSSEEEE-E-TT--EEEEEETTTTEEEE
T ss_pred cCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE---eCCCceEEEEECCCCCEEEE-E-CC--eEEEEECCCCcEEE
Confidence 35678885 455566667899999998766532 11 12467899999999994443 3 22 22344444443221
Q ss_pred --ccc--CCCcceeEEEEecCCCeeEEEEeC----------CCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEE-E
Q psy13076 214 --EIS--GQSKPINSCDFKPSRPFRIITGSE----------DNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHF-A 278 (423)
Q Consensus 214 --~~~--~~~~~i~~~~~~~~~~~~~~s~s~----------d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l-~ 278 (423)
... .....++.+.++|++.+.+.+... .+.+..++.. .+... ........+.++|+|+|+.+ +
T Consensus 88 ~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 88 LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTTSCEEEE
T ss_pred EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCCCCEEEE
Confidence 111 123457889999998753333221 2345555532 22211 12223446789999999866 4
Q ss_pred EEEecCeEEEEEC--CCcccee--cc-cccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeee
Q psy13076 279 SAGFDGKVFLYDG--ASADLVS--EL-GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEF 344 (423)
Q Consensus 279 s~s~dg~i~vwd~--~~~~~~~--~~-~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~ 344 (423)
+.+.++.|..|+. .++.... .+ ....+.+.+.+++++++|++.++....+.|..||..+++.+..+
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i 236 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTV 236 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEE
T ss_pred ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEE
Confidence 5556789999986 4444211 11 11123356789999999998888888888999998877655443
No 224
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.20 E-value=9.1e-08 Score=88.30 Aligned_cols=307 Identities=9% Similarity=0.080 Sum_probs=174.7
Q ss_pred eCCEEEEEeccceEEEEeccCCCCceeecccc---------cCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecc
Q psy13076 15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGH---------NKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATL 85 (423)
Q Consensus 15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh---------~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~ 85 (423)
+++.+..++.+|.|..+|..++.... .+.-. ...+.+ ....++..++.++.|+.|..+|.++++.+-..
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIW-SVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEE-EEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceee-eecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence 67888888999999999987654332 22211 122322 22224567888889999999999998765443
Q ss_pred cCCC--CCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceE-----EEEEECCCCCEEEEEccCCcEEEE
Q psy13076 86 PRTQ--RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAV-----NVAKYSPSGFYIASGDISGKVRIW 158 (423)
Q Consensus 86 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i-----~~~~~sp~~~~l~s~~~d~~i~vw 158 (423)
.... ...++. . ++..++.+.+..+..++.++++....+....... ..... .+..++.+..++.+..+
T Consensus 130 ~~~~~~~~~p~~-~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~ 203 (376)
T 3q7m_A 130 KVAGEALSRPVV-S---DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAV 203 (376)
T ss_dssp ECSSCCCSCCEE-E---TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEE
T ss_pred eCCCceEcCCEE-E---CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEE
Confidence 2211 111211 1 3444555556678888888887766554322111 11111 14467778888999999
Q ss_pred EcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEE
Q psy13076 159 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITG 238 (423)
Q Consensus 159 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~ 238 (423)
|..+++..+.......... ..+ . .+.. ....++ +. +. .++.+
T Consensus 204 d~~tG~~~w~~~~~~~~~~-~~~------~-------------~~~~-----------~~~~p~----~~--~~-~v~~~ 245 (376)
T 3q7m_A 204 LMEQGQMIWQQRISQATGS-TEI------D-------------RLSD-----------VDTTPV----VV--NG-VVFAL 245 (376)
T ss_dssp ETTTCCEEEEEECCC-------------------------------C-----------CCCCCE----EE--TT-EEEEE
T ss_pred ECCCCcEEEEEecccCCCC-ccc------c-------------cccc-----------cCCCcE----EE--CC-EEEEE
Confidence 9988776654432210000 000 0 0000 000000 00 11 25556
Q ss_pred eCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCC
Q psy13076 239 SEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDG 318 (423)
Q Consensus 239 s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 318 (423)
+.++.+..++....+....... .....+.. ++..+..++.++.+..+|..+++........ .......... .+
T Consensus 246 ~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~--~~ 318 (376)
T 3q7m_A 246 AYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDL-LHRLLTSPVL--YN 318 (376)
T ss_dssp CTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTT-TTSCCCCCEE--ET
T ss_pred ecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeeccc-CCCcccCCEE--EC
Confidence 6677788887665554443321 12233333 3567888888999999999999876554311 1112222222 24
Q ss_pred CeEEEEeCCCcEEEEecCCcceeeeeeeC-ceeEeeEEEEEecCcEEEEEeCCCcEEEEe
Q psy13076 319 TQLLTASGDKTCKLWDIETKSAVSEFLMG-NQVEDQQVSCLWQGDYLLTVSLSGFISYLD 377 (423)
Q Consensus 319 ~~l~s~s~d~~i~iwd~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~ 377 (423)
..|+.++.++.+..+|..+++.+..+... .... ......+..|..++.+|.++.|+
T Consensus 319 ~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~---~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 319 GNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQ---TEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCTTCBC---SCCEEETTEEEEEBTTSCEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEecCCCcce---eCCEEECCEEEEEeCCCEEEEEe
Confidence 57888888999999999999887665432 1111 11122467788888899888875
No 225
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.18 E-value=1.4e-08 Score=90.84 Aligned_cols=241 Identities=10% Similarity=0.065 Sum_probs=144.7
Q ss_pred CceeecccccCceeEEEEeCCCC-eEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEE
Q psy13076 38 TPIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIR 116 (423)
Q Consensus 38 ~~~~~~~gh~~~V~~l~~~~~~~-~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 116 (423)
..+..+...........|+|+++ +++++..++.|..|+.. +...
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~---------------------------------- 79 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVD---------------------------------- 79 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEE----------------------------------
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEE----------------------------------
Confidence 34445555556678899999988 77888888999999863 2210
Q ss_pred ecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCcee-EEeeecC-CCCCeeEEEECCCCCeEEEE-
Q psy13076 117 NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI-LKNEFHP-IGGPIKDIAWSPDNQRMVVV- 193 (423)
Q Consensus 117 ~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~-~~~~~~~-~~~~v~~v~~s~~~~~~~~~- 193 (423)
.+..+...+..+.++|+|+++++...++.|.+|+.. ++.. ....... ....+.+++++|+|...++-
T Consensus 80 ---------~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~ 149 (305)
T 3dr2_A 80 ---------VLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDP 149 (305)
T ss_dssp ---------EEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECC
T ss_pred ---------EEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCc
Confidence 011123356788999999977776667889999875 3321 1111111 11346789999999866642
Q ss_pred --EcCC----------ceeeEEEeec--CCcceecccCCCcceeEEEEecCCCeeEEEEeC-----CCeEEEEcCCCcee
Q psy13076 194 --GEGR----------ERFGHVFMSE--TGTSVGEISGQSKPINSCDFKPSRPFRIITGSE-----DNTIAVFEGPPFKF 254 (423)
Q Consensus 194 --~~~~----------~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~-----d~~i~~~~~~~~~~ 254 (423)
+... .....++..+ ++.. ..+. .....+.++|+|++..+.++.+. ++.|..|+.....+
T Consensus 150 ~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~-~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l 227 (305)
T 3dr2_A 150 PFGLRKPSQGCPADPELAHHSVYRLPPDGSPL-QRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL 227 (305)
T ss_dssp SGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC-EEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE
T ss_pred CCCccccccccccccccCCCeEEEEcCCCCcE-EEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc
Confidence 1100 0012344333 3332 2222 33456789999998864444443 27898887543221
Q ss_pred e--eec-cccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEE
Q psy13076 255 K--MTK-QEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCK 331 (423)
Q Consensus 255 ~--~~~-~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~ 331 (423)
. ... .........++++++|++.++ +.+ .|.+|+. +++.+..+..+ . .+.+++|+|+++.|..++.++..+
T Consensus 228 ~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~-~g~~~~~~~~~--~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 228 HDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS-DGQLLGHIPTP--G-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp EEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEECT-TSCEEEEEECS--S-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred cCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEECC-CCCEEEEEECC--C-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 1 111 111233456889999985544 444 4999997 56665555432 2 478899999998888877765333
No 226
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.17 E-value=1.3e-09 Score=99.94 Aligned_cols=172 Identities=10% Similarity=0.082 Sum_probs=120.1
Q ss_pred ceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce---------eee-eccccccCeEEEEECCCCCEEEEEEecCeEEEEE
Q psy13076 221 PINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK---------FKM-TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYD 290 (423)
Q Consensus 221 ~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~---------~~~-~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd 290 (423)
+++.+++++.... +++|+.+ .+.+|+..... ... ....+.. |+.++| ++++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gl-l~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSL-FVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTE-EEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCE-EEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 5788889988875 6667766 55558632211 111 1223556 999999 99999998 889999999
Q ss_pred CCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCC
Q psy13076 291 GASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLS 370 (423)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~ 370 (423)
..+......+ ..|...+.++.+.+. .+++++.||++.+||++++.... . . .....++.+++| ++.|..+
T Consensus 113 v~sl~~~~~~--~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~--~--~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 113 LEELSEFRTV--TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-L--A--QNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp SSSTTCEEEE--EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-E--E--ESEEEEEECSSE--EEEEETT
T ss_pred chhhhccCcc--ceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-c--c--CCceEEEEcCCc--eEEEEcC
Confidence 8876544333 346677888877654 38889999999999999876543 1 1 122233334455 7889999
Q ss_pred CcEEEEecCCCCCc-eEEe------c---cCCCceeEEEecCCCCeEEE
Q psy13076 371 GFISYLDVNNPSTP-IRVI------K---GHNKPITALALSPDRGTVFT 409 (423)
Q Consensus 371 ~~i~~~~~~~~~~~-~~~~------~---~h~~~v~~i~~sp~~~~l~s 409 (423)
|.++.|+....+.. .+.+ . +|...|.+|.|.+++.++++
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 99999977654321 2333 2 48889999999999999886
No 227
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.13 E-value=9e-08 Score=86.54 Aligned_cols=222 Identities=12% Similarity=0.098 Sum_probs=128.1
Q ss_pred EEEEEECCCC-CEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcce
Q psy13076 134 VNVAKYSPSG-FYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSV 212 (423)
Q Consensus 134 i~~~~~sp~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (423)
.....|+|++ .++.+...++.|..||..+++... .. ....+.+++|+|+|+.+++. .
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~---~~~~v~~i~~~~dg~l~v~~--~---------------- 108 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA---LPFMGSALAKISDSKQLIAS--D---------------- 108 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE---CSSCEEEEEEEETTEEEEEE--T----------------
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE---CCCcceEEEEeCCCeEEEEE--C----------------
Confidence 3466789974 455666678899999987654321 11 13457777777777654432 1
Q ss_pred ecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeee--cc--ccccCeEEEEECCCCCEEEEEEe------
Q psy13076 213 GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT--KQ--EHSRFVQAVRYSPSGSHFASAGF------ 282 (423)
Q Consensus 213 ~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~--~~--~~~~~i~~l~~s~~g~~l~s~s~------ 282 (423)
+.|.+|+....+.... .. .....+..++++|+|+++++...
T Consensus 109 -----------------------------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~ 159 (326)
T 2ghs_A 109 -----------------------------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETG 159 (326)
T ss_dssp -----------------------------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTT
T ss_pred -----------------------------CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCC
Confidence 1122232211111100 00 11234778999999997665443
Q ss_pred cCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEE-EEeCCCcEEEEecC--Cc-cee--eeeee-C-ceeEeeE
Q psy13076 283 DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLL-TASGDKTCKLWDIE--TK-SAV--SEFLM-G-NQVEDQQ 354 (423)
Q Consensus 283 dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-s~s~d~~i~iwd~~--~~-~~i--~~~~~-~-~~~~~~~ 354 (423)
.+.|..++ +++. ..+. .+......++|+|+++.|. +.+.++.|.+||+. ++ +.. ..+.. . .......
T Consensus 160 ~~~l~~~~--~g~~-~~~~--~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~g 234 (326)
T 2ghs_A 160 AGSIYHVA--KGKV-TKLF--ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDG 234 (326)
T ss_dssp CEEEEEEE--TTEE-EEEE--EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEE
T ss_pred ceEEEEEe--CCcE-EEee--CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCe
Confidence 24666666 3432 2221 1234567899999998664 44557899999985 44 321 11111 0 1112223
Q ss_pred EEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEec-CCCCeE-EEecCC
Q psy13076 355 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALS-PDRGTV-FTGSHD 413 (423)
Q Consensus 355 ~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~s-p~~~~l-~s~s~D 413 (423)
+....+|...++...++.|..|+.. ...+..+..+...+++++|+ |+++.| ++...+
T Consensus 235 i~~d~~G~lwva~~~~~~v~~~d~~--g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 235 SVCDAEGHIWNARWGEGAVDRYDTD--GNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEECTTSCEEEEEETTTEEEEECTT--CCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred eEECCCCCEEEEEeCCCEEEEECCC--CCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 4445577766666667889999873 23445566666789999998 888766 444444
No 228
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.13 E-value=3.6e-08 Score=88.26 Aligned_cols=148 Identities=11% Similarity=0.012 Sum_probs=98.2
Q ss_pred eEEEEeCC-EEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076 10 VSCLWQGD-YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT 88 (423)
Q Consensus 10 ~~~~~~~~-~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~ 88 (423)
.+.++||+ ++++...++.|..|+.. .+ ...+..+...+..++++++++++++...++.|.+|+.+ +.........
T Consensus 50 p~~~~~g~~l~~~d~~~~~i~~~~~~--g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~ 125 (305)
T 3dr2_A 50 PAWWEAQRTLVWSDLVGRRVLGWRED--GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRY 125 (305)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEETT--SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEE
T ss_pred CeEeCCCCEEEEEECCCCEEEEEeCC--CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEecc
Confidence 44556788 56666778999999873 22 45666667789999999999977776677899999986 4332111110
Q ss_pred ---CCCCceEEeeCCCCCeEEEe----c--------------CCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEE
Q psy13076 89 ---QRGQPIVLGGDPKGKNFLYT----N--------------GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA 147 (423)
Q Consensus 89 ---~~~~~~~~~~~~~~~~~~~~----~--------------~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 147 (423)
....+-.+..+++|+.++.. . ...+..++.++++..... .....+.++|+||++.|+
T Consensus 126 ~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~ly 203 (305)
T 3dr2_A 126 AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLY 203 (305)
T ss_dssp TTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEE
T ss_pred CCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEE
Confidence 01112235667888877741 1 235666676666655443 334567899999999887
Q ss_pred EEccC------CcEEEEEcCCC
Q psy13076 148 SGDIS------GKVRIWDTVNK 163 (423)
Q Consensus 148 s~~~d------~~i~vwd~~~~ 163 (423)
.++.. +.|.+|++...
T Consensus 204 v~~~~~~~~~~~~i~~~~~~~~ 225 (305)
T 3dr2_A 204 VSQTPEQGHGSVEITAFAWRDG 225 (305)
T ss_dssp EEECCC---CCCEEEEEEEETT
T ss_pred EEecCCcCCCCCEEEEEEecCC
Confidence 77665 68888887644
No 229
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.13 E-value=8.7e-09 Score=94.08 Aligned_cols=273 Identities=11% Similarity=0.019 Sum_probs=164.8
Q ss_pred eEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEc----------cCCcEEEEEcCCCceeEEeeecCC-----CC
Q psy13076 112 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD----------ISGKVRIWDTVNKEHILKNEFHPI-----GG 176 (423)
Q Consensus 112 ~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~----------~d~~i~vwd~~~~~~~~~~~~~~~-----~~ 176 (423)
.+.+.|.++.+....+..-..+ .+.++||+++++.+. .+++|.+||..+.+.......... ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 6778888888887777543345 699999999998886 368899999998877655443210 12
Q ss_pred CeeEEEECCCCCeEEEEEcCCceeeEE--EeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC---
Q psy13076 177 PIKDIAWSPDNQRMVVVGEGRERFGHV--FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP--- 251 (423)
Q Consensus 177 ~v~~v~~s~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~--- 251 (423)
....++|+|||++++++.........+ ++..+ +..+.... +..+.|.+...+++.+.|+.+.+.+...
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~----~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~ 197 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS----CFHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS----CCCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC----ceEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence 346799999999999886543222333 33322 33332110 1123444444455666777777777554
Q ss_pred --ceeeee----ccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCcc--ceeccccc-----c---cCCCeEEEEEC
Q psy13076 252 --FKFKMT----KQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD--LVSELGNP-----A---HKGGVYAVAWK 315 (423)
Q Consensus 252 --~~~~~~----~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~-----~---~~~~i~~l~~~ 315 (423)
.+.... ......+. + .+++..++..+. +.+.+.|..+.. ....+... . .......++++
T Consensus 198 ~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s 272 (368)
T 1mda_H 198 AAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL 272 (368)
T ss_dssp CCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred cCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEc
Confidence 222210 11111222 3 566666666666 999999986532 22222110 0 01111227899
Q ss_pred CCCCeEEEEeC---------CCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEE-EEEe-CCCcEEEEecCCCCCc
Q psy13076 316 PDGTQLLTASG---------DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYL-LTVS-LSGFISYLDVNNPSTP 384 (423)
Q Consensus 316 ~~~~~l~s~s~---------d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l-~~~~-~~~~i~~~~~~~~~~~ 384 (423)
|+++.|..+.. +..+.++|+.+.+.+.++..+. ....+.+.++|+.+ ++.. .++.+.++|..+.+ .
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k-v 349 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ-D 349 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESSSCE-E
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECCCCc-E
Confidence 99988776533 2356699999999888775443 34556677889854 5555 58999999998853 3
Q ss_pred eEEeccCCCceeEEEecC
Q psy13076 385 IRVIKGHNKPITALALSP 402 (423)
Q Consensus 385 ~~~~~~h~~~v~~i~~sp 402 (423)
++.+... +.-+.+++.+
T Consensus 350 v~~I~vg-~~P~~i~~~~ 366 (368)
T 1mda_H 350 QSSVELD-KGPESLSVQN 366 (368)
T ss_dssp EEECCCC-SCCCEEECCC
T ss_pred EEEEECC-CCCCEEEeec
Confidence 4555433 3345666554
No 230
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.13 E-value=2.8e-08 Score=99.12 Aligned_cols=261 Identities=14% Similarity=0.163 Sum_probs=152.8
Q ss_pred CCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECC---CCCeEEEEEcC----CceeeEEEeecCCcceecc
Q psy13076 143 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP---DNQRMVVVGEG----RERFGHVFMSETGTSVGEI 215 (423)
Q Consensus 143 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 215 (423)
+..++.++.|+.|..+|.++++.++.............+..+| ++. +++.... .......++..+++.+...
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 5578888889999999999998877655420000000111112 333 3332211 1233445555666655433
Q ss_pred cCC-------------------------------CcceeEEEEecCCCeeEEEEeCCC-------------------eEE
Q psy13076 216 SGQ-------------------------------SKPINSCDFKPSRPFRIITGSEDN-------------------TIA 245 (423)
Q Consensus 216 ~~~-------------------------------~~~i~~~~~~~~~~~~~~s~s~d~-------------------~i~ 245 (423)
... ...-....++|.... ++.++.++ .|.
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~-vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~ 278 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNL-LYIGVGNGSLWDPKWRSQAKGDNLFLSSIV 278 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTE-EEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCE-EEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 210 001124677776664 56666665 388
Q ss_pred EEcCCCceeeeeccc--cc-------cCeEEEEECCCCC---EEEEEEecCeEEEEECCCccceecccccc---------
Q psy13076 246 VFEGPPFKFKMTKQE--HS-------RFVQAVRYSPSGS---HFASAGFDGKVFLYDGASADLVSELGNPA--------- 304 (423)
Q Consensus 246 ~~~~~~~~~~~~~~~--~~-------~~i~~l~~s~~g~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--------- 304 (423)
.+|..+.+.....+. |. ..........+|+ .++.++.+|.++++|..+++.+.......
T Consensus 279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~ 358 (689)
T 1yiq_A 279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDM 358 (689)
T ss_dssp EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEET
T ss_pred EEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCc
Confidence 898877776665443 21 1122222233565 78889999999999999998763221100
Q ss_pred -----------------cC---------C--CeEEEEECCCCCeEEEEeC------------------------------
Q psy13076 305 -----------------HK---------G--GVYAVAWKPDGTQLLTASG------------------------------ 326 (423)
Q Consensus 305 -----------------~~---------~--~i~~l~~~~~~~~l~s~s~------------------------------ 326 (423)
.. + .-..++++|+..++.+...
T Consensus 359 ~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 438 (689)
T 1yiq_A 359 KTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGM 438 (689)
T ss_dssp TTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECC
T ss_pred cCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccc
Confidence 00 0 0013788888877776532
Q ss_pred ---------------CCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEec-c
Q psy13076 327 ---------------DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIK-G 390 (423)
Q Consensus 327 ---------------d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~ 390 (423)
+++|+.||+.+++.+-++........ -.+...|..+..++.++.++.||..+++. +..++ +
T Consensus 439 ~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~--g~~~tagglvf~gt~dg~l~a~D~~tG~~-lw~~~~~ 515 (689)
T 1yiq_A 439 MPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNG--GTLSTAGNLVFEGSADGRVIAYAADTGEK-LWEQPAA 515 (689)
T ss_dssp CCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCC--CEEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECS
T ss_pred cCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccC--ccceECCCEEEEECCCCcEEEEECCCCcc-ceeeeCC
Confidence 37799999999987766554432211 12334778888899999999999999754 34443 3
Q ss_pred CCCceeEEEecCCCCeEE
Q psy13076 391 HNKPITALALSPDRGTVF 408 (423)
Q Consensus 391 h~~~v~~i~~sp~~~~l~ 408 (423)
+...-.-+.|+.+|+.++
T Consensus 516 ~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 516 SGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp SCCCSCCEEEEETTEEEE
T ss_pred CCcccCceEEEECCEEEE
Confidence 322234577788888543
No 231
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.11 E-value=2.7e-07 Score=85.07 Aligned_cols=307 Identities=10% Similarity=0.110 Sum_probs=171.5
Q ss_pred CCCeEEEecCCCceEEeecCCcceeecccCCCC-------CCceEEe-eCCCCCeEEEecCCeEEEEecCCCcccccccC
Q psy13076 58 DRGTVFTGSHDGFITRWNAKTEYIFATLPRTQR-------GQPIVLG-GDPKGKNFLYTNGNSVIIRNIENPAISDIYTE 129 (423)
Q Consensus 58 ~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 129 (423)
.+..|+.++.++.|..+|.++++.+-....... ....... ...++..++.+.+..+..++.++++....+..
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 356788888899999999998876543322110 1111111 11245555556667888889888877655543
Q ss_pred CcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCC
Q psy13076 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG 209 (423)
Q Consensus 130 h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (423)
.......... .+..++.++.++.|..+|.++++..+...... ++.. ......
T Consensus 132 ~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~---~~~~--~~~~~~--------------------- 183 (376)
T 3q7m_A 132 AGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDM---PSLS--LRGESA--------------------- 183 (376)
T ss_dssp SSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC----------CCCCC---------------------
T ss_pred CCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCC---Ccee--ecCCCC---------------------
Confidence 3211111111 24467778889999999998887765543221 1100 000000
Q ss_pred cceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecccccc-------CeEEEEECC--CCCEEEEE
Q psy13076 210 TSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSR-------FVQAVRYSP--SGSHFASA 280 (423)
Q Consensus 210 ~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~-------~i~~l~~s~--~g~~l~s~ 280 (423)
++ .. . . .++.+..++.+..++....+.......... .+..+...| .+..+..+
T Consensus 184 -----------~~----~~-~-~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~ 245 (376)
T 3q7m_A 184 -----------PT----TA-F-G-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFAL 245 (376)
T ss_dssp -----------CE----EE-T-T-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEE
T ss_pred -----------cE----EE-C-C-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEE
Confidence 00 00 1 1 244455566666666544443332221100 000000111 24577778
Q ss_pred EecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEec
Q psy13076 281 GFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQ 360 (423)
Q Consensus 281 s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~ 360 (423)
+.++.+..+|.++++....... .....+.. ++..+..++.++.+..+|..+++.+-.......... ......
T Consensus 246 ~~~g~l~~~d~~tG~~~w~~~~----~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~--~~~~~~ 317 (376)
T 3q7m_A 246 AYNGNLTALDLRSGQIMWKREL----GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLL--TSPVLY 317 (376)
T ss_dssp CTTSCEEEEETTTCCEEEEECC----CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCC--CCCEEE
T ss_pred ecCcEEEEEECCCCcEEeeccC----CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcc--cCCEEE
Confidence 8899999999999987755432 22344444 356777788899999999999986644431110000 111225
Q ss_pred CcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076 361 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420 (423)
Q Consensus 361 g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~ 420 (423)
+..|..++.+|.+..+|..+++. +.........+.+.-.. .+..|+.++.||.+..|+
T Consensus 318 ~~~l~v~~~~g~l~~~d~~tG~~-~~~~~~~~~~~~~~~~~-~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 318 NGNLVVGDSEGYLHWINVEDGRF-VAQQKVDSSGFQTEPVA-ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCE-EEEEECCTTCBCSCCEE-ETTEEEEEBTTSCEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcE-EEEEecCCCcceeCCEE-ECCEEEEEeCCCEEEEEe
Confidence 77888899999999999988643 33333322333221111 256777888999999987
No 232
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.07 E-value=1.6e-08 Score=91.34 Aligned_cols=294 Identities=8% Similarity=-0.028 Sum_probs=173.1
Q ss_pred CCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCC-Cce
Q psy13076 16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRG-QPI 94 (423)
Q Consensus 16 ~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~-~~~ 94 (423)
++.|..++.++.|..+| .+ .+....+..+...+.++...+++. |..++.+ |..+|. +++.+......... ...
T Consensus 30 ~g~l~v~t~~~~l~~~d-~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~ 103 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAIN-TD-GSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDF 103 (330)
T ss_dssp TSCEECSSTTTTTEEEC-TT-SCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCE
T ss_pred CCeEEEEcCCCEEEEEC-CC-CcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCc
Confidence 45566678889999999 54 344444454555667777777665 4445555 888886 44433222211111 111
Q ss_pred EEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCC
Q psy13076 95 VLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPI 174 (423)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 174 (423)
.+. ++..++.+.+..+..++.+ ++....+..+...+.++...+++. +..++.++.|..+|.. ++....... .
T Consensus 104 ~~~---~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~--~ 175 (330)
T 3hxj_A 104 TIF---EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKT--N 175 (330)
T ss_dssp EEE---TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEEC--S
T ss_pred eEE---CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEec--C
Confidence 121 5555555556778888877 655555544444556666777776 4456678999999987 555443332 2
Q ss_pred CCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCcee
Q psy13076 175 GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF 254 (423)
Q Consensus 175 ~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~ 254 (423)
...+.++...+++...+.. .. ...++ ..+............+.++...+++. +..++.++.+..++.. ...
T Consensus 176 ~~~~~~~~~d~~g~l~v~t---~~--l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~--l~v~t~~~gl~~~~~~-g~~ 246 (330)
T 3hxj_A 176 DAITSAASIGKDGTIYFGS---DK--VYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT--IYVTSLDGHLYAINPD-GTE 246 (330)
T ss_dssp SCCCSCCEECTTCCEEEES---SS--EEEEC-TTSCEEEEECCSSCCCSCCEECTTSC--EEEEETTTEEEEECTT-SCE
T ss_pred CCceeeeEEcCCCEEEEEe---CE--EEEEC-CCCcEEEEEccCCcceeceEECCCCe--EEEEcCCCeEEEECCC-CCE
Confidence 3456667777777644432 21 22333 44444444444445567777777654 6667778888888743 232
Q ss_pred eeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEe
Q psy13076 255 KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWD 334 (423)
Q Consensus 255 ~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd 334 (423)
..........+..+.+.++| .|..++.+|.|..+|. +++....... ....+.++..+++|+. ..++.+|.+++..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~--~~~~~~~~~~d~~g~l-~~gt~~G~~~~~~ 321 (330)
T 3hxj_A 247 KWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFET--GSWIIATPVIDENGTI-YFGTRNGKFYALF 321 (330)
T ss_dssp EEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEEC--SSCCCSCCEECTTCCE-EEECTTSCEEEEE
T ss_pred eEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEc--CCccccceEEcCCCEE-EEEcCCCeEEEEe
Confidence 23333333333445566566 5666778889999995 6665544432 2344567777778765 4578899998877
Q ss_pred cCC
Q psy13076 335 IET 337 (423)
Q Consensus 335 ~~~ 337 (423)
.+.
T Consensus 322 ~~~ 324 (330)
T 3hxj_A 322 NLE 324 (330)
T ss_dssp C--
T ss_pred ccc
Confidence 654
No 233
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.05 E-value=8.1e-08 Score=95.57 Aligned_cols=300 Identities=11% Similarity=0.078 Sum_probs=173.1
Q ss_pred CCeEEEecCCeEEEEecCCCcccccccCCcc-----------eEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEee
Q psy13076 102 GKNFLYTNGNSVIIRNIENPAISDIYTEHSC-----------AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE 170 (423)
Q Consensus 102 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~-----------~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 170 (423)
+..++.+..+.+...|.++++.+..+..... ....+.+ ++..++.++.|+.|..+|.++++.++...
T Consensus 78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 155 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQN 155 (677)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence 3344444445566666666665554432210 0011222 45678888899999999999998877655
Q ss_pred ec-CCC--CCeeE-EEECCCCCeEEEEEcC----CceeeEEEeecCCcceecccCCCc----------------------
Q psy13076 171 FH-PIG--GPIKD-IAWSPDNQRMVVVGEG----RERFGHVFMSETGTSVGEISGQSK---------------------- 220 (423)
Q Consensus 171 ~~-~~~--~~v~~-v~~s~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 220 (423)
.. ... ..+.+ ... .+..+++.... .......++..+++.+........
T Consensus 156 ~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 156 TFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp TTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred CCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 43 100 11111 000 12333333221 123445566666665544322110
Q ss_pred ----------ceeEEEEecCCCeeEEEEeCCC-------------------eEEEEcCCCceeeeeccc--cc-------
Q psy13076 221 ----------PINSCDFKPSRPFRIITGSEDN-------------------TIAVFEGPPFKFKMTKQE--HS------- 262 (423)
Q Consensus 221 ----------~i~~~~~~~~~~~~~~s~s~d~-------------------~i~~~~~~~~~~~~~~~~--~~------- 262 (423)
....+.++|.... ++.++.++ .|..+|..+.+.....+. |.
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~-vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~ 312 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNT-MYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST 312 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTE-EEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred ceeEeCCCcccccceeEcCCCCE-EEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccC
Confidence 1124577777665 44454443 488888877766655432 21
Q ss_pred cCeEEEEECCCC---CEEEEEEecCeEEEEECCCccceecccccccC--------CC-e---------------------
Q psy13076 263 RFVQAVRYSPSG---SHFASAGFDGKVFLYDGASADLVSELGNPAHK--------GG-V--------------------- 309 (423)
Q Consensus 263 ~~i~~l~~s~~g---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--------~~-i--------------------- 309 (423)
.....+....+| +.++.++.+|.++++|..+++.+......... +. +
T Consensus 313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~ 392 (677)
T 1kb0_A 313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA 392 (677)
T ss_dssp SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc
Confidence 112233344477 67899999999999999999886554321000 00 0
Q ss_pred ---EEEEECCCCCeEEEEeCC-------------------------------------------CcEEEEecCCcceeee
Q psy13076 310 ---YAVAWKPDGTQLLTASGD-------------------------------------------KTCKLWDIETKSAVSE 343 (423)
Q Consensus 310 ---~~l~~~~~~~~l~s~s~d-------------------------------------------~~i~iwd~~~~~~i~~ 343 (423)
..++++|++.++.+...+ +.|..||+.+++.+-+
T Consensus 393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~ 472 (677)
T 1kb0_A 393 HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS 472 (677)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEee
Confidence 157889988888775432 7899999999987766
Q ss_pred eeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEec-cCCCceeEEEecCCCCeEEE
Q psy13076 344 FLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIK-GHNKPITALALSPDRGTVFT 409 (423)
Q Consensus 344 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~h~~~v~~i~~sp~~~~l~s 409 (423)
+........ ..+...|..+..++.++.++.||..+.+.. ..+. ++...-.-+.++++++.++.
T Consensus 473 ~~~~~~~~~--g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l-w~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 473 VEHVSPWNG--GTLTTAGNVVFQGTADGRLVAYHAATGEKL-WEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEESSSCCC--CEEEETTTEEEEECTTSEEEEEETTTCCEE-EEEECSSCCCSCCEEEEETTEEEEE
T ss_pred cCCCCCCcC--cceEeCCCEEEEECCCCcEEEEECCCCcee-eeeeCCCCcccCCEEEEeCCEEEEE
Confidence 544332211 223457888888999999999999987553 4433 44333445667788875543
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.05 E-value=7.2e-08 Score=87.02 Aligned_cols=299 Identities=13% Similarity=0.044 Sum_probs=163.0
Q ss_pred EEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCc
Q psy13076 52 ALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHS 131 (423)
Q Consensus 52 ~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~ 131 (423)
+..+..++ .|..++.++.|..|| .+++.+...... ......+..+++|..++.+.+ +..++. +++....+....
T Consensus 24 ~~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~-~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~ 97 (330)
T 3hxj_A 24 SPILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSG-EIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTKK 97 (330)
T ss_dssp CCEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGG-GEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC--
T ss_pred CceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecC-CCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEECCC
Confidence 34444444 466777889999999 777665443211 001111233445554443333 666664 555544443332
Q ss_pred ceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcc
Q psy13076 132 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTS 211 (423)
Q Consensus 132 ~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (423)
.......+. +..+..++.++.|..+|.. ++........ ...+.++..
T Consensus 98 ~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~--~~~~~~~~~---------------------------- 144 (330)
T 3hxj_A 98 AIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTK--KAIYATPIV---------------------------- 144 (330)
T ss_dssp ---CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECS--SCCCSCCEE----------------------------
T ss_pred CcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCC--CceeeeeEE----------------------------
Confidence 222222222 4456667777888888866 4433322211 111111122
Q ss_pred eecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEEC
Q psy13076 212 VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDG 291 (423)
Q Consensus 212 ~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~ 291 (423)
.+++. +..++.++.+..++.. .+...........+.++...++|.+.+. + +.|..+|
T Consensus 145 ----------------~~~g~--l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d- 201 (330)
T 3hxj_A 145 ----------------SEDGT--IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAIN- 201 (330)
T ss_dssp ----------------CTTSC--EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEEC-
T ss_pred ----------------cCCCE--EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEEC-
Confidence 22222 4445666777777755 3333333333445566777778875554 3 7899999
Q ss_pred CCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCC
Q psy13076 292 ASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSG 371 (423)
Q Consensus 292 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~ 371 (423)
.+++....... ....+.++..+++|... .++.++.+..+|. +++.+..+....... .... ...+..|..++.++
T Consensus 202 ~~g~~~~~~~~--~~~~~~~~~~~~~g~l~-v~t~~~gl~~~~~-~g~~~~~~~~~~~~~-~~~~-~~~~g~l~v~t~~g 275 (330)
T 3hxj_A 202 PDGTEKWNFYA--GYWTVTRPAISEDGTIY-VTSLDGHLYAINP-DGTEKWRFKTGKRIE-SSPV-IGNTDTIYFGSYDG 275 (330)
T ss_dssp TTSCEEEEECC--SSCCCSCCEECTTSCEE-EEETTTEEEEECT-TSCEEEEEECSSCCC-SCCE-ECTTSCEEEECTTC
T ss_pred CCCcEEEEEcc--CCcceeceEECCCCeEE-EEcCCCeEEEECC-CCCEeEEeeCCCCcc-ccce-EcCCCeEEEecCCC
Confidence 67665544432 33457778888887654 4566778888874 455444443322111 1111 12356677888888
Q ss_pred cEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076 372 FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA 421 (423)
Q Consensus 372 ~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~ 421 (423)
.+..+|. +. ..+.........+.++...+++++. .++.+|.+++-..
T Consensus 276 gl~~~d~-~g-~~~~~~~~~~~~~~~~~~d~~g~l~-~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 276 HLYAINP-DG-TEKWNFETGSWIIATPVIDENGTIY-FGTRNGKFYALFN 322 (330)
T ss_dssp EEEEECT-TS-CEEEEEECSSCCCSCCEECTTCCEE-EECTTSCEEEEEC
T ss_pred CEEEECC-CC-cEEEEEEcCCccccceEEcCCCEEE-EEcCCCeEEEEec
Confidence 9999985 32 3333444345567788877777654 5788999987654
No 235
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.98 E-value=6.8e-07 Score=88.81 Aligned_cols=336 Identities=12% Similarity=0.106 Sum_probs=170.7
Q ss_pred eCCEEEEEeccceEEEEeccCCCCceeecccccC----------ce-eEEEEeCCCCeEEEecCCCceEEeecCCcceee
Q psy13076 15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNK----------PI-TALALSPDRGTVFTGSHDGFITRWNAKTEYIFA 83 (423)
Q Consensus 15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~----------~V-~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~ 83 (423)
.++.|..++.++.|.-+|..++...- .++.... .+ ..+++ .+..|+.++.|+.|..+|.++++++=
T Consensus 65 ~~g~vyv~~~~~~v~AlD~~tG~~~W-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 141 (668)
T 1kv9_A 65 HDGVIYTSMSWSRVIAVDAASGKELW-RYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIW 141 (668)
T ss_dssp ETTEEEEEEGGGEEEEEETTTCCEEE-EECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ECCEEEEECCCCeEEEEECCCChhce-EECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEee
Confidence 46677778889999999987754433 2221111 11 11222 35578888899999999999998764
Q ss_pred cccCCC-------CCCceEEeeCCCCCeEEEec------CCeEEEEecCCCcccccccCC--------------------
Q psy13076 84 TLPRTQ-------RGQPIVLGGDPKGKNFLYTN------GNSVIIRNIENPAISDIYTEH-------------------- 130 (423)
Q Consensus 84 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~h-------------------- 130 (423)
...... ...+++. ++..++... +..+..+|.++++....+...
T Consensus 142 ~~~~~~~~~~~~~~~~P~v~----~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~ 217 (668)
T 1kv9_A 142 SQQTTDPAKPYSITGAPRVV----KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTW 217 (668)
T ss_dssp EEECSCTTSSCBCCSCCEEE----TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTC
T ss_pred eeccCCCCCcceecCCCEEE----CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccC
Confidence 443211 1111111 233333222 245777777777665544210
Q ss_pred -----------cceEEEEEECCCCCEEEEEccCC-------------------cEEEEEcCCCceeEEeeecCCC-----
Q psy13076 131 -----------SCAVNVAKYSPSGFYIASGDISG-------------------KVRIWDTVNKEHILKNEFHPIG----- 175 (423)
Q Consensus 131 -----------~~~i~~~~~sp~~~~l~s~~~d~-------------------~i~vwd~~~~~~~~~~~~~~~~----- 175 (423)
........+.|+...++.+..++ .|..+|.++++..+..+...+.
T Consensus 218 ~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~ 297 (668)
T 1kv9_A 218 QGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFT 297 (668)
T ss_dssp CSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred CccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcccccc
Confidence 01112357888777888777665 3888888888877665543211
Q ss_pred --CCeeEEEECCCCC--eEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC
Q psy13076 176 --GPIKDIAWSPDNQ--RMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP 251 (423)
Q Consensus 176 --~~v~~v~~s~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~ 251 (423)
.+.....+..+|+ .+++.+ ........++..+++.+........+ ....+.+.....+... +.. |+...
T Consensus 298 ~~~~~~~~d~~~~G~~~~~v~~~-~~~G~l~~lD~~tG~~l~~~~~~~~~-w~~~~d~~~g~p~~~~--~~~---~~~~~ 370 (668)
T 1kv9_A 298 ATQQITLAELNIDGKPRKVLMQA-PKNGFFYVLDRTNGKLISAEKFGKVT-WAEKVDLATGRPVEAP--GVR---YEKEP 370 (668)
T ss_dssp CCSCEEEEEEEETTEEEEEEEEC-CTTSEEEEEETTTCCEEEEEESSCCC-SEEEECTTTCCEEECT--TTT---CSSSC
T ss_pred CCCCcEEEEeccCCcEEEEEEEE-CCCCEEEEEECCCCCEeccccccccc-cccccccccCCccccc--ccc---ccCCe
Confidence 2222222222443 122222 22334455556666655433221100 0001111000000000 000 00000
Q ss_pred ceeeeeccccccCeEEEEECCCCCEEEE------------------------------------EEecCeEEEEECCCcc
Q psy13076 252 FKFKMTKQEHSRFVQAVRYSPSGSHFAS------------------------------------AGFDGKVFLYDGASAD 295 (423)
Q Consensus 252 ~~~~~~~~~~~~~i~~l~~s~~g~~l~s------------------------------------~s~dg~i~vwd~~~~~ 295 (423)
........-...-..++++|+..++.. ...+|.|.-||..+++
T Consensus 371 -~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~ 449 (668)
T 1kv9_A 371 -IVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQK 449 (668)
T ss_dssp -EEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTE
T ss_pred -eEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCc
Confidence 000000000000112445555444332 1235889999999998
Q ss_pred ceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCc-EEEEEe
Q psy13076 296 LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGD-YLLTVS 368 (423)
Q Consensus 296 ~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~-~l~~~~ 368 (423)
...+... ........+...+.+++.++.|+.++.||.++++.+..+..........+....+|+ +++.++
T Consensus 450 ~~W~~~~---~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 450 AAWKVPY---PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp EEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EEEEccC---CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 8766532 122223334456788899999999999999999998887665444434444445676 444443
No 236
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.97 E-value=2.3e-07 Score=85.35 Aligned_cols=223 Identities=10% Similarity=0.089 Sum_probs=134.6
Q ss_pred CCCCe-EEEecCCCceEEeecCCc----ceeecccCC----CCC--CceEEeeCCCCCeEEEecC-------CeEEEEec
Q psy13076 57 PDRGT-VFTGSHDGFITRWNAKTE----YIFATLPRT----QRG--QPIVLGGDPKGKNFLYTNG-------NSVIIRNI 118 (423)
Q Consensus 57 ~~~~~-l~sg~~D~~i~vW~~~~~----~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~-------~~~~i~~~ 118 (423)
+++++ +++|-.+++|.+.|+.+. ++.+.+... ..+ .+--+...|+| .++...+ +.+.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 77776 456778999999999765 444443200 001 12224566888 5555433 47889998
Q ss_pred CCCcccccccC--Cc-ceEEEEEECCCCCEEEEEc-------------------cCCcEEEEEcCCCceeEEeeecCCCC
Q psy13076 119 ENPAISDIYTE--HS-CAVNVAKYSPSGFYIASGD-------------------ISGKVRIWDTVNKEHILKNEFHPIGG 176 (423)
Q Consensus 119 ~~~~~~~~~~~--h~-~~i~~~~~sp~~~~l~s~~-------------------~d~~i~vwd~~~~~~~~~~~~~~~~~ 176 (423)
++.++...+.. .. .--..+.|+|+++.+++.. ...+|.+||+.+.+............
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 88877766642 22 1123467899999999885 47899999998765444333321112
Q ss_pred CeeEEEE--CCCCCeEEEEEc-----CCceeeEEEeecCCcc-------------eeccc---C----CCcceeEEEEec
Q psy13076 177 PIKDIAW--SPDNQRMVVVGE-----GRERFGHVFMSETGTS-------------VGEIS---G----QSKPINSCDFKP 229 (423)
Q Consensus 177 ~v~~v~~--s~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------------~~~~~---~----~~~~i~~~~~~~ 229 (423)
....+.| +|+++++.+++. ...... ++..+.+.- ...+. . ....+..+.++|
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~-v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~ 330 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIW-LWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL 330 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEE-EEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEE-EEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence 3345656 999999888775 433222 222211110 00010 0 013467889999
Q ss_pred CCCeeEEEEeCCCeEEEEcCC-C--ceeeeecccc--------------ccCeEEEEECCCCCEEEEEE
Q psy13076 230 SRPFRIITGSEDNTIAVFEGP-P--FKFKMTKQEH--------------SRFVQAVRYSPSGSHFASAG 281 (423)
Q Consensus 230 ~~~~~~~s~s~d~~i~~~~~~-~--~~~~~~~~~~--------------~~~i~~l~~s~~g~~l~s~s 281 (423)
++.++.++.-..+.|.+|+.. + .++....... ......++++|||++|+++.
T Consensus 331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999977777778999999863 2 2222211111 01357789999999988875
No 237
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.96 E-value=9.3e-10 Score=101.42 Aligned_cols=259 Identities=11% Similarity=0.059 Sum_probs=132.6
Q ss_pred eCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCC----C
Q psy13076 15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQ----R 90 (423)
Q Consensus 15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~----~ 90 (423)
+++.+++++.||.|..||..++ +..-.++. +++.+..+..++..+++++.|+.|+.||.++++.+-...... .
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG-~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTG-SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTC-CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCC-CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 6899999999999999999874 44445555 566666666778888999999999999998886543332110 0
Q ss_pred CCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEee
Q psy13076 91 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE 170 (423)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 170 (423)
..++. ..++..++.+.+..+..+|.++++....+..+. ...++|++..+++++.|+.|+.||.++++..+...
T Consensus 85 ~sp~~---~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 85 ASPCR---SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT 157 (369)
T ss_dssp TCSCC--------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred cCceE---ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence 11111 112333333445678899999998888776654 23567788899999999999999998877654332
Q ss_pred ecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC
Q psy13076 171 FHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP 250 (423)
Q Consensus 171 ~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~ 250 (423)
.... ....+.++. ..++ .++.++.++.+..||..
T Consensus 158 ~~~~----~~~~~~~~~----------------------------------------~~~~--~v~~~~~dg~v~a~d~~ 191 (369)
T 2hz6_A 158 YFDY----AASLPEDDV----------------------------------------DYKM--SHFVSNGDGLVVTVDSE 191 (369)
T ss_dssp EEEE----CCBCCCCCT----------------------------------------TCCC--CEEEEETSCEEEEECTT
T ss_pred cccc----cCccccCCc----------------------------------------cccc--eEEEECCCCEEEEEECC
Confidence 2100 000000000 0001 25567788889999877
Q ss_pred CceeeeeccccccCeEEEEECCCCCEEEE--EEecCeEEEEECCCcc----ceecccccccCCCeEEEEECC--CCCeEE
Q psy13076 251 PFKFKMTKQEHSRFVQAVRYSPSGSHFAS--AGFDGKVFLYDGASAD----LVSELGNPAHKGGVYAVAWKP--DGTQLL 322 (423)
Q Consensus 251 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~s--~s~dg~i~vwd~~~~~----~~~~~~~~~~~~~i~~l~~~~--~~~~l~ 322 (423)
..+...........+....++++|...+. ...++.++.+|..+++ ...+.... +.+. +| .+..|.
T Consensus 192 tG~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~~~~~~~W~~~~~---~~~~----sp~~~~g~ly 264 (369)
T 2hz6_A 192 SGDVLWIQNYASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMSGEVGRITKWKYPFP---KETE----AKSKLTPTLY 264 (369)
T ss_dssp TCCEEEEEECSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHHHHHHHHHTSCCCCC---CHHH----HHHHSEEEEC
T ss_pred CCcEEEEecCCCceEEEEEecCCceEeccceeecccceeeeehhcCCcccceeeeeccC---cccc----ccccccceEE
Confidence 66655554432222334456667653211 1124556667766666 44333211 1111 22 345677
Q ss_pred EEeCCCcEEEEecC
Q psy13076 323 TASGDKTCKLWDIE 336 (423)
Q Consensus 323 s~s~d~~i~iwd~~ 336 (423)
.++.||.+..++..
T Consensus 265 v~~~~G~l~al~~~ 278 (369)
T 2hz6_A 265 VGKYSTSLYASPSM 278 (369)
T ss_dssp BEECSSCEECCEEE
T ss_pred EecccCCEEecCcc
Confidence 78888988888775
No 238
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.95 E-value=6.3e-05 Score=76.36 Aligned_cols=387 Identities=12% Similarity=0.067 Sum_probs=214.5
Q ss_pred CEEEEEeccceEEEEeccCCCCceeeccc------ccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC--
Q psy13076 17 DYLLTVSLSGFISYLDVNNPSTPIRVIKG------HNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT-- 88 (423)
Q Consensus 17 ~~~~~~~~dg~i~~~d~~~~~~~~~~~~g------h~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~-- 88 (423)
+.|..++.++.|..+|..+ ..+..+.. ....|.++...+++.+.+ |..++.+..+|.++++........
T Consensus 128 g~lwi~t~~~gl~~~~~~~--~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~ 204 (781)
T 3v9f_A 128 KGLWVCTYYRGIEYLDIAT--GKFTHYNKSTVPALPSEQTWTATEAEDGKLYI-GHVEGGLSILSLNDKSVKHFVHDPQN 204 (781)
T ss_dssp SEEEEEESSSCEEEEETTT--TEEEEESTTTCTTCSCCCEEEEEEEETTEEEE-EETTTEEEEEETTTTEEEEECC----
T ss_pred CCEEEEECCCCeeEEECCC--CeEEeeccCcccCCCccceEEEEECCCCCEEE-EecCCCeEEEcCCCCceEeeecCCCC
Confidence 4455556455677888653 22222221 134688888888777665 555556888998776543211100
Q ss_pred ----CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccC-------CcceEEEEEECCCCCEEEEEccCCcEEE
Q psy13076 89 ----QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTE-------HSCAVNVAKYSPSGFYIASGDISGKVRI 157 (423)
Q Consensus 89 ----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------h~~~i~~~~~sp~~~~l~s~~~d~~i~v 157 (423)
.......+..+++|.+.+.+.+ .+.+++.+++........ ....|.++...++|.+.+ |...+.|.+
T Consensus 205 ~~~l~~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~~Gl~~ 282 (781)
T 3v9f_A 205 PNSLPGNDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWI-ATELNGIMI 282 (781)
T ss_dssp ----CCSSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEE-EESSSCEEE
T ss_pred cccCCCCceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEE-EeCCCCeEE
Confidence 1123345667788888887765 788888776655433221 235689999888887555 444456888
Q ss_pred EEcCCCceeEEee--------e----cCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecc----------
Q psy13076 158 WDTVNKEHILKNE--------F----HPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEI---------- 215 (423)
Q Consensus 158 wd~~~~~~~~~~~--------~----~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 215 (423)
+|..+........ . .-....|.++...++|..-+.. ...+. ..+...... ...+
T Consensus 283 ~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt-~~~Gl--~~~~~~~~~-~~~~~~~~~~~~~~ 358 (781)
T 3v9f_A 283 LDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGT-WGGGI--NFISNAPPT-FHTWSYSPTQMNES 358 (781)
T ss_dssp EETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEE-BSSCE--EEECSSCCS-CEEEC----CCCSS
T ss_pred ECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEe-cCCeE--EEeCCCCCc-ceeeccCccccccC
Confidence 8876543211110 0 0123568888888888754433 12221 122222111 1111
Q ss_pred cCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeec---cccccCeEEEEECCCCCEEEEEEecCeEEEEECC
Q psy13076 216 SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK---QEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGA 292 (423)
Q Consensus 216 ~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~---~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~ 292 (423)
......|.++...+++. +..|+.++.+..|+.......... ......|.++...++|.+.+ |+.++-+..++.+
T Consensus 359 ~l~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~ 435 (781)
T 3v9f_A 359 SLSNKVVSSVCDDGQGK--LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTR 435 (781)
T ss_dssp CCSSSCEEEEEECTTSC--EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSS
T ss_pred CCCCcceEEEEEcCCCC--EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCC
Confidence 11234577777776664 566776777888875433322111 12235688888888887554 6666678899887
Q ss_pred Cccceecccc-cccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeC-c---eeEeeEEEEEecCcEEEEE
Q psy13076 293 SADLVSELGN-PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMG-N---QVEDQQVSCLWQGDYLLTV 367 (423)
Q Consensus 293 ~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~-~---~~~~~~~~~~~~g~~l~~~ 367 (423)
+++.. .+.. ......|.++..+++|++.+. +. +-+..+|..+++........ . ......+....+|. |-.|
T Consensus 436 ~~~~~-~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWig 511 (781)
T 3v9f_A 436 LKKFQ-IIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR-FWIG 511 (781)
T ss_dssp SCEEE-ECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC-EEEE
T ss_pred CCcEE-EeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC-EEEE
Confidence 66532 2221 123457899999988876654 44 45888998776532211111 0 11112222223444 4455
Q ss_pred eCCCcEEEEecCCCCCceEEecc----CCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076 368 SLSGFISYLDVNNPSTPIRVIKG----HNKPITALALSPDRGTVFTGSHDGFITRWNAK 422 (423)
Q Consensus 368 ~~~~~i~~~~~~~~~~~~~~~~~----h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~ 422 (423)
+..+.+..++..+.. +..+.. ....|+++...+++++.++.. +|.+..||.+
T Consensus 512 t~~~Gl~~~~~~~~~--~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~ 567 (781)
T 3v9f_A 512 TFGGGVGIYTPDMQL--VRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSAR 567 (781)
T ss_dssp ESSSCEEEECTTCCE--EEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTT
T ss_pred EcCCCEEEEeCCCCe--EEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCC
Confidence 554557778765432 222211 134689999988988766554 6665777754
No 239
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.93 E-value=7.7e-05 Score=75.69 Aligned_cols=402 Identities=9% Similarity=0.021 Sum_probs=220.4
Q ss_pred ccceeeEEEE---eCCEEEEEeccceEEEEeccCCCCceeecc-----c---ccCceeEEEEeC--CCCeEEEecCCCce
Q psy13076 5 VEDQQVSCLW---QGDYLLTVSLSGFISYLDVNNPSTPIRVIK-----G---HNKPITALALSP--DRGTVFTGSHDGFI 71 (423)
Q Consensus 5 ~~~~~~~~~~---~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~-----g---h~~~V~~l~~~~--~~~~l~sg~~D~~i 71 (423)
+++..|.+.. +|..|-.++.++.+..+|..+.. +..+. . ....|.++...+ ++.+.+ +..++.|
T Consensus 63 l~~n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~--f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi-~t~~~gl 139 (781)
T 3v9f_A 63 ITGNELNEVYTDPVQPVIWIATQRAGLNAYNYETQS--FSVYQYNPEDPQSLITNDVTHITSSVQAGKGLWV-CTYYRGI 139 (781)
T ss_dssp CSCSCEEEEEECSSSSEEEEEESSSCEEEEETTTTE--EEEECCCTTCSSSCSCSCEEEEEECSSTTSEEEE-EESSSCE
T ss_pred ccccccceEEEcCCCCEEEEEeCCCCcceECCCCCe--EEeeccccCCCCCcccCcceEEEecCccCCCEEE-EECCCCe
Confidence 5555555554 35514446667578899976422 22221 1 123688888877 666544 5545568
Q ss_pred EEeecCCcceeecccCC----CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCccccccc-------CCcceEEEEEEC
Q psy13076 72 TRWNAKTEYIFATLPRT----QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYT-------EHSCAVNVAKYS 140 (423)
Q Consensus 72 ~vW~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-------~h~~~i~~~~~s 140 (423)
..+|.++++........ .......+..+++|...+.+.+..+..++.++........ -....|.++...
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d 219 (781)
T 3v9f_A 140 EYLDIATGKFTHYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKD 219 (781)
T ss_dssp EEEETTTTEEEEESTTTCTTCSCCCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEEC
T ss_pred eEEECCCCeEEeeccCcccCCCccceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEc
Confidence 88888776543221100 1122234555667777777666678888876654433211 113568899888
Q ss_pred CCCCEEEEEccCCcEEEEEcCCCceeEEeee-----cCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCccee--
Q psy13076 141 PSGFYIASGDISGKVRIWDTVNKEHILKNEF-----HPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVG-- 213 (423)
Q Consensus 141 p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-----~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 213 (423)
++|.+.+... + .+.+||..+.+...-... ......|.++...++|...+. +...+. ..+.........
T Consensus 220 ~~g~lwigt~-~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~~~Gl--~~~~~~~~~~~~~~ 294 (781)
T 3v9f_A 220 TNGNIWIGTS-K-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIA-TELNGI--MILDLQQNQFLLPE 294 (781)
T ss_dssp TTCCEEEEET-T-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEE-ESSSCE--EEEETTCC------
T ss_pred CCCCEEEEeC-C-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEE-eCCCCe--EEECCCCCeeeeee
Confidence 9888766543 3 688899765443211000 112356888888888775443 321221 223322221100
Q ss_pred c------------ccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeec---------cccccCeEEEEECC
Q psy13076 214 E------------ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK---------QEHSRFVQAVRYSP 272 (423)
Q Consensus 214 ~------------~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~---------~~~~~~i~~l~~s~ 272 (423)
. -......|.++...+++. +..|+.++.|..++.....+.... ......|.++...+
T Consensus 295 ~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~ 372 (781)
T 3v9f_A 295 QIRFEFIREGDNNYSLSNASARYIFQDSFNN--IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG 372 (781)
T ss_dssp ---CEEECBCSSTTSBSSSCEEEEEECSSCC--EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT
T ss_pred ccccccccCCCCCCCCCCCeEEEEEEeCCCC--EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC
Confidence 0 011234577777777664 667777788888875433222111 11235688998888
Q ss_pred CCCEEEEEEecCeEEEEECCCccceeccc-ccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeC--ce
Q psy13076 273 SGSHFASAGFDGKVFLYDGASADLVSELG-NPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMG--NQ 349 (423)
Q Consensus 273 ~g~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~--~~ 349 (423)
+|.+ ..|+.++-|..++..++....... .......|.++...++|++.+ |+.++-+..+|.++++. ..+... ..
T Consensus 373 ~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~-~~~~~~~~~~ 449 (781)
T 3v9f_A 373 QGKL-WIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKF-QIIELEKNEL 449 (781)
T ss_dssp TSCE-EEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEE-EECCSTTTCC
T ss_pred CCCE-EEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcE-EEeccCCCCC
Confidence 8864 456666778899876543221110 012345689999888887665 56656688899876643 222110 01
Q ss_pred eEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEecc----CCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076 350 VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKG----HNKPITALALSPDRGTVFTGSHDGFITRWNAK 422 (423)
Q Consensus 350 ~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~----h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~ 422 (423)
.....+....+ ..|-.|+. +.+..++..+.......... ....|+++...+++++.+....+| +..+|..
T Consensus 450 ~~v~~i~~d~~-g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~ 523 (781)
T 3v9f_A 450 LDVRVFYEDKN-KKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPD 523 (781)
T ss_dssp CCEEEEEECTT-SEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTT
T ss_pred CeEEEEEECCC-CCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCC
Confidence 11112222223 34555555 66888887664332211111 136799999999888766544344 5556643
No 240
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.90 E-value=2.1e-06 Score=79.11 Aligned_cols=224 Identities=12% Similarity=0.115 Sum_probs=136.6
Q ss_pred CCCCeEEEEEcCCceeeEEEeecCC----cceeccc-------CCCcceeEEEEecCCCeeEEEEeCC------CeEEEE
Q psy13076 185 PDNQRMVVVGEGRERFGHVFMSETG----TSVGEIS-------GQSKPINSCDFKPSRPFRIITGSED------NTIAVF 247 (423)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-------~~~~~i~~~~~~~~~~~~~~s~s~d------~~i~~~ 247 (423)
++++++++.+.... ..++++..+. +....+. ........+...|++ +++++..+ +.+.++
T Consensus 93 ~~r~~l~v~~l~s~-~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vl 169 (462)
T 2ece_A 93 IERRFLIVPGLRSS-RIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILML 169 (462)
T ss_dssp CCSCEEEEEBTTTC-CEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEE
T ss_pred ccCCEEEEccCCCC-eEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEE
Confidence 77888777665443 3455554322 2222221 112245566778888 35555444 789999
Q ss_pred cCCCceeeeecccc--c-cCeEEEEECCCCCEEEEEE-------------------ecCeEEEEECCCccceeccccccc
Q psy13076 248 EGPPFKFKMTKQEH--S-RFVQAVRYSPSGSHFASAG-------------------FDGKVFLYDGASADLVSELGNPAH 305 (423)
Q Consensus 248 ~~~~~~~~~~~~~~--~-~~i~~l~~s~~g~~l~s~s-------------------~dg~i~vwd~~~~~~~~~~~~~~~ 305 (423)
|..+++........ . ..-..+.|+|+++.+++.. .+.+|.+||+.+++...++.....
T Consensus 170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~ 249 (462)
T 2ece_A 170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE 249 (462)
T ss_dssp CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence 98877776655422 2 2233578899999888875 368999999998877776653211
Q ss_pred CCCeEEEEE--CCCCCeEEEEe------CCCcEEEEecCCccee--eeeeeCc-----------------eeEeeEEEEE
Q psy13076 306 KGGVYAVAW--KPDGTQLLTAS------GDKTCKLWDIETKSAV--SEFLMGN-----------------QVEDQQVSCL 358 (423)
Q Consensus 306 ~~~i~~l~~--~~~~~~l~s~s------~d~~i~iwd~~~~~~i--~~~~~~~-----------------~~~~~~~~~~ 358 (423)
......+.| +|+++++..++ .+++|.+|....++.- ....... ......+.++
T Consensus 250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS 329 (462)
T 2ece_A 250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS 329 (462)
T ss_dssp EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence 123455656 99999887766 5668877765443211 1110000 1123456677
Q ss_pred ecCcEEEEEe-CCCcEEEEecCCCCCc--eEEe-cc-------C------CCceeEEEecCCCCeEEEec
Q psy13076 359 WQGDYLLTVS-LSGFISYLDVNNPSTP--IRVI-KG-------H------NKPITALALSPDRGTVFTGS 411 (423)
Q Consensus 359 ~~g~~l~~~~-~~~~i~~~~~~~~~~~--~~~~-~~-------h------~~~v~~i~~sp~~~~l~s~s 411 (423)
++|++|.+.. ..+.|.++|+.++..+ +..+ .| | ...-..++++|||++|+.+.
T Consensus 330 ~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 330 LDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 8999987665 5678999998654332 2222 12 1 01358899999999988776
No 241
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.85 E-value=1.7e-07 Score=89.29 Aligned_cols=236 Identities=13% Similarity=0.131 Sum_probs=147.8
Q ss_pred CCCCeEEEec--CCeEEEEecCCCcccccccCC-cceEEEEEE-C-CCCCEEEEEc------------------cCCcEE
Q psy13076 100 PKGKNFLYTN--GNSVIIRNIENPAISDIYTEH-SCAVNVAKY-S-PSGFYIASGD------------------ISGKVR 156 (423)
Q Consensus 100 ~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~h-~~~i~~~~~-s-p~~~~l~s~~------------------~d~~i~ 156 (423)
++|+.+.... +..+.+-++++-++.+++.-- ...+..+++ + |+++++..++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 4666555543 457888899888877644321 235788887 5 9999998884 356799
Q ss_pred EEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCce-------------eeE---------------------
Q psy13076 157 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRER-------------FGH--------------------- 202 (423)
Q Consensus 157 vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~-------------~~~--------------------- 202 (423)
+.|.++.+........ +....++++|+|+++++.+...+. ...
T Consensus 179 vID~~t~~v~~qI~Vg---g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~ 255 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVS---GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 255 (595)
T ss_dssp EEETTTTEEEEEEEES---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEECCCCeEEEEEEeC---CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence 9999887665544332 234668899999999988754311 111
Q ss_pred --EEeecC--Ccc-eecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce------------eeeeccccccCe
Q psy13076 203 --VFMSET--GTS-VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK------------FKMTKQEHSRFV 265 (423)
Q Consensus 203 --~~~~~~--~~~-~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~------------~~~~~~~~~~~i 265 (423)
+.+..+ +.. +..+. -.....++.++|++.+.++++..++++.++|....+ ..... ......
T Consensus 256 V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP 333 (595)
T 1fwx_A 256 VKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGP 333 (595)
T ss_dssp EEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCE
T ss_pred EEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCc
Confidence 112221 111 11111 112456789999999988888899999999976442 11111 122346
Q ss_pred EEEEECCCCCEEEEEEecCeEEEEECCC----------ccceeccccc---ccCCCeEEEEECCCCCeEEEEeC---CCc
Q psy13076 266 QAVRYSPSGSHFASAGFDGKVFLYDGAS----------ADLVSELGNP---AHKGGVYAVAWKPDGTQLLTASG---DKT 329 (423)
Q Consensus 266 ~~l~~s~~g~~l~s~s~dg~i~vwd~~~----------~~~~~~~~~~---~~~~~i~~l~~~~~~~~l~s~s~---d~~ 329 (423)
..++|+|+|...++.-.|++|.+||..+ .+.+.++... +|...-.++.++|||++|+++.. |+.
T Consensus 334 ~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~ 413 (595)
T 1fwx_A 334 LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRF 413 (595)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSS
T ss_pred ceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccc
Confidence 7899999993334455699999999876 3334443221 22111123356899999998744 443
Q ss_pred ----------EEEEecCCcce
Q psy13076 330 ----------CKLWDIETKSA 340 (423)
Q Consensus 330 ----------i~iwd~~~~~~ 340 (423)
-.++|+..+++
T Consensus 414 ~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 414 LNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp CCCCSSCCEEEEEEECSSSSC
T ss_pred ccCCCCCCCcceEEEcCCCcE
Confidence 17899976554
No 242
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.82 E-value=1.7e-05 Score=69.11 Aligned_cols=234 Identities=9% Similarity=-0.041 Sum_probs=132.6
Q ss_pred EEEecCCeEEEEecCCCccc-----ccccCCcceEEEEEECCCCCEEEEE-ccCCcEEEEEcCCCceeEEeeecCCCCCe
Q psy13076 105 FLYTNGNSVIIRNIENPAIS-----DIYTEHSCAVNVAKYSPSGFYIASG-DISGKVRIWDTVNKEHILKNEFHPIGGPI 178 (423)
Q Consensus 105 ~~~~~~~~~~i~~~~~~~~~-----~~~~~h~~~i~~~~~sp~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~v 178 (423)
++++....+...+++..... ..+......+..++++|++..+..+ ..++.|..++........ .........
T Consensus 4 l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~--~~~~~~~~p 81 (267)
T 1npe_A 4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT--IIRQDLGSP 81 (267)
T ss_dssp EEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE--EECTTCCCE
T ss_pred EEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE--EEECCCCCc
Confidence 34444445666666544321 1122123456789999976655544 456899999986543221 111111356
Q ss_pred eEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeC--CCeEEEEcCCCceeee
Q psy13076 179 KDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSE--DNTIAVFEGPPFKFKM 256 (423)
Q Consensus 179 ~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~--d~~i~~~~~~~~~~~~ 256 (423)
..++++|++..+.++...... ...+..+.................++++|.+..+.++... .+.|..++........
T Consensus 82 ~~ia~d~~~~~lyv~d~~~~~-I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~ 160 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDSQLDR-IEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI 160 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred cEEEEEecCCeEEEEECCCCE-EEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE
Confidence 889999988777776554433 2233333222111122222456889999976654444433 4677777643222111
Q ss_pred eccccccCeEEEEECCCCCEEEEEE-ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEec
Q psy13076 257 TKQEHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDI 335 (423)
Q Consensus 257 ~~~~~~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~ 335 (423)
...........++++|++..|..+. ..+.|.+++.........+. ......+++.. .+..+++....+.|..+|.
T Consensus 161 ~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~---~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~ 236 (267)
T 1npe_A 161 LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE---GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDL 236 (267)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE---CCCSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec---CCCCceEEEEe-CCEEEEEECCCCeEEEEeC
Confidence 1112234578899999877665544 56789999986543322221 12334677764 4455555556789999999
Q ss_pred CCcceeeeee
Q psy13076 336 ETKSAVSEFL 345 (423)
Q Consensus 336 ~~~~~i~~~~ 345 (423)
.+++.+..+.
T Consensus 237 ~~g~~~~~i~ 246 (267)
T 1npe_A 237 AISKEMDTFH 246 (267)
T ss_dssp TTTEEEEEEC
T ss_pred CCCCceEEEc
Confidence 9887776654
No 243
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.77 E-value=2.8e-05 Score=67.78 Aligned_cols=252 Identities=10% Similarity=0.014 Sum_probs=140.4
Q ss_pred EEEEEccCCcEEEEEcCCCceeE---EeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcc
Q psy13076 145 YIASGDISGKVRIWDTVNKEHIL---KNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKP 221 (423)
Q Consensus 145 ~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (423)
+|+.++. +.|+.+++....... ...+......+..++|++++..+.++...... ...+..+.......+......
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~-I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPS-IGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTE-EEEEESSSCCCEEEECTTCCC
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCE-EEEEecCCCCcEEEEECCCCC
Confidence 4444443 467778776432110 00011001235789999988877776654433 233444433322222223346
Q ss_pred eeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEe---cCeEEEEECCCcccee
Q psy13076 222 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGF---DGKVFLYDGASADLVS 298 (423)
Q Consensus 222 i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~---dg~i~vwd~~~~~~~~ 298 (423)
...++++|.+..+.++....+.|.+++...................++++|++..|..+.. .+.|..++... ....
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~ 159 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRR 159 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcE
Confidence 7889999877665666667788998875432211111122245688999997666555543 36888887643 2222
Q ss_pred cccccccCCCeEEEEECCCCCeE-EEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEe-CCCcEEEE
Q psy13076 299 ELGNPAHKGGVYAVAWKPDGTQL-LTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVS-LSGFISYL 376 (423)
Q Consensus 299 ~~~~~~~~~~i~~l~~~~~~~~l-~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~-~~~~i~~~ 376 (423)
.+.. ........++++|++..| ++-...+.|..+|....... .+..... ....+ ..++..+..+. .++.|..+
T Consensus 160 ~~~~-~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-~~~~~~~-~P~gi--~~d~~~lyva~~~~~~v~~~ 234 (267)
T 1npe_A 160 ILAQ-DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR-KVLEGLQ-YPFAV--TSYGKNLYYTDWKTNSVIAM 234 (267)
T ss_dssp EEEC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE-EEEECCC-SEEEE--EEETTEEEEEETTTTEEEEE
T ss_pred EEEE-CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE-EEecCCC-CceEE--EEeCCEEEEEECCCCeEEEE
Confidence 2211 122457899999987655 55556789999998754322 2211110 11122 23466665554 56789999
Q ss_pred ecCCCCCceEEec-cCCCceeEEEecCCCC
Q psy13076 377 DVNNPSTPIRVIK-GHNKPITALALSPDRG 405 (423)
Q Consensus 377 ~~~~~~~~~~~~~-~h~~~v~~i~~sp~~~ 405 (423)
|..+... +..+. +.......+++.|++.
T Consensus 235 d~~~g~~-~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 235 DLAISKE-MDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp ETTTTEE-EEEECCSSCCCCCCEEEECSCC
T ss_pred eCCCCCc-eEEEccccccccceeeecCccC
Confidence 8876533 33333 2223467888888764
No 244
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.76 E-value=5.2e-06 Score=80.80 Aligned_cols=80 Identities=13% Similarity=0.070 Sum_probs=53.2
Q ss_pred cCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCc
Q psy13076 283 DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGD 362 (423)
Q Consensus 283 dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~ 362 (423)
+|.|..||..+++...+.... ..+.+..+...+..++.++.|+.++.||.++++.+.++..........+....+|.
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~---~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~ 519 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEK---FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGK 519 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred CCeEEEEECCCCCEEEEecCC---CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCE
Confidence 478999999999877665321 12222222334567777899999999999999998887665544333444445666
Q ss_pred EEE
Q psy13076 363 YLL 365 (423)
Q Consensus 363 ~l~ 365 (423)
.++
T Consensus 520 ~yv 522 (571)
T 2ad6_A 520 QYI 522 (571)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 245
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.71 E-value=1.7e-05 Score=77.32 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=53.2
Q ss_pred cCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCc
Q psy13076 283 DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGD 362 (423)
Q Consensus 283 dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~ 362 (423)
+|.+.-||..+++.+.+.... ....+-.+...+..++.++.|+.++.||.++++.+-++..........+....+|+
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~ 528 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKMER---FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGT 528 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred cCeEEEEECCCCCEEeEecCC---CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCE
Confidence 478899999999876655321 11111112235667888999999999999999998888665544444555555776
Q ss_pred EEE
Q psy13076 363 YLL 365 (423)
Q Consensus 363 ~l~ 365 (423)
..+
T Consensus 529 qyv 531 (599)
T 1w6s_A 529 QYV 531 (599)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 246
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.71 E-value=1.8e-08 Score=92.84 Aligned_cols=190 Identities=12% Similarity=-0.003 Sum_probs=101.0
Q ss_pred CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCc-
Q psy13076 142 SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSK- 220 (423)
Q Consensus 142 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 220 (423)
++..+++++.|+.|..||.++++..+.... +++.+..+.+++..+++.+ .+.....++.++++.+.....+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----~~~~s~p~~~~g~~~v~~s--~dg~l~a~d~~tG~~~w~~~~~~~~ 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE----DPVLQVPTHVEEPAFLPDP--NDGSLYTLGSKNNEGLTKLPFTIPE 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC----CCSCCCC-----CCEEECT--TTCCEEEC-----CCSEECSCCHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC----CCceecceEcCCCEEEEeC--CCCEEEEEECCCCceeeeeeccCcc
Confidence 577899999999999999999988776544 3344444555665544422 222234555556655443332211
Q ss_pred cee-EEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceec
Q psy13076 221 PIN-SCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299 (423)
Q Consensus 221 ~i~-~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~ 299 (423)
.+. +..+. .+. .+++++.++.++.||..+.+.......+. ...++|++..+++++.|+.|+.||.++++....
T Consensus 82 ~~~~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~ 155 (369)
T 2hz6_A 82 LVQASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWN 155 (369)
T ss_dssp HHTTCSCC-------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred ccccCceEe-cCC-EEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEe
Confidence 111 11111 122 36678889999999987666655544332 234567888999999999999999999987655
Q ss_pred ccccccCCCeEEEEECCCC---CeEEEEeCCCcEEEEecCCcceeeeeeeC
Q psy13076 300 LGNPAHKGGVYAVAWKPDG---TQLLTASGDKTCKLWDIETKSAVSEFLMG 347 (423)
Q Consensus 300 ~~~~~~~~~i~~l~~~~~~---~~l~s~s~d~~i~iwd~~~~~~i~~~~~~ 347 (423)
+.... ....+++++. ..+++++.|+.++.||..+++.+-++...
T Consensus 156 ~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 202 (369)
T 2hz6_A 156 ATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA 202 (369)
T ss_dssp EEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS
T ss_pred Eeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC
Confidence 43211 1223344432 56777889999999999999876655433
No 247
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.64 E-value=0.00018 Score=70.08 Aligned_cols=80 Identities=20% Similarity=0.264 Sum_probs=53.9
Q ss_pred cCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCc
Q psy13076 283 DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGD 362 (423)
Q Consensus 283 dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~ 362 (423)
+|.|.-||..+++.+.+.... ..+..-.....+.+++.++.|+.++.||.++++.+-++..........+....+|+
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~ 541 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred cceEEEEECCCCCEEEEecCC---CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCE
Confidence 578999999999877655321 11111111224667888999999999999999999888766554444455555776
Q ss_pred EEE
Q psy13076 363 YLL 365 (423)
Q Consensus 363 ~l~ 365 (423)
..+
T Consensus 542 qYv 544 (582)
T 1flg_A 542 QYL 544 (582)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 248
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.64 E-value=6.3e-05 Score=67.53 Aligned_cols=244 Identities=11% Similarity=0.088 Sum_probs=133.2
Q ss_pred cccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC------------------CCCCceEEeeCC-CCC
Q psy13076 43 IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT------------------QRGQPIVLGGDP-KGK 103 (423)
Q Consensus 43 ~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~------------------~~~~~~~~~~~~-~~~ 103 (423)
+.|.-.....+++.+++.+++++..++.|..|+.+++......... ....+..+..++ +++
T Consensus 14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~ 93 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ 93 (322)
T ss_dssp EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE
T ss_pred cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc
Confidence 3333334567889999988888889999999998765432111000 012345566776 677
Q ss_pred eEEEecCCeEEEEecCCCcccccc---cC-CcceEEEEEECC-CCCEEEEEcc-----------------CCcEEEEEcC
Q psy13076 104 NFLYTNGNSVIIRNIENPAISDIY---TE-HSCAVNVAKYSP-SGFYIASGDI-----------------SGKVRIWDTV 161 (423)
Q Consensus 104 ~~~~~~~~~~~i~~~~~~~~~~~~---~~-h~~~i~~~~~sp-~~~~l~s~~~-----------------d~~i~vwd~~ 161 (423)
+++...+..+...+.+++...... .+ .....+.+++.| +|.+.++-.. ++.|..+|..
T Consensus 94 l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 94 LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 777766666777776655432211 11 113467789999 8876665432 2456666654
Q ss_pred CCceeEE-eeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeC
Q psy13076 162 NKEHILK-NEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSE 240 (423)
Q Consensus 162 ~~~~~~~-~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~ 240 (423)
+++.... ..+ .....++|+|+++.+.++...
T Consensus 174 ~~~~~~~~~~~----~~p~gia~~~dg~~lyv~d~~-------------------------------------------- 205 (322)
T 2fp8_A 174 TKETTLLLKEL----HVPGGAEVSADSSFVLVAEFL-------------------------------------------- 205 (322)
T ss_dssp TTEEEEEEEEE----SCCCEEEECTTSSEEEEEEGG--------------------------------------------
T ss_pred CCEEEEeccCC----ccCcceEECCCCCEEEEEeCC--------------------------------------------
Confidence 4332111 111 123456677776655444322
Q ss_pred CCeEEEEcCCCc---eeeeeccccccCeEEEEECCCCCEEEEEEe----------cCeEEEEECCCccceeccccccc--
Q psy13076 241 DNTIAVFEGPPF---KFKMTKQEHSRFVQAVRYSPSGSHFASAGF----------DGKVFLYDGASADLVSELGNPAH-- 305 (423)
Q Consensus 241 d~~i~~~~~~~~---~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~-- 305 (423)
.+.|..|+.... .... ...... ...++++++|.+.++... .+.|..+|. .++.+..+..+..
T Consensus 206 ~~~I~~~~~~~~~~~~~~~-~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~ 282 (322)
T 2fp8_A 206 SHQIVKYWLEGPKKGTAEV-LVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFA 282 (322)
T ss_dssp GTEEEEEESSSTTTTCEEE-EEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTT
T ss_pred CCeEEEEECCCCcCCccce-EEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCc
Confidence 223333322110 0000 000112 456788899886665544 467888875 4555544432210
Q ss_pred CCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076 306 KGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK 338 (423)
Q Consensus 306 ~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~ 338 (423)
...+.++++ .++++.++....+.|..+++..+
T Consensus 283 ~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 283 GEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp TSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred cccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 234566666 46777777777888999987643
No 249
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.62 E-value=4.1e-06 Score=79.86 Aligned_cols=223 Identities=16% Similarity=0.135 Sum_probs=136.7
Q ss_pred CCCCEEEEEcc-CCcEEEEEcCCCceeEEeeecCCCCCeeEEEE-C-CCCCeEEEEEcC----------------Cceee
Q psy13076 141 PSGFYIASGDI-SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAW-S-PDNQRMVVVGEG----------------RERFG 201 (423)
Q Consensus 141 p~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~-s-~~~~~~~~~~~~----------------~~~~~ 201 (423)
+||+++..... +..|.+.|+.+.+........ .......+++ + |+++++++.+.. .....
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCC-CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 47888877655 567999999887765433332 2344678888 5 999999887521 11234
Q ss_pred EEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCC--------------CeEEEEc-------------------
Q psy13076 202 HVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSED--------------NTIAVFE------------------- 248 (423)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d--------------~~i~~~~------------------- 248 (423)
.+.+.++.+....+.-.. ....++++|++.+.++++... ..+.+++
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 455555555555544322 346678899998866666443 2244443
Q ss_pred ----CCC--cee-eeeccccccCeEEEEECCCCCEEEEEE-ecCeEEEEECCCcc------------ceecccccccCCC
Q psy13076 249 ----GPP--FKF-KMTKQEHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASAD------------LVSELGNPAHKGG 308 (423)
Q Consensus 249 ----~~~--~~~-~~~~~~~~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~------------~~~~~~~~~~~~~ 308 (423)
... .+. .... ......-++.++|||+++++++ .+..|.++|..+.+ ...++. -..+
T Consensus 257 ~VID~~~~~~~~~~~~I-pvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~---vG~g 332 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYI-PIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE---LGLG 332 (595)
T ss_dssp EEEECSGGGCCSSEEEE-EEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB---CCSC
T ss_pred EEEeCcccCCceeEEEE-ecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC---CCCC
Confidence 222 000 0000 0111234689999999876666 57899999998653 122221 2346
Q ss_pred eEEEEECCCCCeEEEEeCCCcEEEEecCC----------cceeeeeeeCceeEee----EEEEEecCcEEEEEeC
Q psy13076 309 VYAVAWKPDGTQLLTASGDKTCKLWDIET----------KSAVSEFLMGNQVEDQ----QVSCLWQGDYLLTVSL 369 (423)
Q Consensus 309 i~~l~~~~~~~~l~s~s~d~~i~iwd~~~----------~~~i~~~~~~~~~~~~----~~~~~~~g~~l~~~~~ 369 (423)
...++|+|+|...++.-.|++|..||+.. .+.+.+...+.+.... .....++|++|++...
T Consensus 333 P~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 333 PLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred cceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 78999999996566777899999999977 4455555443321111 1233578999988753
No 250
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.57 E-value=1.9e-05 Score=68.11 Aligned_cols=197 Identities=10% Similarity=0.064 Sum_probs=125.6
Q ss_pred EEEEEECCCCCEEEEEcc--CCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcc
Q psy13076 134 VNVAKYSPSGFYIASGDI--SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTS 211 (423)
Q Consensus 134 i~~~~~sp~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (423)
...+.|+|++...++.+. ++.|++.|..+++.......... .....+++. ++.+.++.- ......+++.++.+.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~--g~~lyv~t~-~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-YFGEGLTLL--NEKLYQVVW-LKNIGFIYDRRTLSN 98 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-CCEEEEEEE--TTEEEEEET-TCSEEEEEETTTTEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-cceEEEEEe--CCEEEEEEe-cCCEEEEEECCCCcE
Confidence 578899998765555543 58999999999886654433221 122334443 556665543 344456777777776
Q ss_pred eecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecccc--c---cCeEEEEECCCCCEEEEEEecCeE
Q psy13076 212 VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH--S---RFVQAVRYSPSGSHFASAGFDGKV 286 (423)
Q Consensus 212 ~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~--~---~~i~~l~~s~~g~~l~s~s~dg~i 286 (423)
+..+... ......+.+++...+ .+..++.+.++|..+++........ . ..++.+.|. +|..++..-.++.|
T Consensus 99 ~~~i~~g--~~~g~glt~Dg~~l~-vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V 174 (266)
T 2iwa_A 99 IKNFTHQ--MKDGWGLATDGKILY-GSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCI 174 (266)
T ss_dssp EEEEECC--SSSCCEEEECSSSEE-EECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEE
T ss_pred EEEEECC--CCCeEEEEECCCEEE-EECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeE
Confidence 6666433 112344666776544 4557889999998776654443321 1 235677787 67555555467899
Q ss_pred EEEECCCccceeccccccc-----------CCCeEEEEECCCCCeE-EEEeCCCcEEEEecCCc
Q psy13076 287 FLYDGASADLVSELGNPAH-----------KGGVYAVAWKPDGTQL-LTASGDKTCKLWDIETK 338 (423)
Q Consensus 287 ~vwd~~~~~~~~~~~~~~~-----------~~~i~~l~~~~~~~~l-~s~s~d~~i~iwd~~~~ 338 (423)
.+.|..+++.+..+...+. .....+++|+|+++.| +++....++...++...
T Consensus 175 ~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 175 ARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 9999999998777653210 1346899999998654 55556778887776543
No 251
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.53 E-value=5.7e-05 Score=65.14 Aligned_cols=187 Identities=11% Similarity=0.003 Sum_probs=120.0
Q ss_pred eeeEEEEeCCEEEEEec--cceEEEEeccCCCCceeecc-cccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeec
Q psy13076 8 QQVSCLWQGDYLLTVSL--SGFISYLDVNNPSTPIRVIK-GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFAT 84 (423)
Q Consensus 8 ~~~~~~~~~~~~~~~~~--dg~i~~~d~~~~~~~~~~~~-gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~ 84 (423)
|-+++++||.+.++.+. ++.|+++|+.++ +.+..+. +...-...+++.. +++.++.-.++.+.++|.++.+++..
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg-~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~~ 101 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYGRSSVRQVALQTG-KVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIKN 101 (266)
T ss_dssp EEEEECSTTEEEEEECSTTTCEEEEEETTTC-CEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred ccEEEeCCCeEEEECCCCCCCEEEEEECCCC-CEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEEEE
Confidence 56777767655554443 589999999874 4444432 1111222455543 34556666789999999999988888
Q ss_pred ccCCCCCCceEEeeCCCCCeEEEe-cCCeEEEEecCCCcccccccCC-----cceEEEEEECCCCCEEEEEccCCcEEEE
Q psy13076 85 LPRTQRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEH-----SCAVNVAKYSPSGFYIASGDISGKVRIW 158 (423)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~h-----~~~i~~~~~sp~~~~l~s~~~d~~i~vw 158 (423)
++.. ......+. ++|+.++.+ .++.+.+.|.++.+......-- -..++.+.|. +|+..+....++.|.+-
T Consensus 102 i~~g-~~~g~glt--~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vI 177 (266)
T 2iwa_A 102 FTHQ-MKDGWGLA--TDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARI 177 (266)
T ss_dssp EECC-SSSCCEEE--ECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EECC-CCCeEEEE--ECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEE
Confidence 7644 22233333 355544444 4578888998887665554311 1235677777 77666666668899999
Q ss_pred EcCCCceeEEeeecC-----------CCCCeeEEEECCCCCeEEEEEcCCcee
Q psy13076 159 DTVNKEHILKNEFHP-----------IGGPIKDIAWSPDNQRMVVVGEGRERF 200 (423)
Q Consensus 159 d~~~~~~~~~~~~~~-----------~~~~v~~v~~s~~~~~~~~~~~~~~~~ 200 (423)
|..+++......+.. .......|+|+|+++.+++.+......
T Consensus 178 D~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v 230 (266)
T 2iwa_A 178 SAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKL 230 (266)
T ss_dssp ETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEE
T ss_pred ECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeE
Confidence 999887665544421 113457899999999998887665543
No 252
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.51 E-value=3.2e-05 Score=76.79 Aligned_cols=257 Identities=12% Similarity=0.155 Sum_probs=142.8
Q ss_pred CCEEEEEccCCcEEEEEcCCCceeEEeeecCCC--CCeeEEEECC--CCCeEEEEEcC----CceeeEEEeecCCcceec
Q psy13076 143 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIG--GPIKDIAWSP--DNQRMVVVGEG----RERFGHVFMSETGTSVGE 214 (423)
Q Consensus 143 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~v~~v~~s~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 214 (423)
+..++.++.|+.|..+|.++++.++........ ..+. .+| .+..+++.... .......++..+++.+..
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~---~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSIT---GAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCC---SCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceec---CCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 456777888999999999999887765542110 0111 011 12233332221 122344455556665543
Q ss_pred ccCC---C----------------------------cceeEEEEecCCCeeEEEEeCCC-------------------eE
Q psy13076 215 ISGQ---S----------------------------KPINSCDFKPSRPFRIITGSEDN-------------------TI 244 (423)
Q Consensus 215 ~~~~---~----------------------------~~i~~~~~~~~~~~~~~s~s~d~-------------------~i 244 (423)
.... . ..-...++.|.... ++.++.++ .|
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~-vy~~~~~g~~w~~~~~~~~~gd~l~~~~v 272 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDL-LYVGTGNGSPWNREVRSPGGGDNLYLSSI 272 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTE-EEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCE-EEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 3210 0 01123567776654 55555554 38
Q ss_pred EEEcCCCceeeeeccc--cc-------cCeEEEEECCCCC---EEEEEEecCeEEEEECCCccceecccccc--------
Q psy13076 245 AVFEGPPFKFKMTKQE--HS-------RFVQAVRYSPSGS---HFASAGFDGKVFLYDGASADLVSELGNPA-------- 304 (423)
Q Consensus 245 ~~~~~~~~~~~~~~~~--~~-------~~i~~l~~s~~g~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-------- 304 (423)
..+|..+.+.....+. |. .......+..+|+ .++.++.+|.++++|..+++.+.......
T Consensus 273 ~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d 352 (668)
T 1kv9_A 273 LAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVD 352 (668)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEEC
T ss_pred EEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccc
Confidence 8888777776655443 21 1222223334665 68889999999999999998763321100
Q ss_pred -cCCC-------------------------eEEEEECCCCCeEEEE----------------------------------
Q psy13076 305 -HKGG-------------------------VYAVAWKPDGTQLLTA---------------------------------- 324 (423)
Q Consensus 305 -~~~~-------------------------i~~l~~~~~~~~l~s~---------------------------------- 324 (423)
..+. -..++++|+...+...
T Consensus 353 ~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p 432 (668)
T 1kv9_A 353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP 432 (668)
T ss_dssp TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred cccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence 0000 0126777766555431
Q ss_pred --eCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCc-eeEEEec
Q psy13076 325 --SGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKP-ITALALS 401 (423)
Q Consensus 325 --s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~-v~~i~~s 401 (423)
..++.|..||..+++.+-+......... ......|..+..++.++.++.||..+++. +..++..... -.-+.+.
T Consensus 433 ~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~--~~~~t~gg~vf~g~~dg~l~a~d~~tG~~-l~~~~~~~~~~~~p~~~~ 509 (668)
T 1kv9_A 433 AAVVSGALLAWDPVKQKAAWKVPYPTHWNG--GTLSTAGNLVFQGTAAGQMHAYSADKGEA-LWQFEAQSGIVAAPMTFE 509 (668)
T ss_dssp GGGCEEEEEEEETTTTEEEEEEEESSSCCC--CEEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEE
T ss_pred CCCccceEEEEeCCCCcEEEEccCCCCCcC--ceeEeCCCEEEEECCcccchhhhhhcChh-heEecCCCCcccCceEEE
Confidence 1347899999999987655543332211 12334788888899999999999988654 3333322211 1223445
Q ss_pred CCCCe
Q psy13076 402 PDRGT 406 (423)
Q Consensus 402 p~~~~ 406 (423)
.+++.
T Consensus 510 ~~G~~ 514 (668)
T 1kv9_A 510 LAGRQ 514 (668)
T ss_dssp ETTEE
T ss_pred ECCEE
Confidence 56764
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.49 E-value=5.2e-05 Score=64.73 Aligned_cols=185 Identities=15% Similarity=0.147 Sum_probs=120.1
Q ss_pred eeeEEEEeCCEEEEEeccc--eEEEEeccCCCCceeecccccCceeEEEEeCCC-CeEEEecCCCceEEeecCCcceeec
Q psy13076 8 QQVSCLWQGDYLLTVSLSG--FISYLDVNNPSTPIRVIKGHNKPITALALSPDR-GTVFTGSHDGFITRWNAKTEYIFAT 84 (423)
Q Consensus 8 ~~~~~~~~~~~~~~~~~dg--~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~-~~l~sg~~D~~i~vW~~~~~~~~~~ 84 (423)
|-+.++ |+.+..+.+.+| .|+.+|+.++ +....+.-. .........+++ ++.+..-.++.+.++|.++.+++.+
T Consensus 46 qGL~~~-~~~LyestG~~g~S~v~~vD~~Tg-kv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 46 EGFFYR-NGYFYESTGLNGRSSIRKVDIESG-KTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEECTTTC-CEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred ceEEEE-CCEEEEECCCCCCceEEEEECCCC-cEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence 445555 677777777766 9999999874 444444322 233332222333 4445556789999999999999888
Q ss_pred ccCCCCCCceEEeeCCCCCeEEEec-CCeEEEEecCCCcccccccC----Cc-ceEEEEEECCCCCEEEEEccCCcEEEE
Q psy13076 85 LPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTE----HS-CAVNVAKYSPSGFYIASGDISGKVRIW 158 (423)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~----h~-~~i~~~~~sp~~~~l~s~~~d~~i~vw 158 (423)
+.....+..+ .++++.++.++ .+.+.+.|.++.+......- .. ..++.+.|. +|+..+..-.+..|.+.
T Consensus 123 i~~~~eG~gl----t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vI 197 (262)
T 3nol_A 123 FNYDGEGWGL----THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRI 197 (262)
T ss_dssp EECSSCCCCE----EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EECCCCceEE----ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEE
Confidence 8765443322 24566555555 56788888888766655432 11 334556675 77766666678899999
Q ss_pred EcCCCceeEEeeecCC----------CCCeeEEEECCCCCeEEEEEcCCcee
Q psy13076 159 DTVNKEHILKNEFHPI----------GGPIKDIAWSPDNQRMVVVGEGRERF 200 (423)
Q Consensus 159 d~~~~~~~~~~~~~~~----------~~~v~~v~~s~~~~~~~~~~~~~~~~ 200 (423)
|.++++......+... ....+.|||+|+++.|++.+......
T Consensus 198 Dp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~ 249 (262)
T 3nol_A 198 DPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKV 249 (262)
T ss_dssp CTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEE
T ss_pred ECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCce
Confidence 9998887655544311 23457899999999999988765543
No 254
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.48 E-value=0.0011 Score=64.56 Aligned_cols=162 Identities=14% Similarity=0.126 Sum_probs=97.6
Q ss_pred CeEEEEcCCCceeeeeccc--cc--------cCeEEEEEC-CCCC---EEEEEEecCeEEEEECCCccceeccccccc--
Q psy13076 242 NTIAVFEGPPFKFKMTKQE--HS--------RFVQAVRYS-PSGS---HFASAGFDGKVFLYDGASADLVSELGNPAH-- 305 (423)
Q Consensus 242 ~~i~~~~~~~~~~~~~~~~--~~--------~~i~~l~~s-~~g~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-- 305 (423)
+.|..+|..+.+.....+. |. .++ -+... .+|+ .++.++.+|.++++|..+++.+........
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~-l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELV-LFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCE-EEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcE-EEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 5788888877776665432 21 112 12222 5674 788899999999999999887654322100
Q ss_pred --------CCC---------------------------------eEEEEECCCCCeEEEEe-------------------
Q psy13076 306 --------KGG---------------------------------VYAVAWKPDGTQLLTAS------------------- 325 (423)
Q Consensus 306 --------~~~---------------------------------i~~l~~~~~~~~l~s~s------------------- 325 (423)
.+. -..++++|+...+....
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 000 01356777655554432
Q ss_pred --------------CCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccC
Q psy13076 326 --------------GDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGH 391 (423)
Q Consensus 326 --------------~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h 391 (423)
.++.|.-||+.+++.+-+.....+.... .+...|..+..++.++.++.+|..+++. +..++..
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g--~~~tagglvf~g~~dg~l~A~D~~tG~~-lW~~~~~ 526 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAG--VLATAGNLVFTGTGDGYFKAFDAKSGKE-LWKFQTG 526 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSC--CEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECS
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCccc--ceEeCCCEEEEECCCCcEEEEECCCCCE-EEEecCC
Confidence 2578999999999876555433222111 1223567777899999999999988654 3333322
Q ss_pred CCcee--EEEecCCCCeEE
Q psy13076 392 NKPIT--ALALSPDRGTVF 408 (423)
Q Consensus 392 ~~~v~--~i~~sp~~~~l~ 408 (423)
..+. -+.+..+++.++
T Consensus 527 -~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 527 -SGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp -SCCCSCCEEEEETTEEEE
T ss_pred -CCcccCceEEEECCEEEE
Confidence 2222 266667887543
No 255
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.46 E-value=0.00053 Score=66.65 Aligned_cols=163 Identities=12% Similarity=0.058 Sum_probs=97.1
Q ss_pred eEEEEcCCCceeeeecccc--c-------cCeEEEEECCCCC---EEEEEEecCeEEEEECCCccceecccccc-c----
Q psy13076 243 TIAVFEGPPFKFKMTKQEH--S-------RFVQAVRYSPSGS---HFASAGFDGKVFLYDGASADLVSELGNPA-H---- 305 (423)
Q Consensus 243 ~i~~~~~~~~~~~~~~~~~--~-------~~i~~l~~s~~g~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~---- 305 (423)
.+..+|..+.+.....+.. . .....+...++|+ .++.++.+|.+.++|..+++.+....... .
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 5888887766665544321 1 1111123335774 57778899999999999998765543211 0
Q ss_pred -----C-CCe--------------------------EEEEECCCCCeEEEEe----------------------------
Q psy13076 306 -----K-GGV--------------------------YAVAWKPDGTQLLTAS---------------------------- 325 (423)
Q Consensus 306 -----~-~~i--------------------------~~l~~~~~~~~l~s~s---------------------------- 325 (423)
. ..+ ..++++|+..+|....
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 432 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence 0 000 2357888777666553
Q ss_pred ---------CCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEec-cCCCce
Q psy13076 326 ---------GDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIK-GHNKPI 395 (423)
Q Consensus 326 ---------~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~h~~~v 395 (423)
.++.|..||..+++.+-++........ ......+..+..++.++.++.+|..+.+. +..+. ++...-
T Consensus 433 ~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~--~~~~t~gg~v~~g~~dg~l~a~D~~tG~~-lw~~~~~~~~~~ 509 (571)
T 2ad6_A 433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWG--GTLYTKGGLVWYATLDGYLKALDNKDGKE-LWNFKMPSGGIG 509 (571)
T ss_dssp ECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCS--BCEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSSCCCS
T ss_pred cCccccCCCCCCeEEEEECCCCCEEEEecCCCCccc--eeEEECCCEEEEEcCCCeEEEEECCCCCE-EEEEeCCCCcEe
Confidence 357899999999987766544322111 11223567777789999999999988654 33333 221112
Q ss_pred eEEEecCCCCeEE
Q psy13076 396 TALALSPDRGTVF 408 (423)
Q Consensus 396 ~~i~~sp~~~~l~ 408 (423)
.-+.+.++++.++
T Consensus 510 ~p~~~~~~G~~yv 522 (571)
T 2ad6_A 510 SPMTYSFKGKQYI 522 (571)
T ss_dssp CCEEEEETTEEEE
T ss_pred eeEEEEECCEEEE
Confidence 2244567887554
No 256
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.44 E-value=3.2e-05 Score=66.00 Aligned_cols=185 Identities=12% Similarity=0.157 Sum_probs=118.5
Q ss_pred EEEEEECCCCCEEEEEccCC--cEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcc
Q psy13076 134 VNVAKYSPSGFYIASGDISG--KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTS 211 (423)
Q Consensus 134 i~~~~~sp~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (423)
...+.|+ ++....+.+.+| .|+++|.++++......+. .........+++..+..+. -++....+++.++.+.
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~---~~~FgeGit~~g~~ly~lt-w~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG---KRYFGEGISDWKDKIVGLT-WKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC---TTCCEEEEEEETTEEEEEE-SSSSEEEEEETTTCCE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC---CccceeEEEEeCCEEEEEE-eeCCEEEEEECccCcE
Confidence 4678888 676667777765 8999999998876554433 2232323333455555553 3444567778777777
Q ss_pred eecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecccc----c-cCeEEEEECCCCCEEEEEEecCeE
Q psy13076 212 VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH----S-RFVQAVRYSPSGSHFASAGFDGKV 286 (423)
Q Consensus 212 ~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~----~-~~i~~l~~s~~g~~l~s~s~dg~i 286 (423)
+.++.... ....+.+++.. ++.+..++.|.++|..+++........ . ..++.+.+. +|+..+..-.++.|
T Consensus 120 ~~ti~~~~---eG~glt~dg~~-L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I 194 (262)
T 3nol_A 120 VRSFNYDG---EGWGLTHNDQY-LIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKI 194 (262)
T ss_dssp EEEEECSS---CCCCEEECSSC-EEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEE
T ss_pred EEEEECCC---CceEEecCCCE-EEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeE
Confidence 77665432 22334455654 444555788999998777655443321 1 335567776 67655444468899
Q ss_pred EEEECCCccceeccccccc----------CCCeEEEEECCCCCeEEEEeCCC
Q psy13076 287 FLYDGASADLVSELGNPAH----------KGGVYAVAWKPDGTQLLTASGDK 328 (423)
Q Consensus 287 ~vwd~~~~~~~~~~~~~~~----------~~~i~~l~~~~~~~~l~s~s~d~ 328 (423)
.+.|.++++.+..+...+- .....++||+|+++.|+..++..
T Consensus 195 ~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W 246 (262)
T 3nol_A 195 VRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW 246 (262)
T ss_dssp EEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC
T ss_pred EEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC
Confidence 9999999998776643211 13468999999988888777654
No 257
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.41 E-value=0.00085 Score=65.33 Aligned_cols=163 Identities=15% Similarity=0.098 Sum_probs=94.5
Q ss_pred CeEEEEcCCCceeeeecccccc---------CeEEEEEC-CCC---CEEEEEEecCeEEEEECCCccceecccccc----
Q psy13076 242 NTIAVFEGPPFKFKMTKQEHSR---------FVQAVRYS-PSG---SHFASAGFDGKVFLYDGASADLVSELGNPA---- 304 (423)
Q Consensus 242 ~~i~~~~~~~~~~~~~~~~~~~---------~i~~l~~s-~~g---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---- 304 (423)
+.|..+|..+.+.....+.... ...-+... .+| +.++.++.+|.++++|..+++.+.......
T Consensus 278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 357 (599)
T 1w6s_A 278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNV 357 (599)
T ss_dssp SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred ceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccc
Confidence 3788888777666555433211 11112232 567 467778899999999999998765443110
Q ss_pred ------cCCC-e--------------------------EEEEECCCCCeEEEEe--------------------------
Q psy13076 305 ------HKGG-V--------------------------YAVAWKPDGTQLLTAS-------------------------- 325 (423)
Q Consensus 305 ------~~~~-i--------------------------~~l~~~~~~~~l~s~s-------------------------- 325 (423)
..+. + ..++++|+..++.+..
T Consensus 358 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 437 (599)
T 1w6s_A 358 FKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLN 437 (599)
T ss_dssp EEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred ccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccce
Confidence 0000 0 1356777665554421
Q ss_pred -------------CCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCC
Q psy13076 326 -------------GDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHN 392 (423)
Q Consensus 326 -------------~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~ 392 (423)
.++.+.-||+.+++.+-+.....+.... .+...|..+..++.++.++.+|..+++. +...+-..
T Consensus 438 ~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g--~~~tagg~vf~gt~dg~l~A~D~~tG~~-lW~~~l~~ 514 (599)
T 1w6s_A 438 MYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGG--TMATAGDLVFYGTLDGYLKARDSDTGDL-LWKFKIPS 514 (599)
T ss_dssp EEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSB--CEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSS
T ss_pred eccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCc--ceEecCCEEEEECCCCeEEEEECCCCCE-EEEeeCCC
Confidence 3478999999998876555333221111 1223677777799999999999998754 33333211
Q ss_pred -CceeEEEecCCCCeE
Q psy13076 393 -KPITALALSPDRGTV 407 (423)
Q Consensus 393 -~~v~~i~~sp~~~~l 407 (423)
....-+.+..+++.+
T Consensus 515 g~~~~P~~y~~~G~qy 530 (599)
T 1w6s_A 515 GAIGYPMTYTHKGTQY 530 (599)
T ss_dssp CCCSCCEEEEETTEEE
T ss_pred CcEeccEEEEeCCEEE
Confidence 112235556677743
No 258
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.40 E-value=0.00015 Score=72.05 Aligned_cols=114 Identities=12% Similarity=0.098 Sum_probs=69.2
Q ss_pred eeeEEEE-eCCEEEEEeccc-----------eEEEEeccCCCC-ceeecc-cccCceeEEEEeCCCCeEEEec-CCCceE
Q psy13076 8 QQVSCLW-QGDYLLTVSLSG-----------FISYLDVNNPST-PIRVIK-GHNKPITALALSPDRGTVFTGS-HDGFIT 72 (423)
Q Consensus 8 ~~~~~~~-~~~~~~~~~~dg-----------~i~~~d~~~~~~-~~~~~~-gh~~~V~~l~~~~~~~~l~sg~-~D~~i~ 72 (423)
...++.+ +|+.++.|+.+. .+.+||+.+..- .+..+. .+..-..++++..++++++.|+ .+..+.
T Consensus 189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 3566666 888888887543 688999875432 222222 2333344678888999999998 456899
Q ss_pred EeecCCcceeec--ccCCCCCCceEEeeCCCCCeEEEecC-------CeEEEEecCCCcc
Q psy13076 73 RWNAKTEYIFAT--LPRTQRGQPIVLGGDPKGKNFLYTNG-------NSVIIRNIENPAI 123 (423)
Q Consensus 73 vW~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~ 123 (423)
+||..+..-... ++. .+.. ..+...++|+.+++... +.+.++|+++...
T Consensus 269 ~yd~~t~~W~~~~~~~~-~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQV-ARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp EEEGGGTEEEECCCCSS-CCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred EecCcCCceeECCCCCc-cccc-cceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 999887643221 111 1111 12233457777776541 4678888876543
No 259
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.40 E-value=0.0001 Score=62.95 Aligned_cols=176 Identities=15% Similarity=0.135 Sum_probs=117.2
Q ss_pred eCCEEEEEeccceEEEEeccCCCCceeecccccCceeE--EEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCC
Q psy13076 15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITA--LALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQ 92 (423)
Q Consensus 15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~--l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~ 92 (423)
++.+..+.+.+|.|+++|+.++.- +..+.. ..... +++.. +++.+....++.+.++|.++.+++.++.....+.
T Consensus 64 ~~~Ly~stG~~g~v~~iD~~Tgkv-~~~~l~--~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGw 139 (268)
T 3nok_A 64 QGHFFESTGHQGTLRQLSLESAQP-VWMERL--GNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGW 139 (268)
T ss_dssp TTEEEEEETTTTEEEECCSSCSSC-SEEEEC--TTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSSCCC
T ss_pred CCEEEEEcCCCCEEEEEECCCCcE-EeEECC--CCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCCcee
Confidence 466677777888999999987443 333321 23333 45433 3555566689999999999999988887654432
Q ss_pred ceEEeeCCCCCeEEEec-CCeEEEEecCCCcccccccC--Cc---ceEEEEEECCCCCEEEEEccCCcEEEEEcCCCcee
Q psy13076 93 PIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTE--HS---CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 166 (423)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~--h~---~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~ 166 (423)
.+. ++++.++.++ .+.+.+.|.++.+......- +. ..++.+.|. +|+..+..-.+..|.+-|.++++..
T Consensus 140 GLt----~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~ 214 (268)
T 3nok_A 140 GLC----YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVV 214 (268)
T ss_dssp CEE----EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEE
T ss_pred EEe----cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEE
Confidence 222 4566655555 67888889888776655432 21 234566666 7776666666889999999988766
Q ss_pred EEeeecC-----------CCCCeeEEEECCCCCeEEEEEcCCce
Q psy13076 167 LKNEFHP-----------IGGPIKDIAWSPDNQRMVVVGEGRER 199 (423)
Q Consensus 167 ~~~~~~~-----------~~~~v~~v~~s~~~~~~~~~~~~~~~ 199 (423)
....+.. .....+.||++|+++.|++.+.....
T Consensus 215 ~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~ 258 (268)
T 3nok_A 215 GVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPR 258 (268)
T ss_dssp EEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSE
T ss_pred EEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCc
Confidence 5544431 12345789999999998888765543
No 260
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.34 E-value=0.00022 Score=63.93 Aligned_cols=181 Identities=9% Similarity=-0.037 Sum_probs=104.6
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccCCCCceeeccc--------------------ccCceeEEEEeC-CCCeEEEecC
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKG--------------------HNKPITALALSP-DRGTVFTGSH 67 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~g--------------------h~~~V~~l~~~~-~~~~l~sg~~ 67 (423)
-++++++|+++.++..++.|..||..... +..+.. ....+..+++.+ ++.++++. .
T Consensus 23 ~i~~d~~g~~l~v~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d-~ 99 (322)
T 2fp8_A 23 SFTFDSTNKGFYTSVQDGRVIKYEGPNSG--FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD-C 99 (322)
T ss_dssp CEECCTTCSSEEEECTTSEEEEECCTTTC--EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE-T
T ss_pred EEEEcCCCCEEEEEcCCCeEEEECCCCCc--eEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE-C
Confidence 35666678877788899999999876422 222210 123568899998 66555543 3
Q ss_pred CCceEEeecCCcce--eecccC-CCCCCceEEeeCC-CCCeEEEecC------------------CeEEEEecCCCcccc
Q psy13076 68 DGFITRWNAKTEYI--FATLPR-TQRGQPIVLGGDP-KGKNFLYTNG------------------NSVIIRNIENPAISD 125 (423)
Q Consensus 68 D~~i~vW~~~~~~~--~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~------------------~~~~i~~~~~~~~~~ 125 (423)
.+.|..+|.+++.+ +..... .....+--+..++ +|..++...+ ..+..++.++++...
T Consensus 100 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 179 (322)
T 2fp8_A 100 YYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL 179 (322)
T ss_dssp TTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE
T ss_pred CCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE
Confidence 45588888876532 111100 0111233466778 8887776533 346666766554332
Q ss_pred cccCCcceEEEEEECCCCCEEEEE-ccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEE
Q psy13076 126 IYTEHSCAVNVAKYSPSGFYIASG-DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVG 194 (423)
Q Consensus 126 ~~~~h~~~i~~~~~sp~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~ 194 (423)
...+ ....+.++++|++++|..+ ...+.|.+++...........+....+ ...+++.++|...++..
T Consensus 180 ~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~ 247 (322)
T 2fp8_A 180 LLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSS 247 (322)
T ss_dssp EEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEE
T ss_pred eccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEec
Confidence 2211 1234568999999866555 556889999986421100001111223 67899999998655543
No 261
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.29 E-value=0.00018 Score=61.40 Aligned_cols=178 Identities=11% Similarity=0.148 Sum_probs=111.2
Q ss_pred eEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecccccc-CeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccc
Q psy13076 223 NSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSR-FVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG 301 (423)
Q Consensus 223 ~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~ 301 (423)
..+.|+. ..+..+.+.++.|+.+|..+.+..... .... +--.+++.. ++.....-.++.+.++|.++.+.+.++.
T Consensus 58 qGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~ 133 (268)
T 3nok_A 58 QGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTR 133 (268)
T ss_dssp EEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence 4566663 455677788889999998776655444 2121 122344432 2344444468899999999999988886
Q ss_pred ccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEe----eEEEEEecCcEEEEEeCCCcEEEEe
Q psy13076 302 NPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVED----QQVSCLWQGDYLLTVSLSGFISYLD 377 (423)
Q Consensus 302 ~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~----~~~~~~~~g~~l~~~~~~~~i~~~~ 377 (423)
... .-++++ ++++.|+.+..+++|.++|..+.+.+.+......... ..+.+ .+|...+....++.|.+.|
T Consensus 134 ~~~---eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~-~dG~lyanvw~s~~I~vID 207 (268)
T 3nok_A 134 YSG---EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC-ANGVIYANIWHSSDVLEID 207 (268)
T ss_dssp CSS---CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE-ETTEEEEEETTCSEEEEEC
T ss_pred CCC---ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE-eCCEEEEEECCCCeEEEEe
Confidence 432 224454 5677777766788999999999988777644321111 11222 2665555555678899999
Q ss_pred cCCCCCceEEecc-------------CCCceeEEEecCCCCeEEEec
Q psy13076 378 VNNPSTPIRVIKG-------------HNKPITALALSPDRGTVFTGS 411 (423)
Q Consensus 378 ~~~~~~~~~~~~~-------------h~~~v~~i~~sp~~~~l~s~s 411 (423)
.+++.. +..+.- -..-.+.||+.|+++.|...|
T Consensus 208 p~TG~V-~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 208 PATGTV-VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TTTCBE-EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCCcE-EEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 877543 222211 113578999999877665555
No 262
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.27 E-value=0.0017 Score=57.55 Aligned_cols=194 Identities=7% Similarity=0.010 Sum_probs=107.6
Q ss_pred eEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcce
Q psy13076 133 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSV 212 (423)
Q Consensus 133 ~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (423)
....++|+|+++++++-..++.|..||..... ..... .......+++.++++.+++...........++..+++..
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~~~~---~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIHAT---VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEEE---CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCCce-EEEEe---CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 45678999999877777678999999876532 21111 234678899999998544332222211222333344321
Q ss_pred eccc-CCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc--eeee--------eccccccCeEEEEECCCCCEEEEEE
Q psy13076 213 GEIS-GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF--KFKM--------TKQEHSRFVQAVRYSPSGSHFASAG 281 (423)
Q Consensus 213 ~~~~-~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~--~~~~--------~~~~~~~~i~~l~~s~~g~~l~s~s 281 (423)
.... ........++..+.+ ..+++...++.|+.++.... +... ...........+ +|++++|..+.
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d 185 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN 185 (306)
T ss_dssp EEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred EEEeCCCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence 1111 111222333333332 33444445788888885432 1110 000111234455 78887665544
Q ss_pred -ecCeEEEEECCC-ccce--ecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecC
Q psy13076 282 -FDGKVFLYDGAS-ADLV--SELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIE 336 (423)
Q Consensus 282 -~dg~i~vwd~~~-~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~ 336 (423)
..+.|..++... ++.. ..+. .......++++++|++.++....+.|.++|..
T Consensus 186 ~~~~~I~~~~~~~~g~~~~~~~~~---~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 186 TEKMLLLRIPVDSTDKPGEPEIFV---EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TTTTEEEEEEBCTTSCBCCCEEEE---ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred CCCCEEEEEEeCCCCCCCccEEEe---ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 567899999764 3211 1111 11235678899999888877777888888864
No 263
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.26 E-value=0.0024 Score=57.82 Aligned_cols=244 Identities=8% Similarity=-0.045 Sum_probs=135.8
Q ss_pred ceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEec--CCeEEEEecCCCccccc
Q psy13076 49 PITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDI 126 (423)
Q Consensus 49 ~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~ 126 (423)
..+|.+..++..++++- ...|+..++........+. ....+..+.+++..+.+.++. ...+..++++.......
T Consensus 35 ~~~C~~~~~~~~ll~~~--~~~I~~i~~~g~~~~~~~~--~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~ 110 (349)
T 3v64_C 35 RRSCKALGPEPVLLFAN--RIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV 110 (349)
T ss_dssp SSCEEESSSCCEEEEEC--BSCEEEECTTSCCEEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred CCcccccccCceeEeec--ccceEEEeCCCCeeEEeec--CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE
Confidence 44566666644344443 3458877877654332221 223466777887665555543 56777777776554443
Q ss_pred ccCCcceEEEEEECCCCCEE-EEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEe
Q psy13076 127 YTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFM 205 (423)
Q Consensus 127 ~~~h~~~i~~~~~sp~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~ 205 (423)
..........+++.+.+..| .+-...+.|.+.+........ ...........+++.|.+..+..+............
T Consensus 111 ~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~--l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~ 188 (349)
T 3v64_C 111 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV--LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 188 (349)
T ss_dssp ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE--EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence 33333345678888755444 455556789999876543211 111112346889999987777766544312222222
Q ss_pred ecCCcceecc-cCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecC
Q psy13076 206 SETGTSVGEI-SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDG 284 (423)
Q Consensus 206 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg 284 (423)
.+ +.....+ .......+.++++|.+..+.++-+..+.|..++...................+++ ..+..+++-...+
T Consensus 189 ~d-G~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~ 266 (349)
T 3v64_C 189 MD-GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTK 266 (349)
T ss_dssp TT-SCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTT
T ss_pred CC-CCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCC
Confidence 22 2222222 2334567899999877766666667788888875432211112222334566777 3444445544567
Q ss_pred eEEEEECCCccceecc
Q psy13076 285 KVFLYDGASADLVSEL 300 (423)
Q Consensus 285 ~i~vwd~~~~~~~~~~ 300 (423)
.|..++..+++....+
T Consensus 267 ~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 267 SINSANKFTGKNQEII 282 (349)
T ss_dssp EEEEEETTTCCSCEEE
T ss_pred eEEEEEccCCCccEEe
Confidence 7888876666655444
No 264
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.24 E-value=0.0021 Score=57.04 Aligned_cols=227 Identities=13% Similarity=0.034 Sum_probs=121.9
Q ss_pred CceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccc
Q psy13076 48 KPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIY 127 (423)
Q Consensus 48 ~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 127 (423)
.....++|++++.++++-...+.|..||.+.+.. . .+..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-~-------------------------------~~~~--------- 70 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-I-------------------------------HATV--------- 70 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-E-------------------------------EEEC---------
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE-E-------------------------------EEeC---------
Confidence 4566889999988888877788888887654211 0 1110
Q ss_pred cCCcceEEEEEECCCCCEEEEEccCC--cEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEe
Q psy13076 128 TEHSCAVNVAKYSPSGFYIASGDISG--KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFM 205 (423)
Q Consensus 128 ~~h~~~i~~~~~sp~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~ 205 (423)
......+++.|+|+++++..... .|..++..+++........ .......++..+++. +++....... ...++
T Consensus 71 ---~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~-~~~~~~g~~~~~~~~-~~v~d~~~g~-i~~~d 144 (306)
T 2p4o_A 71 ---EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP-DAIFLNGITPLSDTQ-YLTADSYRGA-IWLID 144 (306)
T ss_dssp ---SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT-TCSCEEEEEESSSSE-EEEEETTTTE-EEEEE
T ss_pred ---CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCC-CccccCcccccCCCc-EEEEECCCCe-EEEEe
Confidence 12467788899888655543322 3555665555432211111 112233445444443 3333222221 12222
Q ss_pred ecCCc-cee---------cccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC-cee--eeeccccccCeEEEEECC
Q psy13076 206 SETGT-SVG---------EISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP-FKF--KMTKQEHSRFVQAVRYSP 272 (423)
Q Consensus 206 ~~~~~-~~~---------~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~-~~~--~~~~~~~~~~i~~l~~s~ 272 (423)
...+. .+. .........+.+ +|++.++.++-...+.|..|+... .+. ..... .......+++++
T Consensus 145 ~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~ 221 (306)
T 2p4o_A 145 VVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDV 221 (306)
T ss_dssp TTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBT
T ss_pred CCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECC
Confidence 22111 110 011112234445 777777667777788999998543 111 00110 112345688999
Q ss_pred CCCEEEEEEecCeEEEEECCCcccee--cccccccCCCeEEEEEC---CCCCeEEEEeCC
Q psy13076 273 SGSHFASAGFDGKVFLYDGASADLVS--ELGNPAHKGGVYAVAWK---PDGTQLLTASGD 327 (423)
Q Consensus 273 ~g~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~i~~l~~~---~~~~~l~s~s~d 327 (423)
+|+++++-...+.|.+++.. ++... .+. .......+++|. |+++.|..+...
T Consensus 222 dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~--~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 222 EGNLYGATHIYNSVVRIAPD-RSTTIIAQAE--QGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp TCCEEEECBTTCCEEEECTT-CCEEEEECGG--GTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCCEEEEeCCCCeEEEECCC-CCEEEEeecc--cccCCceEEEEecccCCCCEEEEECCC
Confidence 99877766667899999964 54422 222 123457899998 887776665543
No 265
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.23 E-value=0.0016 Score=59.89 Aligned_cols=245 Identities=7% Similarity=-0.074 Sum_probs=136.2
Q ss_pred ceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEec--CCeEEEEecCCCccccc
Q psy13076 49 PITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDI 126 (423)
Q Consensus 49 ~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~ 126 (423)
.-.|.+..++ .+|+.+ ....|+..++.......... ....+..+.+++..+.++++. ...+..++++.......
T Consensus 78 ~~~C~~~~~~-~~l~~~-~~~~I~~i~~~~~~~~~~~~--~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~ 153 (386)
T 3v65_B 78 RRSCKALGPE-PVLLFA-NRIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV 153 (386)
T ss_dssp SSCEEECSSC-CEEEEE-CBSCEEEECTTSCCCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE
T ss_pred CCeECCcccc-ceeEee-cCccceeeccCCCcEEEEec--CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE
Confidence 3445555553 333333 33578888887654332221 223466677887665555543 56777777776554443
Q ss_pred ccCCcceEEEEEECCCCCEE-EEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEe
Q psy13076 127 YTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFM 205 (423)
Q Consensus 127 ~~~h~~~i~~~~~sp~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~ 205 (423)
+.........+++.+.+..| .+-...+.|.+.+........ ...........+++.|.+..+..+............
T Consensus 154 ~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~--l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~ 231 (386)
T 3v65_B 154 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV--LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 231 (386)
T ss_dssp ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE--EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE--eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence 33333345678888755544 444556788888875433211 111112346889999988877766544312222222
Q ss_pred ecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCe
Q psy13076 206 SETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGK 285 (423)
Q Consensus 206 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~ 285 (423)
.+.......+.......+.++++|.+..+.++-+..+.|..++...................+++ ..+.++++-...+.
T Consensus 232 ~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~ 310 (386)
T 3v65_B 232 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKS 310 (386)
T ss_dssp TTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTE
T ss_pred CCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCe
Confidence 22222212222334457889999877766666677788998875432222122222334566777 34445555556778
Q ss_pred EEEEECCCccceecc
Q psy13076 286 VFLYDGASADLVSEL 300 (423)
Q Consensus 286 i~vwd~~~~~~~~~~ 300 (423)
|..++..+++....+
T Consensus 311 V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 311 INSANKFTGKNQEII 325 (386)
T ss_dssp EEEEETTTCCSCEEE
T ss_pred EEEEECCCCcceEEE
Confidence 888886666655544
No 266
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.22 E-value=0.00025 Score=71.49 Aligned_cols=199 Identities=11% Similarity=0.106 Sum_probs=106.0
Q ss_pred cccC-ceeEEEEe-CCCCeEEEe-----cCCCceEEeecCCc-ceeecccCCCCCCceEEeeCCCCCeEEEecC------
Q psy13076 45 GHNK-PITALALS-PDRGTVFTG-----SHDGFITRWNAKTE-YIFATLPRTQRGQPIVLGGDPKGKNFLYTNG------ 110 (423)
Q Consensus 45 gh~~-~V~~l~~~-~~~~~l~sg-----~~D~~i~vW~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 110 (423)
+|.- .+...+|| |||++|+-+ +...+|+++|++++ +.+.. ........+.++|+|+.+++...
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~---~~~~~~~~~~WspDg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD---KVSGTNGEIVWGPDHTSLFYVTKDETLRE 246 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC---CEEEECSCCEECSSTTEEEEEEECTTCCE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc---cccCceeeEEEecCCCEEEEEEECCCCCC
Confidence 4443 67889999 999987633 22336999999988 53211 00111123568899987777532
Q ss_pred CeEEEEecCCCcccc--ccc-CCcceEEEEEECCCCCEEEEEcc---CCcEEEEEcCCCceeE--EeeecCCCCCeeEEE
Q psy13076 111 NSVIIRNIENPAISD--IYT-EHSCAVNVAKYSPSGFYIASGDI---SGKVRIWDTVNKEHIL--KNEFHPIGGPIKDIA 182 (423)
Q Consensus 111 ~~~~i~~~~~~~~~~--~~~-~h~~~i~~~~~sp~~~~l~s~~~---d~~i~vwd~~~~~~~~--~~~~~~~~~~v~~v~ 182 (423)
..+.++++.++.... ++. ....-...+.|+|||++|+..+. ...|.++|+.+..... ............++.
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~ 326 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQ 326 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEE
T ss_pred CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEe
Confidence 246667777664332 222 22234567899999998886553 3467778887642111 111111123334444
Q ss_pred ECCCCCeEEEEEcCC-ceeeEEEeecCC--cceec-ccCCCcceeEEEEecCCCeeEEEEeCCCeEEEE
Q psy13076 183 WSPDNQRMVVVGEGR-ERFGHVFMSETG--TSVGE-ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF 247 (423)
Q Consensus 183 ~s~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~-~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~ 247 (423)
|+. ++.++..+... .....++..+.. ..... +..+.....--.+.+.+..++++...++...++
T Consensus 327 ~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 327 MHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp EET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEE
T ss_pred eee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEE
Confidence 433 66666665443 112233333222 22233 333332222223444566667777777765444
No 267
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.20 E-value=0.00055 Score=57.88 Aligned_cols=186 Identities=13% Similarity=0.136 Sum_probs=116.0
Q ss_pred eEEEEEECCCCCEEEEEccC--CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCc
Q psy13076 133 AVNVAKYSPSGFYIASGDIS--GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGT 210 (423)
Q Consensus 133 ~i~~~~~sp~~~~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (423)
-...+.|++ +....+.+.+ ..|+.+|.++++......... ........+.+..+..+. -+.....+++.++.+
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~---~~fgeGi~~~~~~ly~lt-w~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP---PYFGAGIVAWRDRLIQLT-WRNHEGFVYDLATLT 96 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT---TCCEEEEEEETTEEEEEE-SSSSEEEEEETTTTE
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC---CcceeEEEEeCCEEEEEE-eeCCEEEEEECCcCc
Confidence 356788887 5555666664 489999999988765544432 222222233355555543 334456677777777
Q ss_pred ceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccc-----cCeEEEEECCCCCEEEEEEecCe
Q psy13076 211 SVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS-----RFVQAVRYSPSGSHFASAGFDGK 285 (423)
Q Consensus 211 ~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~-----~~i~~l~~s~~g~~l~s~s~dg~ 285 (423)
.+.++..... ...+.+++.. ++.+..++.|.++|..+++......... ..++.+.+. +|+.++..-.+..
T Consensus 97 ~~~ti~~~~~---Gwglt~dg~~-L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~ 171 (243)
T 3mbr_X 97 PRARFRYPGE---GWALTSDDSH-LYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSR 171 (243)
T ss_dssp EEEEEECSSC---CCEEEECSSC-EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTE
T ss_pred EEEEEeCCCC---ceEEeeCCCE-EEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCe
Confidence 7766654322 2334455554 4455568899999988776554433221 345566665 6665544445789
Q ss_pred EEEEECCCccceecccccc-----------cCCCeEEEEECCCCCeEEEEeCCC
Q psy13076 286 VFLYDGASADLVSELGNPA-----------HKGGVYAVAWKPDGTQLLTASGDK 328 (423)
Q Consensus 286 i~vwd~~~~~~~~~~~~~~-----------~~~~i~~l~~~~~~~~l~s~s~d~ 328 (423)
|.+.|.++++.+..+...+ -.....++|++|+++.|+..+.-.
T Consensus 172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~w 225 (243)
T 3mbr_X 172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRW 225 (243)
T ss_dssp EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTC
T ss_pred EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCC
Confidence 9999999999876654221 123568999999888777776653
No 268
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.20 E-value=0.0017 Score=55.55 Aligned_cols=204 Identities=9% Similarity=0.076 Sum_probs=121.4
Q ss_pred ccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecc-ccccCeEEEEECCCCCEEEEEEecCeEEEEECCC
Q psy13076 215 ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ-EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGAS 293 (423)
Q Consensus 215 ~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~-~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~ 293 (423)
+.+-...+..++++|++..+.++...++.|...+.. .+...... ......-.+++.+++.++++.-.++.+.+++...
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~ 100 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP 100 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 445555788999999877667777888899998876 34333321 1123456788889888777655677888888654
Q ss_pred ccc---eeccc----ccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCC---cceeeeeee-----Cc-eeEeeEEEE
Q psy13076 294 ADL---VSELG----NPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET---KSAVSEFLM-----GN-QVEDQQVSC 357 (423)
Q Consensus 294 ~~~---~~~~~----~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~---~~~i~~~~~-----~~-~~~~~~~~~ 357 (423)
... ..... ....+....+++|+|+++.|.++.......+|.+.. ...+.-... .. -.....+++
T Consensus 101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~ 180 (255)
T 3qqz_A 101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEF 180 (255)
T ss_dssp TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEE
T ss_pred CCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEE
Confidence 332 11111 113456689999999997777777665666666641 111111100 00 011234445
Q ss_pred Ee-cCcEEEEEeCCCcEEEEecCCCCCceEEec-cCC------CceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076 358 LW-QGDYLLTVSLSGFISYLDVNNPSTPIRVIK-GHN------KPITALALSPDRGTVFTGSHDGFITRWN 420 (423)
Q Consensus 358 ~~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~h~------~~v~~i~~sp~~~~l~s~s~D~~i~~W~ 420 (423)
.+ .|+.++....+..+..+|.+........+. +.. ..--.|+|.|+|+++++ ++-..++.+.
T Consensus 181 dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 181 NQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred cCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 54 455556666677888888764322222232 211 24578999999987666 5555555554
No 269
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.17 E-value=0.012 Score=61.95 Aligned_cols=141 Identities=14% Similarity=0.188 Sum_probs=85.4
Q ss_pred CCEEEEEE----------ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeee
Q psy13076 274 GSHFASAG----------FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSE 343 (423)
Q Consensus 274 g~~l~s~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~ 343 (423)
..+++.|+ ..|.|++|+...++ ++.+.....++.+++++-- +|+ |++|- .+++++|++...+.+.
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k-L~lv~~~~v~g~v~al~~~-~g~-Lla~i-g~~l~vy~l~~~~~L~- 918 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK-LQTVAEKEVKGAVYSMVEF-NGK-LLASI-NSTVRLYEWTTEKELR- 918 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTE-EEEEEEEEESSCEEEEEEE-TTE-EEEEE-TTEEEEEEECTTSCEE-
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCE-EEEEEEEEcCCcCEEEeee-CCE-EEEEc-CCEEEEEECCCCceEE-
Confidence 46888887 34789999886433 2222222346788887632 454 44443 4789999998765443
Q ss_pred eeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEec--cCCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076 344 FLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIK--GHNKPITALALSPDRGTVFTGSHDGFITRWN 420 (423)
Q Consensus 344 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~ 420 (423)
.....-...........|++++.|+....+.++..+..+..+..+. -+..+++++.|--++ .++.+..+|.+.+..
T Consensus 919 ~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~ 996 (1158)
T 3ei3_A 919 TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQ 996 (1158)
T ss_dssp EEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEE
T ss_pred EEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEe
Confidence 1100000011222334688999999888777766554444343333 356678899987554 666678888887764
No 270
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.16 E-value=0.0035 Score=55.87 Aligned_cols=235 Identities=8% Similarity=-0.081 Sum_probs=133.3
Q ss_pred EEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEE-EEccCCcEEEEEcCCC---ceeEEeeecCCCCCeeE
Q psy13076 105 FLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTVNK---EHILKNEFHPIGGPIKD 180 (423)
Q Consensus 105 ~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-s~~~d~~i~vwd~~~~---~~~~~~~~~~~~~~v~~ 180 (423)
++++.+..++..+++......+... ...+..+.|++.+..+. +-...+.|..++.... .... ............
T Consensus 4 ll~~~~~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~-~~~~~~~~~p~g 81 (316)
T 1ijq_A 4 LFFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD-TVISRDIQAPDG 81 (316)
T ss_dssp EEEECBSSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE-EEECSSCSCCCE
T ss_pred EEEECCCeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE-EEEeCCCCCcCE
Confidence 4556666777777776655444332 34567899998665554 4445688999987651 1111 111111134578
Q ss_pred EEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCC-CeEEEEcCCCceeeeecc
Q psy13076 181 IAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSED-NTIAVFEGPPFKFKMTKQ 259 (423)
Q Consensus 181 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d-~~i~~~~~~~~~~~~~~~ 259 (423)
+++.+.+..+..+....... .+...+.......+.........+++.|.+..++++.... +.|..++...........
T Consensus 82 lavd~~~~~ly~~d~~~~~I-~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~ 160 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTV-SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (316)
T ss_dssp EEEETTTTEEEEEETTTTEE-EEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred EEEeecCCeEEEEECCCCEE-EEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence 89988776666654443332 2333332221112222345678899998777655555443 678777643322211112
Q ss_pred ccccCeEEEEECCCCCEEEEEE-ecCeEEEEECCCccceecccc-cccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCC
Q psy13076 260 EHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASADLVSELGN-PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET 337 (423)
Q Consensus 260 ~~~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~ 337 (423)
........++++|+++.|..+. ..+.|..+|..... ...+.. ........++++. .+..+++-...+.|..+|..+
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~ 238 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLT 238 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCC
Confidence 2234578899999877665554 46789999976422 222211 1122346788885 466666767778899999877
Q ss_pred cceeeee
Q psy13076 338 KSAVSEF 344 (423)
Q Consensus 338 ~~~i~~~ 344 (423)
++.+..+
T Consensus 239 g~~~~~i 245 (316)
T 1ijq_A 239 GSDVNLL 245 (316)
T ss_dssp CCCCEEE
T ss_pred CcceEEE
Confidence 7655443
No 271
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.16 E-value=0.0037 Score=56.05 Aligned_cols=269 Identities=11% Similarity=0.077 Sum_probs=135.4
Q ss_pred ceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeec--CCCCCeeEEEECCCCCeEEEEEcCCceeeEEE-eecC
Q psy13076 132 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH--PIGGPIKDIAWSPDNQRMVVVGEGRERFGHVF-MSET 208 (423)
Q Consensus 132 ~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~-~~~~ 208 (423)
..+..+.|.+++..++.+ .++.| +.....++.-...... .....+.+|.|.+ + .+.+++... .++ ..+.
T Consensus 36 ~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g----~i~~S~Dg 107 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPP----IMLHTTDG 107 (327)
T ss_dssp SCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETT----EEEEESST
T ss_pred CcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCC----eEEEECCC
Confidence 368888998877777754 46654 2222222211111111 1134678899986 3 344444332 233 3333
Q ss_pred CcceecccC---CCcceeEEEEecCCCeeEEEEeCCCeEEE-Ec-CCCceeeeeccccccCeEEEEECCCCCEEEEEEec
Q psy13076 209 GTSVGEISG---QSKPINSCDFKPSRPFRIITGSEDNTIAV-FE-GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD 283 (423)
Q Consensus 209 ~~~~~~~~~---~~~~i~~~~~~~~~~~~~~s~s~d~~i~~-~~-~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~d 283 (423)
++....+.. ....+..+.+.+++. .++ ++.++.+.. .| ...++.. .......+..+++.|++.+++.+...
T Consensus 108 G~tW~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~g~v~~S~DgG~tW~~~--~~~~~~~~~~~~~~~~~~~~~~g~~G 183 (327)
T 2xbg_A 108 GQSWSQIPLDPKLPGSPRLIKALGNGS-AEM-ITNVGAIYRTKDSGKNWQAL--VQEAIGVMRNLNRSPSGEYVAVSSRG 183 (327)
T ss_dssp TSSCEECCCCTTCSSCEEEEEEEETTE-EEE-EETTCCEEEESSTTSSEEEE--ECSCCCCEEEEEECTTSCEEEEETTS
T ss_pred CCCceECccccCCCCCeEEEEEECCCC-EEE-EeCCccEEEEcCCCCCCEEe--ecCCCcceEEEEEcCCCcEEEEECCC
Confidence 554444332 223456666665543 233 344555533 33 2233322 22334567889999999888776544
Q ss_pred CeEEEEEC--CCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeC---ceeEeeEEEEE
Q psy13076 284 GKVFLYDG--ASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMG---NQVEDQQVSCL 358 (423)
Q Consensus 284 g~i~vwd~--~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~---~~~~~~~~~~~ 358 (423)
+..+..|. .+.+.+ .. .....+..+++.|+++.++ ++.++.+++.+...++.-...... .......+...
T Consensus 184 ~~~~S~d~gG~tW~~~---~~-~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~ 258 (327)
T 2xbg_A 184 SFYSTWEPGQTAWEPH---NR-TTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYR 258 (327)
T ss_dssp SEEEEECTTCSSCEEE---EC-CSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEES
T ss_pred cEEEEeCCCCCceeEC---CC-CCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEec
Confidence 44444442 232222 11 2345678899999887654 456788777642222211111111 00111222233
Q ss_pred ecCcEEEEEeCCCcEEEEecCCCCCceEEec---cCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076 359 WQGDYLLTVSLSGFISYLDVNNPSTPIRVIK---GHNKPITALALSPDRGTVFTGSHDGFITRWNA 421 (423)
Q Consensus 359 ~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~---~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~ 421 (423)
+++..+++ ..++.+++ ..+....-..+. .+...+.++.|.+++ .++.++.+|.|..++.
T Consensus 259 ~~~~~~~~-g~~g~i~~--S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 259 TPNEVWLA-GGAGALLC--SQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp SSSCEEEE-ESTTCEEE--ESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred CCCEEEEE-eCCCeEEE--eCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 34554444 44666633 222222212222 234578899998555 4666778898877653
No 272
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.16 E-value=0.0001 Score=73.16 Aligned_cols=274 Identities=12% Similarity=-0.024 Sum_probs=137.8
Q ss_pred EEEECC-CCCEEEEEccCC-----------cEEEEEcCCCceeEEeeecC-CCCCeeEEEECCCCCeEEEEEcCCceeeE
Q psy13076 136 VAKYSP-SGFYIASGDISG-----------KVRIWDTVNKEHILKNEFHP-IGGPIKDIAWSPDNQRMVVVGEGRERFGH 202 (423)
Q Consensus 136 ~~~~sp-~~~~l~s~~~d~-----------~i~vwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~~~~~~~~~~~~~~ 202 (423)
.+++.| ++++++.|+.+. .+.+||..+.+......... ......++++.++++.+++.+.... ...
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~-~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK-KTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTT-CEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCC-ceE
Confidence 445667 888888887543 58889987765322112211 1223445778888887666553332 345
Q ss_pred EEeecCCcceeccc-C-CCcceeEEEEecCCCeeEEEEe-CC-----CeEEEEcCCCceeeeecc----ccccCeEEEEE
Q psy13076 203 VFMSETGTSVGEIS-G-QSKPINSCDFKPSRPFRIITGS-ED-----NTIAVFEGPPFKFKMTKQ----EHSRFVQAVRY 270 (423)
Q Consensus 203 ~~~~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~~~~s~s-~d-----~~i~~~~~~~~~~~~~~~----~~~~~i~~l~~ 270 (423)
+++..+..- ..+. . ..+.-.++...+++.. ++.|+ .+ ..+.+||....+...... .....-....+
T Consensus 269 ~yd~~t~~W-~~~~~~~~~R~~~s~~~~~dg~i-yv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~ 346 (656)
T 1k3i_A 269 LYDSSSDSW-IPGPDMQVARGYQSSATMSDGRV-FTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY 346 (656)
T ss_dssp EEEGGGTEE-EECCCCSSCCSSCEEEECTTSCE-EEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred EecCcCCce-eECCCCCccccccceEEecCCeE-EEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccccee
Confidence 565544321 1111 1 1122234445556654 45555 33 467888865544322100 00000000123
Q ss_pred CCCCCEEEEEEecCe---------EEEEECCCccceeccccccc-------CCCeEEEEECC-CCCeEEEEeCCC-----
Q psy13076 271 SPSGSHFASAGFDGK---------VFLYDGASADLVSELGNPAH-------KGGVYAVAWKP-DGTQLLTASGDK----- 328 (423)
Q Consensus 271 s~~g~~l~s~s~dg~---------i~vwd~~~~~~~~~~~~~~~-------~~~i~~l~~~~-~~~~l~s~s~d~----- 328 (423)
..++..++.|+.+|. +..||..+..-......... ...-.++.|.. +++.++.|+.++
T Consensus 347 ~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~ 426 (656)
T 1k3i_A 347 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD 426 (656)
T ss_dssp TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCC
Confidence 355666666766654 56777765542221110000 11224455543 778888887543
Q ss_pred ------cEEEEecCCcceeeee--eeCceeEeeEEEEEecCcEEEEEeCC-----------CcEEEEecCCCCCc-eEEe
Q psy13076 329 ------TCKLWDIETKSAVSEF--LMGNQVEDQQVSCLWQGDYLLTVSLS-----------GFISYLDVNNPSTP-IRVI 388 (423)
Q Consensus 329 ------~i~iwd~~~~~~i~~~--~~~~~~~~~~~~~~~~g~~l~~~~~~-----------~~i~~~~~~~~~~~-~~~~ 388 (423)
.+.+||..+....... .+..........+.++|+.++.|+.+ ..+.+||..+..-. +..+
T Consensus 427 ~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~ 506 (656)
T 1k3i_A 427 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN 506 (656)
T ss_dssp CCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC
T ss_pred cCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCC
Confidence 6788888766543221 11111112223344588888888653 45788887653210 0001
Q ss_pred ccCCCceeEEEecCCCCeEEEecC
Q psy13076 389 KGHNKPITALALSPDRGTVFTGSH 412 (423)
Q Consensus 389 ~~h~~~v~~i~~sp~~~~l~s~s~ 412 (423)
......-....+.||+++++.||.
T Consensus 507 ~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 507 SIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp SSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCccccccHhhcCCCcEEEecCCC
Confidence 111111224456799999999985
No 273
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.16 E-value=0.0016 Score=54.94 Aligned_cols=177 Identities=10% Similarity=0.082 Sum_probs=111.8
Q ss_pred CCEEEEEeccc--eEEEEeccCCCCceeecccccCcee--EEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCC
Q psy13076 16 GDYLLTVSLSG--FISYLDVNNPSTPIRVIKGHNKPIT--ALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRG 91 (423)
Q Consensus 16 ~~~~~~~~~dg--~i~~~d~~~~~~~~~~~~gh~~~V~--~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~ 91 (423)
+.+..+.+.+| .|+.+|+.++ +....+.-.. ... .+++. .+++......++.+.++|.++.+++.++.....+
T Consensus 31 ~~LyestG~~g~S~v~~vD~~tg-kv~~~~~l~~-~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G 107 (243)
T 3mbr_X 31 GHLYESTGETGRSSVRKVDLETG-RILQRAEVPP-PYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG 107 (243)
T ss_dssp TEEEEEECCTTSCEEEEEETTTC-CEEEEEECCT-TCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC
T ss_pred CEEEEECCCCCCceEEEEECCCC-CEEEEEeCCC-CcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc
Confidence 44455555543 9999999874 4444433211 222 23433 2445556678999999999999998888765433
Q ss_pred CceEEeeCCCCCeEEEe-cCCeEEEEecCCCcccccccC--Cc---ceEEEEEECCCCCEEEEEccCCcEEEEEcCCCce
Q psy13076 92 QPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTE--HS---CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 165 (423)
Q Consensus 92 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~--h~---~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~ 165 (423)
- .+. ++++.++.+ .++.+.+.|.++.+......- +. ..++.+.+. +|+..+..-.+..|.+.|.++++.
T Consensus 108 w--glt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V 182 (243)
T 3mbr_X 108 W--ALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKV 182 (243)
T ss_dssp C--EEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBE
T ss_pred e--EEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCE
Confidence 2 222 345544444 456888899888776655432 11 234455554 677666665678999999998887
Q ss_pred eEEeeecC-----------CCCCeeEEEECCCCCeEEEEEcCCcee
Q psy13076 166 ILKNEFHP-----------IGGPIKDIAWSPDNQRMVVVGEGRERF 200 (423)
Q Consensus 166 ~~~~~~~~-----------~~~~v~~v~~s~~~~~~~~~~~~~~~~ 200 (423)
.....+.. .....+.||++|+++.|++.+.....+
T Consensus 183 ~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~ 228 (243)
T 3mbr_X 183 VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPML 228 (243)
T ss_dssp EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEE
T ss_pred EEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcE
Confidence 65544332 123457899999999999888665543
No 274
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.15 E-value=0.013 Score=61.66 Aligned_cols=306 Identities=11% Similarity=0.064 Sum_probs=149.2
Q ss_pred cCCeEEEEecCCCcccccc-cCCcceEEEEEECCC------CCEEEEEcc-CCcEEEEEcCCCceeEEeeecCCCCCeeE
Q psy13076 109 NGNSVIIRNIENPAISDIY-TEHSCAVNVAKYSPS------GFYIASGDI-SGKVRIWDTVNKEHILKNEFHPIGGPIKD 180 (423)
Q Consensus 109 ~~~~~~i~~~~~~~~~~~~-~~h~~~i~~~~~sp~------~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~v~~ 180 (423)
.++.+.+..++++.+.... ..-...|.++.+.|. +.++|.|.. |++++|+++.+.+.+....+.. .....+
T Consensus 530 ~g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~-~~~p~s 608 (1158)
T 3ei3_A 530 VGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG-EIIPRS 608 (1158)
T ss_dssp ETTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS-SCCEEE
T ss_pred ECCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC-CCCCcE
Confidence 4566666655544322211 112357999998863 479999986 9999999998755543333321 123344
Q ss_pred EEECC-CCCeEEEEEcCCceeeEE-EeecCCcce--ecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeee
Q psy13076 181 IAWSP-DNQRMVVVGEGRERFGHV-FMSETGTSV--GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM 256 (423)
Q Consensus 181 v~~s~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~ 256 (423)
+.+.. ++...+.++-.++..... ++..++... +...--..++.-..+...+...+.+++ ++...+|.... ++..
T Consensus 609 i~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~~-~l~~ 686 (1158)
T 3ei3_A 609 ILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACS-DRPTVIYSSNH-KLVF 686 (1158)
T ss_dssp EEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEES-SSCEEEEESSS-SEEE
T ss_pred EEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEEC-CCCEEEEEcCC-ceEE
Confidence 43321 233334455444433222 222222211 111111234544444433333333333 33333343221 2222
Q ss_pred eccccccCeEEEEECCCC--CEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCC-------
Q psy13076 257 TKQEHSRFVQAVRYSPSG--SHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD------- 327 (423)
Q Consensus 257 ~~~~~~~~i~~l~~s~~g--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d------- 327 (423)
........-....|+... .-++. ..++.++|..+..-+.......+ -...+..++++|+.+.++.+..+
T Consensus 687 s~l~~~~v~~~~~F~se~~~~g~v~-~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~ 764 (1158)
T 3ei3_A 687 SNVNLKEVNYMCPLNSDGYPDSLAL-ANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTS 764 (1158)
T ss_dssp EEBSSSCCCEEEEECCSSSTTEEEE-ECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSS
T ss_pred eccChHHhceEeccCcccCCCcEEE-EcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccc
Confidence 211111112334564322 22443 33566888776433222111111 23456778888876654433211
Q ss_pred ------------------------------------------CcEEEEecCCcceeeeeeeCceeEeeEEEEE-e---cC
Q psy13076 328 ------------------------------------------KTCKLWDIETKSAVSEFLMGNQVEDQQVSCL-W---QG 361 (423)
Q Consensus 328 ------------------------------------------~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~-~---~g 361 (423)
..|++.|..+.+.+..+.........++... . ..
T Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~ 844 (1158)
T 3ei3_A 765 GGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPN 844 (1158)
T ss_dssp SSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCC
T ss_pred cccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCC
Confidence 2367778777777666654443333333322 2 24
Q ss_pred cEEEEEe----------CCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076 362 DYLLTVS----------LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 422 (423)
Q Consensus 362 ~~l~~~~----------~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~ 422 (423)
.+++.|+ ..|.|+++++...+...-.-....++|++++=- +|++|+..| +.|++|+..
T Consensus 845 ~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~ig--~~l~vy~l~ 912 (1158)
T 3ei3_A 845 TYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASIN--STVRLYEWT 912 (1158)
T ss_dssp CEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEET--TEEEEEEEC
T ss_pred EEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEcC--CEEEEEECC
Confidence 6788776 346788888864221111122346788888744 455555444 678888763
No 275
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.09 E-value=0.0058 Score=56.14 Aligned_cols=234 Identities=7% Similarity=-0.098 Sum_probs=135.3
Q ss_pred eEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEE-EEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEE
Q psy13076 104 NFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIA 182 (423)
Q Consensus 104 ~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~ 182 (423)
.++++....++..+++.........+. ..+..++|++.+..|. +-...+.|..++........ ..... ......++
T Consensus 89 ~l~~~~~~~I~~i~~~~~~~~~~~~~~-~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-~~~~~-~~~p~gla 165 (386)
T 3v65_B 89 VLLFANRIDIRQVLPHRSEYTLLLNNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-VVSTG-LESPGGLA 165 (386)
T ss_dssp EEEEECBSCEEEECTTSCCCEEEECSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE-EECSS-CSCCCCEE
T ss_pred eeEeecCccceeeccCCCcEEEEecCC-CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE-EEeCC-CCCccEEE
Confidence 455566667777777665554444333 3467899998655554 44456889999886544221 11111 12346788
Q ss_pred ECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCC-CeEEEEcCCCceeeeecccc
Q psy13076 183 WSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSED-NTIAVFEGPPFKFKMTKQEH 261 (423)
Q Consensus 183 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d-~~i~~~~~~~~~~~~~~~~~ 261 (423)
+.+.+..+..+...... ..+...+.......+.........+++.|.+..+.++-... +.|..++.............
T Consensus 166 vd~~~g~lY~~d~~~~~-I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~ 244 (386)
T 3v65_B 166 VDWVHDKLYWTDSGTSR-IEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH 244 (386)
T ss_dssp EETTTTEEEEEETTTTE-EEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred EEeCCCeEEEEcCCCCe-EEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECC
Confidence 88877766665544332 12222222221122223345678899998877766665555 67887775432222222223
Q ss_pred ccCeEEEEECCCCCEEEEEE-ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcce
Q psy13076 262 SRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSA 340 (423)
Q Consensus 262 ~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 340 (423)
......++++|++..|..+. ..+.|..++...... ..+.. .......++++ ..+..+++-...+.|..+|..+++.
T Consensus 245 ~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~ 321 (386)
T 3v65_B 245 LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKN 321 (386)
T ss_dssp CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EEEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EEEEE-CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcc
Confidence 34568899998776655544 467899998754322 22211 12345678888 4556666767778888888666655
Q ss_pred eeee
Q psy13076 341 VSEF 344 (423)
Q Consensus 341 i~~~ 344 (423)
+..+
T Consensus 322 ~~~i 325 (386)
T 3v65_B 322 QEII 325 (386)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 4443
No 276
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.08 E-value=0.0031 Score=58.85 Aligned_cols=202 Identities=9% Similarity=0.057 Sum_probs=114.0
Q ss_pred eEEEEEECC-CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCc--eeeEEEeecCC
Q psy13076 133 AVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE--RFGHVFMSETG 209 (423)
Q Consensus 133 ~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~--~~~~~~~~~~~ 209 (423)
....++++| ++..|..++..+.|+.+|......... .........++|+++++.++++..... ....++....+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~---~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTV---YSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEE---ECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEE---ecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC
Confidence 456788998 466666666658899999876543221 112345688999999997777664322 11122222222
Q ss_pred cce--ecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCcee-eeeccccccCeEEEEECCCCCEE-EEEEecCe
Q psy13076 210 TSV--GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF-KMTKQEHSRFVQAVRYSPSGSHF-ASAGFDGK 285 (423)
Q Consensus 210 ~~~--~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~-~~~~~~~~~~i~~l~~s~~g~~l-~s~s~dg~ 285 (423)
... ..+. .......++++|....+.++-..++.|..++...... .............++|+|+|++| ++-...+.
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 111 1121 2234567888985444455655678899998654433 11111122346789999999955 44445778
Q ss_pred EEEEECCC--ccc--eecccc----c---------ccCCCeE-EEEEC--------CCCCeEEEEeCCCcEEEEecCCcc
Q psy13076 286 VFLYDGAS--ADL--VSELGN----P---------AHKGGVY-AVAWK--------PDGTQLLTASGDKTCKLWDIETKS 339 (423)
Q Consensus 286 i~vwd~~~--~~~--~~~~~~----~---------~~~~~i~-~l~~~--------~~~~~l~s~s~d~~i~iwd~~~~~ 339 (423)
|..++... ++. ...+.. . +.-.... .++.. ++|.+.++-...+.|+.++. .+.
T Consensus 294 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~ 372 (430)
T 3tc9_A 294 ILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGR 372 (430)
T ss_dssp EEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSE
T ss_pred EEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCc
Confidence 99877542 211 111100 0 0111233 45553 45677777667778888883 443
No 277
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.08 E-value=0.0041 Score=58.12 Aligned_cols=237 Identities=10% Similarity=0.079 Sum_probs=123.9
Q ss_pred ceeEEEEeCC--CCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCC----e-EEEEecCCC
Q psy13076 49 PITALALSPD--RGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGN----S-VIIRNIENP 121 (423)
Q Consensus 49 ~V~~l~~~~~--~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~i~~~~~~ 121 (423)
....++|+|+ +..|+.+...+.|+.+|.+++.+..... ....+..+..+++|++++...++ . +...+.+.+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~--~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT--NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC--CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec--CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence 4568999984 3444444333899999998776654332 23446677889999855554321 2 222222211
Q ss_pred ccc-ccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCce
Q psy13076 122 AIS-DIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRER 199 (423)
Q Consensus 122 ~~~-~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~ 199 (423)
... ..+. .-.....++++| +|.+.++-..++.|+.+|..++..............-..++|+|+++.|.++......
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 110 1111 112345678899 6766656556788999998755441111111111222469999999977776554443
Q ss_pred eeEEEeec--CCcc--eecccC---------------CCcceeEEEE---------ecCCCeeEEEEeCCCeEEEEcCCC
Q psy13076 200 FGHVFMSE--TGTS--VGEISG---------------QSKPINSCDF---------KPSRPFRIITGSEDNTIAVFEGPP 251 (423)
Q Consensus 200 ~~~~~~~~--~~~~--~~~~~~---------------~~~~i~~~~~---------~~~~~~~~~s~s~d~~i~~~~~~~ 251 (423)
. ..+..+ ++.. ...+.+ .......+++ .+.+. +.++-...+.|+.++..
T Consensus 297 I-~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~~n~~I~~~~~~- 373 (433)
T 4hw6_A 297 I-YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDRDSHTVRVLTPE- 373 (433)
T ss_dssp E-EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEETTTTEEEEECTT-
T ss_pred E-EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEECCCCEEEEECCC-
Confidence 2 222222 1110 001111 1223556777 44433 34444556778888732
Q ss_pred ceeeeec-----------------cccccCeEEEEEC-CCCCEEEEEEecCeEEEEEC
Q psy13076 252 FKFKMTK-----------------QEHSRFVQAVRYS-PSGSHFASAGFDGKVFLYDG 291 (423)
Q Consensus 252 ~~~~~~~-----------------~~~~~~i~~l~~s-~~g~~l~s~s~dg~i~vwd~ 291 (423)
....... .........++++ ++|.++++=...+.|+.++.
T Consensus 374 G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 374 GRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp SEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 2221110 0112346778888 55655555445667777664
No 278
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.07 E-value=0.0069 Score=55.93 Aligned_cols=239 Identities=8% Similarity=-0.076 Sum_probs=136.2
Q ss_pred eEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEc-cCCcEEEEEcCCCce--eEEeeecCCCCCeeE
Q psy13076 104 NFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD-ISGKVRIWDTVNKEH--ILKNEFHPIGGPIKD 180 (423)
Q Consensus 104 ~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~-~d~~i~vwd~~~~~~--~~~~~~~~~~~~v~~ 180 (423)
.++++....++..+++......... ....+..++|++.+..|.-.+ ..+.|+.+++..... ...............
T Consensus 85 ~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 163 (400)
T 3p5b_L 85 YLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 163 (400)
T ss_dssp EEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred eeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence 4556677788888887665544433 345678999998665555544 467888888754210 001111111234678
Q ss_pred EEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeC-CCeEEEEcCCCceeeeecc
Q psy13076 181 IAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSE-DNTIAVFEGPPFKFKMTKQ 259 (423)
Q Consensus 181 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~-d~~i~~~~~~~~~~~~~~~ 259 (423)
+++.+.+..|..+...... ..+...+.......+.........+++.|.+.++..+-.. .+.|...+...........
T Consensus 164 lavD~~~~~lY~~d~~~~~-I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 164 LAVDWIHSNIYWTDSVLGT-VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp EEEETTTTEEEEEETTTTE-EEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred EEEEecCCceEEEECCCCe-EEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence 8998866666665544332 2233333222222223344557889999977665555433 3677777654322222222
Q ss_pred ccccCeEEEEECCCCCEEEEEE-ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076 260 EHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK 338 (423)
Q Consensus 260 ~~~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~ 338 (423)
..-.....|+++|++..|..+. ..+.|..+|....................++++. .+..+.+-...+.|..+|..++
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence 2334678899998877666554 4678999997543322222111223445678773 4456666667788999997777
Q ss_pred ceeeeee
Q psy13076 339 SAVSEFL 345 (423)
Q Consensus 339 ~~i~~~~ 345 (423)
+.+..+.
T Consensus 322 ~~~~~i~ 328 (400)
T 3p5b_L 322 SDVNLLA 328 (400)
T ss_dssp CCCEEEE
T ss_pred CceEEEe
Confidence 6655543
No 279
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.07 E-value=0.0051 Score=57.42 Aligned_cols=201 Identities=13% Similarity=0.103 Sum_probs=112.8
Q ss_pred eEEEEEECCC--CCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC--ceeeEEEeecC
Q psy13076 133 AVNVAKYSPS--GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR--ERFGHVFMSET 208 (423)
Q Consensus 133 ~i~~~~~sp~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~--~~~~~~~~~~~ 208 (423)
....++++|+ +..|..++..+.|+.+|..++..... .........++|+++|. ++++.... .....+.....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~---~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK---TTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE---CCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe---ecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECC
Confidence 4567899994 44555555558899999866553321 11234578999999999 55544321 11122222211
Q ss_pred -CcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCcee-e-eeccccccCeEEEEECCCCCEEEEE-EecC
Q psy13076 209 -GTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF-K-MTKQEHSRFVQAVRYSPSGSHFASA-GFDG 284 (423)
Q Consensus 209 -~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~-~-~~~~~~~~~i~~l~~s~~g~~l~s~-s~dg 284 (423)
+...............++++|....+.++-..++.|+.++...... . ............++++|+|++|..+ ...+
T Consensus 216 ~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 216 SGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp GTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred CCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 1110011112234566788884444344555677898888653333 1 1111112223469999999955444 4567
Q ss_pred eEEEEECC--Cccce--ecccc----c---------ccCCCeEEEEE---------CCCCCeEEEEeCCCcEEEEecCCc
Q psy13076 285 KVFLYDGA--SADLV--SELGN----P---------AHKGGVYAVAW---------KPDGTQLLTASGDKTCKLWDIETK 338 (423)
Q Consensus 285 ~i~vwd~~--~~~~~--~~~~~----~---------~~~~~i~~l~~---------~~~~~~l~s~s~d~~i~iwd~~~~ 338 (423)
.|+.++.. ++... ..+.. . +.-.....+++ .++|++.++-...+.|+.++. ++
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 89998754 22211 11100 0 11234678999 788888888777889999985 44
No 280
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.98 E-value=0.0091 Score=53.99 Aligned_cols=234 Identities=6% Similarity=-0.105 Sum_probs=133.2
Q ss_pred eEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEE-ccCCcEEEEEcCCCceeEEeeecCCCCCeeEEE
Q psy13076 104 NFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASG-DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIA 182 (423)
Q Consensus 104 ~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~ 182 (423)
.++++....+...+++.........+. ..+..++|++.+..|.-. ...+.|..++......... .... ......++
T Consensus 46 ~ll~~~~~~I~~i~~~g~~~~~~~~~~-~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~-~~~~-~~~p~gla 122 (349)
T 3v64_C 46 VLLFANRIDIRQVLPHRSEYTLLLNNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV-VSTG-LESPGGLA 122 (349)
T ss_dssp EEEEECBSCEEEECTTSCCEEEEECSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-ECSS-CSCCCEEE
T ss_pred eeEeecccceEEEeCCCCeeEEeecCC-CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE-EeCC-CCCccEEE
Confidence 344455555666666554444333333 346789999865555544 4568898898865442211 1111 12346889
Q ss_pred ECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCC-CeEEEEcCCCceeeeecccc
Q psy13076 183 WSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSED-NTIAVFEGPPFKFKMTKQEH 261 (423)
Q Consensus 183 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d-~~i~~~~~~~~~~~~~~~~~ 261 (423)
+.+.+..+..+...... ..+...+.......+.........+++.|.+..+..+-... +.|..++.............
T Consensus 123 vd~~~g~ly~~d~~~~~-I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~ 201 (349)
T 3v64_C 123 VDWVHDKLYWTDSGTSR-IEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH 201 (349)
T ss_dssp EETTTTEEEEEETTTTE-EEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSS
T ss_pred EecCCCeEEEEcCCCCe-EEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECC
Confidence 98877766665544332 22333332222222223345678899999777666665555 77888765432222222223
Q ss_pred ccCeEEEEECCCCCEEEEEE-ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcce
Q psy13076 262 SRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSA 340 (423)
Q Consensus 262 ~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 340 (423)
......++++|++..|..+. ..+.|..++...... ..+.. .......++++ ..+...++-...+.|..+|..+++.
T Consensus 202 ~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 202 LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKN 278 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EEEEe-CCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCc
Confidence 34568899998777665554 467899998754322 22211 12345678888 4556666666677888888666654
Q ss_pred eeee
Q psy13076 341 VSEF 344 (423)
Q Consensus 341 i~~~ 344 (423)
+..+
T Consensus 279 ~~~i 282 (349)
T 3v64_C 279 QEII 282 (349)
T ss_dssp CEEE
T ss_pred cEEe
Confidence 4443
No 281
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.94 E-value=0.00091 Score=67.40 Aligned_cols=192 Identities=11% Similarity=0.036 Sum_probs=107.0
Q ss_pred ceeEEEEe-cCCCeeEEEEeCCC----eEEEEcCCCc-eeeeeccccccCeEEEEECCCCCEEEEEEec-----CeEEEE
Q psy13076 221 PINSCDFK-PSRPFRIITGSEDN----TIAVFEGPPF-KFKMTKQEHSRFVQAVRYSPSGSHFASAGFD-----GKVFLY 289 (423)
Q Consensus 221 ~i~~~~~~-~~~~~~~~s~s~d~----~i~~~~~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~d-----g~i~vw 289 (423)
.+....|+ |++..+..+.+.+| .|++++.... .... .........++|+|||+.|+....| ..|+.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--DKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--CCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--ccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 46678899 99987666655443 4888887654 3110 0011113468899999988877775 368888
Q ss_pred ECCCccce--ecccccccCCCeEEEEECCCCCeEEEEeC---CCcEEEEecCCcc-ee--eeeeeCceeEeeEEEEE-ec
Q psy13076 290 DGASADLV--SELGNPAHKGGVYAVAWKPDGTQLLTASG---DKTCKLWDIETKS-AV--SEFLMGNQVEDQQVSCL-WQ 360 (423)
Q Consensus 290 d~~~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~s~s~---d~~i~iwd~~~~~-~i--~~~~~~~~~~~~~~~~~-~~ 360 (423)
++.++... ..+.. ........+.|+|||++|+..+. ...|.++|+.++. .. ..+.... .....+.. ..
T Consensus 253 ~lgt~~~~~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~--~~~~~s~~~~~ 329 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEE-HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE--KGVRYDVQMHG 329 (751)
T ss_dssp ETTSCGGGCEEEEEC-CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCC--TTCCEEEEEET
T ss_pred ECCCCchhcEEEEec-CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCC--CCceEEEeeee
Confidence 88765422 11111 12234568899999998886653 3358888987652 11 2221111 11122232 34
Q ss_pred CcEEEEEeCC---C--cEEEEecCCCCCceEE-eccCCC--ceeEEEecCCCCeEEEecCCCcEEEe
Q psy13076 361 GDYLLTVSLS---G--FISYLDVNNPSTPIRV-IKGHNK--PITALALSPDRGTVFTGSHDGFITRW 419 (423)
Q Consensus 361 g~~l~~~~~~---~--~i~~~~~~~~~~~~~~-~~~h~~--~v~~i~~sp~~~~l~s~s~D~~i~~W 419 (423)
|+.|+..+.. + .|..++..++... .. +..|.. .+.++++. .+.++++...|+..++|
T Consensus 330 g~~l~~~t~~~~a~~~~L~~~d~~~~~~~-~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 330 TSHLVILTNEGGAVNHKLLIAPRGQPSDW-SHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp TTEEEEEECTTTCTTCEEEEEETTSTTCC-CCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred CCEEEEEeCCCCCCCcEEEEEcCCCcccc-eeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence 7766655432 2 5667776542221 12 223333 34555554 23345666777765554
No 282
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.94 E-value=0.0044 Score=57.86 Aligned_cols=154 Identities=15% Similarity=0.231 Sum_probs=88.9
Q ss_pred eeEEEECC-CCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCC----eEEEEcCCC-
Q psy13076 178 IKDIAWSP-DNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN----TIAVFEGPP- 251 (423)
Q Consensus 178 v~~v~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~----~i~~~~~~~- 251 (423)
...++++| ++..|.++... .....++.+.+ .+..+.........+++++++..++++...++ .+..++...
T Consensus 139 P~~lavdp~~~g~Lyv~d~~--~~I~~id~~~~-~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~ 215 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQ--HPTRLIDFEKE-YVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG 215 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBT--EEEEEEETTTT-EEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred CCEEEECCCCCCeEEEEeCC--CcEEEEECCCC-EEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc
Confidence 46789998 46666665443 22233333332 33333345556788999999886555554322 233333211
Q ss_pred ceeeeeccccccCeEEEEECC-CCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCC-eEEEEeCCCc
Q psy13076 252 FKFKMTKQEHSRFVQAVRYSP-SGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGT-QLLTASGDKT 329 (423)
Q Consensus 252 ~~~~~~~~~~~~~i~~l~~s~-~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~s~s~d~~ 329 (423)
+.....+. .......++++| +|.++++-..++.|..++...+........ ........++|+|+|+ ++++-...+.
T Consensus 216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~-~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI-QDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc-CCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 11001111 123346688999 666666655678999999876543211111 1224568999999999 4555566788
Q ss_pred EEEEecC
Q psy13076 330 CKLWDIE 336 (423)
Q Consensus 330 i~iwd~~ 336 (423)
|..++..
T Consensus 294 I~~~~~d 300 (430)
T 3tc9_A 294 ILRSDYD 300 (430)
T ss_dssp EEEEEEE
T ss_pred EEEEeCC
Confidence 9998765
No 283
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.89 E-value=0.023 Score=55.61 Aligned_cols=399 Identities=11% Similarity=0.008 Sum_probs=187.6
Q ss_pred EEEEeCCEEEEEe-ccceEEEEeccCCCCceeecccccCceeEEEEeCCCC-eEEEecCCCceEEeecCCcceeecccCC
Q psy13076 11 SCLWQGDYLLTVS-LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNAKTEYIFATLPRT 88 (423)
Q Consensus 11 ~~~~~~~~~~~~~-~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~-~l~sg~~D~~i~vW~~~~~~~~~~~~~~ 88 (423)
+++++++.|..+. ..+.|..++++........+..--.....|++.+.++ +.++-...+.|.+-+.+..... .+...
T Consensus 46 d~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~-~l~~~ 124 (619)
T 3s94_A 46 DFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK-VLFWQ 124 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECS
T ss_pred EEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE-EEEeC
Confidence 3344455555443 4578888887643222223333335688999999554 5666677889999998765322 12112
Q ss_pred CCCCceEEeeCCCCCeEEEec-C--CeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEcc-CCcEEEEEcCCCc
Q psy13076 89 QRGQPIVLGGDPKGKNFLYTN-G--NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI-SGKVRIWDTVNKE 164 (423)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~-~--~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~-d~~i~vwd~~~~~ 164 (423)
.-..+-.+..+|.+..+.++. + ..+...+++...........-...+.+++++++..|..++. .+.|...|.....
T Consensus 125 ~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~ 204 (619)
T 3s94_A 125 ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN 204 (619)
T ss_dssp SCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE
T ss_pred CCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc
Confidence 223344456667654444443 3 34444455433222222223345688999997666665544 5678888875432
Q ss_pred eeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcc-----------------------
Q psy13076 165 HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKP----------------------- 221 (423)
Q Consensus 165 ~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 221 (423)
...... ... .....+++..+ .+..+ +-........+..+++....+......
T Consensus 205 ~~~~~~-~~~-~~P~gi~~~~~--~ly~t-d~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~n 279 (619)
T 3s94_A 205 RQAVVK-GSL-PHPFALTLFED--ILYWT-DWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDN 279 (619)
T ss_dssp EC-----------CCCEEESSS--EEEEE-CTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTG
T ss_pred cEEEEe-CCC-CCceEEEEeCC--EEEEe-cCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCC
Confidence 211000 011 11234555544 33332 211111222222222211111100000
Q ss_pred --ee-EEEEecC-------------------------CCeeEEEEeCCCeEEEEcCCCc--eeeeeccccccCeEEEEEC
Q psy13076 222 --IN-SCDFKPS-------------------------RPFRIITGSEDNTIAVFEGPPF--KFKMTKQEHSRFVQAVRYS 271 (423)
Q Consensus 222 --i~-~~~~~~~-------------------------~~~~~~s~s~d~~i~~~~~~~~--~~~~~~~~~~~~i~~l~~s 271 (423)
.. -|..+|. .++ ++.+. .+.|+..+.... ............+..++|+
T Consensus 280 g~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~-Ll~~~-~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d 357 (619)
T 3s94_A 280 GGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATEL-LLLAR-RTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYD 357 (619)
T ss_dssp GGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEE-EEEEE-SSCEEEEESSSTTCCCEECCCSCCSSEEEEEEE
T ss_pred CcccceEECCCCCCCceEeCCchheecccCcccCCCCceE-EEEEc-ccceEEEecCCCccceeEEeccccCccEEEEEE
Confidence 00 0111111 001 11111 122333322111 1000011112346789999
Q ss_pred CCCCEEEEEE-ecCeEEEEECCCccceecccccccCCCeEEEEECCC-CCeEEEEeCCCcEEEEecCCcceeeeeeeCce
Q psy13076 272 PSGSHFASAG-FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPD-GTQLLTASGDKTCKLWDIETKSAVSEFLMGNQ 349 (423)
Q Consensus 272 ~~g~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~ 349 (423)
+.+..|..+. ..+.|+.++.........+. .......++++++. ++...+-+..+.|.+.++.... ...+....-
T Consensus 358 ~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~--~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~~~l 434 (619)
T 3s94_A 358 PVEGYIYWTDDEVRAIRRSFIDGSGSQFVVT--AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKILISEDL 434 (619)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTTC
T ss_pred cCCCeEEEEeCCCCeEEEEEcCCCccEEEEE--CCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEEEEECCC
Confidence 8665555444 57788888876433222221 12245678999874 4555666667889999886543 222221111
Q ss_pred eEeeEEEEEecCcEEEEEeC--CCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEE-EecCCCcEEEeeC
Q psy13076 350 VEDQQVSCLWQGDYLLTVSL--SGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVF-TGSHDGFITRWNA 421 (423)
Q Consensus 350 ~~~~~~~~~~~g~~l~~~~~--~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~-s~s~D~~i~~W~~ 421 (423)
.....+.+.+...+|..... ...|...+...... .....+.-...+.|++.++++.|. +-+..+.|...++
T Consensus 435 ~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~-~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~ 508 (619)
T 3s94_A 435 EEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR-VVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNT 508 (619)
T ss_dssp CSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEES
T ss_pred CCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc-EEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEec
Confidence 22344555554333333322 24566655543222 122233345678999998666554 4455566766654
No 284
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.88 E-value=0.024 Score=55.54 Aligned_cols=378 Identities=11% Similarity=0.054 Sum_probs=178.7
Q ss_pred eccceEEEEeccCCCCceeecccccCceeEEEEeCCCC-eEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCC
Q psy13076 23 SLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPK 101 (423)
Q Consensus 23 ~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~-~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (423)
+....|+..|++........+...-+.+..++|++.+. +.++-...+.|+.++.+.......+.......+--++.++.
T Consensus 15 ~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~ 94 (619)
T 3s94_A 15 ANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL 94 (619)
T ss_dssp ECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETT
T ss_pred eccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEec
Confidence 45678999998753212222233344567899998655 45565667889999887542111111111223444666775
Q ss_pred CCeEEEec--CCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEcc--CCcEEEEEcCCCceeEEeeecCCCCC
Q psy13076 102 GKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI--SGKVRIWDTVNKEHILKNEFHPIGGP 177 (423)
Q Consensus 102 ~~~~~~~~--~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~ 177 (423)
++.+.++. .+.+.+.+++.........+.-.....+++.|.+.+|.-.+. .+.|...++....... . .......
T Consensus 95 ~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~-l-~~~~~~~ 172 (619)
T 3s94_A 95 GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI-I-INSEIYW 172 (619)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE-E-ECSSCSS
T ss_pred CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEE-E-EeCCCCC
Confidence 55555443 457777777654433333334455678899997555555543 3556665654322111 1 1111234
Q ss_pred eeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce----
Q psy13076 178 IKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK---- 253 (423)
Q Consensus 178 v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~---- 253 (423)
...++++++++.+..+-..... ......+.......+.+.......+++..+ .+.++-...+.|...+....+
T Consensus 173 P~Glald~~~~~LY~aD~~~~~-I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~ 249 (619)
T 3s94_A 173 PNGLTLDYEEQKLYWADAKLNF-IHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLRE 249 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTCC-EEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred CcEEEEEccCCEEEEEeCCCCe-EEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEE
Confidence 5789999988877776544332 222332221111111112222334444433 333343344555555432111
Q ss_pred ----------eee-----eccc-c-----ccCe--EE---------EEECCCC---------------CEEEEEEecCeE
Q psy13076 254 ----------FKM-----TKQE-H-----SRFV--QA---------VRYSPSG---------------SHFASAGFDGKV 286 (423)
Q Consensus 254 ----------~~~-----~~~~-~-----~~~i--~~---------l~~s~~g---------------~~l~s~s~dg~i 286 (423)
+.. +... + .... .| -+..|.| .+|+.+ ..+.|
T Consensus 250 i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i 328 (619)
T 3s94_A 250 IHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRTDL 328 (619)
T ss_dssp CCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCE
T ss_pred EecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE-cccce
Confidence 000 0000 0 0000 01 1112221 133333 34566
Q ss_pred EEEECCCcccee-cccccccCCCeEEEEECCCCC-eEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEE
Q psy13076 287 FLYDGASADLVS-ELGNPAHKGGVYAVAWKPDGT-QLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYL 364 (423)
Q Consensus 287 ~vwd~~~~~~~~-~~~~~~~~~~i~~l~~~~~~~-~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l 364 (423)
+..++....... .+.. ..-..+.+++|++.+. .+++-...+.|+.++...... ..+....-.....+++.|.+..|
T Consensus 329 ~~i~l~~~~~~~~~~~~-~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~-~~v~~~~~~~p~GlAvD~~~~~l 406 (619)
T 3s94_A 329 RRISLDTPDFTDIVLQL-EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS-QFVVTAQIAHPDGIAVDWVARNL 406 (619)
T ss_dssp EEEESSSTTCCCEECCC-SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEEEEETTTTEE
T ss_pred EEEecCCCccceeEEec-cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc-EEEEECCCCCcCceEEecccCcE
Confidence 666665443211 1111 1124467899998554 444545577898888865432 22221111123345666655555
Q ss_pred EEE-eCCCcEEEEecCCCCCceEEe-ccCCCceeEEEecCCCCe-EEEe
Q psy13076 365 LTV-SLSGFISYLDVNNPSTPIRVI-KGHNKPITALALSPDRGT-VFTG 410 (423)
Q Consensus 365 ~~~-~~~~~i~~~~~~~~~~~~~~~-~~h~~~v~~i~~sp~~~~-l~s~ 410 (423)
..+ +..+.|.+.+...... ..+ ..--...++|++.|...+ +.|-
T Consensus 407 Y~tD~~~~~I~v~~~~G~~~--~~l~~~~l~~P~~iavdp~~G~ly~tD 453 (619)
T 3s94_A 407 YWTDTGTDRIEVTRLNGTMR--KILISEDLEEPRAIVLDPMVGYMYWTD 453 (619)
T ss_dssp EEEETTTTEEEEEETTSCSC--EEEECTTCCSEEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCcEEEEeCCCCeE--EEEEECCCCCeeeEEEEcCCCcEEEec
Confidence 444 4566788887765432 222 223356789999997444 4443
No 285
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.84 E-value=0.028 Score=56.54 Aligned_cols=237 Identities=9% Similarity=-0.067 Sum_probs=131.1
Q ss_pred eEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEE-EEEccCCcEEEEEcCCCce--eEEeeecCCCCCeeE
Q psy13076 104 NFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEH--ILKNEFHPIGGPIKD 180 (423)
Q Consensus 104 ~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l-~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~v~~ 180 (423)
.++++....++..+++......+..+ ...+..++|++....| .+-...+.|+.+++..... ...............
T Consensus 397 ~Ll~an~~~Ir~i~l~~~~~~~l~~~-~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~G 475 (791)
T 3m0c_C 397 YLFFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 475 (791)
T ss_dssp EEEEECBSSEEEECTTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred ccccccccceeEeeccCCcceeeecC-CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcce
Confidence 45556666666666665544444333 3456789999855444 4444567888888764211 001111111234568
Q ss_pred EEECCCCCeEEEEEcCCceeeEEEeecCCcceec-ccCCCcceeEEEEecCCCeeEEEEeCC-CeEEEEcCCCceeeeec
Q psy13076 181 IAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE-ISGQSKPINSCDFKPSRPFRIITGSED-NTIAVFEGPPFKFKMTK 258 (423)
Q Consensus 181 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~s~s~d-~~i~~~~~~~~~~~~~~ 258 (423)
|++.+.++.|..+...... ..+...+ +..... +.........+++.|....+.++-... +.|...+..........
T Consensus 476 LAvD~~~~~LY~tD~~~~~-I~v~~ld-G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv 553 (791)
T 3m0c_C 476 LAVDWIHSNIYWTDSVLGT-VSVADTK-GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 553 (791)
T ss_dssp EEEETTTTEEEEEETTTTE-EEEEETT-SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred eeeeecCCcEEEEecCCCe-EEEEeCC-CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE
Confidence 9999888777766554433 2333333 222222 223445678899999876655554333 67777775543333222
Q ss_pred cccccCeEEEEECCCCCEEEEEE-ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCC
Q psy13076 259 QEHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET 337 (423)
Q Consensus 259 ~~~~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~ 337 (423)
.........|++++.+..|..+. ..+.|...++........+..........+|++.. +.++++-...+.|...|..+
T Consensus 554 ~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 554 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCC
Confidence 33335678899998777665554 45689999875433222221111223355777643 34555555667888888766
Q ss_pred cceeeee
Q psy13076 338 KSAVSEF 344 (423)
Q Consensus 338 ~~~i~~~ 344 (423)
++.+..+
T Consensus 633 G~~~~~l 639 (791)
T 3m0c_C 633 GSDVNLL 639 (791)
T ss_dssp CCCCEEE
T ss_pred CcceEEe
Confidence 6544433
No 286
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.81 E-value=0.016 Score=51.51 Aligned_cols=237 Identities=10% Similarity=-0.040 Sum_probs=125.9
Q ss_pred EEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCC-CCeEEEecCCCceEEeecCCcceeecccCCCCCCceEE
Q psy13076 18 YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPD-RGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVL 96 (423)
Q Consensus 18 ~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~-~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~ 96 (423)
+|+.+ ....|+.+|++........+-..-..+..++|.+. +.+.++-...+.|+.++.+....... .+
T Consensus 6 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~----------~~ 74 (318)
T 3sov_A 6 LLLYA-NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN----------VV 74 (318)
T ss_dssp EEEEE-CEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE----------EE
T ss_pred EEEEE-ccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE----------EE
Confidence 44443 35789999997643222222222335668999985 45566666778888887765311000 00
Q ss_pred eeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCC-CEEEEEccCCcEEEEEcCCCceeEEeeecCCC
Q psy13076 97 GGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSG-FYIASGDISGKVRIWDTVNKEHILKNEFHPIG 175 (423)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 175 (423)
. ........+++.+.+ .+..+-...+.|.+.+......... .....
T Consensus 75 ~-------------------------------~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l--~~~~~ 121 (318)
T 3sov_A 75 V-------------------------------SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL--FWQEL 121 (318)
T ss_dssp E-------------------------------ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE--ECSSC
T ss_pred c-------------------------------CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEE--EeCCC
Confidence 0 000123356666533 3334444567788888754322111 11122
Q ss_pred CCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecc-cCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCcee
Q psy13076 176 GPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEI-SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF 254 (423)
Q Consensus 176 ~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~ 254 (423)
.....+++.|.+..+..+..+..........+ +.....+ .......+.++++|.+..+.++-+..+.|..++......
T Consensus 122 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~ 200 (318)
T 3sov_A 122 DQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR 200 (318)
T ss_dssp SSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce
Confidence 34578999997776666543321112222222 2222222 233456788999997776566666778888887543222
Q ss_pred eeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecc
Q psy13076 255 KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL 300 (423)
Q Consensus 255 ~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~ 300 (423)
.............+++.. +.++.+-...+.|..++..+++....+
T Consensus 201 ~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 201 QAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp EEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEE
Confidence 111122233455666643 344555445678888887777655444
No 287
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.73 E-value=0.0051 Score=54.35 Aligned_cols=157 Identities=8% Similarity=0.179 Sum_probs=102.2
Q ss_pred CeEEEEECCCCCEEEEEE-ecCeEEEEECCCccceec-ccccc--cC--CCeEEEEE---CCCCCeEEEEe---------
Q psy13076 264 FVQAVRYSPSGSHFASAG-FDGKVFLYDGASADLVSE-LGNPA--HK--GGVYAVAW---KPDGTQLLTAS--------- 325 (423)
Q Consensus 264 ~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~~~~-~~~~~--~~--~~i~~l~~---~~~~~~l~s~s--------- 325 (423)
+.-+++|++....|..++ ..+.|..|+...+..... +.... .. ..+.+|.| .|+++++++.-
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 345688988666665555 799999999875543222 21111 11 13579999 68888877533
Q ss_pred ----CCCcEEEEecC---CcceeeeeeeC------------ceeEeeEEEEEecCcEEEEEeCC-CcEEEEecCCCCCce
Q psy13076 326 ----GDKTCKLWDIE---TKSAVSEFLMG------------NQVEDQQVSCLWQGDYLLTVSLS-GFISYLDVNNPSTPI 385 (423)
Q Consensus 326 ----~d~~i~iwd~~---~~~~i~~~~~~------------~~~~~~~~~~~~~g~~l~~~~~~-~~i~~~~~~~~~~~~ 385 (423)
.+..|..+|+. +++.+...... .......+...++|...++++.. +.|..++.... .+
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~--~~ 171 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK--TV 171 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC--CE
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC--EE
Confidence 26779999999 77665444322 11235566677789988888888 88777765432 22
Q ss_pred EEec------cCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076 386 RVIK------GHNKPITALALSPDRGTVFTGSHDGFITRWNAK 422 (423)
Q Consensus 386 ~~~~------~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~ 422 (423)
..+. ......+.|+++|+++.|+....++.+..+|+.
T Consensus 172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 2211 112237799999999988777669999888864
No 288
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.72 E-value=0.022 Score=50.62 Aligned_cols=235 Identities=10% Similarity=-0.054 Sum_probs=130.1
Q ss_pred EEEecCCeEEEEecCCCccc-ccccCCcceEEEEEECCCCCEE-EEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEE
Q psy13076 105 FLYTNGNSVIIRNIENPAIS-DIYTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIA 182 (423)
Q Consensus 105 ~~~~~~~~~~i~~~~~~~~~-~~~~~h~~~i~~~~~sp~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~ 182 (423)
++++.+..+...+++..... ............+.|++.+..| .+-...+.|..++.............. -.....++
T Consensus 7 ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~-l~~p~gla 85 (318)
T 3sov_A 7 LLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-LLSPDGLA 85 (318)
T ss_dssp EEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC-CSCCCEEE
T ss_pred EEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC-CCCccEEE
Confidence 45566667777777655311 1111122356688999854444 444456789889876542110011111 12356788
Q ss_pred ECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEe-CCCeEEEEcCCCceeeeecccc
Q psy13076 183 WSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS-EDNTIAVFEGPPFKFKMTKQEH 261 (423)
Q Consensus 183 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s-~d~~i~~~~~~~~~~~~~~~~~ 261 (423)
+.+.+..+..+...... ..+...+.......+.........+++.|.+..+..+-. ..+.|..++.............
T Consensus 86 vd~~~g~ly~~d~~~~~-I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~ 164 (318)
T 3sov_A 86 CDWLGEKLYWTDSETNR-IEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE 164 (318)
T ss_dssp EETTTTEEEEEETTTTE-EEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred EEcCCCeEEEEECCCCE-EEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECC
Confidence 88876666665444332 223333322221122234456788999987666455442 3567777764432211111222
Q ss_pred ccCeEEEEECCCCCEEEEEE-ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcce
Q psy13076 262 SRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSA 340 (423)
Q Consensus 262 ~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 340 (423)
-.....++++|++..|..+. ..+.|..+|..... ...+.. .......++++.. +..+.+-...+.|..+|..+++.
T Consensus 165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~-~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVK-GSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC-SCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEec-CCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence 34568899999777665554 46789999875322 222221 1234567888753 45556666678899999877765
Q ss_pred eeee
Q psy13076 341 VSEF 344 (423)
Q Consensus 341 i~~~ 344 (423)
+..+
T Consensus 242 ~~~i 245 (318)
T 3sov_A 242 LREI 245 (318)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 4443
No 289
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.67 E-value=0.028 Score=50.23 Aligned_cols=273 Identities=9% Similarity=0.080 Sum_probs=132.1
Q ss_pred cCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeec--ccCCC-CCCceEEeeCCCCCeEEEecCCeEEEEecCCCcc
Q psy13076 47 NKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFAT--LPRTQ-RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAI 123 (423)
Q Consensus 47 ~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 123 (423)
...+.+|.|.+++..++. +.++.|.. ..+.++--.. ..... ......+.+++ +..++......+ +...+.++-
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i~~-s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g~~g~i-~~S~DgG~t 110 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATLME-TRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVGEPPIM-LHTTDGGQS 110 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEEEE-ESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEEETTEE-EEESSTTSS
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeEEE-eCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEECCCeE-EEECCCCCC
Confidence 357889999877777775 45676533 3332321111 10001 11122334444 444444333322 223332221
Q ss_pred -cccc--cCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCcee
Q psy13076 124 -SDIY--TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF 200 (423)
Q Consensus 124 -~~~~--~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~ 200 (423)
.... ..+...+..+.+.+++..++.+. ++.| |...+.-..+..........+..+++.|++..+++. .... .
T Consensus 111 W~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v--~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g-~~G~-~ 185 (327)
T 2xbg_A 111 WSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAI--YRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVS-SRGS-F 185 (327)
T ss_dssp CEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCE--EEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEE-TTSS-E
T ss_pred ceECccccCCCCCeEEEEEECCCCEEEEeC-CccE--EEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEE-CCCc-E
Confidence 1111 12334567777777777776664 4543 333322111222222334568889999988766543 2221 1
Q ss_pred eEEEeecC-Ccceeccc-CCCcceeEEEEecCCCeeEEEEeCCCeEEEEc---CCCceeeeec-cccccCeEEEEECCCC
Q psy13076 201 GHVFMSET-GTSVGEIS-GQSKPINSCDFKPSRPFRIITGSEDNTIAVFE---GPPFKFKMTK-QEHSRFVQAVRYSPSG 274 (423)
Q Consensus 201 ~~~~~~~~-~~~~~~~~-~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~---~~~~~~~~~~-~~~~~~i~~l~~s~~g 274 (423)
+...+. +.....+. .....+..+.+.+++. ++..+.++.++... ...+...... ......+..+++.|++
T Consensus 186 --~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~--~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~ 261 (327)
T 2xbg_A 186 --YSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR--LWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPN 261 (327)
T ss_dssp --EEEECTTCSSCEEEECCSSSCEEEEEECTTSC--EEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSS
T ss_pred --EEEeCCCCCceeECCCCCCCccceeEECCCCC--EEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCC
Confidence 111222 33322221 2334567777877765 44555677777662 1111111100 0112347888999888
Q ss_pred CEEEEEEecCeEEEEECCCccceeccccc-ccCCCeEEEEECCCCCeEEEEeCCCcEEEEec
Q psy13076 275 SHFASAGFDGKVFLYDGASADLVSELGNP-AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDI 335 (423)
Q Consensus 275 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~ 335 (423)
..++++. +|.+. +....++....+... .....+.++.|.++++ ++.++.+|+|.-++-
T Consensus 262 ~~~~~g~-~g~i~-~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 262 EVWLAGG-AGALL-CSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp CEEEEES-TTCEE-EESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred EEEEEeC-CCeEE-EeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 7776654 66663 333334333322211 1234567888876554 556678898776653
No 290
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.67 E-value=0.028 Score=50.11 Aligned_cols=198 Identities=8% Similarity=0.189 Sum_probs=118.7
Q ss_pred CCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCC----CCe--EEEEEcCC--ceeeEEEeec--CCc
Q psy13076 141 PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD----NQR--MVVVGEGR--ERFGHVFMSE--TGT 210 (423)
Q Consensus 141 p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~----~~~--~~~~~~~~--~~~~~~~~~~--~~~ 210 (423)
|....++.....+.+.+||+ +++.+... . .+.++.+...|+ |+. +++++... .....++..+ ++
T Consensus 38 p~~s~ii~t~k~~gL~Vydl-~G~~l~~~--~--~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~- 111 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSL-DGKMLHSY--N--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG- 111 (355)
T ss_dssp GGGCEEEEEETTTEEEEEET-TSCEEEEE--C--CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-
T ss_pred CCccEEEEEcCCCCEEEEcC-CCcEEEEc--c--CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-
Confidence 34456666677789999999 55544332 1 256677776663 332 44555444 4445566443 33
Q ss_pred ceeccc-------CCCcceeEEEE--ecC-CCeeEEEEeCCCeEEEEcCC-------CceeeeeccccccCeEEEEECCC
Q psy13076 211 SVGEIS-------GQSKPINSCDF--KPS-RPFRIITGSEDNTIAVFEGP-------PFKFKMTKQEHSRFVQAVRYSPS 273 (423)
Q Consensus 211 ~~~~~~-------~~~~~i~~~~~--~~~-~~~~~~s~s~d~~i~~~~~~-------~~~~~~~~~~~~~~i~~l~~s~~ 273 (423)
.+..+. .....+..+++ +|. +.+.++....++.+..|+.. ..+...++.. ...+-.+.+.+.
T Consensus 112 ~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~ 190 (355)
T 3amr_A 112 TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDE 190 (355)
T ss_dssp CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETT
T ss_pred ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCC
Confidence 243331 11145555666 564 44456777788999888752 1222233322 235667888888
Q ss_pred CCEEEEEEecCeEEEEECC-----CccceecccccccCCCeEEEEE--CCCCC-eEEEEe-CCCcEEEEecC-Ccceeee
Q psy13076 274 GSHFASAGFDGKVFLYDGA-----SADLVSELGNPAHKGGVYAVAW--KPDGT-QLLTAS-GDKTCKLWDIE-TKSAVSE 343 (423)
Q Consensus 274 g~~l~s~s~dg~i~vwd~~-----~~~~~~~~~~~~~~~~i~~l~~--~~~~~-~l~s~s-~d~~i~iwd~~-~~~~i~~ 343 (423)
...|..+-++.-|..++.. +++.+...........+..|++ .++++ +|++++ .+.+..+||.+ +.+.+..
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 8899999998777777754 2334433322222346888888 56666 666666 57799999996 6666666
Q ss_pred ee
Q psy13076 344 FL 345 (423)
Q Consensus 344 ~~ 345 (423)
|.
T Consensus 271 f~ 272 (355)
T 3amr_A 271 FR 272 (355)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 291
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.65 E-value=0.022 Score=48.60 Aligned_cols=206 Identities=12% Similarity=0.144 Sum_probs=121.5
Q ss_pred cccccCceeEEEEeCCCCeEE-EecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCC
Q psy13076 43 IKGHNKPITALALSPDRGTVF-TGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENP 121 (423)
Q Consensus 43 ~~gh~~~V~~l~~~~~~~~l~-sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 121 (423)
+.|=.+.+..++++|++..|+ ....++.|..-|.+ +++...++..
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~--------------------------------- 67 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD--------------------------------- 67 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS---------------------------------
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC---------------------------------
Confidence 345456799999999876555 46678888888876 5555443210
Q ss_pred cccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCcee---EEeee----cCCCCCeeEEEECCCCCeEEEEE
Q psy13076 122 AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI---LKNEF----HPIGGPIKDIAWSPDNQRMVVVG 194 (423)
Q Consensus 122 ~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~---~~~~~----~~~~~~v~~v~~s~~~~~~~~~~ 194 (423)
+. ...-.+++.+++.++++.-.++.+.++++.....+ ....+ ...+.....++|+|+++.+.++.
T Consensus 68 -------g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~ 139 (255)
T 3qqz_A 68 -------FV-KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFK 139 (255)
T ss_dssp -------SC-SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEE
T ss_pred -------CC-CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEE
Confidence 00 12345667777777666556677777776543321 11111 11233468999999998888876
Q ss_pred cCCceeeEEEeec-CCcceecc-------cCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCcee-eeeccc-----
Q psy13076 195 EGRERFGHVFMSE-TGTSVGEI-------SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF-KMTKQE----- 260 (423)
Q Consensus 195 ~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~-~~~~~~----- 260 (423)
.........+... ....+..+ ......+..++++|.....++.+...+.+..+|...... .+.+..
T Consensus 140 E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l 219 (255)
T 3qqz_A 140 EKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGL 219 (255)
T ss_dssp ESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGC
T ss_pred CcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCc
Confidence 5544322222210 11111111 112345678999998877777778888999998654321 122221
Q ss_pred --cccCeEEEEECCCCCEEEEEEecCeEEEEEC
Q psy13076 261 --HSRFVQAVRYSPSGSHFASAGFDGKVFLYDG 291 (423)
Q Consensus 261 --~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~ 291 (423)
.....-.++|.|+|.++++ +..+.++.|..
T Consensus 220 ~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 220 SHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp SSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred ccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 1124568999999985555 66666767653
No 292
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.58 E-value=0.036 Score=49.19 Aligned_cols=226 Identities=10% Similarity=0.033 Sum_probs=123.8
Q ss_pred CceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEec--CCeEEEEecCC----CcccccccCCcceEEEEEECCC
Q psy13076 69 GFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIEN----PAISDIYTEHSCAVNVAKYSPS 142 (423)
Q Consensus 69 ~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~----~~~~~~~~~h~~~i~~~~~sp~ 142 (423)
..|+..|+++......+. ....+..+.+++.++.+.++. ...+...++++ ......+.........+++.+.
T Consensus 10 ~~I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp SSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred CeEEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence 457888887754433322 223455677777655554443 45777777665 2222222222234567888875
Q ss_pred CCEE-EEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecc-cCCCc
Q psy13076 143 GFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEI-SGQSK 220 (423)
Q Consensus 143 ~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 220 (423)
+..| ++-...+.|.+.+......... ..........+++.|.+..++.+..+.......... .+.....+ .....
T Consensus 88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~--~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~-dG~~~~~~~~~~~~ 164 (316)
T 1ijq_A 88 HSNIYWTDSVLGTVSVADTKGVKRKTL--FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL-NGVDIYSLVTENIQ 164 (316)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEE--EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET-TSCCEEEEECSSCS
T ss_pred CCeEEEEECCCCEEEEEeCCCCceEEE--EECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcC-CCCCeEEEEECCCC
Confidence 5544 4445678899999765432211 111124568999999877777665432111222222 23322222 23345
Q ss_pred ceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceee--eeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCcccee
Q psy13076 221 PINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK--MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVS 298 (423)
Q Consensus 221 ~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~--~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~ 298 (423)
..+.++++|.+..+.++-+..+.|..++....... ............+++. .+.++++-...+.|..++..+++...
T Consensus 165 ~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~ 243 (316)
T 1ijq_A 165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVN 243 (316)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred CceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceE
Confidence 67889999887766666667788998886432211 1111122335567774 34455555556788888876666544
Q ss_pred cc
Q psy13076 299 EL 300 (423)
Q Consensus 299 ~~ 300 (423)
.+
T Consensus 244 ~i 245 (316)
T 1ijq_A 244 LL 245 (316)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 293
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.58 E-value=0.053 Score=51.05 Aligned_cols=209 Identities=11% Similarity=0.016 Sum_probs=115.7
Q ss_pred eEEEEEECC-CCCEEEEEcc-CCcEEEEEcCCCceeEEeeecC-CCCCeeEEEE-------CCCCCeEEEEEcCCc----
Q psy13076 133 AVNVAKYSP-SGFYIASGDI-SGKVRIWDTVNKEHILKNEFHP-IGGPIKDIAW-------SPDNQRMVVVGEGRE---- 198 (423)
Q Consensus 133 ~i~~~~~sp-~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~-~~~~v~~v~~-------s~~~~~~~~~~~~~~---- 198 (423)
....++|+| ++..|..+.. .+.|++.|.+++.......... .......++| ++++..|+++.....
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467889999 3444544443 4678888887655432211111 1234788999 999997777765541
Q ss_pred e-eeEEEeecC-Ccce-----ecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC-------Ccee----------
Q psy13076 199 R-FGHVFMSET-GTSV-----GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP-------PFKF---------- 254 (423)
Q Consensus 199 ~-~~~~~~~~~-~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~-------~~~~---------- 254 (423)
. ...++.... +.-. ..+. .......++++|.+..+.++-..++.|..++.. ....
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 1 122222222 1110 1111 122345778888777767777788889999864 2211
Q ss_pred ---eeeccccccCeEEEEECCCCCEEEEE-EecCeEEEEEC--CCccce--eccc----ccc---------cCCCeE-EE
Q psy13076 255 ---KMTKQEHSRFVQAVRYSPSGSHFASA-GFDGKVFLYDG--ASADLV--SELG----NPA---------HKGGVY-AV 312 (423)
Q Consensus 255 ---~~~~~~~~~~i~~l~~s~~g~~l~s~-s~dg~i~vwd~--~~~~~~--~~~~----~~~---------~~~~i~-~l 312 (423)
.............++|+|+|++|..+ +..+.|+.++. ..+... ..+. ..+ .-.... .+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 01111122345789999999954444 45678888553 332210 1110 001 112244 45
Q ss_pred EEC-------CCCCeEEEEeCCCcEEEEecCCcceeeee
Q psy13076 313 AWK-------PDGTQLLTASGDKTCKLWDIETKSAVSEF 344 (423)
Q Consensus 313 ~~~-------~~~~~l~s~s~d~~i~iwd~~~~~~i~~~ 344 (423)
+.. ++|.+.++=.....||.++ .++ .+.++
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G-~v~Ti 415 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG-IVSTY 415 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC-BEEEE
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEe-CCC-CEEEE
Confidence 554 5677777777788999998 444 34444
No 294
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.57 E-value=0.035 Score=48.74 Aligned_cols=271 Identities=13% Similarity=0.163 Sum_probs=147.7
Q ss_pred cceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCe
Q psy13076 25 SGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKN 104 (423)
Q Consensus 25 dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (423)
+..|-+.|+.++..+.+.-..- .+.-.+|..+.+|--+ ..++.++|++++..++...-. ...+.+.|-.. ..
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~A----dsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~--e~VvfWkWis~-~~ 119 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT--DDVTFWKWISL-NT 119 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECCC----SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS--SCEEEEEECSS-SE
T ss_pred CCEEEEEECCCCCCcccccccc----ceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecC--CccEEEEecCC-Ce
Confidence 3478899999887765432222 2456688888776655 588999999998776655332 23334455433 33
Q ss_pred EEEecCCeEEEEecCC-CcccccccCCc----ceEEEEEECCCCCEEEEEcc-------CCcEEEEEcCCCceeEEeeec
Q psy13076 105 FLYTNGNSVIIRNIEN-PAISDIYTEHS----CAVNVAKYSPSGFYIASGDI-------SGKVRIWDTVNKEHILKNEFH 172 (423)
Q Consensus 105 ~~~~~~~~~~i~~~~~-~~~~~~~~~h~----~~i~~~~~sp~~~~l~s~~~-------d~~i~vwd~~~~~~~~~~~~~ 172 (423)
+..-.+..+..|++++ ....++|..|. ..|..-+.+++.+.++-.+- .|.+++|..+.+.... ..
T Consensus 120 L~lVT~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~---ie 196 (365)
T 2xzh_A 120 VALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP---IE 196 (365)
T ss_dssp EEEEESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEE---EC
T ss_pred EEEEcCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccce---ee
Confidence 4445678899999874 45566666664 57777888999987765442 3778899887653221 11
Q ss_pred CCCCCeeEEEECCCC----CeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEc
Q psy13076 173 PIGGPIKDIAWSPDN----QRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE 248 (423)
Q Consensus 173 ~~~~~v~~v~~s~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~ 248 (423)
++.+.. ..+-.+| ..+++.+.....-+.+...+.+.. |.+.- .-.-+.+-++
T Consensus 197 Ghaa~F--~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~-----------------~~~~~----~f~kk~vdi~- 252 (365)
T 2xzh_A 197 GHAASF--AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP-----------------PTGNQ----PFPKKAVDVF- 252 (365)
T ss_dssp CSEEEE--EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSC-----------------CTTCC----CCCCEEEEEC-
T ss_pred eeeeee--EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCC-----------------CCCCC----Ccccccceee-
Confidence 111111 1111111 122222110000011111111100 00000 0000011111
Q ss_pred CCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCC
Q psy13076 249 GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK 328 (423)
Q Consensus 249 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~ 328 (423)
...+...++..++..++.-..+..-+.-|.|.+||+.++.++..-.. ....|..-+-+.+..=++.....|
T Consensus 253 -------fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrI--S~d~iF~ta~~~~~~Gi~~Vnr~G 323 (365)
T 2xzh_A 253 -------FPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI--SGETIFVTAPHEATAGIIGVNRKG 323 (365)
T ss_dssp -------CCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEEEGGGTEEEEEETTC
T ss_pred -------CCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEecc--CCCceEEecccCCCCcEEEEcCCC
Confidence 12233456677889999888898899999999999999988755432 234444444433333344444556
Q ss_pred cEEEEecCCcc
Q psy13076 329 TCKLWDIETKS 339 (423)
Q Consensus 329 ~i~iwd~~~~~ 339 (423)
.|.--.+...+
T Consensus 324 qVl~v~v~~~~ 334 (365)
T 2xzh_A 324 QVLSVCVEEEN 334 (365)
T ss_dssp EEEEEEECTTT
T ss_pred EEEEEEECccc
Confidence 55554444433
No 295
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.54 E-value=0.00097 Score=66.43 Aligned_cols=234 Identities=9% Similarity=-0.077 Sum_probs=121.3
Q ss_pred EEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEc-cCCcEEEEEcCC----CceeEEeeecCCCCCeeE
Q psy13076 106 LYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD-ISGKVRIWDTVN----KEHILKNEFHPIGGPIKD 180 (423)
Q Consensus 106 ~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~-~d~~i~vwd~~~----~~~~~~~~~~~~~~~v~~ 180 (423)
++.....++..+++......+.... ..+..++|++.+..|+..+ ..+.|+.+++.. ..... ...........
T Consensus 381 l~~~~~~I~~id~~~~~~~~~~~~~-~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~--~i~~~~~~P~g 457 (699)
T 1n7d_A 381 FFTNRHEVRKMTLDRSEYTSLIPNL-RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT--VISRDIQAPDG 457 (699)
T ss_dssp CCCCTTC-CEECTTSCCEECCSCCC-TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC--BCCSCC--CCC
T ss_pred EecCccceEEEeCCCCcceeeeccC-cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE--EEeCCCCCcce
Confidence 3444556666666655544433322 3456788998766666554 457898888764 11110 01000122456
Q ss_pred EEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCC-CeEEEEcCCCceeeeecc
Q psy13076 181 IAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSED-NTIAVFEGPPFKFKMTKQ 259 (423)
Q Consensus 181 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d-~~i~~~~~~~~~~~~~~~ 259 (423)
|++.+.+..|+++...... ..++..+.......+.........+++.|.+.++.++-... +.|..++...........
T Consensus 458 lavD~~~g~LY~tD~~~~~-I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~ 536 (699)
T 1n7d_A 458 LAVDWIHSNIYWTDSVLGT-VSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 536 (699)
T ss_dssp EECCCSSSBCEECCTTTSC-EEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC
T ss_pred EEEEeeCCcEEEEeccCCe-EEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe
Confidence 7887665555544322222 23333332222222222234567788888766545444332 567776543222111111
Q ss_pred ccccCeEEEEECCCCCEE-EEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076 260 EHSRFVQAVRYSPSGSHF-ASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK 338 (423)
Q Consensus 260 ~~~~~i~~l~~s~~g~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~ 338 (423)
........|+++|++..| ++-+..+.|..+++........+..........+|++..+ .++++....+.|..+|..++
T Consensus 537 ~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 537 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 223345679999986654 4444567899999754322211111111223446666554 56666667788999998777
Q ss_pred ceeeee
Q psy13076 339 SAVSEF 344 (423)
Q Consensus 339 ~~i~~~ 344 (423)
+.+..+
T Consensus 616 ~~~~~i 621 (699)
T 1n7d_A 616 SDVNLL 621 (699)
T ss_dssp EEEECC
T ss_pred CceEEe
Confidence 665544
No 296
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.54 E-value=0.025 Score=49.91 Aligned_cols=197 Identities=12% Similarity=0.079 Sum_probs=117.3
Q ss_pred ceeEEEEecCCCeeEEEEeCCCeEEEEcCCCcee-eeeccc----c--ccCeEEEEE---CCCCCEEEEEEe--------
Q psy13076 221 PINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF-KMTKQE----H--SRFVQAVRY---SPSGSHFASAGF-------- 282 (423)
Q Consensus 221 ~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~-~~~~~~----~--~~~i~~l~~---s~~g~~l~s~s~-------- 282 (423)
...+++|++.+....++.-..++|..|+...... ...... . ...+..+.+ .|+|+++++...
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 4557788876655344444789999998653322 112221 1 123578999 688888776442
Q ss_pred -----cCeEEEEECC---Cccceecccccc-----------cCCCeEEEEECCCCCeEEEEeCC-CcEEEEecCCcceee
Q psy13076 283 -----DGKVFLYDGA---SADLVSELGNPA-----------HKGGVYAVAWKPDGTQLLTASGD-KTCKLWDIETKSAVS 342 (423)
Q Consensus 283 -----dg~i~vwd~~---~~~~~~~~~~~~-----------~~~~i~~l~~~~~~~~l~s~s~d-~~i~iwd~~~~~~i~ 342 (423)
+..+..+|+. +++.+....... -.....+++..++|+.-++++.- +.|...+.... .+.
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~ 172 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVS 172 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEE
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEe
Confidence 6789999998 776654332111 11247899999999999988887 77777766544 233
Q ss_pred eeeeCce-----eEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCC-ceEEec-cCC---CceeEE-EecCCCCe-EEEe
Q psy13076 343 EFLMGNQ-----VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPST-PIRVIK-GHN---KPITAL-ALSPDRGT-VFTG 410 (423)
Q Consensus 343 ~~~~~~~-----~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~~-~h~---~~v~~i-~~sp~~~~-l~s~ 410 (423)
.+....+ ....-+...++|..|++....+.+..+|+..+.. ++..-+ |.. .....+ .--.+++. |++.
T Consensus 173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~ 252 (334)
T 2p9w_A 173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGA 252 (334)
T ss_dssp EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEE
T ss_pred eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEc
Confidence 3322221 1122456677899998887799999999885433 122110 321 123333 33346666 5555
Q ss_pred cCCCcEEE
Q psy13076 411 SHDGFITR 418 (423)
Q Consensus 411 s~D~~i~~ 418 (423)
+..+.+.+
T Consensus 253 ~~~~~~~l 260 (334)
T 2p9w_A 253 RAPYAISF 260 (334)
T ss_dssp ETTEEEEE
T ss_pred CCCCEEEE
Confidence 55554444
No 297
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.48 E-value=0.072 Score=50.16 Aligned_cols=239 Identities=12% Similarity=0.137 Sum_probs=127.1
Q ss_pred eeEEEECC-CCCeEEEEEcCCceeeEEEeecCCcceecccC----CCcceeEEEE-------ecCCCeeEEEEeCCC---
Q psy13076 178 IKDIAWSP-DNQRMVVVGEGRERFGHVFMSETGTSVGEISG----QSKPINSCDF-------KPSRPFRIITGSEDN--- 242 (423)
Q Consensus 178 v~~v~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~-------~~~~~~~~~s~s~d~--- 242 (423)
...|+|+| +...|+++.... ....+.+...+ .+..+.. .......++| ++++..++++...++
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~-~~i~~ID~~~~-~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGH-KAIQLIDLKNR-MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETE-EEEEEEETTTT-EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCEEEEccCCCCEEEEEECCC-CeEEEEECCCC-EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 46789999 466666655432 22222333332 2222221 2235788999 999886555544431
Q ss_pred ---eEEEEcCCC-ceee-----eeccccccCeEEEEECCCCC-EEEEEEecCeEEEEECC-------Cccc---------
Q psy13076 243 ---TIAVFEGPP-FKFK-----MTKQEHSRFVQAVRYSPSGS-HFASAGFDGKVFLYDGA-------SADL--------- 296 (423)
Q Consensus 243 ---~i~~~~~~~-~~~~-----~~~~~~~~~i~~l~~s~~g~-~l~s~s~dg~i~vwd~~-------~~~~--------- 296 (423)
.+.+++... ..+. ..... ......++++|++. ++++-..++.|..+|.. ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 255554221 1111 11111 12335678899655 45555577889999987 4443
Q ss_pred --eecccccccCCCeEEEEECCCCCe-EEEEeCCCcEEEEecC--Cccee--eeeeeC--c-----------ee-Eee-E
Q psy13076 297 --VSELGNPAHKGGVYAVAWKPDGTQ-LLTASGDKTCKLWDIE--TKSAV--SEFLMG--N-----------QV-EDQ-Q 354 (423)
Q Consensus 297 --~~~~~~~~~~~~i~~l~~~~~~~~-l~s~s~d~~i~iwd~~--~~~~i--~~~~~~--~-----------~~-~~~-~ 354 (423)
...+...........++|+|+|+. .++=+....|+.++.. .+... ..+... . .. ... -
T Consensus 298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g 377 (496)
T 3kya_A 298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG 377 (496)
T ss_dssp TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence 111111122345689999999995 4554667789886653 32210 111110 0 00 011 1
Q ss_pred EEEE-------ecCcEEEEEeCCCcEEEEecCCCCCceEEeccC--------------C----------CceeEEEecCC
Q psy13076 355 VSCL-------WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGH--------------N----------KPITALALSPD 403 (423)
Q Consensus 355 ~~~~-------~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h--------------~----------~~v~~i~~sp~ 403 (423)
+... .+|..+++-..+..|+.++. ++ .+..+.|. . ..-..|++.++
T Consensus 378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G--~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~ 454 (496)
T 3kya_A 378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG--IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV 454 (496)
T ss_dssp EEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC--BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred EEEccccccccCCCeEEEEECCCCEEEEEeC-CC--CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence 1221 23444455556677888873 22 33343321 1 23678999997
Q ss_pred -CCeEEEecCCCcEEEeeCC
Q psy13076 404 -RGTVFTGSHDGFITRWNAK 422 (423)
Q Consensus 404 -~~~l~s~s~D~~i~~W~~~ 422 (423)
+.++++=.....||.++++
T Consensus 455 ~g~lyVaD~~N~rIrki~~~ 474 (496)
T 3kya_A 455 KEMFYVHDQVGHTIRTISME 474 (496)
T ss_dssp TTEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEECC
Confidence 7777777888899988764
No 298
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.28 E-value=0.0045 Score=61.66 Aligned_cols=227 Identities=10% Similarity=0.045 Sum_probs=118.7
Q ss_pred CCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEec--CCeEEEEecCC----CcccccccCCcceEEEEEECC
Q psy13076 68 DGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIEN----PAISDIYTEHSCAVNVAKYSP 141 (423)
Q Consensus 68 D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~----~~~~~~~~~h~~~i~~~~~sp 141 (423)
.+.|++.++.+......+.. ...+..+.+++.++.++++. ...+...+++. ......+.........+++.+
T Consensus 385 ~~~I~~id~~~~~~~~~~~~--~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN--LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC--CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred ccceEEEeCCCCcceeeecc--CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 35777888876554333221 22344456676665555543 45666666654 222222222222345678886
Q ss_pred CCC-EEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec-CCcceecc-cCC
Q psy13076 142 SGF-YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE-TGTSVGEI-SGQ 218 (423)
Q Consensus 142 ~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~ 218 (423)
.+. +.++-...+.|.+.+........ ...........+++.|.+..|+.+..+.. ..++... .+.....+ ...
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~--l~~~~~~~P~giavDp~~g~ly~td~~~~--~~I~~~~~dG~~~~~l~~~~ 538 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVKRKT--LFREQGSKPRAIVVDPVHGFMYWTDWGTP--AKIKKGGLNGVDIYSLVTEN 538 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCCEEE--ECCCSSCCCCCEECCSSSSCCEECCCSSS--CCEEBCCSSSCCCCEESCSS
T ss_pred eCCcEEEEeccCCeEEEEecCCCceEE--EEeCCCCCcceEEEccCCCcEEEcccCCC--CeEEEEeCCCCCeeEEEeCC
Confidence 444 44444456889999876543221 11111133577899997766655432221 1222222 12222222 223
Q ss_pred CcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecc--ccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccc
Q psy13076 219 SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ--EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADL 296 (423)
Q Consensus 219 ~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~--~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~ 296 (423)
....+.++++|.+..+.++-+..+.|..++........... ........+++..+ .++++....+.|..++..+++.
T Consensus 539 l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 539 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEE
T ss_pred CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCc
Confidence 34567899998877666666777889998864322221111 11122334555443 3445555567899999878776
Q ss_pred eeccc
Q psy13076 297 VSELG 301 (423)
Q Consensus 297 ~~~~~ 301 (423)
+..+.
T Consensus 618 ~~~i~ 622 (699)
T 1n7d_A 618 VNLLA 622 (699)
T ss_dssp EECCC
T ss_pred eEEee
Confidence 66654
No 299
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.24 E-value=0.12 Score=47.53 Aligned_cols=223 Identities=12% Similarity=-0.011 Sum_probs=124.3
Q ss_pred CCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCC----cceecccCCCcceeEEEE
Q psy13076 152 SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG----TSVGEISGQSKPINSCDF 227 (423)
Q Consensus 152 d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~ 227 (423)
...|+..++........ . .....+..++|++.+..+..+......+ ..+..+.. .....+.........+++
T Consensus 91 ~~~I~~i~l~~~~~~~~--~-~~~~~~~~l~~d~~~~~lywsD~~~~~I-~~~~~~g~~~~~~~~~~~~~~~~~p~glav 166 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSL--I-PNLRNVVALDTEVASNRIYWSDLSQRMI-CSTQLDRAHGVSSYDTVISRDIQAPDGLAV 166 (400)
T ss_dssp TTEEEEECTTSCSCEEE--E-CSCSCEEEEEEETTTTEEEEEETTTTEE-EEEEC------CCCEEEECSSCSCEEEEEE
T ss_pred cceeEEEccCCcceeEe--c-cccCcceEEeeeeccCceEEEecCCCeE-EEEEcccCCCCCcceEEEeCCCCCcccEEE
Confidence 36788888765543221 1 1234577899999877776665444332 22222221 111222223445678888
Q ss_pred ecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEe--cCeEEEEECCCccceeccccccc
Q psy13076 228 KPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGF--DGKVFLYDGASADLVSELGNPAH 305 (423)
Q Consensus 228 ~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~ 305 (423)
.+.+..+.++-...+.|.+.+...................++++|.+.+|..+.. .+.|...++.... ...+.. ..
T Consensus 167 D~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~-~~~~~~-~~ 244 (400)
T 3p5b_L 167 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVT-EN 244 (400)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS-CEEEEC-SS
T ss_pred EecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc-cEEEEE-CC
Confidence 8755555566667788888886543332222233345788999997666655543 3678888865332 222211 12
Q ss_pred CCCeEEEEECCCCCeEEEE-eCCCcEEEEecCCcceeeeeeeCce--eEeeEEEEEecCcEEEEEeCCCcEEEEecCCCC
Q psy13076 306 KGGVYAVAWKPDGTQLLTA-SGDKTCKLWDIETKSAVSEFLMGNQ--VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPS 382 (423)
Q Consensus 306 ~~~i~~l~~~~~~~~l~s~-s~d~~i~iwd~~~~~~i~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~ 382 (423)
-.....|+++|++..|..+ ...+.|..+|+.... ...+..... .....+++ ..+..+.+-...+.|..+|..++.
T Consensus 245 l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 245 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-CEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc-cEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCC
Confidence 3457899999877666554 556789999986543 233322110 11112333 234444455566788888865543
No 300
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.13 E-value=0.27 Score=49.46 Aligned_cols=222 Identities=12% Similarity=-0.037 Sum_probs=120.8
Q ss_pred CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCC----cceecccCCCcceeEEEEe
Q psy13076 153 GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG----TSVGEISGQSKPINSCDFK 228 (423)
Q Consensus 153 ~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~ 228 (423)
..|+..++...+.... ......+..++|.+....++.+......+. .+..+.. .....+......+..+++.
T Consensus 404 ~~Ir~i~l~~~~~~~l---~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~-~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD 479 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTSL---IPNLRNVVALDTEVASNRIYWSDLSQRMIC-STQLDRAHGVSSYDTVISRDIQAPDGLAVD 479 (791)
T ss_dssp SSEEEECTTSCCCEEE---ECSCSSEEEEEEETTTTEEEEEETTTTEEE-EEEC--------CEEEECSSCSCCCEEEEE
T ss_pred cceeEeeccCCcceee---ecCCCceEEEeecccCCeeEEeeccceeEE-EEeccCCCCCcceeEEEecCCCCcceeeee
Confidence 4577777654433211 112245678999987776666554443322 2222211 1122222244556788888
Q ss_pred cCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEe-c-CeEEEEECCCccceecccccccC
Q psy13076 229 PSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGF-D-GKVFLYDGASADLVSELGNPAHK 306 (423)
Q Consensus 229 ~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~-d-g~i~vwd~~~~~~~~~~~~~~~~ 306 (423)
+.+..+.++-...+.|.+.+...................|+++|.+.+|..+.. . +.|...++.... ...+.. ...
T Consensus 480 ~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~-~~~lv~-~~l 557 (791)
T 3m0c_C 480 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVT-ENI 557 (791)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEEC-SSC
T ss_pred ecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-eEEEEe-CCC
Confidence 877666667777888998886543332222233345789999998666655543 2 678888875433 333321 223
Q ss_pred CCeEEEEECCCCCeEEEE-eCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEE-eCCCcEEEEecCCC
Q psy13076 307 GGVYAVAWKPDGTQLLTA-SGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTV-SLSGFISYLDVNNP 381 (423)
Q Consensus 307 ~~i~~l~~~~~~~~l~s~-s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~-~~~~~i~~~~~~~~ 381 (423)
....+|++++.+..|..+ .....|...++..... ..+..........+.+...+++|... ...+.|...|..++
T Consensus 558 ~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 558 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCC
Confidence 467899999766655554 4566899999865432 22221110001112222234454433 45567777776554
No 301
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.08 E-value=0.16 Score=45.81 Aligned_cols=226 Identities=13% Similarity=0.101 Sum_probs=109.0
Q ss_pred ceEEeeCCCCCeEEEecCCeEEEEecCCCcccc-----cccCCcceEEEEEECCC---CCEEEEEcc-C-----CcEEEE
Q psy13076 93 PIVLGGDPKGKNFLYTNGNSVIIRNIENPAISD-----IYTEHSCAVNVAKYSPS---GFYIASGDI-S-----GKVRIW 158 (423)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~h~~~i~~~~~sp~---~~~l~s~~~-d-----~~i~vw 158 (423)
+..+.++|+|..++......+.+.+ ++.... ++..-......++|+|+ +..|..+.. . ..|..+
T Consensus 33 P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~ 110 (352)
T 2ism_A 33 PWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRL 110 (352)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEE
T ss_pred ceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEE
Confidence 4456777888876666556666665 232111 12222356789999998 555544433 2 567777
Q ss_pred EcCCCce----eEEeeec---CCCCCeeEEEECCCCCeEEEEEcCCc---------eeeEEEeecC-Cc-----------
Q psy13076 159 DTVNKEH----ILKNEFH---PIGGPIKDIAWSPDNQRMVVVGEGRE---------RFGHVFMSET-GT----------- 210 (423)
Q Consensus 159 d~~~~~~----~~~~~~~---~~~~~v~~v~~s~~~~~~~~~~~~~~---------~~~~~~~~~~-~~----------- 210 (423)
+...... .....+. ........++|.|||...++.++... ..+.++..+. +.
T Consensus 111 ~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~ 190 (352)
T 2ism_A 111 RHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRR 190 (352)
T ss_dssp EECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCT
T ss_pred EeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCC
Confidence 7653211 1111121 11112368999999975555443211 1123333221 10
Q ss_pred --ceecccCCCcceeEEEEec-CCCeeEEEEe-CCC-------eEEEEcCCC-c---------------eeeeecccccc
Q psy13076 211 --SVGEISGQSKPINSCDFKP-SRPFRIITGS-EDN-------TIAVFEGPP-F---------------KFKMTKQEHSR 263 (423)
Q Consensus 211 --~~~~~~~~~~~i~~~~~~~-~~~~~~~s~s-~d~-------~i~~~~~~~-~---------------~~~~~~~~~~~ 263 (423)
....+..-......++|+| .+.. .++-. .+. .|....... + .....+ .+..
T Consensus 191 ~~~~~i~a~G~rnp~g~a~d~~~g~l-~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-~~~~ 268 (352)
T 2ism_A 191 GARPEVYSLGHRNPQGLAWHPKTGEL-FSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-PQGF 268 (352)
T ss_dssp TSCTTEEEECCSEECCCEECTTTCCE-EEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-TTCC
T ss_pred CCCccEEEEcCCCcccEEEECCCCCE-EEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-CCCC
Confidence 0011111123466788888 4443 33322 222 244332110 0 000011 1112
Q ss_pred CeEEEEECCCCCEEEEEEecCeEEEEECCCccc------eecccccccCCCeEEEEECCCCCeEEEEe
Q psy13076 264 FVQAVRYSPSGSHFASAGFDGKVFLYDGASADL------VSELGNPAHKGGVYAVAWKPDGTQLLTAS 325 (423)
Q Consensus 264 ~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~------~~~~~~~~~~~~i~~l~~~~~~~~l~s~s 325 (423)
....++| .+|.++++.-..+.|...+...... ...+. .-...+.++++.|||.+.++..
T Consensus 269 ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~--~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 269 PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL--SGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE--ESSCCEEEEEECTTSCEEEEEC
T ss_pred CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec--ccCCCeeEEEECCCCcEEEEEe
Confidence 3456666 4666665555566777766543321 11121 1135688999999998777653
No 302
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.04 E-value=0.28 Score=48.03 Aligned_cols=403 Identities=10% Similarity=0.032 Sum_probs=198.2
Q ss_pred eeeEEEEeCCEE-EEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeE-EEe-cCCCceEEeecCCcceeec
Q psy13076 8 QQVSCLWQGDYL-LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTV-FTG-SHDGFITRWNAKTEYIFAT 84 (423)
Q Consensus 8 ~~~~~~~~~~~~-~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l-~sg-~~D~~i~vW~~~~~~~~~~ 84 (423)
.-+|++|.++.| .+-...+.|.+.+++. ......+...-..-..|++.|....| +|- +..+.|...+++.......
T Consensus 83 ~GlAvD~~~~~LY~tD~~~~~I~v~~~dG-~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l 161 (628)
T 4a0p_A 83 EGMAVDWLGKNLYWADTGTNRIEVSKLDG-QHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL 161 (628)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTS-TTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred ceEEEEeCCCEEEEEECCCCEEEEEecCC-CcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE
Confidence 468999965555 4445568899999864 22222333334456799999855444 443 2356777777664432211
Q ss_pred ccCCCCCCceEEeeCCCCCeEEEec--CCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCC
Q psy13076 85 LPRTQRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 162 (423)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~ 162 (423)
.. .-..+..+..+++++.+.+.. .+.+...+++.... .++.........+++.. +....+-...+.|...|..+
T Consensus 162 ~~--~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~t 237 (628)
T 4a0p_A 162 VP--NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTS 237 (628)
T ss_dssp EC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred EC--CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCC
Confidence 11 223455677787666555543 45677777765433 33333333344666654 33334444467787777544
Q ss_pred Ccee--EEe---------eecCC-----------CCCeeEEEEC-CCCCeEEEEEcCC------------ceee------
Q psy13076 163 KEHI--LKN---------EFHPI-----------GGPIKDIAWS-PDNQRMVVVGEGR------------ERFG------ 201 (423)
Q Consensus 163 ~~~~--~~~---------~~~~~-----------~~~v~~v~~s-~~~~~~~~~~~~~------------~~~~------ 201 (423)
++.. ... .++.. .+.+..++.. |.+.+-..+..+. ..+.
T Consensus 238 g~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~ 317 (628)
T 4a0p_A 238 GQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKS 317 (628)
T ss_dssp CCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETT
T ss_pred CCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccc
Confidence 3211 100 01100 0011112211 1121111111000 0000
Q ss_pred --EEEeecCCcc-eeccc-CCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccc------cccCeEEEEEC
Q psy13076 202 --HVFMSETGTS-VGEIS-GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE------HSRFVQAVRYS 271 (423)
Q Consensus 202 --~~~~~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~------~~~~i~~l~~s 271 (423)
+....+.... ...+. .....+..++|.+....+..+-...+.|+.++............ ....+..+++.
T Consensus 318 ~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD 397 (628)
T 4a0p_A 318 AINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSID 397 (628)
T ss_dssp EEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEE
T ss_pred eEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEee
Confidence 0000011000 00111 12234667888887666556555667777776432211111111 23356789999
Q ss_pred CCCCEE-EEEEecCeEEEEECCCccceecccccccCCCeEEEEECC-CCCeEEEEeCCC--cEEEEecCCcceeeeeeeC
Q psy13076 272 PSGSHF-ASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP-DGTQLLTASGDK--TCKLWDIETKSAVSEFLMG 347 (423)
Q Consensus 272 ~~g~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~s~s~d~--~i~iwd~~~~~~i~~~~~~ 347 (423)
+.++.| .+-+..+.|.+.++. ++....+.. .......+++++| +|..+.+-.... .|...+.... ....+...
T Consensus 398 ~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~-~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~-~~~~l~~~ 474 (628)
T 4a0p_A 398 IYSRYIYWTCEATNVINVTRLD-GRSVGVVLK-GEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGT-EREVLFFS 474 (628)
T ss_dssp TTTTEEEEEETTTTEEEEEETT-SCEEEEEEE-CTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSC-SCEEEECS
T ss_pred ccCCeEEEEcCCCCEEEEEECC-CCeEEEEEe-CCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCC-CcEEEEec
Confidence 987755 455567788888874 443333321 1234578999999 565555543333 4555555432 22222211
Q ss_pred ceeEeeEEEEEecCcEEEEEe-CCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076 348 NQVEDQQVSCLWQGDYLLTVS-LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420 (423)
Q Consensus 348 ~~~~~~~~~~~~~g~~l~~~~-~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~ 420 (423)
.-.....+++.+.++.|..+. ..+.|...++...... ....+.......++... +.++.+-.....|..-|
T Consensus 475 ~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~-~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~ 546 (628)
T 4a0p_A 475 GLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRI-VLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKID 546 (628)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred cCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceE-EEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEE
Confidence 111234456666666766554 4567888887543322 12223334456777765 45555555555555444
No 303
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.92 E-value=0.24 Score=45.35 Aligned_cols=274 Identities=12% Similarity=0.146 Sum_probs=148.1
Q ss_pred cceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCe
Q psy13076 25 SGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKN 104 (423)
Q Consensus 25 dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (423)
+..+-+.|+.++..+.+.-.. --+.-.+|..+.+|--+ ..++.++|++++..++...-.. ..+.+.|-.+ ..
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e--~VvfWkWis~-~~ 118 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD--DVTFWKWISL-NT 118 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS--CCCEEEEEET-TE
T ss_pred CCeEEEEECCCCCcceecccc----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC--CceEEEecCC-Ce
Confidence 348889999987776542222 22566788888776654 5899999999987666553222 2333333322 34
Q ss_pred EEEecCCeEEEEecCC-CcccccccCCc----ceEEEEEECCCCCEEEEEc-------cCCcEEEEEcCCCceeEEeeec
Q psy13076 105 FLYTNGNSVIIRNIEN-PAISDIYTEHS----CAVNVAKYSPSGFYIASGD-------ISGKVRIWDTVNKEHILKNEFH 172 (423)
Q Consensus 105 ~~~~~~~~~~i~~~~~-~~~~~~~~~h~----~~i~~~~~sp~~~~l~s~~-------~d~~i~vwd~~~~~~~~~~~~~ 172 (423)
+..-.+..+..|++++ ....++|..|. ..|..-+.+++.+.++-.+ ..|.+.+|..+.+.... ..
T Consensus 119 l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~---ie 195 (494)
T 1bpo_A 119 VALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP---IE 195 (494)
T ss_dssp EEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEE---EC
T ss_pred EEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccch---he
Confidence 4455678899999974 45566676664 5777788899999887543 24778899987654221 11
Q ss_pred CCCCCeeEEEECC--CCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC
Q psy13076 173 PIGGPIKDIAWSP--DNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP 250 (423)
Q Consensus 173 ~~~~~v~~v~~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~ 250 (423)
++.+....+.... ....+++.+.....-+.+...+.+.. |.+.- .-.-+.+-+
T Consensus 196 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~-----------------~~~~~----~f~kk~vdv---- 250 (494)
T 1bpo_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP-----------------PTGNQ----PFPKKAVDV---- 250 (494)
T ss_dssp CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCC-----------------CTTCC----CCCCEEEEC----
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCC-----------------ccCCC----Cccceeeee----
Confidence 2111111111111 11112221111000001111110000 00000 000000111
Q ss_pred CceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcE
Q psy13076 251 PFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTC 330 (423)
Q Consensus 251 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i 330 (423)
....+...++..++..++.-..+..-+.-|.|.++|+.++..+..-.. ....|..-+-+....=++.....|.|
T Consensus 251 ----~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI--s~~~iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 251 ----FFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI--SGETIFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp ----CCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred ----eCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecc--cCCceEEecccCCCCcEEEEccCceE
Confidence 112234456677899999988898999999999999999988755432 23445444444443444444566666
Q ss_pred EEEecCCcce
Q psy13076 331 KLWDIETKSA 340 (423)
Q Consensus 331 ~iwd~~~~~~ 340 (423)
.--.+.....
T Consensus 325 l~v~v~e~~i 334 (494)
T 1bpo_A 325 LSVCVEEENI 334 (494)
T ss_dssp EEEEECTTTH
T ss_pred EEEEEccccc
Confidence 5555544433
No 304
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.80 E-value=0.26 Score=43.92 Aligned_cols=181 Identities=15% Similarity=0.143 Sum_probs=100.7
Q ss_pred EEEeecCCcceecccCCCcceeEEEEecCCC-------eeEEEEeC--CCeEEEEcCC--Cceeeeecc------ccccC
Q psy13076 202 HVFMSETGTSVGEISGQSKPINSCDFKPSRP-------FRIITGSE--DNTIAVFEGP--PFKFKMTKQ------EHSRF 264 (423)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~s~s~--d~~i~~~~~~--~~~~~~~~~------~~~~~ 264 (423)
.+++. .++.+..+.. ..++.++..|.-. ..+++... ++++.+|+.. ..++..... .....
T Consensus 53 ~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~ 129 (355)
T 3amr_A 53 VVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINE 129 (355)
T ss_dssp EEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSS
T ss_pred EEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCC
Confidence 34444 6666666643 3456666655311 22344444 5889999652 222221100 11134
Q ss_pred eEEEEE--CCC-CC-EEEEEEecCeEEEEECC-------CccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEE
Q psy13076 265 VQAVRY--SPS-GS-HFASAGFDGKVFLYDGA-------SADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLW 333 (423)
Q Consensus 265 i~~l~~--s~~-g~-~l~s~s~dg~i~vwd~~-------~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iw 333 (423)
+..+++ +|. ++ |++....+|.+..|++. +.+.+.++.. .+.+..++.++....|..+-.+.-|-.+
T Consensus 130 pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~EgcvvDd~~g~Lyv~eEd~GIw~~ 206 (355)
T 3amr_A 130 VYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGMAADDEYGRLYIAEEDEAIWKF 206 (355)
T ss_dssp CCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred eeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceEEEcCCCCeEEEecccceEEEE
Confidence 555666 775 54 67778889999998873 2344555542 3568899999988899999888666555
Q ss_pred ecC-----CcceeeeeeeC---ceeEeeEEEEEecCc-EEEEEe-CCCcEEEEecCCCCCceEEe
Q psy13076 334 DIE-----TKSAVSEFLMG---NQVEDQQVSCLWQGD-YLLTVS-LSGFISYLDVNNPSTPIRVI 388 (423)
Q Consensus 334 d~~-----~~~~i~~~~~~---~~~~~~~~~~~~~g~-~l~~~~-~~~~i~~~~~~~~~~~~~~~ 388 (423)
+.. +.+.+...... ...+...+-...+|+ +|++.+ .+....+|+.+.....+..+
T Consensus 207 da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 207 SAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp ECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred eCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 644 23344333222 122222222223455 666666 46688999986433333333
No 305
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.76 E-value=0.094 Score=47.16 Aligned_cols=137 Identities=17% Similarity=0.185 Sum_probs=77.9
Q ss_pred ecCeEEEEECCCcc-ceecccccc-----cCCCeEEEEECC--CCC--eEEEEeC--CCcEEEEecCCcce----eeeee
Q psy13076 282 FDGKVFLYDGASAD-LVSELGNPA-----HKGGVYAVAWKP--DGT--QLLTASG--DKTCKLWDIETKSA----VSEFL 345 (423)
Q Consensus 282 ~dg~i~vwd~~~~~-~~~~~~~~~-----~~~~i~~l~~~~--~~~--~l~s~s~--d~~i~iwd~~~~~~----i~~~~ 345 (423)
.+|.|.++|.++.. ...++.... .......+.+.+ ++. ++++... +.+|.+|++..... +.++.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 68999999987421 122332211 233566777755 453 4444333 46788887754322 22222
Q ss_pred eCceeEeeEEEEEecCcEEEEEe-----------------CCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEE
Q psy13076 346 MGNQVEDQQVSCLWQGDYLLTVS-----------------LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVF 408 (423)
Q Consensus 346 ~~~~~~~~~~~~~~~g~~l~~~~-----------------~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~ 408 (423)
...-.....+.+.++|.+.++.. ..|.++.++.. . ++.+...-..-+.++||||++.|.
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~---~-~~~~~~~l~~pNGia~spDg~~lY 236 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN---D-VRVVAEGFDFANGINISPDGKYVY 236 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT---C-CEEEEEEESSEEEEEECTTSSEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC---e-EEEeecCCcccCcceECCCCCEEE
Confidence 21122345566777888877654 12456666542 2 233333335678999999998765
Q ss_pred -EecCCCcEEEeeCC
Q psy13076 409 -TGSHDGFITRWNAK 422 (423)
Q Consensus 409 -s~s~D~~i~~W~~~ 422 (423)
+-+..+.|..|++.
T Consensus 237 vadt~~~~I~~~~~~ 251 (355)
T 3sre_A 237 IAELLAHKIHVYEKH 251 (355)
T ss_dssp EEEGGGTEEEEEEEC
T ss_pred EEeCCCCeEEEEEEC
Confidence 45567888888753
No 306
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.69 E-value=0.62 Score=49.31 Aligned_cols=131 Identities=13% Similarity=0.210 Sum_probs=85.3
Q ss_pred cceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCe
Q psy13076 25 SGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKN 104 (423)
Q Consensus 25 dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (423)
+..|-+.|+.+|..+.+.-.. --+.-.+|..+.+|--+ ..++.|+|++++..++...-. ...+.+.|-... .
T Consensus 47 ~~~vvIidl~~~~~~~rrpi~----AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~--e~VvfWkWis~~-~ 118 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT--DDVTFWKWISLN-T 118 (1630)
T ss_pred CceEEEEECCCCCCccccccc----chhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccC--CCceEEEecCCC-e
Confidence 348889999887766432211 12455678777766654 689999999987655544321 223344444333 3
Q ss_pred EEEecCCeEEEEecCC-CcccccccCC----cceEEEEEECCCCCEEEEEc-------cCCcEEEEEcCCC
Q psy13076 105 FLYTNGNSVIIRNIEN-PAISDIYTEH----SCAVNVAKYSPSGFYIASGD-------ISGKVRIWDTVNK 163 (423)
Q Consensus 105 ~~~~~~~~~~i~~~~~-~~~~~~~~~h----~~~i~~~~~sp~~~~l~s~~-------~d~~i~vwd~~~~ 163 (423)
+..-++..+..|++++ ....++|..| ...|..-+.+++.+.++-.+ ..|.+.+|..+.+
T Consensus 119 l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~ 189 (1630)
T 1xi4_A 119 VALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK 189 (1630)
T ss_pred eEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc
Confidence 4445677899999973 4566777777 45677778888888877433 3578889887654
No 307
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.47 E-value=0.46 Score=42.70 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=33.5
Q ss_pred ecCcEEEEEeCCCcEEEEecCCCCCc-----eEEeccCCCceeEEEecCCCCeEEEec
Q psy13076 359 WQGDYLLTVSLSGFISYLDVNNPSTP-----IRVIKGHNKPITALALSPDRGTVFTGS 411 (423)
Q Consensus 359 ~~g~~l~~~~~~~~i~~~~~~~~~~~-----~~~~~~h~~~v~~i~~sp~~~~l~s~s 411 (423)
++|..+++.-..+.|...+....... ...+..-...++++++.||+.++++..
T Consensus 276 ~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 276 FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 57776666666677877776543321 122212235789999999998877653
No 308
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.43 E-value=0.46 Score=43.42 Aligned_cols=138 Identities=14% Similarity=0.210 Sum_probs=83.1
Q ss_pred eCCCCeEEEecCCCceEEeecCCcceeecccCC---CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcc-c-------
Q psy13076 56 SPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT---QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAI-S------- 124 (423)
Q Consensus 56 ~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~------- 124 (423)
+.++..++.+ .++.||.=++..+.-++.+... ......-+.-+|+|.+++..+...+.|-.+..+.. .
T Consensus 29 ~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 29 SQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp ETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHH
T ss_pred EcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccc
Confidence 3455555444 3366776666533223333222 12233346678999999988888888776652210 0
Q ss_pred ----cccc------CCcceEEEEEECCC---CCEEEEEccCCcEEEEEcCCCce--e-EE-----eeecCCCCCeeEEEE
Q psy13076 125 ----DIYT------EHSCAVNVAKYSPS---GFYIASGDISGKVRIWDTVNKEH--I-LK-----NEFHPIGGPIKDIAW 183 (423)
Q Consensus 125 ----~~~~------~h~~~i~~~~~sp~---~~~l~s~~~d~~i~vwd~~~~~~--~-~~-----~~~~~~~~~v~~v~~ 183 (423)
+.+. ....+|..+.|||- +..|++-..|++||+||+..... . ++ .........|.+++|
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEE
Confidence 0111 12467999999994 56899999999999999875221 1 11 111122257889999
Q ss_pred CCCCCeEEEEE
Q psy13076 184 SPDNQRMVVVG 194 (423)
Q Consensus 184 s~~~~~~~~~~ 194 (423)
.+++-.+.+..
T Consensus 188 g~~~lTLYvl~ 198 (452)
T 3pbp_A 188 SKDGLTLYCLN 198 (452)
T ss_dssp CTTSSCEEEEE
T ss_pred cCCCcEEEEEe
Confidence 99877776655
No 309
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.32 E-value=0.57 Score=42.07 Aligned_cols=192 Identities=19% Similarity=0.198 Sum_probs=103.8
Q ss_pred EEECCCCCEEEEE------------ccCCcEEEEEcCCCc-eeEEeeecC-----CCCCeeEEEECC--CCC-eEEEEEc
Q psy13076 137 AKYSPSGFYIASG------------DISGKVRIWDTVNKE-HILKNEFHP-----IGGPIKDIAWSP--DNQ-RMVVVGE 195 (423)
Q Consensus 137 ~~~sp~~~~l~s~------------~~d~~i~vwd~~~~~-~~~~~~~~~-----~~~~v~~v~~s~--~~~-~~~~~~~ 195 (423)
+...|+|..++++ ..+|.|.++|..+.. ......... .......+.+.+ ++. +++++..
T Consensus 55 i~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh 134 (355)
T 3sre_A 55 LEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNH 134 (355)
T ss_dssp EEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEEC
T ss_pred eEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEEC
Confidence 4457777666665 268999999987431 111112211 112345566654 444 5666655
Q ss_pred CC-ceeeEEEeecCCc-c---eecccC-CCcceeEEEEecCCCeeEEEEe-----------------CCCeEEEEcCCCc
Q psy13076 196 GR-ERFGHVFMSETGT-S---VGEISG-QSKPINSCDFKPSRPFRIITGS-----------------EDNTIAVFEGPPF 252 (423)
Q Consensus 196 ~~-~~~~~~~~~~~~~-~---~~~~~~-~~~~i~~~~~~~~~~~~~~s~s-----------------~d~~i~~~~~~~~ 252 (423)
.. .....++..+... . +..+.+ .....+.+.+.+++.+ .++.. ..+.+.-++..
T Consensus 135 ~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~f-yvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~-- 211 (355)
T 3sre_A 135 PGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHF-YATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN-- 211 (355)
T ss_dssp STTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEE-EEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--
T ss_pred CCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCE-EecCCcEeCCcccccchhhccCCccEEEEEECC--
Confidence 53 2334455544432 1 122222 2345778888888764 23322 12445555532
Q ss_pred eeeeeccccccCeEEEEECCCCCEEEEEE-ecCeEEEEECCC-ccce--ecccccccCCCeEEEEECC-CCCeEEEEeCC
Q psy13076 253 KFKMTKQEHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGAS-ADLV--SELGNPAHKGGVYAVAWKP-DGTQLLTASGD 327 (423)
Q Consensus 253 ~~~~~~~~~~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~-~~~~--~~~~~~~~~~~i~~l~~~~-~~~~l~s~s~d 327 (423)
+... ....-...+.++|+|||+.+..+. ..+.|..|+... ++.. ..+. ..+....+++++ +|++.+++..+
T Consensus 212 ~~~~-~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 212 DVRV-VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp CCEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCCEEEEEESC
T ss_pred eEEE-eecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCCcEEEEecCC
Confidence 2111 122234568899999998776655 578999999753 3221 1221 235578899999 59988877654
Q ss_pred C-cEEEEec
Q psy13076 328 K-TCKLWDI 335 (423)
Q Consensus 328 ~-~i~iwd~ 335 (423)
+ .|..||.
T Consensus 288 g~~v~~~~P 296 (355)
T 3sre_A 288 GMRIFFYDA 296 (355)
T ss_dssp HHHHHSCCT
T ss_pred ceEEEEECC
Confidence 3 4444443
No 310
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.07 E-value=1.2 Score=43.53 Aligned_cols=380 Identities=11% Similarity=0.039 Sum_probs=188.8
Q ss_pred CEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCC-eEEEecCCCceEEeecCCcceeecccCCCCCCceE
Q psy13076 17 DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIV 95 (423)
Q Consensus 17 ~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~-~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~ 95 (423)
.+|+.+ ..+.|+..|++..........+.-+.+..|+|.+.+. +.++-..++.|+.++.+.......+.. ....+.-
T Consensus 7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~-g~~~P~G 84 (628)
T 4a0p_A 7 AFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF-GLDYPEG 84 (628)
T ss_dssp CEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-SCSCCCE
T ss_pred cEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC-CCCCcce
Confidence 356654 5679999999753322211122234677999998655 456667789999998876433222211 1123334
Q ss_pred EeeCCCCCeEEEec--CCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEcc--CCcEEEEEcCCCceeEEeee
Q psy13076 96 LGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI--SGKVRIWDTVNKEHILKNEF 171 (423)
Q Consensus 96 ~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~ 171 (423)
++.++.++.+.++. ...+.+.+++...........-.....+++.|...+|.-.+. .+.|...++........ .
T Consensus 85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l--~ 162 (628)
T 4a0p_A 85 MAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL--V 162 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE--E
T ss_pred EEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE--E
Confidence 55565555544443 457777777654332233234456789999996555555543 46777777654332111 1
Q ss_pred cCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC
Q psy13076 172 HPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP 251 (423)
Q Consensus 172 ~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~ 251 (423)
. .-.....|+++++++.|..+-...... .....+.... ..+.........+++.. ..+.++-...+.|...+...
T Consensus 163 ~-~~~~P~GlalD~~~~~LY~aD~~~~~I-~~~d~dG~~~-~v~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~t 237 (628)
T 4a0p_A 163 P-NVGRANGLTIDYAKRRLYWTDLDTNLI-ESSNMLGLNR-EVIADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTS 237 (628)
T ss_dssp C-SCSSEEEEEEETTTTEEEEEETTTTEE-EEEETTSCSC-EEEEECCSCEEEEEEET--TEEEEEETTTTEEEEEETTT
T ss_pred C-CCCCcceEEEccccCEEEEEECCCCEE-EEEcCCCCce-EEeeccCCCceEEEEEC--CEEEEecCCCCEEEEEECCC
Confidence 1 123467899999888777765544332 2333332221 22222333344566554 23344444456666665211
Q ss_pred ce---eee----------ecc------cc-----ccCe--EE--------EEECC-------CC-------CEEEEEEec
Q psy13076 252 FK---FKM----------TKQ------EH-----SRFV--QA--------VRYSP-------SG-------SHFASAGFD 283 (423)
Q Consensus 252 ~~---~~~----------~~~------~~-----~~~i--~~--------l~~s~-------~g-------~~l~s~s~d 283 (423)
.+ ... ... .. ...- .| -+..| ++ .+|+.+ ..
T Consensus 238 g~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s-~~ 316 (628)
T 4a0p_A 238 GQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFS-QK 316 (628)
T ss_dssp CCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEE-ET
T ss_pred CCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeee-cc
Confidence 10 000 000 00 0000 01 11112 22 122222 12
Q ss_pred CeEEEEECCCccce-ecccccccCCCeEEEEECCCCCeEEEE-eCCCcEEEEecCCcceeeeeeeC------ceeEeeEE
Q psy13076 284 GKVFLYDGASADLV-SELGNPAHKGGVYAVAWKPDGTQLLTA-SGDKTCKLWDIETKSAVSEFLMG------NQVEDQQV 355 (423)
Q Consensus 284 g~i~vwd~~~~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~s~-s~d~~i~iwd~~~~~~i~~~~~~------~~~~~~~~ 355 (423)
..|+-..+...... ..+.. .....+.+++|++.+..|.-+ ...+.|+.++...... .++... .-.....+
T Consensus 317 ~~i~~i~l~~~~~~~~~l~~-~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~-~~v~~~~~~~~~~~~~p~gl 394 (628)
T 4a0p_A 317 SAINRMVIDEQQSPDIILPI-HSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG-FTVVVSSVPSQNLEIQPYDL 394 (628)
T ss_dssp TEEEEECCCTTCCCCEECCC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC--------CCCEEEE
T ss_pred ceEEEEecccccCceEEEEe-hhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCc-eEEEEcccccccccCCcceE
Confidence 33333333221110 01111 112457789999866655544 4467788887754321 122111 01123456
Q ss_pred EEEecCcEEE-EEeCCCcEEEEecCCCCCceEE-eccCCCceeEEEecCC-CCeEEEe
Q psy13076 356 SCLWQGDYLL-TVSLSGFISYLDVNNPSTPIRV-IKGHNKPITALALSPD-RGTVFTG 410 (423)
Q Consensus 356 ~~~~~g~~l~-~~~~~~~i~~~~~~~~~~~~~~-~~~h~~~v~~i~~sp~-~~~l~s~ 410 (423)
++.|.+..|. +-+..+.|.+.+.... .... +.......++|++.|. +.++.|-
T Consensus 395 AvD~~~~nLY~td~~~~~I~v~~~~G~--~~~~l~~~~l~~Pr~iavdp~~g~ly~tD 450 (628)
T 4a0p_A 395 SIDIYSRYIYWTCEATNVINVTRLDGR--SVGVVLKGEQDRPRAVVVNPEKGYMYFTN 450 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSC--EEEEEEECTTCCEEEEEEETTTTEEEEEE
T ss_pred EeeccCCeEEEEcCCCCEEEEEECCCC--eEEEEEeCCCCceeeEEEecCCCeEEEee
Confidence 6667666554 4455667777776532 2222 2334456899999994 4444553
No 311
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.03 E-value=0.8 Score=41.16 Aligned_cols=99 Identities=15% Similarity=0.186 Sum_probs=55.3
Q ss_pred CceeEEEEeCCCCeEEEecCCCceEEeecCCcc-eeeccc--CCCCCCceEEeeCCC----CCeEEEecC--------Ce
Q psy13076 48 KPITALALSPDRGTVFTGSHDGFITRWNAKTEY-IFATLP--RTQRGQPIVLGGDPK----GKNFLYTNG--------NS 112 (423)
Q Consensus 48 ~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~-~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~--------~~ 112 (423)
..-..++|.|+++++++- .++.|++++. ++. .+..+. ......+.-+..+|+ +.++++... +.
T Consensus 29 ~~P~~ia~~pdG~l~V~e-~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTE-RPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEEEE-TTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEEEe-CCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 345689999999866654 5599999974 333 222221 111233455677776 555555432 45
Q ss_pred EEEEecCCC--cc------ccccc---CCcceEEEEEECCCCCEEEEEc
Q psy13076 113 VIIRNIENP--AI------SDIYT---EHSCAVNVAKYSPSGFYIASGD 150 (423)
Q Consensus 113 ~~i~~~~~~--~~------~~~~~---~h~~~i~~~~~sp~~~~l~s~~ 150 (423)
+..++.+.. .+ ...+. .|. ...+.|.|||.+.++-+
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEECC
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEEC
Confidence 555555433 11 11111 232 35689999998777643
No 312
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.92 E-value=0.56 Score=38.72 Aligned_cols=143 Identities=10% Similarity=0.025 Sum_probs=75.1
Q ss_pred cCeEEEEECCCCCEEEEEEecCeEEEEECCCccce------ecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecC
Q psy13076 263 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLV------SELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIE 336 (423)
Q Consensus 263 ~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~------~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~ 336 (423)
..+..++|+|+|.+.+. .+|.++-.+..+.... ..+...+-+. -.++.|+|+|.+.++ .|+.|.-++..
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 35779999999987766 7888877776542211 1111111111 367899999998887 56988877764
Q ss_pred CcceeeeeeeCcee------EeeEEEEEecCcEEEEEeCCCcEEEEecCCCC------CceEEeccCCCceeEEEecCCC
Q psy13076 337 TKSAVSEFLMGNQV------EDQQVSCLWQGDYLLTVSLSGFISYLDVNNPS------TPIRVIKGHNKPITALALSPDR 404 (423)
Q Consensus 337 ~~~~i~~~~~~~~~------~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~------~~~~~~~~h~~~v~~i~~sp~~ 404 (423)
+...-.-......+ ....+.+.++|...++. ++.++........ .......+....-+-+.|.|++
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 32211000000010 11223334455544444 7776443222111 0011111333344557799999
Q ss_pred CeEEEecCCC
Q psy13076 405 GTVFTGSHDG 414 (423)
Q Consensus 405 ~~l~s~s~D~ 414 (423)
.+.+.. ++
T Consensus 194 ~l~~v~--~g 201 (236)
T 1tl2_A 194 TLFGVQ--GG 201 (236)
T ss_dssp CEEEEE--TT
T ss_pred cEEEEe--CC
Confidence 877655 55
No 313
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.40 E-value=1.4 Score=39.49 Aligned_cols=230 Identities=10% Similarity=0.071 Sum_probs=110.1
Q ss_pred ceEEeeCCCCCeEEEecCCeEEEEecCCCc-ccc---cccCCcceEEEEEECCC---CCEEEEEcc----C----CcEEE
Q psy13076 93 PIVLGGDPKGKNFLYTNGNSVIIRNIENPA-ISD---IYTEHSCAVNVAKYSPS---GFYIASGDI----S----GKVRI 157 (423)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~---~~~~h~~~i~~~~~sp~---~~~l~s~~~----d----~~i~v 157 (423)
+..+.++|+|..++......+.+.+. ++. ... ++..-......++++|+ +..|..+.. + ..|..
T Consensus 31 P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r 109 (354)
T 3a9g_A 31 PWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIR 109 (354)
T ss_dssp EEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEE
T ss_pred CeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEE
Confidence 44556667777666655566666542 332 111 11122345788999997 444444332 2 45666
Q ss_pred EEcCCCc------eeEEeeecC-CCCCeeEEEECCCCCeEEEEEcCCc---------eeeEEEeecC-Cc--------ce
Q psy13076 158 WDTVNKE------HILKNEFHP-IGGPIKDIAWSPDNQRMVVVGEGRE---------RFGHVFMSET-GT--------SV 212 (423)
Q Consensus 158 wd~~~~~------~~~~~~~~~-~~~~v~~v~~s~~~~~~~~~~~~~~---------~~~~~~~~~~-~~--------~~ 212 (423)
++..... ......+.. .......++|.|||...++.++... ..+.++..+. +. ..
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~ 189 (354)
T 3a9g_A 110 GRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNS 189 (354)
T ss_dssp EEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTC
T ss_pred EEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCC
Confidence 7655431 111111111 1112467999999986665543211 1123332221 11 00
Q ss_pred ecccCCCcceeEEEEec-CCCeeEEEEeC-CC--eEEEEcCCC---------------c-eeeeeccccccCeEEEEEC-
Q psy13076 213 GEISGQSKPINSCDFKP-SRPFRIITGSE-DN--TIAVFEGPP---------------F-KFKMTKQEHSRFVQAVRYS- 271 (423)
Q Consensus 213 ~~~~~~~~~i~~~~~~~-~~~~~~~s~s~-d~--~i~~~~~~~---------------~-~~~~~~~~~~~~i~~l~~s- 271 (423)
..+..-.+....++|+| .+.. .++-.. +. .|.+..... + .....+.........++|-
T Consensus 190 ~i~a~G~rnp~Gla~d~~~g~l-~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~ 268 (354)
T 3a9g_A 190 PIWSYGHRNPQGIDWHRASGVM-VATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVH 268 (354)
T ss_dssp CEEEECCSCCCEEEECTTTCCE-EEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECC
T ss_pred cEEEEccCCcceEEEeCCCCCE-EEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEEC
Confidence 11111123456788888 4442 332221 11 233322100 0 0001110112245677773
Q ss_pred ------CCCCEEEEEEecCeEEEEECCCc-cce--ecccccccCCCeEEEEECCCCCeEEEEe
Q psy13076 272 ------PSGSHFASAGFDGKVFLYDGASA-DLV--SELGNPAHKGGVYAVAWKPDGTQLLTAS 325 (423)
Q Consensus 272 ------~~g~~l~s~s~dg~i~vwd~~~~-~~~--~~~~~~~~~~~i~~l~~~~~~~~l~s~s 325 (423)
.+|.++++.-..+.|...+.... +.. ..+. ......+.++++.|||.+.++..
T Consensus 269 g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 269 GDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-KNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp SSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-TTTSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-cCCCCCeeEEEECCCCcEEEEEe
Confidence 56766666556678888887643 221 1221 11235689999999998777653
No 314
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.14 E-value=1.9 Score=39.42 Aligned_cols=143 Identities=17% Similarity=0.241 Sum_probs=83.8
Q ss_pred CCCCEEEEEEecCeEEEEECCCccceecccccc--cCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcce---------
Q psy13076 272 PSGSHFASAGFDGKVFLYDGASADLVSELGNPA--HKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSA--------- 340 (423)
Q Consensus 272 ~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~--------- 340 (423)
.+|.-++.+ .++.||.-+.......+.+..+. --..+..+..+|+|++|+..+ +.+|.|-.+..+..
T Consensus 30 ~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 30 QNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHH
T ss_pred cCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccccc
Confidence 344444333 34566665555333333333221 123567899999999998875 56899998873221
Q ss_pred ---eeeeeeCcee---EeeEEEEEe-----cCcEEEEEeCCCcEEEEecCC-CCCceEEec---------cCCCceeEEE
Q psy13076 341 ---VSEFLMGNQV---EDQQVSCLW-----QGDYLLTVSLSGFISYLDVNN-PSTPIRVIK---------GHNKPITALA 399 (423)
Q Consensus 341 ---i~~~~~~~~~---~~~~~~~~~-----~g~~l~~~~~~~~i~~~~~~~-~~~~~~~~~---------~h~~~v~~i~ 399 (423)
.+.+..+... ...-..+.| .|..|++...|+.|++||+.. .+.|. .+. .....|.+++
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence 1233332110 111222333 578999999999999999985 33333 332 2336799999
Q ss_pred ecCCCCeEE--EecCCCcEE
Q psy13076 400 LSPDRGTVF--TGSHDGFIT 417 (423)
Q Consensus 400 ~sp~~~~l~--s~s~D~~i~ 417 (423)
|.+++-.|. +...+|-|+
T Consensus 187 Fg~~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEE
T ss_pred EcCCCcEEEEEecCCCCCEE
Confidence 999765444 455777664
No 315
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=94.75 E-value=1.9 Score=37.40 Aligned_cols=144 Identities=13% Similarity=0.111 Sum_probs=71.3
Q ss_pred CCCEEEEEEecC-----eEEEEECCCccc--eecccccccCCCeEEEEECCCCCeEEEEeCC-----CcEEEEecCCcce
Q psy13076 273 SGSHFASAGFDG-----KVFLYDGASADL--VSELGNPAHKGGVYAVAWKPDGTQLLTASGD-----KTCKLWDIETKSA 340 (423)
Q Consensus 273 ~g~~l~s~s~dg-----~i~vwd~~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d-----~~i~iwd~~~~~~ 340 (423)
+++.++.|+.++ .+.+||..+.+- +..+... ...-..+.+ +++.++.|+.+ ..+.+||+.+.+-
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W 187 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTA--REGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHW 187 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC--CBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCC--cccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcE
Confidence 567777776543 578888766442 2222111 111122222 67777777654 4588899877643
Q ss_pred eeeeeeCceeEeeEEEEEecCcEEEEEeCC-----CcEEEEecCCCCCceEEeccCC-CceeEEEecCCCCeEEEecCC-
Q psy13076 341 VSEFLMGNQVEDQQVSCLWQGDYLLTVSLS-----GFISYLDVNNPSTPIRVIKGHN-KPITALALSPDRGTVFTGSHD- 413 (423)
Q Consensus 341 i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~-----~~i~~~~~~~~~~~~~~~~~h~-~~v~~i~~sp~~~~l~s~s~D- 413 (423)
...-....+.. ....+..++..++.|..+ ..+..||..+..- . .+.... ......+..-++++++.||.+
T Consensus 188 ~~~~~~p~~r~-~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W-~-~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 264 (301)
T 2vpj_A 188 TNVTPMATKRS-GAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSW-T-TVTSMTTPRCYVGATVLRGRLYAIAGYDG 264 (301)
T ss_dssp EEECCCSSCCB-SCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE-E-EECCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred EeCCCCCcccc-cceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcE-E-ECCCCCCcccceeEEEECCEEEEEcCcCC
Confidence 22111111111 112223466666776653 4578888865321 1 111000 011111122267788888865
Q ss_pred ----CcEEEeeCCC
Q psy13076 414 ----GFITRWNAKT 423 (423)
Q Consensus 414 ----~~i~~W~~~~ 423 (423)
..+.+||+++
T Consensus 265 ~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 265 NSLLSSIECYDPII 278 (301)
T ss_dssp SSBEEEEEEEETTT
T ss_pred CcccccEEEEcCCC
Confidence 3566777653
No 316
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.70 E-value=2.2 Score=38.03 Aligned_cols=33 Identities=27% Similarity=0.236 Sum_probs=25.3
Q ss_pred cCceeEEEEeCCCCeEEEecCCCceEEeecCCc
Q psy13076 47 NKPITALALSPDRGTVFTGSHDGFITRWNAKTE 79 (423)
Q Consensus 47 ~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~ 79 (423)
-..-..++|.|+++++++--..|.|++++..++
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g 63 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTG 63 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCC
Confidence 345568999999998887766899988876544
No 317
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.67 E-value=1.1 Score=41.93 Aligned_cols=62 Identities=16% Similarity=0.306 Sum_probs=38.5
Q ss_pred CeEEEEECCCCCEEEEEEecCeEEEEECCCccc--eeccccc----ccCCCeEEEEECCC----CCeEEEEe
Q psy13076 264 FVQAVRYSPSGSHFASAGFDGKVFLYDGASADL--VSELGNP----AHKGGVYAVAWKPD----GTQLLTAS 325 (423)
Q Consensus 264 ~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~----~~~~~i~~l~~~~~----~~~l~s~s 325 (423)
....++|.|+|+++++-...+.|+.++..+++. +..+... ...+....|+|+|+ +.+.++-+
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s 99 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT 99 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence 356899999999777654445798887654432 2222211 12466789999994 44444443
No 318
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.49 E-value=2.2 Score=37.06 Aligned_cols=144 Identities=13% Similarity=0.137 Sum_probs=70.4
Q ss_pred CCCEEEEEEec------CeEEEEECCCccc--eecccccccCCCeEEEEECCCCCeEEEEeC---------CCcEEEEec
Q psy13076 273 SGSHFASAGFD------GKVFLYDGASADL--VSELGNPAHKGGVYAVAWKPDGTQLLTASG---------DKTCKLWDI 335 (423)
Q Consensus 273 ~g~~l~s~s~d------g~i~vwd~~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~---------d~~i~iwd~ 335 (423)
++++++.|+.+ ..+.+||..+.+- +..+... ...-..+.+ +++.++.|+. -..+.+||+
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~ 176 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQ--RCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDP 176 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSC--CBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEET
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCC--cceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCC
Confidence 66777778766 3588888776542 1112111 111122222 5666666653 345888998
Q ss_pred CCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCC-----CcEEEEecCCCCC-ceEEeccCCCceeEEEecCCCCeEEE
Q psy13076 336 ETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLS-----GFISYLDVNNPST-PIRVIKGHNKPITALALSPDRGTVFT 409 (423)
Q Consensus 336 ~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~-----~~i~~~~~~~~~~-~~~~~~~h~~~v~~i~~sp~~~~l~s 409 (423)
.+.+-...-....... ....+..++..++.|..+ ..+..||..+..- .+..+.........+.+ ++++++.
T Consensus 177 ~~~~W~~~~~~p~~r~-~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~ 253 (306)
T 3ii7_A 177 ATETWTELCPMIEARK-NHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVL 253 (306)
T ss_dssp TTTEEEEECCCSSCCB-SCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEE
T ss_pred CCCeEEECCCccchhh-cceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEE
Confidence 8764322111111111 112223366666666543 3577888765311 00001100111122222 6778888
Q ss_pred ecCC-----CcEEEeeCCC
Q psy13076 410 GSHD-----GFITRWNAKT 423 (423)
Q Consensus 410 ~s~D-----~~i~~W~~~~ 423 (423)
||.+ ..+.+||+++
T Consensus 254 GG~~~~~~~~~~~~yd~~~ 272 (306)
T 3ii7_A 254 AGFQGVGRLGHILEYNTET 272 (306)
T ss_dssp ECBCSSSBCCEEEEEETTT
T ss_pred eCcCCCeeeeeEEEEcCCC
Confidence 8854 4567777653
No 319
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.37 E-value=0.53 Score=38.82 Aligned_cols=103 Identities=10% Similarity=-0.081 Sum_probs=57.4
Q ss_pred CeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeC-ceeE------eeEEEEEecCcEEEEEeCCCcEEEEecCC
Q psy13076 308 GVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMG-NQVE------DQQVSCLWQGDYLLTVSLSGFISYLDVNN 380 (423)
Q Consensus 308 ~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~-~~~~------~~~~~~~~~g~~l~~~~~~~~i~~~~~~~ 380 (423)
.+..++|+|+|.+.+. .++.+.-.+..+.... .+... ..+. -..+.+.++|...++ .+|.|+.++-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND-NWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC-CHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcc-cccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 4679999999987666 6777666565442111 01000 0010 122333345555555 669998887533
Q ss_pred CCCc------eEEeccCCCceeEEEecCCCCeEEEecCCCcEE
Q psy13076 381 PSTP------IRVIKGHNKPITALALSPDRGTVFTGSHDGFIT 417 (423)
Q Consensus 381 ~~~~------~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~ 417 (423)
.... .++..+-=+.+..|.|.|++.+.+.. |+.++
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 2211 11112112468999999999888766 66553
No 320
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.03 E-value=2.7 Score=36.36 Aligned_cols=144 Identities=17% Similarity=0.143 Sum_probs=71.1
Q ss_pred CCCEEEEEEecC-----eEEEEECCCccc--eecccccccCCCeEEEEECCCCCeEEEEeCC-------CcEEEEecCCc
Q psy13076 273 SGSHFASAGFDG-----KVFLYDGASADL--VSELGNPAHKGGVYAVAWKPDGTQLLTASGD-------KTCKLWDIETK 338 (423)
Q Consensus 273 ~g~~l~s~s~dg-----~i~vwd~~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d-------~~i~iwd~~~~ 338 (423)
+++.++.|+.++ .+.+||..+.+- +..+.. .......+.+ +++.++.|+.+ ..+.+||+.+.
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~ 183 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNT--RRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTN 183 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSS--CCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTT
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCC--cccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCC
Confidence 567777787654 577888766542 112211 1111122222 56666666542 35888998776
Q ss_pred ceeeeeeeCceeEeeEEEEEecCcEEEEEeCC-----CcEEEEecCCCCCceEEeccCCCc-eeEEEecCCCCeEEEecC
Q psy13076 339 SAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLS-----GFISYLDVNNPSTPIRVIKGHNKP-ITALALSPDRGTVFTGSH 412 (423)
Q Consensus 339 ~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~-----~~i~~~~~~~~~~~~~~~~~h~~~-v~~i~~sp~~~~l~s~s~ 412 (423)
+-...-........ ...+..++..++.|..+ ..+..||..+..- ..+.....+ -..-+...++++++.||.
T Consensus 184 ~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W--~~~~~~~~~r~~~~~~~~~~~i~v~GG~ 260 (302)
T 2xn4_A 184 EWTYIAEMSTRRSG-AGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAW--RQVADMNMCRRNAGVCAVNGLLYVVGGD 260 (302)
T ss_dssp EEEEECCCSSCCBS-CEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEE--EEECCCSSCCBSCEEEEETTEEEEECCB
T ss_pred cEEECCCCcccccc-ccEEEECCEEEEECCCCCCcccceEEEEeCCCCCE--eeCCCCCCccccCeEEEECCEEEEECCc
Confidence 43221111111111 12233467777777653 3578888765321 111111000 011111236778888886
Q ss_pred CC-----cEEEeeCCC
Q psy13076 413 DG-----FITRWNAKT 423 (423)
Q Consensus 413 D~-----~i~~W~~~~ 423 (423)
++ .+.+||+++
T Consensus 261 ~~~~~~~~v~~yd~~~ 276 (302)
T 2xn4_A 261 DGSCNLASVEYYNPTT 276 (302)
T ss_dssp CSSSBCCCEEEEETTT
T ss_pred CCCcccccEEEEcCCC
Confidence 64 478888753
No 321
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=93.62 E-value=3.3 Score=35.99 Aligned_cols=143 Identities=13% Similarity=0.138 Sum_probs=70.8
Q ss_pred CCCEEEEEEecC-----eEEEEECCCccce--ecccccccCCCeEEEEECCCCCeEEEEeCC-----CcEEEEecCCcce
Q psy13076 273 SGSHFASAGFDG-----KVFLYDGASADLV--SELGNPAHKGGVYAVAWKPDGTQLLTASGD-----KTCKLWDIETKSA 340 (423)
Q Consensus 273 ~g~~l~s~s~dg-----~i~vwd~~~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d-----~~i~iwd~~~~~~ 340 (423)
+++.++.|+.++ .+.+||..+.+-. ..+.. ....-..+.+ +++.++.|+.+ ..+.+||+.+.+-
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 196 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLT--RRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEW 196 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSS--CCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCc--cccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeE
Confidence 667777777553 5778887665421 11211 1111122333 56777777654 4588899876643
Q ss_pred eeeeeeCceeEeeEEEEEecCcEEEEEeCC-----CcEEEEecCCCCCceEEeccCC--CceeEEEecCCCCeEEEecCC
Q psy13076 341 VSEFLMGNQVEDQQVSCLWQGDYLLTVSLS-----GFISYLDVNNPSTPIRVIKGHN--KPITALALSPDRGTVFTGSHD 413 (423)
Q Consensus 341 i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~-----~~i~~~~~~~~~~~~~~~~~h~--~~v~~i~~sp~~~~l~s~s~D 413 (423)
...-....+.... ..+..++..++.|..+ ..+..||..+..- ..+.... ..-.+++. -++++++.||.+
T Consensus 197 ~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W--~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~ 272 (308)
T 1zgk_A 197 RMITAMNTIRSGA-GVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW--TFVAPMKHRRSALGITV-HQGRIYVLGGYD 272 (308)
T ss_dssp EECCCCSSCCBSC-EEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE--EECCCCSSCCBSCEEEE-ETTEEEEECCBC
T ss_pred eeCCCCCCccccc-eEEEECCEEEEEeCCCCCCccceEEEEeCCCCcE--EECCCCCCCccceEEEE-ECCEEEEEcCcC
Confidence 2211111111111 1223366666777554 4578888765311 1111000 00112222 267788888854
Q ss_pred C-----cEEEeeCCC
Q psy13076 414 G-----FITRWNAKT 423 (423)
Q Consensus 414 ~-----~i~~W~~~~ 423 (423)
+ .+.+||+++
T Consensus 273 ~~~~~~~v~~yd~~~ 287 (308)
T 1zgk_A 273 GHTFLDSVECYDPDT 287 (308)
T ss_dssp SSCBCCEEEEEETTT
T ss_pred CCcccceEEEEcCCC
Confidence 3 466777653
No 322
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=92.77 E-value=4.5 Score=35.11 Aligned_cols=143 Identities=11% Similarity=0.094 Sum_probs=69.1
Q ss_pred CCCEEEEEEe----c-----CeEEEEECCCccc--eecccccccCCCeEEEEECCCCCeEEEEeCC-----CcEEEEecC
Q psy13076 273 SGSHFASAGF----D-----GKVFLYDGASADL--VSELGNPAHKGGVYAVAWKPDGTQLLTASGD-----KTCKLWDIE 336 (423)
Q Consensus 273 ~g~~l~s~s~----d-----g~i~vwd~~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d-----~~i~iwd~~ 336 (423)
++++++.|+. + ..+.+||..+.+- +..+... ...-..+.+ +++.++.|+.+ ..+.+||+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 145 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVP--RNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPE 145 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSC--CBTCEEEEE--TTEEEEECCEETTEECCCEEEEETT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcC--ccccEEEEE--CCEEEEEcCCCCCcccccEEEECCC
Confidence 5666677665 2 3578888766542 1112111 111122333 56677776643 358889987
Q ss_pred CcceeeeeeeCceeEeeEEEEEecCcEEEEEeCC-----CcEEEEecCCCCCceEEecc--CCCceeEEEecCCCCeEEE
Q psy13076 337 TKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLS-----GFISYLDVNNPSTPIRVIKG--HNKPITALALSPDRGTVFT 409 (423)
Q Consensus 337 ~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~-----~~i~~~~~~~~~~~~~~~~~--h~~~v~~i~~sp~~~~l~s 409 (423)
+.+-...-........ ...+..++..++.|..+ ..+..||..+..- ..+.. ....-.+++.. ++++++.
T Consensus 146 ~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W--~~~~~~p~~r~~~~~~~~-~~~iyv~ 221 (308)
T 1zgk_A 146 RDEWHLVAPMLTRRIG-VGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEW--RMITAMNTIRSGAGVCVL-HNCIYAA 221 (308)
T ss_dssp TTEEEECCCCSSCCBS-CEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEE--EECCCCSSCCBSCEEEEE-TTEEEEE
T ss_pred CCeEeECCCCCccccc-eEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeE--eeCCCCCCccccceEEEE-CCEEEEE
Confidence 7543221111111111 11223366666776543 3577888765311 11100 00011112222 6778888
Q ss_pred ecCC-----CcEEEeeCCC
Q psy13076 410 GSHD-----GFITRWNAKT 423 (423)
Q Consensus 410 ~s~D-----~~i~~W~~~~ 423 (423)
||.+ ..+.+||+++
T Consensus 222 GG~~~~~~~~~v~~yd~~~ 240 (308)
T 1zgk_A 222 GGYDGQDQLNSVERYDVET 240 (308)
T ss_dssp CCBCSSSBCCCEEEEETTT
T ss_pred eCCCCCCccceEEEEeCCC
Confidence 8765 4577787653
No 323
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=92.08 E-value=6.3 Score=35.17 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=36.6
Q ss_pred CeEEEEECC-------CCCEEEEEEecCeEEEEECCCccceeccc-ccccCCCeEEEEECCCCCeEEEE
Q psy13076 264 FVQAVRYSP-------SGSHFASAGFDGKVFLYDGASADLVSELG-NPAHKGGVYAVAWKPDGTQLLTA 324 (423)
Q Consensus 264 ~i~~l~~s~-------~g~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~i~~l~~~~~~~~l~s~ 324 (423)
.+..++|.+ +|.++++.-..+.|...++..++...... .......+.++++.|||.+.++.
T Consensus 272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence 355666653 46666665567777777766543222111 01123478999999999876653
No 324
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=92.08 E-value=6.2 Score=35.12 Aligned_cols=139 Identities=17% Similarity=0.152 Sum_probs=73.8
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccCCCC-ceeec----ccccCceeEEEEeCC----CCeEEEe--cCCCceEEeecC
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNNPST-PIRVI----KGHNKPITALALSPD----RGTVFTG--SHDGFITRWNAK 77 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~-~~~~~----~gh~~~V~~l~~~~~----~~~l~sg--~~D~~i~vW~~~ 77 (423)
.+++.+||+++++--..|.|++++..+... ++..+ ..-.+....|+++|+ +.+.++- ..++.|.-|...
T Consensus 36 ~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~ 115 (347)
T 3das_A 36 GLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYD 115 (347)
T ss_dssp EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBC
T ss_pred EEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeC
Confidence 567778998777643489999998643221 12111 223456789999995 4444432 344555555544
Q ss_pred Cc-----------ceeecccCCCCCCceEEeeCCCCCeEEEecC--------------CeEEEEecCCCc-------ccc
Q psy13076 78 TE-----------YIFATLPRTQRGQPIVLGGDPKGKNFLYTNG--------------NSVIIRNIENPA-------ISD 125 (423)
Q Consensus 78 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~i~~~~~~~-------~~~ 125 (423)
.+ .++..++....+..-.+.+.|+|.+++...+ ..+.-.+.+... -..
T Consensus 116 ~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~ 195 (347)
T 3das_A 116 EKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSP 195 (347)
T ss_dssp TTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCC
T ss_pred CCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCe
Confidence 31 1222232211222234667889987776421 223323333210 011
Q ss_pred cc-cCCcceEEEEEECCCCCEEEE
Q psy13076 126 IY-TEHSCAVNVAKYSPSGFYIAS 148 (423)
Q Consensus 126 ~~-~~h~~~i~~~~~sp~~~~l~s 148 (423)
++ .||.+ ...++|+|+|.+.++
T Consensus 196 i~a~G~RN-p~Gla~dp~G~L~~~ 218 (347)
T 3das_A 196 VYSYGHRN-VQGLAWDDKQRLFAS 218 (347)
T ss_dssp EEEBCCSB-CCEEEECTTCCEEEE
T ss_pred EEeeCCCC-cceEEECCCCCEEEE
Confidence 22 25654 457889998876665
No 325
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=91.99 E-value=0.67 Score=41.24 Aligned_cols=114 Identities=8% Similarity=0.039 Sum_probs=67.9
Q ss_pred eEEEEeCCCeEEEEcCCCceeeeeccccc-cCeEEEEE--CCCCCEEEEE--EecCeEEEEECCCccceecccccc--cC
Q psy13076 234 RIITGSEDNTIAVFEGPPFKFKMTKQEHS-RFVQAVRY--SPSGSHFASA--GFDGKVFLYDGASADLVSELGNPA--HK 306 (423)
Q Consensus 234 ~~~s~s~d~~i~~~~~~~~~~~~~~~~~~-~~i~~l~~--s~~g~~l~s~--s~dg~i~vwd~~~~~~~~~~~~~~--~~ 306 (423)
.++.++.||.+.-+|....+...+..... .++....- .+.+..++.+ +.||.+..++..+|.....+..+. ..
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 47788999999999988777777665431 12211110 0112233333 579999999988775433222110 11
Q ss_pred CCeEE---EEE-CC----CCCeEEEEeCCCcEEEEecCCcceeeeeeeC
Q psy13076 307 GGVYA---VAW-KP----DGTQLLTASGDKTCKLWDIETKSAVSEFLMG 347 (423)
Q Consensus 307 ~~i~~---l~~-~~----~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~ 347 (423)
..+.. ... .+ .+..+.+++.++++.-.|.++++.+.++..+
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 11211 001 01 3557889999999999999999998887544
No 326
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=91.83 E-value=6.7 Score=34.98 Aligned_cols=139 Identities=15% Similarity=0.122 Sum_probs=71.9
Q ss_pred eeEEEEeCCEEEEEeccceEEEEeccCCC-Ccee----ecccccCceeEEEEeCC----CCeEEEecC-------CCceE
Q psy13076 9 QVSCLWQGDYLLTVSLSGFISYLDVNNPS-TPIR----VIKGHNKPITALALSPD----RGTVFTGSH-------DGFIT 72 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~-~~~~----~~~gh~~~V~~l~~~~~----~~~l~sg~~-------D~~i~ 72 (423)
.+++.+||++|+.+...|.|++++.+... +++. ++....+....++++|+ +.+.++-.. ...|.
T Consensus 22 ~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~ 101 (353)
T 2g8s_A 22 ALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVG 101 (353)
T ss_dssp EEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEE
T ss_pred EEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEE
Confidence 56777789844456788999999853211 1111 11122345689999995 444444332 23455
Q ss_pred EeecCCc-------c-eeecccC--CCCCCceEEeeCCCCCeEEEecC--------------CeEEEEecCCCc------
Q psy13076 73 RWNAKTE-------Y-IFATLPR--TQRGQPIVLGGDPKGKNFLYTNG--------------NSVIIRNIENPA------ 122 (423)
Q Consensus 73 vW~~~~~-------~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~i~~~~~~~------ 122 (423)
.++.... + ++..++. ......--+.++|+|.+++...+ ..+...+.+...
T Consensus 102 r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf 181 (353)
T 2g8s_A 102 YGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPF 181 (353)
T ss_dssp EEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTT
T ss_pred EEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCC
Confidence 5555321 1 2222221 11112234677889977766432 134444444220
Q ss_pred ------ccccc-cCCcceEEEEEECC-CCCEEEE
Q psy13076 123 ------ISDIY-TEHSCAVNVAKYSP-SGFYIAS 148 (423)
Q Consensus 123 ------~~~~~-~~h~~~i~~~~~sp-~~~~l~s 148 (423)
...++ .+|. ....++|+| +|++.++
T Consensus 182 ~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 182 IKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLN 214 (353)
T ss_dssp TTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEE
T ss_pred cCCCCCCccEEEEcCc-CccceEEECCCCCEEEE
Confidence 12222 2444 457889999 6655554
No 327
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=91.83 E-value=5.8 Score=34.19 Aligned_cols=63 Identities=21% Similarity=0.226 Sum_probs=35.5
Q ss_pred CCCEEEEEEec-----CeEEEEECCCccc--eecccccccCCCeEEEEECCCCCeEEEEeCC-----CcEEEEecCCcc
Q psy13076 273 SGSHFASAGFD-----GKVFLYDGASADL--VSELGNPAHKGGVYAVAWKPDGTQLLTASGD-----KTCKLWDIETKS 339 (423)
Q Consensus 273 ~g~~l~s~s~d-----g~i~vwd~~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d-----~~i~iwd~~~~~ 339 (423)
+++.++.|+.+ ..+.+||..+.+- +..+.. .......+.+ +++.++.|+.+ ..+.+||+.+.+
T Consensus 206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~--~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT--PRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSS--CCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCC--cccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 56777777764 3588899876542 222211 1111222333 56777777665 357788877653
No 328
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=91.02 E-value=7.1 Score=33.71 Aligned_cols=63 Identities=22% Similarity=0.157 Sum_probs=35.8
Q ss_pred CCCEEEEEEecC-----eEEEEECCCccc--eecccccccCCCeEEEEECCCCCeEEEEeCC-----CcEEEEecCCcc
Q psy13076 273 SGSHFASAGFDG-----KVFLYDGASADL--VSELGNPAHKGGVYAVAWKPDGTQLLTASGD-----KTCKLWDIETKS 339 (423)
Q Consensus 273 ~g~~l~s~s~dg-----~i~vwd~~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d-----~~i~iwd~~~~~ 339 (423)
++++++.|+.++ .+.+||..+.+- +..+.. .......+.+ +++.++.|+.+ ..+.+||+.+.+
T Consensus 200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 200 KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW--KGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSC--CBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCC--CccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 567777777653 578888876542 222211 1112223333 56777777754 457788877653
No 329
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=91.01 E-value=0.97 Score=42.79 Aligned_cols=104 Identities=16% Similarity=0.195 Sum_probs=64.3
Q ss_pred EEEEECCCCCEEEEEE-ecCeEEEEECCCccc-----e----ec-ccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEe
Q psy13076 266 QAVRYSPSGSHFASAG-FDGKVFLYDGASADL-----V----SE-LGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWD 334 (423)
Q Consensus 266 ~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~-----~----~~-~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd 334 (423)
-.+.++|||++++.++ .+.++.++|...-.. + .. .....-..+....+|+++|....|-.-|..|.-|+
T Consensus 326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWn 405 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWN 405 (638)
T ss_dssp CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEe
Confidence 3578899999987766 578999999764211 0 00 00111234567899999996666667899999999
Q ss_pred cCCc----------ceeeeeeeCceeEeeEE----EEEecCcEEEEEeC
Q psy13076 335 IETK----------SAVSEFLMGNQVEDQQV----SCLWQGDYLLTVSL 369 (423)
Q Consensus 335 ~~~~----------~~i~~~~~~~~~~~~~~----~~~~~g~~l~~~~~ 369 (423)
+... ..+.......+...... +..++|++|++..-
T Consensus 406 i~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 406 MEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp HHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred ccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence 8753 23333333222221111 12358999988753
No 330
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=90.79 E-value=5.3 Score=35.47 Aligned_cols=52 Identities=15% Similarity=0.280 Sum_probs=27.3
Q ss_pred CCCEEEEEEe-c---------CeEEEEECCCccc--eecccccccCCCeEEEEECCCCCeEEEEeCC
Q psy13076 273 SGSHFASAGF-D---------GKVFLYDGASADL--VSELGNPAHKGGVYAVAWKPDGTQLLTASGD 327 (423)
Q Consensus 273 ~g~~l~s~s~-d---------g~i~vwd~~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d 327 (423)
++++++.|+. + ..+.+||..+.+- +..+. +.-...- +++. .+++.++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-p~~r~~~-~~~~-~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA-PMGMAGH-VTFV-HNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC-SSCCSSE-EEEE-ETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC-Ccccccc-eEEE-ECCEEEEEeCcC
Confidence 5677777776 3 3578888876542 11111 0111112 2222 567777777754
No 331
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=89.12 E-value=14 Score=34.27 Aligned_cols=61 Identities=11% Similarity=0.102 Sum_probs=36.9
Q ss_pred eEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecC------CCCCeeEEEECCC---CCeEEEE
Q psy13076 133 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHP------IGGPIKDIAWSPD---NQRMVVV 193 (423)
Q Consensus 133 ~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~------~~~~v~~v~~s~~---~~~~~~~ 193 (423)
..+.++|.|+|+++++-...+.|++++..++.......+.. -......|+|+|+ +..+.+.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~ 97 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence 45789999999977776544568888754443221112211 1234568999996 5555443
No 332
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=88.64 E-value=17 Score=34.60 Aligned_cols=108 Identities=13% Similarity=0.147 Sum_probs=61.1
Q ss_pred eEEEEECCCCCeEEEEeC-CCcEEEEecCCcce-----e----eeeeeCceeEeeEEEEE--ecCcEEEEEeCCCcEEEE
Q psy13076 309 VYAVAWKPDGTQLLTASG-DKTCKLWDIETKSA-----V----SEFLMGNQVEDQQVSCL--WQGDYLLTVSLSGFISYL 376 (423)
Q Consensus 309 i~~l~~~~~~~~l~s~s~-d~~i~iwd~~~~~~-----i----~~~~~~~~~~~~~~~~~--~~g~~l~~~~~~~~i~~~ 376 (423)
..++..+|||++++.++. +.++.++|+..... + ...........-.+... .+|....+...|.++..|
T Consensus 325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkW 404 (638)
T 3sbq_A 325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKW 404 (638)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEE
T ss_pred CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEE
Confidence 346888999999887765 78999999874211 0 00001111111122223 355444556689999999
Q ss_pred ecCCC---------CCceEEeccCCCceeEE-----EecCCCCeEEEe---cCCCcE
Q psy13076 377 DVNNP---------STPIRVIKGHNKPITAL-----ALSPDRGTVFTG---SHDGFI 416 (423)
Q Consensus 377 ~~~~~---------~~~~~~~~~h~~~v~~i-----~~sp~~~~l~s~---s~D~~i 416 (423)
|+... ...+.++.-|-.+-.-. .-.|||++|++. |.|+++
T Consensus 405 ni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl 461 (638)
T 3sbq_A 405 NMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFL 461 (638)
T ss_dssp EHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSC
T ss_pred eccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCc
Confidence 98642 12333444443332222 225789999886 456544
No 333
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=87.61 E-value=24 Score=35.11 Aligned_cols=378 Identities=12% Similarity=0.072 Sum_probs=180.9
Q ss_pred CCEEEEEeccceEEEEeccCCCCceeeccc-ccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC-----CC
Q psy13076 16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKG-HNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR-----TQ 89 (423)
Q Consensus 16 ~~~~~~~~~dg~i~~~d~~~~~~~~~~~~g-h~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~-----~~ 89 (423)
|+.|-.|.. +.+..+|..+. .+..+.. ....|.++...+++.+.+.. . +-+.+++.+++........ ..
T Consensus 202 ~~~lWigt~-~Gl~~~~~~~~--~~~~~~~l~~~~i~~i~~d~~g~lWigT-~-~Gl~~~~~~~~~~~~~~~~~~~~~~l 276 (758)
T 3ott_A 202 RQCVWIGTE-GYLFQYFPSTG--QIKQTEAFHNNSIKSLALDGNGDLLAGT-D-NGLYVYHNDTTPLQHIIHDSRNIQSL 276 (758)
T ss_dssp TTEEEEEEE-EEEEEEETTTT--EEEEEEEEEEEEEEEEEECTTCCEEEEE-T-TEEEEECCTTSCCEEECCCTTCTTSC
T ss_pred CCEEEEEEC-CCCeEEcCCCC--eEEeccCCCCCeEEEEEEcCCCCEEEEe-C-CceeEEecCCCcEEEEEcCCCCcCcC
Confidence 553333443 45777886542 2222221 23468888888888766544 3 4577888776543221111 01
Q ss_pred -CCCceEEeeCCCCCeEEEecCCeEEEEecCCCccccc----c--cCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCC
Q psy13076 90 -RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDI----Y--TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 162 (423)
Q Consensus 90 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~--~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~ 162 (423)
......+..+..|...+.+... +.+... ++..... . ......|.++.-..+|.+-+.. .+| +..++..+
T Consensus 277 ~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~-~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt-~~G-l~~~~~~~ 352 (758)
T 3ott_A 277 TNNIIWNIFADQEHNIWLGTDYG-ISLSRY-NSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGG-ANG-LIRFTDPA 352 (758)
T ss_dssp SCSCEEEEEECTTCCEEEEESSS-EEEECC-CC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEE-TTE-EEEESCTT
T ss_pred CcCeEEEEEEcCCCCEEEEeCCc-cccccc-CCceeEEecccCCCCCCCceEEEEEEcCCCCEEEee-CCc-ceeecccc
Confidence 1123345567778877776543 333222 1111100 0 0123468888888888766543 344 55565443
Q ss_pred Cce--eEEeee-----cCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceeccc--C-----CCcceeEEEEe
Q psy13076 163 KEH--ILKNEF-----HPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS--G-----QSKPINSCDFK 228 (423)
Q Consensus 163 ~~~--~~~~~~-----~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~i~~~~~~ 228 (423)
++. ...... .-....|.++.-.++|...+.. . .+ ...+...++. ...+. . ....|.++...
T Consensus 353 ~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt-~-~G--L~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~i~~d 427 (758)
T 3ott_A 353 GERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT-D-GS--INRYDYATRQ-FIHYNIVDNTGTYNTNWTYYIFED 427 (758)
T ss_dssp SSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE-T-TE--EEEEETTTTE-EEEEEEECCC--CBSSSEEEEEEC
T ss_pred cccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe-C-Cc--HhhcCcCCCc-EEEeecCCCcCCCCCceEEEEEEc
Confidence 211 100000 0012357788877777655432 2 22 1223333322 11111 0 12235555554
Q ss_pred cCCCeeEEEEeCCCeEEEEcCCC------ceee--ee---cc-ccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccc
Q psy13076 229 PSRPFRIITGSEDNTIAVFEGPP------FKFK--MT---KQ-EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADL 296 (423)
Q Consensus 229 ~~~~~~~~s~s~d~~i~~~~~~~------~~~~--~~---~~-~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~ 296 (423)
+++ .+..|+..+-+..++... ..+. .. .. .....|.++...++|.+-+.++..+-+..+|..+++.
T Consensus 428 ~~g--~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~ 505 (758)
T 3ott_A 428 TAG--QLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREV 505 (758)
T ss_dssp TTS--EEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEE
T ss_pred CCC--CEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCce
Confidence 444 366677666677776321 1111 01 01 1223588899999998765333344588888876543
Q ss_pred eeccccc--ccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeee-eCce-eEeeEEEEEecCcEEEEEeCCCc
Q psy13076 297 VSELGNP--AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFL-MGNQ-VEDQQVSCLWQGDYLLTVSLSGF 372 (423)
Q Consensus 297 ~~~~~~~--~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~-~~~~-~~~~~~~~~~~g~~l~~~~~~~~ 372 (423)
.. +... .....+.++..+.+|+..+. +..| +..+|..+.+.. .+. .+-+ .....+. .+...|-.++.. .
T Consensus 506 ~~-~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~-~~~~~gl~~~~i~~i~--~~~g~lWi~t~~-G 578 (758)
T 3ott_A 506 TK-LFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQ-SISFGSFSNNEILSMT--CVKNSIWVSTTN-G 578 (758)
T ss_dssp EE-ECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCC-BCCCCC---CCEEEEE--EETTEEEEEESS-C
T ss_pred EE-ecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceE-EecccCCCccceEEEE--ECCCCEEEECCC-C
Confidence 32 2111 11245778888888887665 4445 788887655421 111 0000 0111121 123345445544 4
Q ss_pred EEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEE
Q psy13076 373 ISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITR 418 (423)
Q Consensus 373 i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~ 418 (423)
+..+|..+.. +....-....++...+...+..|.-|+.+|.+++
T Consensus 579 l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~G~l~fG~~~Gl~~f 622 (758)
T 3ott_A 579 LWIIDRKTMD--ARQQNMTNKRFTSLLFDPKEDCVYLGGADGFGIS 622 (758)
T ss_dssp EEEEETTTCC--EEEC--CCCCCSEEEEETTTTEEEEECBSEEEEE
T ss_pred eEEEcCCCce--eEEecCCCCceeeeEEECCCCcEEEecCCceEEE
Confidence 6677766532 2221111223344444433445666777775544
No 334
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=86.48 E-value=15 Score=31.54 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=53.3
Q ss_pred CCCEEEEEEecC-------eEEEEECCCccc--eecccccccCCCeEEEEECCCCCeEEEEeCC-----CcEEEEecCCc
Q psy13076 273 SGSHFASAGFDG-------KVFLYDGASADL--VSELGNPAHKGGVYAVAWKPDGTQLLTASGD-----KTCKLWDIETK 338 (423)
Q Consensus 273 ~g~~l~s~s~dg-------~i~vwd~~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d-----~~i~iwd~~~~ 338 (423)
+++.++.|+.++ .+.+||..+.+- +..+... ......+.+ +++.++.|+.+ ..+.+||+.+.
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTR--RSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSC--CBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccc--cccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCC
Confidence 567777776543 478888776542 2222111 111122223 56777777764 36889998876
Q ss_pred ceeeeeeeCceeEeeEEEEEecCcEEEEEeCCC-----cEEEEecCC
Q psy13076 339 SAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSG-----FISYLDVNN 380 (423)
Q Consensus 339 ~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~-----~i~~~~~~~ 380 (423)
+-...-....... ..-.+..++..++.|..++ .+..||..+
T Consensus 231 ~W~~~~~~~~~r~-~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~ 276 (302)
T 2xn4_A 231 AWRQVADMNMCRR-NAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTT 276 (302)
T ss_dssp EEEEECCCSSCCB-SCEEEEETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred CEeeCCCCCCccc-cCeEEEECCEEEEECCcCCCcccccEEEEcCCC
Confidence 4322111111111 1112334677667766543 377777765
No 335
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=85.20 E-value=5.5 Score=42.47 Aligned_cols=129 Identities=12% Similarity=0.141 Sum_probs=83.9
Q ss_pred CeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcE
Q psy13076 284 GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDY 363 (423)
Q Consensus 284 g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~ 363 (423)
.+|.|.|+..+..+.+.... -.+...+|..+.++--. ..++.|||+.++..++++....++-...|. +...
T Consensus 48 ~~vvIidl~~~~~~~rrpi~-----AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWi---s~~~ 118 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRPIS-----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWI---SLNT 118 (1630)
T ss_pred ceEEEEECCCCCCccccccc-----chhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEec---CCCe
Confidence 37888888876654332211 13456788888777654 678999999998888877665543222221 2333
Q ss_pred EEEEeCCCcEEEEecCCCCCceEEeccC----CCceeEEEecCCCCeEEEec-------CCCcEEEeeCC
Q psy13076 364 LLTVSLSGFISYLDVNNPSTPIRVIKGH----NKPITALALSPDRGTVFTGS-------HDGFITRWNAK 422 (423)
Q Consensus 364 l~~~~~~~~i~~~~~~~~~~~~~~~~~h----~~~v~~i~~sp~~~~l~s~s-------~D~~i~~W~~~ 422 (423)
| ..=.+..++.|++.....|++.+..| ...|..-.-+++.+|++-.| -.|.+.+|+.+
T Consensus 119 l-~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e 187 (1630)
T 1xi4_A 119 V-ALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (1630)
T ss_pred e-EEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc
Confidence 3 33346789999997666777766666 44677788899999987443 24666666653
No 336
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=84.71 E-value=19 Score=31.15 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=16.4
Q ss_pred CCCEEEEEEecC-----eEEEEECCCcc
Q psy13076 273 SGSHFASAGFDG-----KVFLYDGASAD 295 (423)
Q Consensus 273 ~g~~l~s~s~dg-----~i~vwd~~~~~ 295 (423)
+++.++.|+.++ .+.+||..+.+
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred CCEEEEEeccCCCCccceEEEEECCCCe
Confidence 667778887654 57888887653
No 337
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=84.63 E-value=34 Score=34.02 Aligned_cols=384 Identities=12% Similarity=0.084 Sum_probs=189.1
Q ss_pred CCEEEEEeccceEEEEeccCCCCceeec-ccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeec--ccCC-CCC
Q psy13076 16 GDYLLTVSLSGFISYLDVNNPSTPIRVI-KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFAT--LPRT-QRG 91 (423)
Q Consensus 16 ~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~--~~~~-~~~ 91 (423)
.+.|-.+..+| +..+|..+.. .... ......|.++.. .++. |..|+.+ .+..+|.+++..... .... ...
T Consensus 73 ~g~lWigT~~G-l~~yd~~~~~--f~~~~~~~~~~i~~i~~-~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~ 146 (758)
T 3ott_A 73 NTYLYMGTDNG-ILVYNYRADR--YEQPETDFPTDVRTMAL-QGDT-LWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNN 146 (758)
T ss_dssp TTEEEEEETTE-EEEEETTTTE--ECCCSCCCCSCEEEEEE-ETTE-EEEEETT-EEEEEETTTCCEEEECHHHHCCSCS
T ss_pred CCcEEEEeCCC-eEEEeCCCCE--EECcccCCCceEEEEEe-cCCc-EEEEcCC-cceeEeCCCCeEEEeccCCCCcCCC
Confidence 34555556555 6788875421 1111 112235776654 3554 4444454 577888876554321 0001 112
Q ss_pred CceEEeeCCCCCeEEEecCCeEEEEecCCCcccccc-cC----CcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCcee
Q psy13076 92 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIY-TE----HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 166 (423)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~----h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~ 166 (423)
....+..+++|...+.+. +.+...+.++....... .. ....|.++...+++..|-.|.. +.+..+|..+.+..
T Consensus 147 ~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~ 224 (758)
T 3ott_A 147 TIYSIIRTKDNQIYVGTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIK 224 (758)
T ss_dssp CEEEEEECTTCCEEEEET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEE
T ss_pred eEEEEEEcCCCCEEEEeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEE
Confidence 233455677788777664 45666666554432211 11 1234788877776654333333 45777887655432
Q ss_pred EEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceeccc--------CCCcceeEEEEecCCCeeEEEE
Q psy13076 167 LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS--------GQSKPINSCDFKPSRPFRIITG 238 (423)
Q Consensus 167 ~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~~~s~ 238 (423)
...... ...|.++...++|...+.. ..+ ...+...... ...+. .....|.++....++. +..|
T Consensus 225 ~~~~l~--~~~i~~i~~d~~g~lWigT--~~G--l~~~~~~~~~-~~~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWiG 295 (758)
T 3ott_A 225 QTEAFH--NNSIKSLALDGNGDLLAGT--DNG--LYVYHNDTTP-LQHIIHDSRNIQSLTNNIIWNIFADQEHN--IWLG 295 (758)
T ss_dssp EEEEEE--EEEEEEEEECTTCCEEEEE--TTE--EEEECCTTSC-CEEECCCTTCTTSCSCSCEEEEEECTTCC--EEEE
T ss_pred eccCCC--CCeEEEEEEcCCCCEEEEe--CCc--eeEEecCCCc-EEEEEcCCCCcCcCCcCeEEEEEEcCCCC--EEEE
Confidence 111111 2357788888777765543 222 1223332221 11111 1223466776665554 5556
Q ss_pred eCCCeEEEEcCC-Cceeeeec----cccccCeEEEEECCCCCEEEEEEecCeEEEEECCCcc--ceeccc-----ccccC
Q psy13076 239 SEDNTIAVFEGP-PFKFKMTK----QEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD--LVSELG-----NPAHK 306 (423)
Q Consensus 239 s~d~~i~~~~~~-~~~~~~~~----~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~--~~~~~~-----~~~~~ 306 (423)
+..| +.++... .+...... ......|.++.-.++|.+-+ |+.+| +..++..+++ ....+. .....
T Consensus 296 T~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 372 (758)
T 3ott_A 296 TDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSH 372 (758)
T ss_dssp ESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCEEECTTCSSSCCSC
T ss_pred eCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeEEeccCCcCCCCCC
Confidence 6556 4444321 12111100 01224578888888887554 44454 6666655432 111111 01122
Q ss_pred CCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeee-Ccee--Eee-EEEEEe-cCcEEEEEeCCCcEEEEecCC-
Q psy13076 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLM-GNQV--EDQ-QVSCLW-QGDYLLTVSLSGFISYLDVNN- 380 (423)
Q Consensus 307 ~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~-~~~~--~~~-~~~~~~-~g~~l~~~~~~~~i~~~~~~~- 380 (423)
..|.++.-+++|+..+. + ++-+..||.++++.. .+.. .... ... ..+... ....|-.|+..+.+..++..+
T Consensus 373 ~~v~~i~~d~~g~lWig-t-~~GL~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~ 449 (758)
T 3ott_A 373 NRIRHIYEDKEQQLWIA-T-DGSINRYDYATRQFI-HYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKL 449 (758)
T ss_dssp SCEEEEEECTTSCEEEE-E-TTEEEEEETTTTEEE-EEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHH
T ss_pred CceEEEEECCCCCEEEE-e-CCcHhhcCcCCCcEE-EeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccc
Confidence 45888888888876553 4 346888998776432 2221 1100 001 111222 234566677777788887542
Q ss_pred ---CCCceE---Ee---ccC-CCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076 381 ---PSTPIR---VI---KGH-NKPITALALSPDRGTVFTGSHDGFITRWNAK 422 (423)
Q Consensus 381 ---~~~~~~---~~---~~h-~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~ 422 (423)
...... .. .+- ...|.++...+++++-+.++..+-+..+|.+
T Consensus 450 ~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~ 501 (758)
T 3ott_A 450 MQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPR 501 (758)
T ss_dssp HHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETT
T ss_pred cccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCC
Confidence 001111 11 111 2358999988888876633333446666654
No 338
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=82.60 E-value=19 Score=33.44 Aligned_cols=106 Identities=12% Similarity=0.100 Sum_probs=57.5
Q ss_pred ceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce---eeee----cc-----ccccCeEEEEECCC----CCEEEEEEec-
Q psy13076 221 PINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK---FKMT----KQ-----EHSRFVQAVRYSPS----GSHFASAGFD- 283 (423)
Q Consensus 221 ~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~---~~~~----~~-----~~~~~i~~l~~s~~----g~~l~s~s~d- 283 (423)
....++|.|++.-+++.+...|.|++++..... .... .. ........++++|+ +.+.++-+.+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 456788899886335556678999999632211 0000 11 11345678999996 4444443321
Q ss_pred -----------CeEEEEECCCc----------cceecccccccCCCeEEEEECCCCCeEEEEeC
Q psy13076 284 -----------GKVFLYDGASA----------DLVSELGNPAHKGGVYAVAWKPDGTQLLTASG 326 (423)
Q Consensus 284 -----------g~i~vwd~~~~----------~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~ 326 (423)
..|.-|....+ +.+..+...........|+|.|||.+.++.+.
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 13444554321 12222221111223578999999987777654
No 339
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=81.81 E-value=2.7 Score=37.31 Aligned_cols=107 Identities=9% Similarity=0.113 Sum_probs=59.4
Q ss_pred CEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEE--CC-CCCeEEEE-eCCCcEEEEecCCcceeeeeeeCcee
Q psy13076 275 SHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW--KP-DGTQLLTA-SGDKTCKLWDIETKSAVSEFLMGNQV 350 (423)
Q Consensus 275 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~--~~-~~~~l~s~-s~d~~i~iwd~~~~~~i~~~~~~~~~ 350 (423)
..++.++.||.|.-+|.++|+...++... ....+....- .+ ++..++.. +.||.+..+|..++...-.+....-.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE-NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG-GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC-ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 36788999999999999999887776432 1122222110 01 22333333 57999999998877433222111000
Q ss_pred EeeEEE----EEe-------cCcEEEEEeCCCcEEEEecCCCC
Q psy13076 351 EDQQVS----CLW-------QGDYLLTVSLSGFISYLDVNNPS 382 (423)
Q Consensus 351 ~~~~~~----~~~-------~g~~l~~~~~~~~i~~~~~~~~~ 382 (423)
....+. ... .+..+.+|+.+|.++-.|..+++
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~ 132 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE 132 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence 000011 001 45666777778877777776643
No 340
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=80.50 E-value=28 Score=30.15 Aligned_cols=125 Identities=11% Similarity=0.110 Sum_probs=66.0
Q ss_pred EEECCCCCEEEEEE--ec--CeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeC-CCcEEEEecCCcceee
Q psy13076 268 VRYSPSGSHFASAG--FD--GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASG-DKTCKLWDIETKSAVS 342 (423)
Q Consensus 268 l~~s~~g~~l~s~s--~d--g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~-d~~i~iwd~~~~~~i~ 342 (423)
..++|+|++|+-.. .+ ..|...++.. .....+.. +. + .+|+|+++.|.-.+. ...|..-++..+.. +
T Consensus 109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~--~~--~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~-~ 180 (302)
T 3s25_A 109 IYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKN--HY--L--FTCNTSDRYFYYNNPKNGQLYRYDTASQSE-A 180 (302)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEES--SC--C--CCSEEETTEEEEECTTTCCEEEEETTTTEE-E
T ss_pred cEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeC--CC--c--eEeeEECCEEEEEeCCCceEEEEECCCCCE-E
Confidence 36778899887765 23 3455555543 22333321 11 1 456778887775544 56777777765542 2
Q ss_pred eeeeCceeEeeEEEEEecCcEEEEEeCC--CcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEe
Q psy13076 343 EFLMGNQVEDQQVSCLWQGDYLLTVSLS--GFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410 (423)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~--~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~ 410 (423)
.+..+ ... ....|++.+|.-.... ..|..-++..... ..+.. ..+ -.|+|++++|.-+
T Consensus 181 ~l~~~-~~~---~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~--~~Lt~--~~~--~~~~~~g~~Iy~~ 240 (302)
T 3s25_A 181 LFYDC-NCY---KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP--VVLTE--ANI--EHYNVYGSLIFYQ 240 (302)
T ss_dssp EEECS-CEE---EEEEEETTEEEEEEGGGTTEEEEECSSSCCC--EECSC--SCE--EEEEEETTEEEEE
T ss_pred EEeCC-Ccc---ceeeecCCEEEEEEcCCCcEEEEEECCCCCe--EEEeC--CCc--ceEEECCCEEEEE
Confidence 22211 111 1234688888765543 3565655544332 23322 223 3367778777644
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=80.24 E-value=48 Score=32.67 Aligned_cols=108 Identities=16% Similarity=0.159 Sum_probs=57.2
Q ss_pred CCCCEEEEEEecC--eEEEEECCCccceeccc----ccccCCCeEEEEECCC-CCeEEEEeC--C-----CcEEEEecCC
Q psy13076 272 PSGSHFASAGFDG--KVFLYDGASADLVSELG----NPAHKGGVYAVAWKPD-GTQLLTASG--D-----KTCKLWDIET 337 (423)
Q Consensus 272 ~~g~~l~s~s~dg--~i~vwd~~~~~~~~~~~----~~~~~~~i~~l~~~~~-~~~l~s~s~--d-----~~i~iwd~~~ 337 (423)
.+++.++.|+.++ .+.+||..+..-. .+. .+.....-.++.+..+ ++.++.|+. + ..+.+||+.+
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~-~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~ 577 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEEIFK-DVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA 577 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTTEEE-ECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT
T ss_pred cCCEEEEECCCCCCCCEEEEECCCCceE-EccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC
Confidence 4778888887655 6889998765421 111 0111111233555555 667777765 2 3588999887
Q ss_pred cce-----eeeeee--CceeEeeEEEEEec-CcEEEEEeC--------CCcEEEEecCCC
Q psy13076 338 KSA-----VSEFLM--GNQVEDQQVSCLWQ-GDYLLTVSL--------SGFISYLDVNNP 381 (423)
Q Consensus 338 ~~~-----i~~~~~--~~~~~~~~~~~~~~-g~~l~~~~~--------~~~i~~~~~~~~ 381 (423)
... -..... ........ .+..+ +..++.|+. ...+..||..+.
T Consensus 578 ~~w~~~~~W~~~~~~p~~~R~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 578 ENATEPITVIKKLQHPLFQRYGSQ-IKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSE 636 (695)
T ss_dssp TCSSCCEEEEEEEECGGGCCBSCE-EEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred CccccceEEEEcCCCCCCCcccce-EEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence 661 111111 01111111 22334 676777763 345888888753
No 342
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.16 E-value=8.5 Score=39.62 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=33.8
Q ss_pred CeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeee
Q psy13076 308 GVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLM 346 (423)
Q Consensus 308 ~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~ 346 (423)
.+.+++..++..++++-+.|+++|+|++.+++++.+...
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 466777888889999999999999999999999887644
No 343
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=79.65 E-value=29 Score=29.88 Aligned_cols=93 Identities=11% Similarity=0.115 Sum_probs=45.9
Q ss_pred CCCCEEEEEEe-c-----CeEEEEECCCccc--eecccccccCCCeEEEEECCCCCeEEEEeCCC-----cEEEEecCCc
Q psy13076 272 PSGSHFASAGF-D-----GKVFLYDGASADL--VSELGNPAHKGGVYAVAWKPDGTQLLTASGDK-----TCKLWDIETK 338 (423)
Q Consensus 272 ~~g~~l~s~s~-d-----g~i~vwd~~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~-----~i~iwd~~~~ 338 (423)
-+++.++.|+. + ..+.+||..+.+- +..+..+ ...-..+.+ +++.++.|+.++ .+.+||+.+.
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTA--RSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSC--CBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCc--hhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCC
Confidence 35667777776 2 3588888776532 1122111 111122222 567777777654 4788898776
Q ss_pred ceeeeeeeCceeEeeEEEEEecCcEEEEEeC
Q psy13076 339 SAVSEFLMGNQVEDQQVSCLWQGDYLLTVSL 369 (423)
Q Consensus 339 ~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~ 369 (423)
+-...-....+.. ....+..++..++.|..
T Consensus 223 ~W~~~~~~p~~r~-~~~~~~~~~~l~v~GG~ 252 (315)
T 4asc_A 223 KWAPFEAFPQERS-SLSLVSLVGTLYAIGGF 252 (315)
T ss_dssp EEEEECCCSSCCB-SCEEEEETTEEEEEEEE
T ss_pred eEEECCCCCCccc-ceeEEEECCEEEEECCc
Confidence 4322111111111 11222346666666654
No 344
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=78.63 E-value=35 Score=30.14 Aligned_cols=232 Identities=13% Similarity=0.136 Sum_probs=125.1
Q ss_pred CCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEE
Q psy13076 67 HDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYI 146 (423)
Q Consensus 67 ~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l 146 (423)
.+..|-+-|+++...... +.-...... .+|..+.++...+..+.+++++.+.-.+.+.-.. .|.--+|-.+...-
T Consensus 47 ~~~~VvIiDl~n~~~~~R--rpi~AdsAI--MnP~~~ViALrag~~LQiFnletK~klks~~~~e-~VvfWkWis~~~L~ 121 (365)
T 2xzh_A 47 EQAQVVIIDMNDPSNPIR--RPISADSAI--MNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVA 121 (365)
T ss_dssp TEEEEEEEETTSTTSCEE--EECCCSEEE--ECSSSSEEEEEETTEEEEEETTTTEEEEEEECSS-CEEEEEECSSSEEE
T ss_pred CCCEEEEEECCCCCCccc--cccccceee--eCCCccEEEEecCCeEEEechHHhhhhcceecCC-ccEEEEecCCCeEE
Confidence 344677778776422111 111222222 3677788888889999999999887666655543 56667776554333
Q ss_pred EEEccCCcEEEEEcCCC-ceeEEeeecC--CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCccee
Q psy13076 147 ASGDISGKVRIWDTVNK-EHILKNEFHP--IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPIN 223 (423)
Q Consensus 147 ~s~~~d~~i~vwd~~~~-~~~~~~~~~~--~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 223 (423)
+.. +..|.-|+++.. .+....+.+. ....|-.-..+++.++++++|-..
T Consensus 122 lVT--~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~-------------------------- 173 (365)
T 2xzh_A 122 LVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA-------------------------- 173 (365)
T ss_dssp EEE--SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEE--------------------------
T ss_pred EEc--CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEec--------------------------
Confidence 333 357899998752 2222222211 234566677788888887765210
Q ss_pred EEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEEC--CC-CCEEEEEEe---cCeEEEEECCCc---
Q psy13076 224 SCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYS--PS-GSHFASAGF---DGKVFLYDGASA--- 294 (423)
Q Consensus 224 ~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s--~~-g~~l~s~s~---dg~i~vwd~~~~--- 294 (423)
... .+ .|.+.+|.... +.....++|...-..+.+. +. ..+++.+.. .+++.+.++...
T Consensus 174 ------~~~-~v-----~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~ 240 (365)
T 2xzh_A 174 ------QQN-RV-----VGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG 240 (365)
T ss_dssp ------ETT-EE-----EEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTT
T ss_pred ------cCC-cc-----ceeEEEEeecc-cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCC
Confidence 000 01 13344554322 2222333332211111111 00 113333333 257888887432
Q ss_pred cc-e----ec--ccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeee
Q psy13076 295 DL-V----SE--LGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEF 344 (423)
Q Consensus 295 ~~-~----~~--~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~ 344 (423)
.. . .. +...+-..-..++..++.-..+..-+.-|.+.+||+.++.++..-
T Consensus 241 ~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~n 297 (365)
T 2xzh_A 241 NQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 297 (365)
T ss_dssp CCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEe
Confidence 11 1 11 111123445567888887778888889999999999999987554
No 345
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=76.98 E-value=59 Score=31.97 Aligned_cols=148 Identities=7% Similarity=0.030 Sum_probs=73.5
Q ss_pred CCCEEEEEEecC------eEEEEECCCcc--ceecccccccCCCeEEEEECCCCCeEEEEeCCC--cEEEEecCCcceee
Q psy13076 273 SGSHFASAGFDG------KVFLYDGASAD--LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK--TCKLWDIETKSAVS 342 (423)
Q Consensus 273 ~g~~l~s~s~dg------~i~vwd~~~~~--~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~--~i~iwd~~~~~~i~ 342 (423)
+++.++.|+.++ .+.+||..+.+ .+..+... ... .+++.-.++..++.|+.++ .+.+||..+..-..
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~--R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~ 527 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHT--RFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKD 527 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBC--CBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCC--ccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEE
Confidence 777777777543 46788877643 22222111 111 2333324788888887655 68999988764322
Q ss_pred eee---eCceeEeeE-EEEEec-CcEEEEEeC--C-----CcEEEEecCCCCC-----c--eEEeccCCCceeEEEecCC
Q psy13076 343 EFL---MGNQVEDQQ-VSCLWQ-GDYLLTVSL--S-----GFISYLDVNNPST-----P--IRVIKGHNKPITALALSPD 403 (423)
Q Consensus 343 ~~~---~~~~~~~~~-~~~~~~-g~~l~~~~~--~-----~~i~~~~~~~~~~-----~--~~~~~~h~~~v~~i~~sp~ 403 (423)
.-. ......... +.+... +..++.|+. + ..+..||..+..- . +.........-.+++...+
T Consensus 528 ~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~ 607 (695)
T 2zwa_A 528 VTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITP 607 (695)
T ss_dssp CCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEET
T ss_pred ccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCC
Confidence 111 001111111 111112 556666654 2 3578888876541 1 1110001111112333334
Q ss_pred CCeEEEecCC--------CcEEEeeCCC
Q psy13076 404 RGTVFTGSHD--------GFITRWNAKT 423 (423)
Q Consensus 404 ~~~l~s~s~D--------~~i~~W~~~~ 423 (423)
+++++.||.+ ..|.+||+++
T Consensus 608 ~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 608 RKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp TEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred CEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 7788888843 4577787754
No 346
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=66.07 E-value=18 Score=34.75 Aligned_cols=55 Identities=24% Similarity=0.379 Sum_probs=42.1
Q ss_pred EEeeCCCCCeEEEecC-------------CeEEEEecCCCcccccccCCc-ceEEEEEECCCCCEEEEE
Q psy13076 95 VLGGDPKGKNFLYTNG-------------NSVIIRNIENPAISDIYTEHS-CAVNVAKYSPSGFYIASG 149 (423)
Q Consensus 95 ~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~~~h~-~~i~~~~~sp~~~~l~s~ 149 (423)
-+.+++.|.++++..+ +.+.+.+..++++...+.++. ++++.++|+||++.|...
T Consensus 480 NL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 480 GLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred ceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4678899998888654 345666677788888887765 699999999999877654
No 347
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=64.97 E-value=7.3 Score=40.14 Aligned_cols=37 Identities=14% Similarity=0.069 Sum_probs=31.3
Q ss_pred ceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecc
Q psy13076 49 PITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATL 85 (423)
Q Consensus 49 ~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~ 85 (423)
.+.+++..++..+++|-+.|+++|+||+.++.++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4567777778889999999999999999999877654
No 348
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=64.29 E-value=73 Score=27.81 Aligned_cols=29 Identities=10% Similarity=-0.008 Sum_probs=16.3
Q ss_pred CCCCEEEEEEecC------eEEEEECCCccceecc
Q psy13076 272 PSGSHFASAGFDG------KVFLYDGASADLVSEL 300 (423)
Q Consensus 272 ~~g~~l~s~s~dg------~i~vwd~~~~~~~~~~ 300 (423)
-++++++.|+.++ .+.++++++++.+...
T Consensus 315 ~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 315 WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 3567777777543 3455566666655443
No 349
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=60.51 E-value=84 Score=27.22 Aligned_cols=184 Identities=9% Similarity=0.121 Sum_probs=98.8
Q ss_pred EEEEeCCCeEEEEcCCCceeee---------eccccccCeEEEEECCCCCEEEEEEecCeEEEEECCC---------ccc
Q psy13076 235 IITGSEDNTIAVFEGPPFKFKM---------TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGAS---------ADL 296 (423)
Q Consensus 235 ~~s~s~d~~i~~~~~~~~~~~~---------~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~---------~~~ 296 (423)
+++.+.+|.|+-.....+.... .+.+ .+.+..+........++..+..|.++-+.... |..
T Consensus 11 ~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~ 89 (312)
T 1suu_A 11 VVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQN 89 (312)
T ss_dssp EEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------CB
T ss_pred EEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcC
Confidence 6677888888877544332111 1122 23344444444556777788888887776431 111
Q ss_pred ee-cccccccCCCeEEEEECC---CCCeEEEEeCCCcEEEEecCCcce-----eeeeeeCceeEeeEEEEEecCcEEEEE
Q psy13076 297 VS-ELGNPAHKGGVYAVAWKP---DGTQLLTASGDKTCKLWDIETKSA-----VSEFLMGNQVEDQQVSCLWQGDYLLTV 367 (423)
Q Consensus 297 ~~-~~~~~~~~~~i~~l~~~~---~~~~l~s~s~d~~i~iwd~~~~~~-----i~~~~~~~~~~~~~~~~~~~g~~l~~~ 367 (423)
+. .+... ....|.++..-+ +..+|+..+..|.++.-.+..... +..+................++.++..
T Consensus 90 i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~ 168 (312)
T 1suu_A 90 ISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICL 168 (312)
T ss_dssp GGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTCEEEEE
T ss_pred hhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCCEEEEE
Confidence 11 11111 123354443322 467788889999999887754322 111111111111222222346778899
Q ss_pred eCCCcEEEEecCCCC---C-c--eEE--eccCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076 368 SLSGFISYLDVNNPS---T-P--IRV--IKGHNKPITALALSPDRGTVFTGSHDGFITRWNA 421 (423)
Q Consensus 368 ~~~~~i~~~~~~~~~---~-~--~~~--~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~ 421 (423)
+.+|....+....-+ . . +.. +.. .+.|..+..-+++..|++.+..|..+...+
T Consensus 169 T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~ 229 (312)
T 1suu_A 169 SKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNM 229 (312)
T ss_dssp ETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEG
T ss_pred eCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEH
Confidence 999999888765411 1 0 111 222 345666655555667778888888776654
No 350
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=58.78 E-value=15 Score=36.00 Aligned_cols=37 Identities=14% Similarity=0.344 Sum_probs=30.4
Q ss_pred CeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeee
Q psy13076 308 GVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLM 346 (423)
Q Consensus 308 ~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~ 346 (423)
.|.++.+ +..+|++-+.|+++|+||+++++++.+...
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3555554 467999999999999999999998887765
No 351
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=58.63 E-value=32 Score=32.82 Aligned_cols=55 Identities=24% Similarity=0.389 Sum_probs=39.9
Q ss_pred EeeCCCCCeEEEecC-------------CeEEEEecCCCcccccccCC-cceEEEEEECCCCCEEEEEc
Q psy13076 96 LGGDPKGKNFLYTNG-------------NSVIIRNIENPAISDIYTEH-SCAVNVAKYSPSGFYIASGD 150 (423)
Q Consensus 96 ~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~~~h-~~~i~~~~~sp~~~~l~s~~ 150 (423)
+.++++|.+++.+.. +.+...+.+++++...+.+. ..+++.++|+||++.|...-
T Consensus 481 L~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 481 LGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred eEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 567888888885543 25666677777777777654 36899999999998887653
No 352
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=58.22 E-value=7.4 Score=41.03 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=32.4
Q ss_pred eEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeC
Q psy13076 309 VYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMG 347 (423)
Q Consensus 309 i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~ 347 (423)
+.+++..++..++++-+.|+++|+|++.+++++.+....
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 345566778899999999999999999999998876543
No 353
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=57.70 E-value=1.2e+02 Score=28.05 Aligned_cols=232 Identities=13% Similarity=0.132 Sum_probs=122.4
Q ss_pred CCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEE
Q psy13076 67 HDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYI 146 (423)
Q Consensus 67 ~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l 146 (423)
.+..|-|-|+.+...... +.-.... +-.+|..+.++...+..+.+++++.+.-.+.+.-.. .|.--+|-.+. .+
T Consensus 46 ~~~~vvIiDl~~~~~~~r--rpi~Ads--AIMnP~~~iiALrag~~lQiFnle~K~klks~~~~e-~VvfWkWis~~-~l 119 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIR--RPISADS--AIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TV 119 (494)
T ss_dssp TCCEEEEEETTSTTSCEE--EECCCSE--EEECSSSSCEEEEETTEEEEEETTTTEEEEEEECSS-CCCEEEEEETT-EE
T ss_pred CCCeEEEEECCCCCccee--cccccce--eeeCCCCcEEEEecCCeEEEEchHHhhhhcceecCC-CceEEEecCCC-eE
Confidence 444677778776322111 0111222 223566777888889999999999877666655544 34455554433 33
Q ss_pred EEEccCCcEEEEEcCCC-ceeEEeeecC--CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCccee
Q psy13076 147 ASGDISGKVRIWDTVNK-EHILKNEFHP--IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPIN 223 (423)
Q Consensus 147 ~s~~~d~~i~vwd~~~~-~~~~~~~~~~--~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 223 (423)
+-.. +..|.-|+++.. .+....+.+. .+..|..-..+++.++++++|-...
T Consensus 120 ~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~------------------------- 173 (494)
T 1bpo_A 120 ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQ------------------------- 173 (494)
T ss_dssp EEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEE-------------------------
T ss_pred EEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeeccc-------------------------
Confidence 3322 357899998642 2222222211 2345667777888888887652100
Q ss_pred EEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCC---CCEEEEEEe---cCeEEEEECCCc---
Q psy13076 224 SCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPS---GSHFASAGF---DGKVFLYDGASA--- 294 (423)
Q Consensus 224 ~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~---g~~l~s~s~---dg~i~vwd~~~~--- 294 (423)
.. .+ .|.+.+|.... +.....++|...-..+.+.-+ ...++.+.. .+++.+.++...
T Consensus 174 -------~~-~v-----~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~ 239 (494)
T 1bpo_A 174 -------QN-RV-----VGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG 239 (494)
T ss_dssp -------TT-EE-----EEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTT
T ss_pred -------CC-cc-----cceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccC
Confidence 00 01 13344443221 122223333221111111100 012333332 267888877432
Q ss_pred c-c----eecc--cccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeee
Q psy13076 295 D-L----VSEL--GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEF 344 (423)
Q Consensus 295 ~-~----~~~~--~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~ 344 (423)
. . ...+ ...+-..-..++..++.-..+..-+.-|.+.+||+.++.++..-
T Consensus 240 ~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~n 296 (494)
T 1bpo_A 240 NQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (494)
T ss_dssp CCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeee
Confidence 1 0 1111 11123445567888888888888889999999999999987543
No 354
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=56.87 E-value=7.8 Score=40.84 Aligned_cols=37 Identities=14% Similarity=0.069 Sum_probs=30.6
Q ss_pred ceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecc
Q psy13076 49 PITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATL 85 (423)
Q Consensus 49 ~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~ 85 (423)
.+.+++..++..+|++-+.|+++|+||+.++.++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 3456667778889999999999999999999877653
No 355
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=55.80 E-value=32 Score=33.05 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=39.6
Q ss_pred eEEEEECCCCCEEEEEEec------------CeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEe
Q psy13076 265 VQAVRYSPSGSHFASAGFD------------GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS 325 (423)
Q Consensus 265 i~~l~~s~~g~~l~s~s~d------------g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s 325 (423)
.--|+|+|.|.+++.-..+ ..+.+.+..+++...-+.. .-..+++.++|+||++.|+..-
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~-P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEECTTSSEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC-CCCccCcCeeECCCCCEEEEEE
Confidence 4568999999866654322 2455666666665433332 2346789999999999888763
No 356
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=53.33 E-value=15 Score=36.12 Aligned_cols=36 Identities=6% Similarity=0.154 Sum_probs=28.0
Q ss_pred ceeEEEEeCCCCeEEEecCCCceEEeecCCcceeeccc
Q psy13076 49 PITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLP 86 (423)
Q Consensus 49 ~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~ 86 (423)
.|.++.+ +..+|++-+.|+++|+||++++.++....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 3554444 46799999999999999999998766543
No 357
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=52.78 E-value=1.3e+02 Score=26.90 Aligned_cols=150 Identities=12% Similarity=0.036 Sum_probs=78.6
Q ss_pred cCCCeeEEEEeCCCeEEEEcCCCce---------eeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECC---C---
Q psy13076 229 PSRPFRIITGSEDNTIAVFEGPPFK---------FKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGA---S--- 293 (423)
Q Consensus 229 ~~~~~~~~s~s~d~~i~~~~~~~~~---------~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~---~--- 293 (423)
|+.+ .+++.+.+|.|+--....+. ....+.. .+.+..+........++..+..|.++-+... .
T Consensus 5 ~~e~-~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 5 APED-VVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCC-EEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred cCCC-EEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 3344 36778888988875322111 1112222 3445555555556677777788887766532 1
Q ss_pred ---ccceecccccccCCCeEEEE-ECC--CCCeEEEEeCCCcEEEEecCCcce-----eeeeeeCceeEeeEEEEEecCc
Q psy13076 294 ---ADLVSELGNPAHKGGVYAVA-WKP--DGTQLLTASGDKTCKLWDIETKSA-----VSEFLMGNQVEDQQVSCLWQGD 362 (423)
Q Consensus 294 ---~~~~~~~~~~~~~~~i~~l~-~~~--~~~~l~s~s~d~~i~iwd~~~~~~-----i~~~~~~~~~~~~~~~~~~~g~ 362 (423)
|..+..+..-.....|.++. ... ++.+|+.++..|.++.-.+..... +..+.................+
T Consensus 83 ~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~~ 162 (370)
T 3l6v_A 83 NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDR 162 (370)
T ss_dssp TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSCC
T ss_pred ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCCc
Confidence 22111111001223455543 332 456899999999999887654322 1111111111111122223456
Q ss_pred EEEEEeCCCcEEEEecCC
Q psy13076 363 YLLTVSLSGFISYLDVNN 380 (423)
Q Consensus 363 ~l~~~~~~~~i~~~~~~~ 380 (423)
.++..+.+|.+..++...
T Consensus 163 ~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 163 DVLLFASNGKTVRFGEST 180 (370)
T ss_dssp EEEEEETTSEEEEEEGGG
T ss_pred eEEEEeCCCeEEEEEccc
Confidence 788889999988887643
No 358
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=50.37 E-value=1.6e+02 Score=27.26 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=20.9
Q ss_pred ceeEEEEeCCCC-eEEEecCCCceEEeecC
Q psy13076 49 PITALALSPDRG-TVFTGSHDGFITRWNAK 77 (423)
Q Consensus 49 ~V~~l~~~~~~~-~l~sg~~D~~i~vW~~~ 77 (423)
.-..|+|.|+++ .|+.+...|.|++++..
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 345789999985 44455678999998754
No 359
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=50.25 E-value=1.2e+02 Score=25.88 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=15.5
Q ss_pred CCCEEEEEEecC-----eEEEEECCCcc
Q psy13076 273 SGSHFASAGFDG-----KVFLYDGASAD 295 (423)
Q Consensus 273 ~g~~l~s~s~dg-----~i~vwd~~~~~ 295 (423)
+++.++.|+.++ .+.+||..+.+
T Consensus 206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 206 KGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 567777777543 46788877654
No 360
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=49.23 E-value=68 Score=22.73 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=30.4
Q ss_pred eeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEE
Q psy13076 50 ITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIR 116 (423)
Q Consensus 50 V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 116 (423)
-..+.+..||.+++.... + +|...+.. .+..+.+....+|+++++.......+|
T Consensus 21 ~~~L~~q~dGnLvl~~~~-~---vW~snt~~---------~~~~~~l~l~~dGNLVl~~~~~~~~vW 74 (111)
T 3mez_A 21 SAAFVMQGDCNLVLYNEA-G---GFQSNTHG---------RGVDCTLRLNNRGQLEIHSANSNTPVW 74 (111)
T ss_dssp TEEEEECTTSCEEEECSS-C---CEECCCTT---------SCSSCEEEECTTSCEEEECSSCSSCSE
T ss_pred CEEEEEccCCeEEEECCC-C---EEECCccc---------CCcCEEEEEcCCCcEEEEeCCCCEEEE
Confidence 346777788888775432 3 89876521 122344555667777766443322344
No 361
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=44.86 E-value=1.6e+02 Score=25.67 Aligned_cols=185 Identities=10% Similarity=0.096 Sum_probs=94.4
Q ss_pred EEEEeCCCeEEEEcCCCcee----eeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCC---------ccceeccc
Q psy13076 235 IITGSEDNTIAVFEGPPFKF----KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGAS---------ADLVSELG 301 (423)
Q Consensus 235 ~~s~s~d~~i~~~~~~~~~~----~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~---------~~~~~~~~ 301 (423)
+++.+.+|.|+--....+.. ...+.+ .+.+..+........++..+..|.++-+.... |..+..+.
T Consensus 8 ~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i 86 (323)
T 1wp5_A 8 IVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANII 86 (323)
T ss_dssp EEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTS
T ss_pred EEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhcc
Confidence 66778888887654322210 011222 23344444444556677777888876665321 22111111
Q ss_pred ccccCCCeEEE-EECC--CCCeEEEEeCCCcEEEEecCCcce------eeeeeeCceeEeeEEEEEecCcEEEEEeCCCc
Q psy13076 302 NPAHKGGVYAV-AWKP--DGTQLLTASGDKTCKLWDIETKSA------VSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGF 372 (423)
Q Consensus 302 ~~~~~~~i~~l-~~~~--~~~~l~s~s~d~~i~iwd~~~~~~------i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 372 (423)
.-.....|.++ ...+ ++.+|+.++.+|.++--.+..... +..+.................+.++..+.+|.
T Consensus 87 ~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~ 166 (323)
T 1wp5_A 87 PIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGY 166 (323)
T ss_dssp CCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSE
T ss_pred CCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCc
Confidence 00112345544 3432 256788999999999987753222 11111111111111222235677888999999
Q ss_pred EEEEecCCCC---C---ceEEec-cCCCceeEEEecCCCC-eEEEecCCCcEEEee
Q psy13076 373 ISYLDVNNPS---T---PIRVIK-GHNKPITALALSPDRG-TVFTGSHDGFITRWN 420 (423)
Q Consensus 373 i~~~~~~~~~---~---~~~~~~-~h~~~v~~i~~sp~~~-~l~s~s~D~~i~~W~ 420 (423)
+..++...-+ . -++.++ .-...|.++..-+++. .|+..+..|..+.-+
T Consensus 167 ~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~ 222 (323)
T 1wp5_A 167 ALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMK 222 (323)
T ss_dssp EEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEE
T ss_pred EEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEE
Confidence 8888765311 1 111111 1234466665444444 677777777766543
No 362
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=42.58 E-value=1.6e+02 Score=25.08 Aligned_cols=64 Identities=16% Similarity=0.376 Sum_probs=34.6
Q ss_pred CCCCEEEEEEec------CeEEEEECCCccc--eecccccccCCCeEEEEECCCCCeEEEEeCCC-----cEEEEecCCc
Q psy13076 272 PSGSHFASAGFD------GKVFLYDGASADL--VSELGNPAHKGGVYAVAWKPDGTQLLTASGDK-----TCKLWDIETK 338 (423)
Q Consensus 272 ~~g~~l~s~s~d------g~i~vwd~~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~-----~i~iwd~~~~ 338 (423)
.+++.++.|+.+ ..+.+||..+.+- +..+... ...-..+.+ +++.++.|+.++ .+.+||+.+.
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTP--RSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSC--CBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCC--cccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCC
Confidence 466777777653 3488899876542 2112111 111122222 567777776532 4678888775
Q ss_pred c
Q psy13076 339 S 339 (423)
Q Consensus 339 ~ 339 (423)
+
T Consensus 233 ~ 233 (318)
T 2woz_A 233 K 233 (318)
T ss_dssp C
T ss_pred e
Confidence 4
No 363
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=42.26 E-value=1e+02 Score=29.49 Aligned_cols=63 Identities=11% Similarity=0.186 Sum_probs=40.8
Q ss_pred cCeEEEEECCCCCEEEEEEe------------cCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeC
Q psy13076 263 RFVQAVRYSPSGSHFASAGF------------DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASG 326 (423)
Q Consensus 263 ~~i~~l~~s~~g~~l~s~s~------------dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~ 326 (423)
.....|.|+++|.+.+.... ...+..++..+++...-+.. .....++.++|+||++.|+.+-.
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~-P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC-CCCccccCCEECCCCCEEEEEEe
Confidence 34567999999987663321 12566777666664433321 12346899999999998887643
No 364
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=40.64 E-value=2.9e+02 Score=27.55 Aligned_cols=150 Identities=11% Similarity=0.068 Sum_probs=72.0
Q ss_pred ceEEEEEECCC-CCEEEEEccCCcEEEEEcCCCceeEEeeecCC------CCCeeEEEECCCCCe-EEEEEcCCc--eee
Q psy13076 132 CAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEHILKNEFHPI------GGPIKDIAWSPDNQR-MVVVGEGRE--RFG 201 (423)
Q Consensus 132 ~~i~~~~~sp~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~------~~~v~~v~~s~~~~~-~~~~~~~~~--~~~ 201 (423)
..|..+.++|. ...+..+...+.|...+ +.-..+....... ...+.+|++.|.... +.++..... ...
T Consensus 15 g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 15 GYITGIVAHPKTKDLLYARTDIGGAYRWD--AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp SCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CcEEEEEECCCCCCEEEEEecCCCEEEec--CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 47889999995 45555566566554443 2222222211111 235889999986433 333322110 002
Q ss_pred EEE-eecCCcceecccCC---------CcceeEEEEecCCCeeEEEEeCCCeEEEE-c-CCCceeeeecc---ccccCeE
Q psy13076 202 HVF-MSETGTSVGEISGQ---------SKPINSCDFKPSRPFRIITGSEDNTIAVF-E-GPPFKFKMTKQ---EHSRFVQ 266 (423)
Q Consensus 202 ~~~-~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~~~~~s~s~d~~i~~~-~-~~~~~~~~~~~---~~~~~i~ 266 (423)
.++ ..+.++....+... ...+..++++|..+..+..+...+.|..= | ...++...... .....+.
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~ 172 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWKSSDRAKTWTNVTSIPDAFTNGIGYT 172 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEEESSTTSSCEEETTSCCCCSTTTCEE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEEECCCCcccCCCccCccccCCCCCeE
Confidence 233 33344444333210 01345678887665556666544444332 2 12333221111 1124577
Q ss_pred EEEECCC-CCEEEEEEec
Q psy13076 267 AVRYSPS-GSHFASAGFD 283 (423)
Q Consensus 267 ~l~~s~~-g~~l~s~s~d 283 (423)
.+.++|. +..+..+..+
T Consensus 173 ~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 173 SVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEECTTSTTCEEEEESS
T ss_pred EEEECCCCCCEEEEEEcC
Confidence 8899885 3455555544
No 365
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=40.60 E-value=1.8e+02 Score=25.28 Aligned_cols=184 Identities=13% Similarity=0.081 Sum_probs=96.4
Q ss_pred EEEEeCCCeEEEEcCCCcee---------eeeccccccCeEEEEECCCCCEEEEEEecCeEEEEE---CCC------ccc
Q psy13076 235 IITGSEDNTIAVFEGPPFKF---------KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYD---GAS------ADL 296 (423)
Q Consensus 235 ~~s~s~d~~i~~~~~~~~~~---------~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd---~~~------~~~ 296 (423)
+++-+.+|.|+--....+.. ...+. ..+.+..+........++.-+..|.++... +.. |..
T Consensus 6 ~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~ 84 (327)
T 3uc1_A 6 VVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQH 84 (327)
T ss_dssp EEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEE
T ss_pred EEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEE
Confidence 56667777777553221110 01111 223444444444455666666777766554 222 221
Q ss_pred eecccccccCCCeEEE-EECC--CCCeEEEEeCCCcEEEEecCCccee-----eeeeeCceeEeeEEEEEecCcEEEEEe
Q psy13076 297 VSELGNPAHKGGVYAV-AWKP--DGTQLLTASGDKTCKLWDIETKSAV-----SEFLMGNQVEDQQVSCLWQGDYLLTVS 368 (423)
Q Consensus 297 ~~~~~~~~~~~~i~~l-~~~~--~~~~l~s~s~d~~i~iwd~~~~~~i-----~~~~~~~~~~~~~~~~~~~g~~l~~~~ 368 (423)
+..+..-.....|.++ ...+ +..+++..+.+|.++--.+...... ..+.................+.++..+
T Consensus 85 i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T 164 (327)
T 3uc1_A 85 VANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVS 164 (327)
T ss_dssp HHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEE
T ss_pred HHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEE
Confidence 1111111123345544 4442 5789999999999998876553221 111111111111222223567788899
Q ss_pred CCCcEEEEecCCCCCce--------E--EeccCCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076 369 LSGFISYLDVNNPSTPI--------R--VIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420 (423)
Q Consensus 369 ~~~~i~~~~~~~~~~~~--------~--~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~ 420 (423)
..|.+..+....++.+. . .+ .-...|.++...+++..|+..+..|.++.=.
T Consensus 165 ~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~ 225 (327)
T 3uc1_A 165 ANGQSIRFSATDEALRPMGRATSGVQGMRF-NIDDRLLSLNVVREGTYLLVATSGGYAKRTA 225 (327)
T ss_dssp TTSEEEEEECCTTTSCCCCTTSBCEESSCC-CTTCCEEEEEECCTTCEEEEEETTSEEEEEE
T ss_pred CCCeEEEEECcccccCcCCcCCCCeeeecC-CCCCEEEEEEEECCCCEEEEEeCCCcEEEEE
Confidence 99999888776211110 0 01 1234577776666677888888889887643
No 366
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=35.29 E-value=2e+02 Score=24.22 Aligned_cols=164 Identities=15% Similarity=0.066 Sum_probs=78.8
Q ss_pred CCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCe
Q psy13076 241 DNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQ 320 (423)
Q Consensus 241 d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 320 (423)
|+.++.|-...+-..-........|..++.... ..+.-. ||.|+.|-......+-. .. .....|..++...+...
T Consensus 80 ~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~-~~-~~~~~i~~i~~G~~~~~ 154 (282)
T 3qhy_B 80 DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTV-PA-EAQSGVTALDGGVYTAL 154 (282)
T ss_dssp TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSC-CG-GGGSSEEEEEECSSEEE
T ss_pred CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCC-Cc-cCCCCeEEEEcccCEEE
Confidence 788888854322111011112235666655433 444445 99999997654322211 10 12345777766543322
Q ss_pred EEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEe
Q psy13076 321 LLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALAL 400 (423)
Q Consensus 321 l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~ 400 (423)
+ -. |+.|..|-......+..- .........+++ -....++. .+|.++.|=.....+.- ....-...|..|+-
T Consensus 155 ~--l~-~G~v~~wG~n~~gqlg~p-~~~~~~v~~i~~--G~~hs~al-~~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~ 226 (282)
T 3qhy_B 155 A--VK-NGGVIAWGDNYFGQTTVP-AEAQSGVDDVAG--GIFHSLAL-KDGKVIAWGDNRYKQTT-VPTEALSGVSAIAS 226 (282)
T ss_dssp E--EE-TTEEEEEECCTTSTTSCC-GGGGSSEEEEEE--CSSEEEEE-ETTEEEEEECCTTSTTC-CCGGGGSSCCEEEE
T ss_pred E--EE-CCEEEEecCCCCCCCCCc-eecCCCeEEEEe--cCCEEEEE-ECCeEEEEECCCCCCCC-CCcccCCCceEEEc
Confidence 2 23 799999976543222110 000111222222 22333334 58999998665432211 11111235777775
Q ss_pred cCCCCeEEEecCCCcEEEee
Q psy13076 401 SPDRGTVFTGSHDGFITRWN 420 (423)
Q Consensus 401 sp~~~~l~s~s~D~~i~~W~ 420 (423)
...-..+++ ||.+..|-
T Consensus 227 G~~h~~al~---~g~v~~wG 243 (282)
T 3qhy_B 227 GEWYSLALK---NGKVIAWG 243 (282)
T ss_dssp CSSCEEEEE---TTEEEEES
T ss_pred CCCEEEEEE---CCEEEEec
Confidence 544333333 88888884
No 367
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=34.27 E-value=2.2e+02 Score=24.40 Aligned_cols=186 Identities=14% Similarity=0.168 Sum_probs=94.8
Q ss_pred EEEEeCCCeEEEEcCCCceeee---------eccccccCeEEEEECCCCCEEEEEEecCeEEEEECC---C------ccc
Q psy13076 235 IITGSEDNTIAVFEGPPFKFKM---------TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGA---S------ADL 296 (423)
Q Consensus 235 ~~s~s~d~~i~~~~~~~~~~~~---------~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~---~------~~~ 296 (423)
+++.+.+|.|+--....+.... .+.+ .+.+..+........++..+..|.++-+... . |..
T Consensus 6 ~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~ 84 (307)
T 1zi0_A 6 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRP 84 (307)
T ss_dssp EEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEE
T ss_pred EEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeE
Confidence 5667888888766554433211 1111 2334344444445567777778887666532 1 221
Q ss_pred eecccccccCCCeEEEEE-C--CCCCeEEEEeCCCcEEEEecCCcce-----eeeeeeCceeEeeEEEEEecCcEEEEEe
Q psy13076 297 VSELGNPAHKGGVYAVAW-K--PDGTQLLTASGDKTCKLWDIETKSA-----VSEFLMGNQVEDQQVSCLWQGDYLLTVS 368 (423)
Q Consensus 297 ~~~~~~~~~~~~i~~l~~-~--~~~~~l~s~s~d~~i~iwd~~~~~~-----i~~~~~~~~~~~~~~~~~~~g~~l~~~~ 368 (423)
+..+..-.....|.++.. . +++.+++..+..|.++--.+..... +..+.................+.++..+
T Consensus 85 i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T 164 (307)
T 1zi0_A 85 IVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFS 164 (307)
T ss_dssp GGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCEEEEEE
T ss_pred hhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCEEEEEC
Confidence 111111112234555533 2 3456788899999999887653221 1111111111111122223456788889
Q ss_pred CCCcEEEEecCCCCCc------eEEec-cCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076 369 LSGFISYLDVNNPSTP------IRVIK-GHNKPITALALSPDRGTVFTGSHDGFITRWNA 421 (423)
Q Consensus 369 ~~~~i~~~~~~~~~~~------~~~~~-~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~ 421 (423)
.+|.+..++..+-+.. ++.+. .-...|.++...+++..|++.+..|.++..++
T Consensus 165 ~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~ 224 (307)
T 1zi0_A 165 AEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAV 224 (307)
T ss_dssp TTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECG
T ss_pred CCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEH
Confidence 9999888876431110 11111 12345767766556667888888888877654
No 368
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=34.11 E-value=2.5e+02 Score=24.84 Aligned_cols=153 Identities=12% Similarity=0.057 Sum_probs=71.2
Q ss_pred CCCeeEEEECC-CCCeEEEEEcCC-ceeeEEEeecCCcceecccC--------------CCcceeEEEEecCC-CeeEEE
Q psy13076 175 GGPIKDIAWSP-DNQRMVVVGEGR-ERFGHVFMSETGTSVGEISG--------------QSKPINSCDFKPSR-PFRIIT 237 (423)
Q Consensus 175 ~~~v~~v~~s~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------------~~~~i~~~~~~~~~-~~~~~s 237 (423)
...|.+|++.| +...+.+++... ...+.....+.+.....+.. ....|.++.+.|.. +..+..
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 45689999998 233344433221 11112222333443332221 11246678887643 334666
Q ss_pred EeCCCeEEEEcCC--Cceeeeecc----------------ccccCeEEEEECCC-CCEEEEEEecCeEEEEECCCcccee
Q psy13076 238 GSEDNTIAVFEGP--PFKFKMTKQ----------------EHSRFVQAVRYSPS-GSHFASAGFDGKVFLYDGASADLVS 298 (423)
Q Consensus 238 ~s~d~~i~~~~~~--~~~~~~~~~----------------~~~~~i~~l~~s~~-g~~l~s~s~dg~i~vwd~~~~~~~~ 298 (423)
+...+.|...+.. .++...... .....+.++.++|. ...+..+..++.|...+ ..++...
T Consensus 134 g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~ 212 (394)
T 3b7f_A 134 GTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWK 212 (394)
T ss_dssp EEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCE
T ss_pred EecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCce
Confidence 6666666665422 222211110 01234778999884 34445555455444332 1122222
Q ss_pred cccc--c-cc--------CCCeEEEEECCC-CCeEEEEeCCC
Q psy13076 299 ELGN--P-AH--------KGGVYAVAWKPD-GTQLLTASGDK 328 (423)
Q Consensus 299 ~~~~--~-~~--------~~~i~~l~~~~~-~~~l~s~s~d~ 328 (423)
.+.. . .+ ...+.+++++|+ ...|..+...+
T Consensus 213 ~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 213 PLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp ECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred ECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 2110 0 00 124789999986 35555565544
No 369
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=30.65 E-value=2.8e+02 Score=24.45 Aligned_cols=100 Identities=9% Similarity=0.025 Sum_probs=46.3
Q ss_pred CeeEEEECCC-CCeEEEEEcCCceeeEEEeecCCcceecccCC-------------CcceeEEEEecCCCeeEEEEeCCC
Q psy13076 177 PIKDIAWSPD-NQRMVVVGEGRERFGHVFMSETGTSVGEISGQ-------------SKPINSCDFKPSRPFRIITGSEDN 242 (423)
Q Consensus 177 ~v~~v~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~~~~s~s~d~ 242 (423)
.+.+|.+.|. ...+.++.... +.....+.++....+... ...+..+.+.|..+..+..+...+
T Consensus 178 ~i~~i~~d~~~~~~l~vg~~~g---gl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGMSSG---GVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp EEEEEEECTTCTTCEEEEEETB---EEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred ceeEEEECCCCCCEEEEEECCC---CEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 5778999984 34444433221 122223334433332210 134788888887544466665544
Q ss_pred eEEEEcCCCceeeeecccc-c---cCeEEEEECCC-CCEEEEE
Q psy13076 243 TIAVFEGPPFKFKMTKQEH-S---RFVQAVRYSPS-GSHFASA 280 (423)
Q Consensus 243 ~i~~~~~~~~~~~~~~~~~-~---~~i~~l~~s~~-g~~l~s~ 280 (423)
|...+............. . ..+..++++|. ...+..+
T Consensus 255 -l~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 255 -IYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp -EEEEETTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred -EEEeCCCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence 444432222211111111 1 34567888863 3334444
No 370
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=27.43 E-value=2.9e+02 Score=23.56 Aligned_cols=175 Identities=6% Similarity=-0.021 Sum_probs=88.5
Q ss_pred EECCCCCEEEEEccC--------------CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEE---cCCcee
Q psy13076 138 KYSPSGFYIASGDIS--------------GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVG---EGRERF 200 (423)
Q Consensus 138 ~~sp~~~~l~s~~~d--------------~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~---~~~~~~ 200 (423)
-++++|.+++-+... ..|+..++...+.... .. . ....|+++++.++.+. .+...
T Consensus 59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l---~~--~--~~~~~s~~g~~Iy~~~~~~~~~~~- 130 (302)
T 3s25_A 59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVL---DP--D--PCIYASLIGNYIYYLHYDTQTATS- 130 (302)
T ss_dssp EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEE---EC--S--CEEEEEEETTEEEEEEESSSSCEE-
T ss_pred eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEe---ec--C--CccEEEEeCCEEEEEeecCCCCce-
Confidence 457888888766543 3466666654432211 11 1 2336788888887765 22222
Q ss_pred eEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEE
Q psy13076 201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASA 280 (423)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~ 280 (423)
...... .+.....+..+.. .+++|.+..+..+......|...+............ ... ..+.|++++|+-.
T Consensus 131 Iy~~~~-dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t 201 (302)
T 3s25_A 131 LYRIRI-DGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYM 201 (302)
T ss_dssp EEEEET-TSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEE
T ss_pred EEEEEC-CCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEE
Confidence 111222 2333333333322 345677776555544456777776554332222221 112 2356999988776
Q ss_pred EecC--eEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeC--CCcEEEEecC
Q psy13076 281 GFDG--KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASG--DKTCKLWDIE 336 (423)
Q Consensus 281 s~dg--~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~--d~~i~iwd~~ 336 (423)
..++ .|..-++.... ...+. ...+ ..|+|++++|.-+.. ...|..-++.
T Consensus 202 ~~~~~~~I~~~~ldG~~-~~~Lt----~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 202 DVNRDNAIVHVNINNPN-PVVLT----EANI--EHYNVYGSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp EGGGTTEEEEECSSSCC-CEECS----CSCE--EEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred EcCCCcEEEEEECCCCC-eEEEe----CCCc--ceEEECCCEEEEEECCCCcEEEEEECC
Confidence 6543 56665554433 23332 1223 347888888876533 2344444443
No 371
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=24.88 E-value=95 Score=29.43 Aligned_cols=69 Identities=9% Similarity=-0.018 Sum_probs=41.7
Q ss_pred CeEEEEECCCCC--EEEEEEecCeEEEEECCCc----cceecccccccCCCeE-EEEECCCCCeEEEEeCCCcEEE
Q psy13076 264 FVQAVRYSPSGS--HFASAGFDGKVFLYDGASA----DLVSELGNPAHKGGVY-AVAWKPDGTQLLTASGDKTCKL 332 (423)
Q Consensus 264 ~i~~l~~s~~g~--~l~s~s~dg~i~vwd~~~~----~~~~~~~~~~~~~~i~-~l~~~~~~~~l~s~s~d~~i~i 332 (423)
..++++....+. .+..|+.+|.|+-..+... ..+.++........|. .|.+++++.+|..++.++.++|
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 356666655444 4677888998764433221 1222222111234564 8999999999999887765554
No 372
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=24.57 E-value=3.1e+02 Score=23.01 Aligned_cols=144 Identities=14% Similarity=0.117 Sum_probs=78.2
Q ss_pred CCCEEEEEEecCeEEEEECCCcc----ceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcce-------e
Q psy13076 273 SGSHFASAGFDGKVFLYDGASAD----LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSA-------V 341 (423)
Q Consensus 273 ~g~~l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~-------i 341 (423)
++.+++..+.+|.++-..+.... -...+... -...+..+........++..+..|.+..+....-.. +
T Consensus 79 ~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv 157 (276)
T 3no0_A 79 FGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGV 157 (276)
T ss_dssp SCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCE
T ss_pred CCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCE
Confidence 46789999999999988765432 11111111 134565665555666788888999988887543211 1
Q ss_pred eeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCC------ceEEeccCCCceeEEEecCCCCeEEEecCCCc
Q psy13076 342 SEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPST------PIRVIKGHNKPITALALSPDRGTVFTGSHDGF 415 (423)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~ 415 (423)
.-+..........+....+++.++..+..|.++...+..-.. -+..+ .-.+.+..+....++..++..+.+|.
T Consensus 158 ~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~ 236 (276)
T 3no0_A 158 QGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGK 236 (276)
T ss_dssp ECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSC
T ss_pred EEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCe
Confidence 111111111222233334567899999999998887643211 11222 12334554443333334555555666
Q ss_pred EEE
Q psy13076 416 ITR 418 (423)
Q Consensus 416 i~~ 418 (423)
+..
T Consensus 237 ~ir 239 (276)
T 3no0_A 237 AFY 239 (276)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 373
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=23.82 E-value=1.8e+02 Score=27.10 Aligned_cols=68 Identities=15% Similarity=0.085 Sum_probs=41.5
Q ss_pred eEEEEECC----CCC--EEEEEEecCeEEEEECC-Cc-------cceecccccccCCCeEEEEECCCCCeEEEEeCCCcE
Q psy13076 265 VQAVRYSP----SGS--HFASAGFDGKVFLYDGA-SA-------DLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTC 330 (423)
Q Consensus 265 i~~l~~s~----~g~--~l~s~s~dg~i~vwd~~-~~-------~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i 330 (423)
.++++... ++. .+..|+.+|.|+-.-.. .. ..+.++..-.....|..|.+++++.+|..++.++.+
T Consensus 406 lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~ 485 (495)
T 1q47_A 406 FTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVA 485 (495)
T ss_dssp EEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEE
T ss_pred eEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEE
Confidence 46665543 354 36778889987533222 11 122233221234678999999999999999988766
Q ss_pred EE
Q psy13076 331 KL 332 (423)
Q Consensus 331 ~i 332 (423)
+|
T Consensus 486 ~v 487 (495)
T 1q47_A 486 QL 487 (495)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 374
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=23.09 E-value=3.7e+02 Score=23.30 Aligned_cols=179 Identities=12% Similarity=0.144 Sum_probs=89.6
Q ss_pred eEEEEeCCCeEEEEcCCCceee-------eeccccccCeEEEEECCCCCEEEEEEecCeEEEEECC--Cccce-------
Q psy13076 234 RIITGSEDNTIAVFEGPPFKFK-------MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGA--SADLV------- 297 (423)
Q Consensus 234 ~~~s~s~d~~i~~~~~~~~~~~-------~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~--~~~~~------- 297 (423)
.++..+.+|.++--....+... ..+.. .+.+..+........++..+..|.+..+... .-...
T Consensus 111 ~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv 189 (327)
T 3uc1_A 111 YLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGV 189 (327)
T ss_dssp EEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCE
T ss_pred EEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCe
Confidence 4778889999988764433221 12223 2344444444455678888899999888766 21111
Q ss_pred ecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcce-------eeeeeeCc-eeEeeEEEEEecCcEEEEEeC
Q psy13076 298 SELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSA-------VSEFLMGN-QVEDQQVSCLWQGDYLLTVSL 369 (423)
Q Consensus 298 ~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~-------i~~~~~~~-~~~~~~~~~~~~g~~l~~~~~ 369 (423)
.-+.. .....|.++..-+++.+|+..+..|.++.-.+..... +..+.... .............+.++..+.
T Consensus 190 ~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~ 268 (327)
T 3uc1_A 190 QGMRF-NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTS 268 (327)
T ss_dssp ESSCC-CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEG
T ss_pred eeecC-CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcC
Confidence 00111 1234566666666677899999999998887643222 22221111 111111112224567777888
Q ss_pred CCcEEEEecCCCCC---c---eEEec-cCCCceeEEEecC-CCCeEEEecCCC
Q psy13076 370 SGFISYLDVNNPST---P---IRVIK-GHNKPITALALSP-DRGTVFTGSHDG 414 (423)
Q Consensus 370 ~~~i~~~~~~~~~~---~---~~~~~-~h~~~v~~i~~sp-~~~~l~s~s~D~ 414 (423)
+|.+..++...-.. . ++.++ ...+.|-+++..+ +...+.+.+.+|
T Consensus 269 ~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~~~~~g 321 (327)
T 3uc1_A 269 GGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDANG 321 (327)
T ss_dssp GGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC-------------
T ss_pred CCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEEEecCC
Confidence 88888876643111 0 11111 1234566666544 334566666554
No 375
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=22.52 E-value=3.3e+02 Score=22.56 Aligned_cols=145 Identities=13% Similarity=0.081 Sum_probs=72.7
Q ss_pred EEEEeCCCeEEEEcCCCcee-eeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCC-------ccceecccccccC
Q psy13076 235 IITGSEDNTIAVFEGPPFKF-KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGAS-------ADLVSELGNPAHK 306 (423)
Q Consensus 235 ~~s~s~d~~i~~~~~~~~~~-~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~-------~~~~~~~~~~~~~ 306 (423)
.++.+.+|.|+--....+.. ...+... +.+..+........++..+..|.++-+.... |..+..+..-...
T Consensus 5 ~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~~ 83 (256)
T 1zvt_A 5 TIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPG 83 (256)
T ss_dssp EEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCTT
T ss_pred EEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCCC
Confidence 44556777776554333211 1112222 2333333333344566667788877665321 2211111111123
Q ss_pred CCeEEEEECCCCCeEEEEeCCCcEEEEecCCcce-----eeeeeeCceeEeeEEEEE-ecCcEEEEEeCCCcEEEEecCC
Q psy13076 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSA-----VSEFLMGNQVEDQQVSCL-WQGDYLLTVSLSGFISYLDVNN 380 (423)
Q Consensus 307 ~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~-----i~~~~~~~~~~~~~~~~~-~~g~~l~~~~~~~~i~~~~~~~ 380 (423)
..|.++....++.+|+.++..|.++...+..... .................. ..++.++..+.+|.+..++...
T Consensus 84 e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~e 163 (256)
T 1zvt_A 84 ATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSD 163 (256)
T ss_dssp CCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHH
Confidence 4566664434567788899999999988754321 111111111111111122 2456788999999988887754
No 376
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=20.49 E-value=2.1e+02 Score=27.92 Aligned_cols=61 Identities=16% Similarity=0.131 Sum_probs=38.0
Q ss_pred CCCC--EEEEEEecCeEE-EEECCCcc-------ceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEE
Q psy13076 272 PSGS--HFASAGFDGKVF-LYDGASAD-------LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKL 332 (423)
Q Consensus 272 ~~g~--~l~s~s~dg~i~-vwd~~~~~-------~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~i 332 (423)
++|+ .+..|+.+|.|+ +....... .+.++..-.....|..|.++++.++|..++.++.++|
T Consensus 425 ~~g~ytVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 425 EDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp SSCEEEEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred CCCcEEEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 4554 467788999875 32211111 1222221123557889999999999999998887665
Done!