Query psy13077
Match_columns 630
No_of_seqs 176 out of 714
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 18:50:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13077.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13077hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK04210 phosphoenolpyruvate c 100.0 6E-215 1E-219 1733.2 55.3 590 27-630 7-600 (601)
2 PF00821 PEPCK: Phosphoenolpyr 100.0 2E-215 4E-220 1742.5 42.9 583 35-630 1-586 (586)
3 KOG3749|consensus 100.0 5E-213 1E-217 1666.1 47.1 614 14-630 25-639 (640)
4 cd00819 PEPCK_GTP Phosphoenolp 100.0 7E-211 1E-215 1699.2 53.5 575 33-624 1-579 (579)
5 COG1274 PckA Phosphoenolpyruva 100.0 9E-209 2E-213 1643.2 50.2 599 18-630 5-608 (608)
6 cd01919 PEPCK Phosphoenolpyruv 100.0 2E-125 5E-130 1035.1 40.7 493 47-609 1-500 (515)
7 PLN02597 phosphoenolpyruvate c 100.0 5E-106 1E-110 873.9 39.0 489 41-619 27-550 (555)
8 COG1866 PckA Phosphoenolpyruva 100.0 1E-106 2E-111 857.9 32.3 472 47-609 19-510 (529)
9 cd00484 PEPCK_ATP Phosphoenolp 100.0 1E-104 2E-109 864.5 39.4 481 48-619 2-506 (508)
10 PTZ00311 phosphoenolpyruvate c 100.0 4E-104 8E-109 864.1 40.4 488 40-619 36-554 (561)
11 TIGR00224 pckA phosphoenolpyru 100.0 2E-103 4E-108 853.1 40.4 487 40-619 12-527 (532)
12 PRK09344 phosphoenolpyruvate c 100.0 1.1E-93 2.3E-98 783.5 37.8 489 40-619 10-521 (526)
13 PF01293 PEPCK_ATP: Phosphoeno 100.0 5.4E-90 1.2E-94 749.6 25.8 444 47-581 2-466 (466)
14 cd00820 PEPCK_HprK Phosphoenol 99.6 5.1E-17 1.1E-21 146.9 2.9 70 266-342 1-70 (107)
15 cd01918 HprK_C HprK/P, the bif 96.4 0.0019 4.2E-08 62.2 2.5 60 268-336 3-62 (149)
16 COG3839 MalK ABC-type sugar tr 94.9 0.018 3.9E-07 62.3 3.1 21 280-302 27-47 (338)
17 COG4136 ABC-type uncharacteriz 94.9 0.014 3.1E-07 57.2 2.0 33 268-302 12-46 (213)
18 COG3842 PotA ABC-type spermidi 94.8 0.022 4.9E-07 61.9 3.3 37 280-319 29-69 (352)
19 PF07475 Hpr_kinase_C: HPr Ser 94.2 0.031 6.8E-07 55.2 2.6 61 268-336 7-67 (171)
20 COG4619 ABC-type uncharacteriz 93.9 0.05 1.1E-06 54.3 3.3 21 280-302 27-47 (223)
21 PTZ00301 uridine kinase; Provi 93.8 0.041 8.9E-07 55.6 2.6 17 286-302 5-21 (210)
22 COG1116 TauB ABC-type nitrate/ 93.7 0.038 8.3E-07 57.4 2.4 21 280-302 27-47 (248)
23 COG4525 TauB ABC-type taurine 93.7 0.038 8.2E-07 56.3 2.2 22 280-303 29-50 (259)
24 cd02023 UMPK Uridine monophosp 93.5 0.03 6.5E-07 54.7 1.1 33 287-319 2-35 (198)
25 smart00382 AAA ATPases associa 93.4 0.047 1E-06 47.1 2.0 19 282-302 2-20 (148)
26 PF13207 AAA_17: AAA domain; P 93.3 0.044 9.5E-07 48.7 1.7 14 289-302 4-17 (121)
27 COG1117 PstB ABC-type phosphat 92.9 0.059 1.3E-06 55.5 2.2 20 280-301 31-50 (253)
28 COG1136 SalX ABC-type antimicr 92.8 0.065 1.4E-06 55.1 2.3 21 280-302 29-49 (226)
29 TIGR00235 udk uridine kinase. 92.8 0.056 1.2E-06 53.5 1.8 21 280-302 4-24 (207)
30 COG0572 Udk Uridine kinase [Nu 92.5 0.065 1.4E-06 54.8 1.8 38 282-319 6-44 (218)
31 COG1126 GlnQ ABC-type polar am 92.4 0.081 1.7E-06 54.5 2.3 21 280-302 26-46 (240)
32 PF00485 PRK: Phosphoribulokin 92.3 0.068 1.5E-06 52.4 1.7 16 287-302 2-17 (194)
33 COG1125 OpuBA ABC-type proline 92.3 0.078 1.7E-06 55.9 2.2 21 280-302 25-45 (309)
34 PRK00300 gmk guanylate kinase; 92.1 0.093 2E-06 51.3 2.3 22 280-303 3-24 (205)
35 PRK08233 hypothetical protein; 91.9 0.086 1.9E-06 50.0 1.8 18 285-302 4-21 (182)
36 COG1127 Ttg2A ABC-type transpo 91.8 0.14 3E-06 53.4 3.4 37 280-319 32-72 (263)
37 cd03238 ABC_UvrA The excision 91.8 0.11 2.3E-06 51.1 2.4 21 280-302 19-39 (176)
38 PF13671 AAA_33: AAA domain; P 91.7 0.091 2E-06 47.9 1.7 16 285-302 2-17 (143)
39 TIGR00679 hpr-ser Hpr(Ser) kin 91.7 0.13 2.8E-06 55.1 3.0 93 230-336 102-195 (304)
40 TIGR02237 recomb_radB DNA repa 91.7 0.1 2.2E-06 51.2 2.1 21 280-302 10-30 (209)
41 PRK06696 uridine kinase; Valid 91.6 0.1 2.2E-06 52.4 2.1 21 282-302 20-40 (223)
42 PRK05480 uridine/cytidine kina 91.6 0.11 2.3E-06 51.4 2.1 19 285-303 7-25 (209)
43 TIGR02322 phosphon_PhnN phosph 91.6 0.1 2.3E-06 49.9 2.0 18 283-302 2-19 (179)
44 COG4175 ProV ABC-type proline/ 91.5 0.12 2.6E-06 55.9 2.5 63 255-320 22-93 (386)
45 COG0529 CysC Adenylylsulfate k 91.3 0.11 2.4E-06 52.0 2.0 35 280-316 21-58 (197)
46 PRK09825 idnK D-gluconate kina 91.2 0.13 2.7E-06 50.4 2.2 20 282-303 3-22 (176)
47 PRK14738 gmk guanylate kinase; 91.1 0.14 2.9E-06 51.1 2.4 19 282-302 13-31 (206)
48 PRK00131 aroK shikimate kinase 91.1 0.13 2.9E-06 48.0 2.3 20 281-302 3-22 (175)
49 PRK08118 topology modulation p 91.1 0.12 2.6E-06 50.0 1.9 17 284-302 3-19 (167)
50 TIGR03263 guanyl_kin guanylate 91.1 0.13 2.8E-06 49.1 2.0 19 282-302 1-19 (180)
51 COG4181 Predicted ABC-type tra 91.0 0.15 3.2E-06 51.3 2.4 45 280-329 34-82 (228)
52 PF13555 AAA_29: P-loop contai 91.0 0.17 3.6E-06 42.2 2.4 19 280-300 21-39 (62)
53 COG1124 DppF ABC-type dipeptid 90.8 0.14 3.1E-06 53.3 2.2 23 279-303 30-52 (252)
54 PRK10078 ribose 1,5-bisphospho 90.7 0.14 3.1E-06 49.8 2.0 20 282-303 2-21 (186)
55 cd03270 ABC_UvrA_I The excisio 90.7 0.15 3.2E-06 51.5 2.2 22 279-302 18-39 (226)
56 PRK11607 potG putrescine trans 90.6 0.21 4.5E-06 54.7 3.4 28 280-309 43-74 (377)
57 PRK05541 adenylylsulfate kinas 90.5 0.17 3.8E-06 48.4 2.4 21 280-302 5-25 (176)
58 cd01394 radB RadB. The archaea 90.5 0.15 3.3E-06 50.4 2.1 21 280-302 17-37 (218)
59 PRK07261 topology modulation p 90.5 0.15 3.2E-06 49.4 1.9 17 284-302 2-18 (171)
60 TIGR02673 FtsE cell division A 90.4 0.24 5.3E-06 48.8 3.4 22 280-303 26-47 (214)
61 TIGR03864 PQQ_ABC_ATP ABC tran 90.4 0.24 5.1E-06 49.8 3.4 22 280-303 25-46 (236)
62 cd00009 AAA The AAA+ (ATPases 90.3 0.19 4E-06 44.1 2.3 21 280-302 17-37 (151)
63 PRK09270 nucleoside triphospha 90.3 0.13 2.8E-06 51.9 1.4 21 282-302 31-51 (229)
64 PF01583 APS_kinase: Adenylyls 90.3 0.15 3.3E-06 49.6 1.7 35 282-318 2-39 (156)
65 cd00227 CPT Chloramphenicol (C 90.2 0.17 3.8E-06 48.6 2.2 19 282-302 2-20 (175)
66 COG4618 ArpD ABC-type protease 90.0 0.12 2.7E-06 58.6 1.0 70 280-371 360-434 (580)
67 PRK06547 hypothetical protein; 89.9 0.19 4.1E-06 49.2 2.1 21 282-302 13-33 (172)
68 cd01123 Rad51_DMC1_radA Rad51_ 89.9 0.19 4.1E-06 50.0 2.2 21 280-302 17-37 (235)
69 PF00005 ABC_tran: ABC transpo 89.7 0.19 4.1E-06 45.7 1.8 21 280-302 9-29 (137)
70 PRK05428 HPr kinase/phosphoryl 89.7 0.26 5.6E-06 52.9 3.1 92 229-333 101-192 (308)
71 COG0396 sufC Cysteine desulfur 89.7 0.23 5E-06 51.5 2.6 30 280-311 28-57 (251)
72 TIGR03878 thermo_KaiC_2 KaiC d 89.6 0.18 3.9E-06 52.2 1.8 21 280-302 34-54 (259)
73 PF05496 RuvB_N: Holliday junc 89.5 0.17 3.7E-06 52.3 1.5 18 284-303 52-69 (233)
74 cd03258 ABC_MetN_methionine_tr 89.4 0.33 7.2E-06 48.5 3.5 21 280-302 29-49 (233)
75 cd01393 recA_like RecA is a b 89.2 0.23 5.1E-06 49.1 2.2 21 280-302 17-37 (226)
76 PRK10575 iron-hydroxamate tran 89.1 0.34 7.3E-06 49.8 3.4 22 280-303 35-56 (265)
77 cd03255 ABC_MJ0796_Lo1CDE_FtsE 89.1 0.25 5.4E-06 48.8 2.3 22 280-303 28-49 (218)
78 cd03256 ABC_PhnC_transporter A 89.1 0.25 5.3E-06 49.5 2.3 22 280-303 25-46 (241)
79 COG4608 AppF ABC-type oligopep 89.1 0.33 7.1E-06 51.2 3.3 37 280-319 37-77 (268)
80 PRK11308 dppF dipeptide transp 89.0 0.35 7.5E-06 51.9 3.5 22 280-303 39-60 (327)
81 TIGR00960 3a0501s02 Type II (G 89.0 0.26 5.6E-06 48.7 2.4 22 280-303 27-48 (216)
82 cd03226 ABC_cobalt_CbiO_domain 89.0 0.26 5.6E-06 48.4 2.3 22 280-303 24-45 (205)
83 PRK03846 adenylylsulfate kinas 88.9 0.25 5.4E-06 48.6 2.2 23 279-303 21-43 (198)
84 TIGR03238 dnd_assoc_3 dnd syst 88.9 0.24 5.3E-06 56.1 2.3 21 280-302 30-50 (504)
85 PRK08533 flagellar accessory p 88.9 0.25 5.3E-06 50.4 2.2 21 280-302 22-42 (230)
86 PRK14250 phosphate ABC transpo 88.9 0.37 8.1E-06 48.7 3.4 22 280-303 27-48 (241)
87 TIGR02315 ABC_phnC phosphonate 88.8 0.27 5.9E-06 49.4 2.4 22 280-303 26-47 (243)
88 cd03225 ABC_cobalt_CbiO_domain 88.7 0.27 5.7E-06 48.4 2.2 21 280-302 25-45 (211)
89 COG1123 ATPase components of v 88.7 0.38 8.3E-06 55.1 3.7 36 280-318 315-354 (539)
90 PF00004 AAA: ATPase family as 88.7 0.24 5.1E-06 44.0 1.7 15 286-302 2-16 (132)
91 PRK11545 gntK gluconate kinase 88.6 0.17 3.6E-06 48.7 0.7 12 291-302 2-13 (163)
92 PRK10895 lipopolysaccharide AB 88.6 0.39 8.5E-06 48.3 3.4 21 280-302 27-47 (241)
93 PRK08084 DNA replication initi 88.6 0.27 5.8E-06 50.1 2.2 21 280-302 43-63 (235)
94 cd03298 ABC_ThiQ_thiamine_tran 88.6 0.41 9E-06 47.1 3.5 21 280-302 22-42 (211)
95 PLN02348 phosphoribulokinase 88.5 0.26 5.7E-06 54.5 2.2 21 282-302 47-67 (395)
96 TIGR02868 CydC thiol reductant 88.5 0.23 5E-06 55.8 1.9 22 280-303 359-380 (529)
97 TIGR01313 therm_gnt_kin carboh 88.5 0.19 4E-06 47.4 0.9 13 291-303 5-17 (163)
98 PRK07667 uridine kinase; Provi 88.4 0.29 6.2E-06 48.2 2.2 21 282-302 15-35 (193)
99 cd03257 ABC_NikE_OppD_transpor 88.4 0.3 6.4E-06 48.4 2.3 22 280-303 29-50 (228)
100 PF13238 AAA_18: AAA domain; P 88.4 0.24 5.2E-06 43.8 1.5 13 290-302 4-16 (129)
101 PRK00889 adenylylsulfate kinas 88.4 0.28 6.2E-06 46.9 2.1 37 280-318 2-41 (175)
102 TIGR01166 cbiO cobalt transpor 88.3 0.31 6.7E-06 47.3 2.4 21 280-302 16-36 (190)
103 cd03260 ABC_PstB_phosphate_tra 88.3 0.31 6.6E-06 48.6 2.4 21 280-302 24-44 (227)
104 cd03235 ABC_Metallic_Cations A 88.3 0.31 6.7E-06 48.1 2.3 22 280-303 23-44 (213)
105 cd02028 UMPK_like Uridine mono 88.3 0.22 4.8E-06 48.6 1.3 16 287-302 2-17 (179)
106 cd00983 recA RecA is a bacter 88.2 0.27 5.8E-06 53.1 2.0 21 280-302 53-73 (325)
107 PRK06762 hypothetical protein; 88.2 0.27 5.9E-06 46.5 1.8 16 285-302 5-20 (166)
108 TIGR01186 proV glycine betaine 88.2 0.38 8.2E-06 52.6 3.2 21 280-302 17-37 (363)
109 cd03252 ABCC_Hemolysin The ABC 88.2 0.42 9.2E-06 47.9 3.3 21 280-302 26-46 (237)
110 cd03269 ABC_putative_ATPase Th 88.2 0.31 6.8E-06 47.9 2.3 22 280-303 24-45 (210)
111 cd03261 ABC_Org_Solvent_Resist 88.2 0.31 6.7E-06 48.9 2.3 21 280-302 24-44 (235)
112 cd02025 PanK Pantothenate kina 88.2 0.21 4.6E-06 50.5 1.1 16 287-302 2-17 (220)
113 cd03262 ABC_HisP_GlnQ_permease 88.1 0.32 7E-06 47.7 2.4 22 280-303 24-45 (213)
114 PRK11432 fbpC ferric transport 88.0 0.31 6.7E-06 52.9 2.4 21 280-302 30-50 (351)
115 cd03224 ABC_TM1139_LivF_branch 88.0 0.31 6.7E-06 48.2 2.2 22 280-303 24-45 (222)
116 cd02024 NRK1 Nicotinamide ribo 88.0 0.23 5E-06 49.5 1.2 16 287-302 2-17 (187)
117 cd03292 ABC_FtsE_transporter F 87.9 0.33 7.2E-06 47.7 2.3 21 280-302 25-45 (214)
118 TIGR03265 PhnT2 putative 2-ami 87.9 0.32 6.9E-06 52.8 2.3 21 280-302 28-48 (353)
119 PRK10851 sulfate/thiosulfate t 87.9 0.44 9.5E-06 51.7 3.4 21 280-302 26-46 (353)
120 TIGR02012 tigrfam_recA protein 87.9 0.3 6.5E-06 52.7 2.1 21 280-302 53-73 (321)
121 cd01130 VirB11-like_ATPase Typ 87.8 0.23 5E-06 48.5 1.1 37 264-302 6-43 (186)
122 PRK11124 artP arginine transpo 87.8 0.33 7.2E-06 48.9 2.3 22 280-303 26-47 (242)
123 PRK14247 phosphate ABC transpo 87.8 0.34 7.3E-06 49.1 2.3 22 280-303 27-48 (250)
124 TIGR03608 L_ocin_972_ABC putat 87.7 0.34 7.3E-06 47.4 2.2 21 280-302 22-42 (206)
125 PRK09452 potA putrescine/sperm 87.7 0.32 7E-06 53.3 2.3 21 280-302 38-58 (375)
126 PRK09354 recA recombinase A; P 87.7 0.31 6.7E-06 53.2 2.1 21 280-302 58-78 (349)
127 COG0468 RecA RecA/RadA recombi 87.6 0.24 5.1E-06 52.5 1.1 21 280-302 58-78 (279)
128 TIGR01360 aden_kin_iso1 adenyl 87.6 0.3 6.4E-06 46.6 1.7 17 286-302 5-21 (188)
129 TIGR01978 sufC FeS assembly AT 87.6 0.35 7.7E-06 48.5 2.4 21 280-302 24-44 (243)
130 cd03293 ABC_NrtD_SsuB_transpor 87.6 0.34 7.3E-06 48.1 2.1 22 280-303 28-49 (220)
131 cd03268 ABC_BcrA_bacitracin_re 87.6 0.36 7.8E-06 47.4 2.3 21 280-302 24-44 (208)
132 TIGR02236 recomb_radA DNA repa 87.5 0.33 7.2E-06 51.1 2.2 21 280-302 93-113 (310)
133 cd03254 ABCC_Glucan_exporter_l 87.5 0.37 7.9E-06 48.0 2.4 21 280-302 27-47 (229)
134 PRK15079 oligopeptide ABC tran 87.5 0.48 1E-05 50.9 3.4 22 280-303 45-66 (331)
135 TIGR02142 modC_ABC molybdenum 87.5 0.51 1.1E-05 51.0 3.6 21 280-302 21-41 (354)
136 cd02019 NK Nucleoside/nucleoti 87.4 0.3 6.5E-06 40.5 1.4 13 290-302 5-17 (69)
137 cd03219 ABC_Mj1267_LivG_branch 87.4 0.36 7.8E-06 48.3 2.3 22 280-303 24-45 (236)
138 PRK11701 phnK phosphonate C-P 87.4 0.54 1.2E-05 48.0 3.6 22 280-303 30-51 (258)
139 TIGR03410 urea_trans_UrtE urea 87.4 0.38 8.1E-06 48.0 2.4 22 280-303 24-45 (230)
140 cd03247 ABCC_cytochrome_bd The 87.4 0.39 8.4E-06 46.3 2.4 22 280-303 26-47 (178)
141 PRK11650 ugpC glycerol-3-phosp 87.3 0.36 7.8E-06 52.4 2.3 21 280-302 28-48 (356)
142 PLN02165 adenylate isopentenyl 87.3 0.41 8.8E-06 52.0 2.7 30 271-302 32-61 (334)
143 cd03216 ABC_Carb_Monos_I This 87.2 0.39 8.4E-06 45.9 2.3 21 280-302 24-44 (163)
144 cd03259 ABC_Carb_Solutes_like 87.2 0.38 8.3E-06 47.4 2.3 21 280-302 24-44 (213)
145 PRK11629 lolD lipoprotein tran 87.2 0.38 8.1E-06 48.3 2.2 21 280-302 33-53 (233)
146 cd03223 ABCD_peroxisomal_ALDP 87.2 0.4 8.7E-06 46.0 2.3 21 280-302 25-45 (166)
147 cd03266 ABC_NatA_sodium_export 87.1 0.4 8.6E-06 47.4 2.3 22 280-303 29-50 (218)
148 PRK09087 hypothetical protein; 87.1 0.29 6.4E-06 49.8 1.5 20 282-303 44-63 (226)
149 PRK15177 Vi polysaccharide exp 87.1 0.39 8.5E-06 47.9 2.3 21 280-302 11-31 (213)
150 TIGR02211 LolD_lipo_ex lipopro 87.0 0.4 8.7E-06 47.5 2.3 22 280-303 29-50 (221)
151 PRK13539 cytochrome c biogenes 87.0 0.41 8.8E-06 47.3 2.3 21 280-302 26-46 (207)
152 cd03265 ABC_DrrA DrrA is the A 87.0 0.41 8.9E-06 47.5 2.4 22 280-303 24-45 (220)
153 PRK10247 putative ABC transpor 87.0 0.41 8.9E-06 47.9 2.4 21 280-302 31-51 (225)
154 cd03246 ABCC_Protease_Secretio 86.9 0.43 9.3E-06 45.8 2.4 21 280-302 26-46 (173)
155 PRK09361 radB DNA repair and r 86.8 0.39 8.5E-06 47.8 2.2 21 280-302 21-41 (225)
156 cd03230 ABC_DR_subfamily_A Thi 86.8 0.42 9.1E-06 45.9 2.3 21 280-302 24-44 (173)
157 TIGR00554 panK_bact pantothena 86.8 0.38 8.2E-06 51.2 2.1 20 283-302 61-80 (290)
158 cd03245 ABCC_bacteriocin_expor 86.7 0.43 9.4E-06 47.2 2.4 21 280-302 28-48 (220)
159 PF00910 RNA_helicase: RNA hel 86.6 0.33 7.2E-06 43.4 1.4 16 286-303 2-17 (107)
160 KOG0060|consensus 86.6 0.39 8.5E-06 55.4 2.2 21 280-302 459-479 (659)
161 cd03222 ABC_RNaseL_inhibitor T 86.6 0.93 2E-05 44.6 4.6 21 280-302 23-43 (177)
162 cd03250 ABCC_MRP_domain1 Domai 86.6 0.45 9.7E-06 46.7 2.4 22 280-303 29-50 (204)
163 cd03112 CobW_like The function 86.6 0.46 9.9E-06 45.5 2.4 54 285-340 3-61 (158)
164 PRK06217 hypothetical protein; 86.5 0.38 8.2E-06 46.7 1.8 33 285-321 4-37 (183)
165 cd03229 ABC_Class3 This class 86.5 0.46 1E-05 45.8 2.4 21 280-302 24-44 (178)
166 cd03214 ABC_Iron-Siderophores_ 86.4 0.47 1E-05 45.8 2.4 21 280-302 23-43 (180)
167 PRK11248 tauB taurine transpor 86.4 0.46 9.9E-06 48.8 2.4 21 280-302 25-45 (255)
168 TIGR02881 spore_V_K stage V sp 86.3 0.45 9.7E-06 49.0 2.3 18 283-302 43-60 (261)
169 cd03221 ABCF_EF-3 ABCF_EF-3 E 86.3 0.48 1E-05 44.5 2.3 21 280-302 24-44 (144)
170 cd03296 ABC_CysA_sulfate_impor 86.3 0.45 9.9E-06 47.9 2.3 22 280-303 26-47 (239)
171 cd03263 ABC_subfamily_A The AB 86.3 0.47 1E-05 47.0 2.3 22 280-303 26-47 (220)
172 PRK09183 transposase/IS protei 86.3 0.41 8.8E-06 49.7 2.0 22 280-303 100-121 (259)
173 PRK04301 radA DNA repair and r 86.2 0.42 9.2E-06 50.7 2.1 21 280-302 100-120 (317)
174 TIGR03881 KaiC_arch_4 KaiC dom 86.2 0.44 9.5E-06 47.5 2.1 21 280-302 18-38 (229)
175 PF10662 PduV-EutP: Ethanolami 86.2 0.41 9E-06 46.1 1.9 55 284-358 3-57 (143)
176 PRK11247 ssuB aliphatic sulfon 86.2 0.46 1E-05 49.1 2.3 21 280-302 36-56 (257)
177 cd03218 ABC_YhbG The ABC trans 86.2 0.46 1E-05 47.4 2.3 21 280-302 24-44 (232)
178 PRK13540 cytochrome c biogenes 86.2 0.49 1.1E-05 46.5 2.4 21 280-302 25-45 (200)
179 PRK10908 cell division protein 86.1 0.49 1.1E-05 47.1 2.4 21 280-302 26-46 (222)
180 TIGR01188 drrA daunorubicin re 86.1 0.63 1.4E-05 48.9 3.3 21 280-302 17-37 (302)
181 TIGR03877 thermo_KaiC_1 KaiC d 86.1 0.45 9.8E-06 48.3 2.1 21 280-302 19-39 (237)
182 TIGR03005 ectoine_ehuA ectoine 86.0 0.48 1E-05 48.1 2.4 21 280-302 24-44 (252)
183 PRK11144 modC molybdate transp 86.0 0.47 1E-05 51.3 2.4 21 280-302 22-42 (352)
184 PRK14527 adenylate kinase; Pro 85.9 0.49 1.1E-05 46.2 2.2 41 583-623 142-188 (191)
185 cd03301 ABC_MalK_N The N-termi 85.9 0.51 1.1E-05 46.5 2.4 21 280-302 24-44 (213)
186 cd03233 ABC_PDR_domain1 The pl 85.9 0.49 1.1E-05 46.8 2.2 22 280-303 31-52 (202)
187 PRK06620 hypothetical protein; 85.8 0.49 1.1E-05 47.8 2.3 22 280-303 42-63 (214)
188 TIGR00972 3a0107s01c2 phosphat 85.8 0.51 1.1E-05 47.8 2.4 21 280-302 25-45 (247)
189 COG1120 FepC ABC-type cobalami 85.8 0.49 1.1E-05 49.7 2.3 20 280-301 26-45 (258)
190 PRK10584 putative ABC transpor 85.8 0.5 1.1E-05 47.1 2.3 22 280-303 34-55 (228)
191 TIGR00150 HI0065_YjeE ATPase, 85.7 0.53 1.2E-05 44.7 2.3 21 280-302 20-40 (133)
192 TIGR01184 ntrCD nitrate transp 85.7 0.5 1.1E-05 47.6 2.2 21 280-302 9-29 (230)
193 PRK11000 maltose/maltodextrin 85.7 0.49 1.1E-05 51.6 2.3 21 280-302 27-47 (369)
194 PRK14274 phosphate ABC transpo 85.7 0.5 1.1E-05 48.2 2.3 22 280-303 36-57 (259)
195 TIGR02323 CP_lyasePhnK phospho 85.6 0.5 1.1E-05 47.9 2.2 21 280-302 27-47 (253)
196 PRK13538 cytochrome c biogenes 85.6 0.53 1.2E-05 46.3 2.3 21 280-302 25-45 (204)
197 PRK13543 cytochrome c biogenes 85.6 0.53 1.2E-05 46.8 2.3 21 280-302 35-55 (214)
198 cd03248 ABCC_TAP TAP, the Tran 85.6 0.54 1.2E-05 46.8 2.4 21 280-302 38-58 (226)
199 cd03295 ABC_OpuCA_Osmoprotecti 85.6 0.53 1.2E-05 47.5 2.4 21 280-302 25-45 (242)
200 PRK06893 DNA replication initi 85.4 0.41 8.9E-06 48.5 1.5 18 284-303 41-58 (229)
201 PRK14267 phosphate ABC transpo 85.4 0.55 1.2E-05 47.6 2.4 22 280-303 28-49 (253)
202 TIGR03258 PhnT 2-aminoethylpho 85.3 0.53 1.1E-05 51.3 2.4 21 280-302 29-49 (362)
203 PRK13541 cytochrome c biogenes 85.3 0.55 1.2E-05 45.9 2.3 21 280-302 24-44 (195)
204 PF06745 KaiC: KaiC; InterPro 85.3 0.44 9.6E-06 47.5 1.6 42 480-522 117-158 (226)
205 cd03228 ABCC_MRP_Like The MRP 85.2 0.59 1.3E-05 44.8 2.4 21 280-302 26-46 (171)
206 PRK11264 putative amino-acid A 85.2 0.55 1.2E-05 47.5 2.3 21 280-302 27-47 (250)
207 PF13401 AAA_22: AAA domain; P 85.2 0.43 9.3E-06 42.7 1.4 19 282-302 4-22 (131)
208 PRK14261 phosphate ABC transpo 85.2 0.55 1.2E-05 47.7 2.3 22 280-303 30-51 (253)
209 PRK11174 cysteine/glutathione 85.1 0.46 1E-05 54.2 1.9 22 280-303 374-395 (588)
210 cd03215 ABC_Carb_Monos_II This 85.0 0.58 1.3E-05 45.3 2.3 22 280-303 24-45 (182)
211 PRK05439 pantothenate kinase; 85.0 0.58 1.3E-05 50.3 2.5 22 281-302 83-104 (311)
212 PLN03046 D-glycerate 3-kinase; 85.0 0.51 1.1E-05 53.0 2.1 50 252-302 177-230 (460)
213 PRK14273 phosphate ABC transpo 85.0 0.58 1.2E-05 47.6 2.3 21 280-302 31-51 (254)
214 PRK10744 pstB phosphate transp 85.0 0.57 1.2E-05 47.9 2.3 22 280-303 37-58 (260)
215 PRK11022 dppD dipeptide transp 85.0 0.55 1.2E-05 50.3 2.3 21 280-302 31-51 (326)
216 CHL00131 ycf16 sulfate ABC tra 85.0 0.57 1.2E-05 47.4 2.3 22 280-303 31-52 (252)
217 PF07724 AAA_2: AAA domain (Cd 84.9 0.52 1.1E-05 46.1 1.9 17 287-303 6-22 (171)
218 PRK14239 phosphate transporter 84.9 0.58 1.3E-05 47.4 2.3 22 280-303 29-50 (252)
219 cd03271 ABC_UvrA_II The excisi 84.9 0.56 1.2E-05 49.1 2.3 24 277-302 16-39 (261)
220 cd00071 GMPK Guanosine monopho 84.9 0.44 9.5E-06 44.6 1.3 13 290-302 5-17 (137)
221 cd03290 ABCC_SUR1_N The SUR do 84.8 0.61 1.3E-05 46.2 2.4 21 280-302 25-45 (218)
222 PRK14256 phosphate ABC transpo 84.8 0.58 1.3E-05 47.5 2.3 22 280-303 28-49 (252)
223 PLN02318 phosphoribulokinase/u 84.8 0.6 1.3E-05 54.5 2.6 21 283-303 64-84 (656)
224 PRK13648 cbiO cobalt transport 84.8 0.6 1.3E-05 48.1 2.4 22 280-303 33-54 (269)
225 PRK15093 antimicrobial peptide 84.8 0.58 1.2E-05 50.1 2.3 22 280-303 31-52 (330)
226 PRK14737 gmk guanylate kinase; 84.7 0.58 1.3E-05 46.2 2.2 19 282-302 4-22 (186)
227 PRK14241 phosphate transporter 84.7 0.59 1.3E-05 47.7 2.2 22 280-303 28-49 (258)
228 PRK13649 cbiO cobalt transport 84.6 0.6 1.3E-05 48.3 2.3 21 280-302 31-51 (280)
229 PTZ00035 Rad51 protein; Provis 84.6 0.55 1.2E-05 50.8 2.1 21 280-302 116-136 (337)
230 PRK13638 cbiO cobalt transport 84.6 0.61 1.3E-05 48.1 2.3 21 280-302 25-45 (271)
231 PRK10751 molybdopterin-guanine 84.6 0.55 1.2E-05 46.4 1.9 18 285-302 7-24 (173)
232 cd03251 ABCC_MsbA MsbA is an e 84.5 0.64 1.4E-05 46.4 2.4 21 280-302 26-46 (234)
233 PRK09473 oppD oligopeptide tra 84.5 0.58 1.2E-05 50.2 2.2 22 280-303 40-61 (330)
234 PLN02796 D-glycerate 3-kinase 84.5 0.63 1.4E-05 50.8 2.4 19 284-302 100-118 (347)
235 cd03234 ABCG_White The White s 84.5 0.59 1.3E-05 46.7 2.1 22 280-303 31-52 (226)
236 cd03237 ABC_RNaseL_inhibitor_d 84.5 0.64 1.4E-05 47.7 2.4 22 280-303 23-44 (246)
237 PRK14242 phosphate transporter 84.4 0.62 1.3E-05 47.3 2.3 22 280-303 30-51 (253)
238 TIGR02324 CP_lyasePhnL phospho 84.4 0.65 1.4E-05 46.1 2.4 22 280-303 32-53 (224)
239 cd02021 GntK Gluconate kinase 84.4 0.52 1.1E-05 43.7 1.6 14 290-303 5-18 (150)
240 PLN03187 meiotic recombination 84.4 0.56 1.2E-05 51.1 2.0 21 280-302 124-144 (344)
241 PRK14259 phosphate ABC transpo 84.4 0.63 1.4E-05 48.1 2.3 22 280-303 37-58 (269)
242 cd03369 ABCC_NFT1 Domain 2 of 84.4 0.66 1.4E-05 45.6 2.4 22 280-303 32-53 (207)
243 TIGR01189 ccmA heme ABC export 84.4 0.65 1.4E-05 45.4 2.3 21 280-302 24-44 (198)
244 PRK14240 phosphate transporter 84.4 0.64 1.4E-05 47.0 2.3 22 280-303 27-48 (250)
245 PRK09493 glnQ glutamine ABC tr 84.4 0.65 1.4E-05 46.7 2.3 22 280-303 25-46 (240)
246 cd03249 ABC_MTABC3_MDL1_MDL2 M 84.4 0.62 1.4E-05 46.7 2.2 22 280-303 27-48 (238)
247 PRK11831 putative ABC transpor 84.3 0.65 1.4E-05 47.9 2.3 22 280-303 31-52 (269)
248 cd00464 SK Shikimate kinase (S 84.2 0.5 1.1E-05 43.5 1.4 17 285-303 2-18 (154)
249 PRK14244 phosphate ABC transpo 84.1 0.66 1.4E-05 47.1 2.3 22 280-303 29-50 (251)
250 PRK10418 nikD nickel transport 84.1 0.66 1.4E-05 47.3 2.3 22 280-303 27-48 (254)
251 PRK10771 thiQ thiamine transpo 84.0 0.68 1.5E-05 46.4 2.3 21 280-302 23-43 (232)
252 PRK15112 antimicrobial peptide 84.0 0.66 1.4E-05 47.8 2.3 21 280-302 37-57 (267)
253 PRK14262 phosphate ABC transpo 84.0 0.68 1.5E-05 46.9 2.3 22 280-303 27-48 (250)
254 cd03283 ABC_MutS-like MutS-lik 84.0 0.68 1.5E-05 46.1 2.3 20 281-302 24-43 (199)
255 PRK13645 cbiO cobalt transport 84.0 0.65 1.4E-05 48.4 2.2 22 280-303 35-56 (289)
256 TIGR02655 circ_KaiC circadian 84.0 0.61 1.3E-05 52.6 2.1 21 280-302 19-39 (484)
257 PRK13632 cbiO cobalt transport 83.9 0.68 1.5E-05 47.8 2.4 21 280-302 33-53 (271)
258 PF13191 AAA_16: AAA ATPase do 83.9 0.55 1.2E-05 44.2 1.5 20 281-302 23-42 (185)
259 cd02020 CMPK Cytidine monophos 83.8 0.52 1.1E-05 42.9 1.3 15 288-302 3-17 (147)
260 cd03264 ABC_drug_resistance_li 83.8 0.64 1.4E-05 45.8 2.0 19 281-302 25-43 (211)
261 PRK13548 hmuV hemin importer A 83.8 0.69 1.5E-05 47.4 2.3 21 280-302 26-46 (258)
262 cd03232 ABC_PDR_domain2 The pl 83.8 0.68 1.5E-05 45.3 2.1 22 280-303 31-52 (192)
263 PRK09984 phosphonate/organopho 83.7 0.7 1.5E-05 47.3 2.3 22 280-303 28-49 (262)
264 cd03294 ABC_Pro_Gly_Bertaine T 83.7 0.71 1.5E-05 47.7 2.4 21 280-302 48-68 (269)
265 cd03244 ABCC_MRP_domain2 Domai 83.7 0.73 1.6E-05 45.6 2.4 21 280-302 28-48 (221)
266 PRK13547 hmuV hemin importer A 83.6 0.71 1.5E-05 48.1 2.3 22 280-303 25-46 (272)
267 PRK14237 phosphate transporter 83.6 0.72 1.6E-05 47.5 2.4 21 280-302 44-64 (267)
268 PRK11300 livG leucine/isoleuci 83.6 0.69 1.5E-05 46.9 2.2 22 280-303 29-50 (255)
269 TIGR03771 anch_rpt_ABC anchore 83.6 0.73 1.6E-05 46.2 2.3 22 280-303 4-25 (223)
270 PRK11176 lipid transporter ATP 83.6 0.67 1.5E-05 52.7 2.3 22 280-303 367-388 (582)
271 PRK10619 histidine/lysine/argi 83.5 0.71 1.5E-05 47.1 2.3 21 280-302 29-49 (257)
272 cd01128 rho_factor Transcripti 83.5 0.69 1.5E-05 48.1 2.2 20 281-302 15-34 (249)
273 PRK09580 sufC cysteine desulfu 83.5 0.73 1.6E-05 46.4 2.3 22 280-303 25-46 (248)
274 cd01120 RecA-like_NTPases RecA 83.5 0.55 1.2E-05 42.6 1.3 15 286-302 3-17 (165)
275 TIGR02238 recomb_DMC1 meiotic 83.5 0.63 1.4E-05 49.9 1.9 21 280-302 94-114 (313)
276 PRK10253 iron-enterobactin tra 83.5 0.74 1.6E-05 47.3 2.4 22 280-303 31-52 (265)
277 TIGR02769 nickel_nikE nickel i 83.5 0.73 1.6E-05 47.4 2.3 21 280-302 35-55 (265)
278 PRK10419 nikE nickel transport 83.5 0.72 1.6E-05 47.6 2.3 22 280-303 36-57 (268)
279 TIGR03411 urea_trans_UrtD urea 83.4 0.74 1.6E-05 46.3 2.3 21 280-302 26-46 (242)
280 TIGR00455 apsK adenylylsulfate 83.4 0.74 1.6E-05 44.5 2.2 22 280-303 16-37 (184)
281 TIGR02770 nickel_nikD nickel i 83.4 0.76 1.6E-05 46.1 2.3 22 280-303 10-31 (230)
282 PRK06067 flagellar accessory p 83.3 0.74 1.6E-05 46.3 2.3 21 280-302 23-43 (234)
283 PRK04328 hypothetical protein; 83.3 0.72 1.6E-05 47.4 2.2 21 280-302 21-41 (249)
284 PRK14249 phosphate ABC transpo 83.3 0.76 1.7E-05 46.6 2.4 21 280-302 28-48 (251)
285 cd00267 ABC_ATPase ABC (ATP-bi 83.3 0.79 1.7E-05 43.1 2.3 21 280-302 23-43 (157)
286 PRK15453 phosphoribulokinase; 83.3 0.63 1.4E-05 49.7 1.8 18 285-302 6-23 (290)
287 PRK11614 livF leucine/isoleuci 83.2 0.74 1.6E-05 46.2 2.2 21 280-302 29-49 (237)
288 PRK05973 replicative DNA helic 83.2 0.69 1.5E-05 47.9 2.0 21 280-302 62-82 (237)
289 PLN02772 guanylate kinase 83.2 1.8 3.9E-05 48.1 5.4 76 218-302 75-153 (398)
290 PRK10070 glycine betaine trans 83.2 0.71 1.5E-05 51.1 2.2 21 280-302 52-72 (400)
291 cd03231 ABC_CcmA_heme_exporter 83.2 0.78 1.7E-05 45.1 2.3 21 280-302 24-44 (201)
292 PRK15056 manganese/iron transp 83.2 0.77 1.7E-05 47.5 2.3 21 280-302 31-51 (272)
293 COG2884 FtsE Predicted ATPase 83.1 0.74 1.6E-05 46.9 2.1 21 280-302 26-46 (223)
294 TIGR03420 DnaA_homol_Hda DnaA 83.1 0.79 1.7E-05 45.2 2.3 20 282-303 38-57 (226)
295 TIGR03740 galliderm_ABC gallid 83.0 0.8 1.7E-05 45.6 2.3 21 280-302 24-44 (223)
296 cd03272 ABC_SMC3_euk Eukaryoti 83.0 0.79 1.7E-05 46.0 2.3 20 281-302 22-41 (243)
297 KOG1970|consensus 83.0 0.65 1.4E-05 53.4 1.9 38 262-303 92-129 (634)
298 cd02027 APSK Adenosine 5'-phos 82.9 0.61 1.3E-05 44.1 1.4 30 285-316 2-34 (149)
299 TIGR03797 NHPM_micro_ABC2 NHPM 82.9 0.73 1.6E-05 53.7 2.3 22 280-303 477-498 (686)
300 PF13481 AAA_25: AAA domain; P 82.9 0.72 1.6E-05 44.3 1.9 21 280-302 30-50 (193)
301 COG1118 CysA ABC-type sulfate/ 82.9 0.77 1.7E-05 49.6 2.3 21 280-302 26-46 (345)
302 PRK07429 phosphoribulokinase; 82.9 0.82 1.8E-05 49.4 2.5 21 282-302 6-26 (327)
303 TIGR03499 FlhF flagellar biosy 82.8 0.72 1.6E-05 48.4 2.0 36 281-318 193-233 (282)
304 PRK14255 phosphate ABC transpo 82.8 0.82 1.8E-05 46.3 2.4 22 280-303 29-50 (252)
305 PRK14265 phosphate ABC transpo 82.7 0.8 1.7E-05 47.5 2.3 22 280-303 44-65 (274)
306 PRK13640 cbiO cobalt transport 82.7 0.81 1.7E-05 47.7 2.3 22 280-303 31-52 (282)
307 PRK14248 phosphate ABC transpo 82.7 0.82 1.8E-05 47.0 2.3 21 280-302 45-65 (268)
308 cd03267 ABC_NatA_like Similar 82.6 0.82 1.8E-05 46.2 2.3 21 280-302 45-65 (236)
309 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 82.6 0.84 1.8E-05 45.8 2.4 22 280-303 46-67 (224)
310 PRK14236 phosphate transporter 82.6 0.81 1.7E-05 47.3 2.3 22 280-303 49-70 (272)
311 PRK14530 adenylate kinase; Pro 82.6 0.76 1.7E-05 45.8 2.0 45 581-625 161-211 (215)
312 COG1102 Cmk Cytidylate kinase 82.6 0.65 1.4E-05 46.1 1.5 17 287-303 3-19 (179)
313 TIGR00968 3a0106s01 sulfate AB 82.6 0.84 1.8E-05 46.1 2.3 21 280-302 24-44 (237)
314 PRK14253 phosphate ABC transpo 82.6 0.83 1.8E-05 46.2 2.3 22 280-303 27-48 (249)
315 TIGR01277 thiQ thiamine ABC tr 82.6 0.81 1.8E-05 45.3 2.2 22 280-303 22-43 (213)
316 PF00308 Bac_DnaA: Bacterial d 82.6 0.52 1.1E-05 47.7 0.8 46 255-302 5-52 (219)
317 cd03253 ABCC_ATM1_transporter 82.6 0.85 1.8E-05 45.6 2.3 21 280-302 25-45 (236)
318 PRK09544 znuC high-affinity zi 82.6 0.84 1.8E-05 46.9 2.3 22 280-303 28-49 (251)
319 cd03213 ABCG_EPDR ABCG transpo 82.5 0.86 1.9E-05 44.7 2.3 21 280-302 33-53 (194)
320 cd03300 ABC_PotA_N PotA is an 82.5 0.87 1.9E-05 45.7 2.4 21 280-302 24-44 (232)
321 PRK11153 metN DL-methionine tr 82.4 0.8 1.7E-05 49.3 2.3 21 280-302 29-49 (343)
322 TIGR00635 ruvB Holliday juncti 82.4 0.72 1.6E-05 47.9 1.8 17 284-302 32-48 (305)
323 PRK14238 phosphate transporter 82.4 0.84 1.8E-05 47.2 2.3 22 280-303 48-69 (271)
324 cd03288 ABCC_SUR2 The SUR doma 82.4 1.2 2.6E-05 45.6 3.4 21 280-302 45-65 (257)
325 cd03236 ABC_RNaseL_inhibitor_d 82.4 0.87 1.9E-05 47.1 2.4 21 280-302 24-44 (255)
326 TIGR01192 chvA glucan exporter 82.3 0.9 1.9E-05 52.2 2.7 22 280-303 359-380 (585)
327 TIGR02857 CydD thiol reductant 82.3 0.81 1.8E-05 51.5 2.3 22 280-303 346-367 (529)
328 cd00984 DnaB_C DnaB helicase C 82.3 0.81 1.8E-05 45.8 2.1 21 280-302 11-31 (242)
329 PF03193 DUF258: Protein of un 82.2 0.92 2E-05 44.5 2.4 19 282-302 35-53 (161)
330 PRK03695 vitamin B12-transport 82.2 0.89 1.9E-05 46.3 2.4 22 280-303 20-41 (248)
331 PRK11231 fecE iron-dicitrate t 82.2 0.88 1.9E-05 46.4 2.3 22 280-303 26-47 (255)
332 PRK13647 cbiO cobalt transport 82.1 0.89 1.9E-05 47.2 2.3 21 280-302 29-49 (274)
333 TIGR01242 26Sp45 26S proteasom 82.1 0.8 1.7E-05 49.4 2.1 25 275-303 151-175 (364)
334 PRK03992 proteasome-activating 82.0 0.83 1.8E-05 50.1 2.2 26 274-303 159-184 (389)
335 PRK14243 phosphate transporter 82.0 0.91 2E-05 46.7 2.4 22 280-303 34-55 (264)
336 PRK13657 cyclic beta-1,2-gluca 82.0 0.84 1.8E-05 52.2 2.3 22 280-303 359-380 (588)
337 cd02026 PRK Phosphoribulokinas 81.9 0.65 1.4E-05 48.7 1.3 15 288-302 3-17 (273)
338 PRK15134 microcin C ABC transp 81.9 1.2 2.6E-05 50.4 3.5 19 280-300 33-51 (529)
339 cd01131 PilT Pilus retraction 81.8 0.79 1.7E-05 45.4 1.8 16 285-302 4-19 (198)
340 PRK10522 multidrug transporter 81.7 0.86 1.9E-05 51.8 2.3 22 280-303 347-368 (547)
341 TIGR01193 bacteriocin_ABC ABC- 81.7 0.77 1.7E-05 53.8 1.9 22 280-303 498-519 (708)
342 TIGR02314 ABC_MetN D-methionin 81.7 0.9 1.9E-05 49.3 2.3 21 280-302 29-49 (343)
343 PRK10261 glutathione transport 81.6 1.2 2.6E-05 51.7 3.4 21 280-302 348-368 (623)
344 PRK14251 phosphate ABC transpo 81.6 0.94 2E-05 45.9 2.3 21 280-302 28-48 (251)
345 PRK14271 phosphate ABC transpo 81.6 0.93 2E-05 47.2 2.3 22 280-303 45-66 (276)
346 COG0563 Adk Adenylate kinase a 81.5 0.86 1.9E-05 45.0 1.9 17 284-302 2-18 (178)
347 cd03299 ABC_ModC_like Archeal 81.5 0.97 2.1E-05 45.6 2.3 22 280-303 23-44 (235)
348 TIGR03873 F420-0_ABC_ATP propo 81.5 0.94 2E-05 46.2 2.3 22 280-303 25-46 (256)
349 PRK03839 putative kinase; Prov 81.5 0.84 1.8E-05 43.9 1.8 17 285-303 3-19 (180)
350 PRK14270 phosphate ABC transpo 81.5 0.96 2.1E-05 45.9 2.3 21 280-302 28-48 (251)
351 PRK08903 DnaA regulatory inact 81.5 0.99 2.1E-05 45.0 2.3 20 282-303 42-61 (227)
352 PRK14275 phosphate ABC transpo 81.4 0.96 2.1E-05 47.3 2.3 21 280-302 63-83 (286)
353 TIGR01288 nodI ATP-binding ABC 81.3 0.97 2.1E-05 47.6 2.3 21 280-302 28-48 (303)
354 TIGR02982 heterocyst_DevA ABC 81.3 1 2.2E-05 44.8 2.4 21 280-302 29-49 (220)
355 smart00072 GuKc Guanylate kina 81.3 0.96 2.1E-05 44.0 2.1 19 282-302 2-20 (184)
356 PRK13650 cbiO cobalt transport 81.2 0.97 2.1E-05 47.0 2.3 21 280-302 31-51 (279)
357 KOG0635|consensus 81.2 0.94 2E-05 44.7 2.0 23 279-303 28-50 (207)
358 PRK14266 phosphate ABC transpo 81.2 1 2.2E-05 45.6 2.4 22 280-303 27-48 (250)
359 PRK14268 phosphate ABC transpo 81.2 1 2.2E-05 46.1 2.4 22 280-303 36-57 (258)
360 PRK14252 phosphate ABC transpo 81.1 1 2.2E-05 46.3 2.3 21 280-302 40-60 (265)
361 PRK13537 nodulation ABC transp 81.1 1.3 2.8E-05 46.9 3.2 21 280-302 31-51 (306)
362 PRK14235 phosphate transporter 81.1 1 2.2E-05 46.4 2.4 22 280-303 43-64 (267)
363 PRK14260 phosphate ABC transpo 81.1 1 2.2E-05 46.1 2.3 22 280-303 31-52 (259)
364 PF07728 AAA_5: AAA domain (dy 81.1 0.8 1.7E-05 41.9 1.4 13 290-302 5-17 (139)
365 PRK14272 phosphate ABC transpo 81.0 1 2.3E-05 45.5 2.4 22 280-303 28-49 (252)
366 COG2274 SunT ABC-type bacterio 81.0 0.94 2E-05 53.8 2.3 22 280-303 497-518 (709)
367 PRK13646 cbiO cobalt transport 81.0 1 2.2E-05 47.1 2.3 21 280-302 31-51 (286)
368 PRK14269 phosphate ABC transpo 80.9 1 2.3E-05 45.6 2.3 21 280-302 26-46 (246)
369 PRK14254 phosphate ABC transpo 80.9 1 2.3E-05 47.1 2.4 21 280-302 63-83 (285)
370 TIGR01842 type_I_sec_PrtD type 80.8 0.98 2.1E-05 51.3 2.3 22 280-303 342-363 (544)
371 PRK13635 cbiO cobalt transport 80.7 1.1 2.3E-05 46.8 2.3 21 280-302 31-51 (279)
372 cd03217 ABC_FeS_Assembly ABC-t 80.7 1.1 2.4E-05 44.1 2.4 21 280-302 24-44 (200)
373 PRK14531 adenylate kinase; Pro 80.6 0.96 2.1E-05 44.0 1.9 17 284-302 4-20 (183)
374 PRK10790 putative multidrug tr 80.6 1 2.2E-05 51.6 2.3 22 280-303 365-386 (592)
375 PRK02496 adk adenylate kinase; 80.6 0.95 2.1E-05 43.7 1.8 17 285-303 4-20 (184)
376 PRK13636 cbiO cobalt transport 80.5 1.5 3.2E-05 45.8 3.4 22 280-303 30-51 (283)
377 PRK13631 cbiO cobalt transport 80.5 1.1 2.3E-05 48.0 2.3 22 280-303 50-71 (320)
378 PRK13637 cbiO cobalt transport 80.5 1.1 2.3E-05 47.0 2.3 21 280-302 31-51 (287)
379 TIGR00630 uvra excinuclease AB 80.5 0.99 2.1E-05 55.1 2.3 31 270-302 9-40 (924)
380 PF00625 Guanylate_kin: Guanyl 80.4 1.1 2.4E-05 43.4 2.2 19 282-302 2-20 (183)
381 PTZ00454 26S protease regulato 80.4 1 2.2E-05 49.9 2.1 24 276-303 175-198 (398)
382 COG4178 ABC-type uncharacteriz 80.4 1 2.3E-05 52.4 2.3 21 280-302 417-437 (604)
383 PRK14722 flhF flagellar biosyn 80.4 0.99 2.2E-05 49.7 2.1 21 280-302 135-155 (374)
384 PRK05416 glmZ(sRNA)-inactivati 80.3 1.1 2.3E-05 47.7 2.2 20 282-303 6-25 (288)
385 TIGR03375 type_I_sec_LssB type 80.2 1 2.3E-05 52.6 2.3 22 280-303 489-510 (694)
386 TIGR03796 NHPM_micro_ABC1 NHPM 80.1 1 2.3E-05 52.7 2.3 22 280-303 503-524 (710)
387 PRK13643 cbiO cobalt transport 80.1 1.1 2.4E-05 46.9 2.2 22 280-303 30-51 (288)
388 PRK10789 putative multidrug tr 80.1 1.1 2.3E-05 51.4 2.3 22 280-303 339-360 (569)
389 PRK14245 phosphate ABC transpo 80.0 1.1 2.5E-05 45.3 2.3 22 280-303 27-48 (250)
390 PF00448 SRP54: SRP54-type pro 80.0 0.99 2.1E-05 45.1 1.8 32 287-318 4-38 (196)
391 PRK13651 cobalt transporter AT 80.0 1.1 2.4E-05 47.5 2.2 21 280-302 31-51 (305)
392 COG0467 RAD55 RecA-superfamily 79.9 1.1 2.3E-05 46.0 2.0 21 280-302 21-41 (260)
393 PRK00698 tmk thymidylate kinas 79.9 1.1 2.3E-05 43.5 2.0 17 286-302 5-21 (205)
394 cd02029 PRK_like Phosphoribulo 79.9 0.91 2E-05 48.2 1.5 15 288-302 3-17 (277)
395 TIGR03269 met_CoM_red_A2 methy 79.9 1.1 2.4E-05 50.5 2.3 21 280-302 24-44 (520)
396 PF08423 Rad51: Rad51; InterP 79.9 0.95 2E-05 47.0 1.6 21 280-302 36-56 (256)
397 PRK14258 phosphate ABC transpo 79.8 1.2 2.6E-05 45.7 2.3 22 280-303 31-52 (261)
398 TIGR02204 MsbA_rel ABC transpo 79.8 1.1 2.4E-05 50.9 2.3 22 280-303 364-385 (576)
399 cd01124 KaiC KaiC is a circadi 79.7 0.92 2E-05 43.2 1.4 13 290-302 5-17 (187)
400 PRK10416 signal recognition pa 79.7 1.4 3E-05 47.4 2.9 37 281-319 113-152 (318)
401 PRK13634 cbiO cobalt transport 79.6 1.2 2.6E-05 46.7 2.3 21 280-302 31-51 (290)
402 COG4148 ModC ABC-type molybdat 79.6 1.5 3.3E-05 47.0 3.1 34 268-303 10-43 (352)
403 PF08477 Miro: Miro-like prote 79.5 1.2 2.6E-05 39.1 2.0 16 285-302 2-17 (119)
404 TIGR00958 3a01208 Conjugate Tr 79.4 1.1 2.4E-05 52.7 2.3 22 280-303 505-526 (711)
405 PRK11160 cysteine/glutathione 79.4 1.2 2.5E-05 51.2 2.3 22 280-303 364-385 (574)
406 PRK13639 cbiO cobalt transport 79.3 1.2 2.7E-05 46.1 2.3 22 280-303 26-47 (275)
407 PF06414 Zeta_toxin: Zeta toxi 79.3 1.2 2.7E-05 43.8 2.2 23 280-302 11-33 (199)
408 PRK06526 transposase; Provisio 79.3 1 2.3E-05 46.8 1.8 19 282-302 98-116 (254)
409 PRK00349 uvrA excinuclease ABC 79.3 1.1 2.5E-05 54.7 2.3 27 274-302 18-44 (943)
410 CHL00181 cbbX CbbX; Provisiona 79.2 1.3 2.9E-05 46.7 2.6 20 282-303 59-78 (287)
411 PRK09700 D-allose transporter 79.1 1.2 2.6E-05 50.2 2.2 21 280-302 287-307 (510)
412 COG4598 HisP ABC-type histidin 79.1 3.9 8.4E-05 41.7 5.5 51 280-334 30-84 (256)
413 PRK13633 cobalt transporter AT 79.1 1.3 2.8E-05 46.1 2.3 21 280-302 34-54 (280)
414 PRK05057 aroK shikimate kinase 79.0 1.3 2.8E-05 43.0 2.1 18 284-303 6-23 (172)
415 cd03278 ABC_SMC_barmotin Barmo 78.9 1.2 2.7E-05 44.1 2.0 19 281-302 22-40 (197)
416 PRK08727 hypothetical protein; 78.9 1.3 2.8E-05 45.0 2.3 18 283-302 42-59 (233)
417 PRK00080 ruvB Holliday junctio 78.8 1.2 2.7E-05 47.3 2.1 19 283-303 52-70 (328)
418 PRK13546 teichoic acids export 78.8 1.3 2.9E-05 45.9 2.4 22 280-303 48-69 (264)
419 PRK09700 D-allose transporter 78.7 1.3 2.7E-05 50.0 2.3 21 280-302 29-49 (510)
420 COG1122 CbiO ABC-type cobalt t 78.7 1.3 2.9E-05 45.6 2.3 22 280-303 28-49 (235)
421 COG1132 MdlB ABC-type multidru 78.7 1.1 2.4E-05 51.0 1.9 23 280-304 353-375 (567)
422 TIGR01359 UMP_CMP_kin_fam UMP- 78.7 1 2.2E-05 43.0 1.4 16 285-302 2-17 (183)
423 COG4988 CydD ABC-type transpor 78.7 1.3 2.7E-05 51.2 2.3 22 280-303 345-366 (559)
424 PF13173 AAA_14: AAA domain 78.6 1.4 3E-05 40.3 2.1 19 282-302 2-20 (128)
425 PHA00729 NTP-binding motif con 78.6 1.4 3E-05 45.5 2.4 18 284-303 19-36 (226)
426 PRK10938 putative molybdenum t 78.5 1.3 2.8E-05 49.6 2.3 21 280-302 27-47 (490)
427 PF01695 IstB_IS21: IstB-like 78.5 1.2 2.6E-05 43.8 1.8 20 282-303 47-66 (178)
428 PRK03731 aroL shikimate kinase 78.5 1.2 2.7E-05 42.2 1.8 18 284-303 4-21 (171)
429 TIGR02203 MsbA_lipidA lipid A 78.4 1.3 2.9E-05 50.1 2.4 22 280-303 356-377 (571)
430 PF06068 TIP49: TIP49 C-termin 78.3 1.1 2.4E-05 49.5 1.7 60 566-626 321-381 (398)
431 PTZ00361 26 proteosome regulat 78.3 1.2 2.7E-05 49.9 2.1 25 275-303 212-236 (438)
432 PF03215 Rad17: Rad17 cell cyc 78.3 1.2 2.6E-05 51.1 1.9 33 264-302 31-63 (519)
433 TIGR01194 cyc_pep_trnsptr cycl 78.2 1.3 2.8E-05 50.5 2.3 22 280-303 366-387 (555)
434 COG0542 clpA ATP-binding subun 78.2 0.89 1.9E-05 54.3 0.9 44 276-325 513-556 (786)
435 PRK13652 cbiO cobalt transport 78.1 1.4 3.1E-05 45.7 2.3 21 280-302 28-48 (277)
436 PRK10938 putative molybdenum t 78.1 1.4 2.9E-05 49.4 2.3 21 280-302 284-304 (490)
437 PRK14263 phosphate ABC transpo 78.1 1.4 3.1E-05 45.3 2.3 21 280-302 32-52 (261)
438 cd03279 ABC_sbcCD SbcCD and ot 78.1 1.4 3E-05 43.9 2.2 19 282-302 28-46 (213)
439 cd03297 ABC_ModC_molybdenum_tr 78.1 1.3 2.9E-05 43.7 2.0 19 283-303 24-42 (214)
440 COG0178 UvrA Excinuclease ATPa 78.0 1.4 3E-05 52.9 2.4 32 269-302 12-44 (935)
441 PRK13642 cbiO cobalt transport 78.0 1.4 3.1E-05 45.6 2.3 21 280-302 31-51 (277)
442 PRK13644 cbiO cobalt transport 77.8 1.4 3.1E-05 45.6 2.3 21 280-302 26-46 (274)
443 PRK04040 adenylate kinase; Pro 77.8 1.3 2.9E-05 43.8 1.9 16 285-302 5-20 (188)
444 PHA02530 pseT polynucleotide k 77.8 1.3 2.9E-05 45.9 2.0 13 290-302 8-20 (300)
445 TIGR02880 cbbX_cfxQ probable R 77.8 1.3 2.8E-05 46.6 1.9 18 282-301 58-75 (284)
446 TIGR03522 GldA_ABC_ATP gliding 77.7 1.4 3E-05 46.5 2.1 21 280-302 26-46 (301)
447 PRK13947 shikimate kinase; Pro 77.7 1.3 2.9E-05 41.8 1.8 17 285-303 4-20 (171)
448 PRK13641 cbiO cobalt transport 77.7 1.4 3.1E-05 45.9 2.2 21 280-302 31-51 (287)
449 PF13521 AAA_28: AAA domain; P 77.6 1.1 2.4E-05 42.3 1.3 16 285-302 2-17 (163)
450 TIGR00017 cmk cytidylate kinas 77.5 1.3 2.9E-05 44.8 1.9 18 286-303 4-21 (217)
451 PRK11819 putative ABC transpor 77.4 1.5 3.2E-05 50.2 2.4 21 280-302 31-51 (556)
452 PRK10762 D-ribose transporter 77.4 1.4 3E-05 49.5 2.2 21 280-302 28-48 (501)
453 PF13086 AAA_11: AAA domain; P 77.4 1.2 2.5E-05 43.1 1.4 17 284-302 19-35 (236)
454 TIGR03415 ABC_choXWV_ATP choli 77.3 1.5 3.2E-05 48.4 2.3 21 280-302 48-68 (382)
455 cd03291 ABCC_CFTR1 The CFTR su 77.1 1.6 3.4E-05 46.0 2.3 21 280-302 61-81 (282)
456 PRK14264 phosphate ABC transpo 77.1 1.6 3.4E-05 46.1 2.4 21 280-302 69-89 (305)
457 TIGR03269 met_CoM_red_A2 methy 77.1 1.5 3.3E-05 49.4 2.3 21 280-302 308-328 (520)
458 PRK12339 2-phosphoglycerate ki 77.1 1.1 2.4E-05 44.9 1.1 17 284-302 5-21 (197)
459 COG2255 RuvB Holliday junction 77.0 1.2 2.6E-05 47.9 1.4 19 283-303 53-71 (332)
460 PRK15064 ABC transporter ATP-b 77.0 1.5 3.4E-05 49.6 2.4 21 280-302 25-45 (530)
461 PRK15134 microcin C ABC transp 76.9 1.5 3.3E-05 49.6 2.3 21 280-302 310-330 (529)
462 TIGR02633 xylG D-xylose ABC tr 76.7 1.5 3.3E-05 49.1 2.2 21 280-302 25-45 (500)
463 PRK10261 glutathione transport 76.5 1.5 3.4E-05 50.9 2.3 22 280-303 40-61 (623)
464 PRK15439 autoinducer 2 ABC tra 76.5 1.6 3.4E-05 49.3 2.3 21 280-302 35-55 (510)
465 PRK08356 hypothetical protein; 76.4 1.6 3.5E-05 42.9 2.0 18 286-303 7-24 (195)
466 PRK13549 xylose transporter AT 76.4 1.5 3.2E-05 49.4 2.0 21 280-302 29-49 (506)
467 TIGR03015 pepcterm_ATPase puta 76.3 1.7 3.6E-05 44.0 2.2 17 284-302 45-61 (269)
468 PRK10982 galactose/methyl gala 76.3 1.6 3.5E-05 48.9 2.3 21 280-302 22-42 (491)
469 TIGR03880 KaiC_arch_3 KaiC dom 76.3 1.7 3.7E-05 43.4 2.2 21 280-302 14-34 (224)
470 PRK14532 adenylate kinase; Pro 76.2 1.5 3.3E-05 42.3 1.8 17 285-303 3-19 (188)
471 cd03273 ABC_SMC2_euk Eukaryoti 76.2 1.7 3.7E-05 44.3 2.2 17 284-302 27-43 (251)
472 cd04155 Arl3 Arl3 subfamily. 76.1 1.5 3.2E-05 41.0 1.6 16 287-302 17-32 (173)
473 PRK14257 phosphate ABC transpo 76.1 1.8 3.8E-05 46.6 2.4 21 280-302 106-126 (329)
474 PF04665 Pox_A32: Poxvirus A32 76.0 1.4 3.1E-05 45.9 1.6 19 437-455 130-148 (241)
475 PRK13975 thymidylate kinase; P 76.0 1.6 3.5E-05 42.2 1.9 17 287-303 5-21 (196)
476 PRK01184 hypothetical protein; 76.0 1.6 3.4E-05 42.1 1.8 14 290-303 7-20 (184)
477 PRK06921 hypothetical protein; 75.9 1.7 3.6E-05 45.5 2.1 21 281-303 116-136 (266)
478 PRK06761 hypothetical protein; 75.7 1.6 3.5E-05 46.3 2.0 31 492-522 159-189 (282)
479 TIGR01241 FtsH_fam ATP-depende 75.7 1.7 3.7E-05 49.1 2.3 24 276-303 84-107 (495)
480 PRK09536 btuD corrinoid ABC tr 75.6 2.4 5.3E-05 47.0 3.4 36 280-318 27-66 (402)
481 PRK05703 flhF flagellar biosyn 75.5 1.7 3.6E-05 48.6 2.1 35 282-318 221-260 (424)
482 PRK15064 ABC transporter ATP-b 75.5 1.8 3.9E-05 49.0 2.4 21 280-302 343-363 (530)
483 PRK04182 cytidylate kinase; Pr 75.5 1.6 3.6E-05 41.1 1.8 17 287-303 3-19 (180)
484 cd01428 ADK Adenylate kinase ( 75.4 1.4 3.1E-05 42.2 1.4 26 582-607 153-178 (194)
485 TIGR02640 gas_vesic_GvpN gas v 75.3 1.6 3.5E-05 45.2 1.8 20 282-303 21-40 (262)
486 PRK08181 transposase; Validate 75.2 1.6 3.5E-05 45.9 1.8 20 282-303 106-125 (269)
487 COG3840 ThiQ ABC-type thiamine 75.2 1.9 4.2E-05 43.9 2.2 22 280-303 23-44 (231)
488 PRK13342 recombination factor 75.1 1.7 3.7E-05 47.9 2.0 18 284-303 38-55 (413)
489 PRK11147 ABC transporter ATPas 75.1 1.8 4E-05 50.3 2.4 21 280-302 27-47 (635)
490 PRK00091 miaA tRNA delta(2)-is 75.0 1.7 3.7E-05 46.6 1.9 17 286-302 6-22 (307)
491 PRK11288 araG L-arabinose tran 75.0 1.8 3.8E-05 48.8 2.1 21 280-302 277-297 (501)
492 cd01125 repA Hexameric Replica 74.8 1.6 3.6E-05 44.1 1.7 19 282-302 1-19 (239)
493 PRK13477 bifunctional pantoate 74.6 1.6 3.6E-05 49.9 1.8 18 286-303 286-303 (512)
494 TIGR03719 ABC_ABC_ChvD ATP-bin 74.6 1.9 4.2E-05 49.1 2.4 21 280-302 29-49 (552)
495 PRK04296 thymidine kinase; Pro 74.6 1.6 3.5E-05 43.0 1.5 19 282-302 2-20 (190)
496 PRK12402 replication factor C 74.5 1.6 3.5E-05 45.6 1.6 17 284-302 38-54 (337)
497 PLN03025 replication factor C 74.5 1.9 4E-05 45.8 2.1 18 284-303 36-53 (319)
498 TIGR02239 recomb_RAD51 DNA rep 74.4 1.8 3.9E-05 46.5 1.9 21 280-302 94-114 (316)
499 PRK10982 galactose/methyl gala 74.3 1.8 4E-05 48.4 2.1 21 280-302 272-292 (491)
500 COG0194 Gmk Guanylate kinase [ 74.3 2 4.3E-05 43.4 2.0 20 281-302 3-22 (191)
No 1
>PRK04210 phosphoenolpyruvate carboxykinase; Provisional
Probab=100.00 E-value=6.4e-215 Score=1733.19 Aligned_cols=590 Identities=57% Similarity=1.029 Sum_probs=577.7
Q ss_pred cccCHHHHHHHHHHhhhcCCCcEEEeCCCHHHHHHHHHHHHHCCcccccc--CCCCcEEEeeCCCcccccCCCEEEEcCC
Q psy13077 27 SAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVP--KYENCWLARTNPADVARVESKTFICTQE 104 (630)
Q Consensus 27 ~~~~~~~~~~v~~~~~l~~p~~I~~~~gs~ee~~~L~~~~~~~Ge~~~L~--~~~g~~l~~t~p~d~aR~~~~tfIv~~~ 104 (630)
...|++|++||+|+++||+|++|||||||+||+++|+++|+++|++++|+ +++|||++||+|.||||+|++||||+++
T Consensus 7 ~~~n~~l~~wv~e~~~l~~Pd~v~~cdGS~ee~~~l~~~~v~~G~~~~L~~~k~~~~~~~rsdp~DvARve~rTfI~s~~ 86 (601)
T PRK04210 7 PTKNPKLLEWVAEVAELTQPDRVVWCDGSEEEYDRLRDQAVEAGTEIKLNPEKRPNSFLARSDPSDVARVEDRTFICSEK 86 (601)
T ss_pred CcCCHHHHHHHHHHHHhhCCCEEEEeCCCHHHHHHHHHHHHHcCCEeeccCCCCCceeeccCChhhhhhcccceEEecCc
Confidence 35689999999999999999999999999999999999999999999995 7999999999999999999999999999
Q ss_pred CcccCcCCCCCccCCCCCcCCHHHHHHHHHhhhhhhcCCCeEEEEeccccCCCCCCCccceEEccchHHHhhhhhcccCC
Q psy13077 105 KAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIG 184 (630)
Q Consensus 105 ~~d~gp~~~~gi~~~~n~~~~~~~~~~~L~~~~~g~m~GrtmyV~~~~~Gp~gsp~~~~gV~iTdsayv~l~m~im~R~~ 184 (630)
++|+||+ ||||+|++|+++|.++|+|||+||||||+||||||+|||++++|||||||||||||||||||++
T Consensus 87 ~~dagp~---------nnw~~p~e~~~~l~~lf~G~M~GRTMyVipfsmGP~gSp~s~~gVqiTDS~YVv~sm~imtR~g 157 (601)
T PRK04210 87 EEDAGPT---------NNWMDPAEMRETLKGLFKGCMRGRTMYVVPFSMGPLGSPFAKIGVEITDSPYVVHSMRIMTRMG 157 (601)
T ss_pred hhhcCCc---------cCcCCHHHHHHHHHHhcCCccCCCeEEEeeeeeCCCCCCcccceEEeeCCHHHHHhHHHHHhcc
Confidence 9999999 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhcCCCCCceEEEEecCCCCCCCCcCCCCCCCCcceEEEEcCCCCeEEEEccccccccccccceeehhhhhhhhhc
Q psy13077 185 TPVLNLLDADQPFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKR 264 (630)
Q Consensus 185 ~~~l~~~~~~~~Fv~~~hs~g~p~~~~~~~~~wpcn~e~~~I~~~~~~r~i~s~Gs~YgGnall~KK~~alrias~~a~~ 264 (630)
+++|+.++++++|||||||+|.|++.++.+++||||++ ++|+|+|++|+|||+|||||||||||||||||||||++|++
T Consensus 158 ~~~l~~l~~~~~Fv~~vHSvG~p~~~~~~~v~wpcn~~-r~i~h~pe~~~I~S~gSgYgGNaLLGkKc~ALRiAs~~ar~ 236 (601)
T PRK04210 158 KAVLDVLGEDGEFVPCVHSVGAPLEPGQKDVPWPCNDT-KYIVHFPETREIWSYGSGYGGNALLGKKCFALRIASVMARD 236 (601)
T ss_pred HHHHHhhCCCCceeeeeccCCCCCCCCCCCCCCCCCCC-eEEEEeCCCcEEEEecCCCCCCccchhHHHHHHHHHHHhHh
Confidence 99999999877999999999999999988999999977 79999999999999999999999999999999999999999
Q ss_pred cCcccccchhccccCCCCCEEEEEeEcCCccchhhhcccCCCCCCCeeEEeeccEEEEEECCCccEEEeccCCCeeEecc
Q psy13077 265 EGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDIAWMKFDKEGVLRAINPENGFFGVAP 344 (630)
Q Consensus 265 eGwLaeHm~i~gv~~p~G~~~~f~~afpSg~GKTtLam~~p~~pgwk~~lIGDDiaW~~~~~dG~l~a~NpE~G~fgk~~ 344 (630)
||||||||+|+||++|+|+++||+|||||||||||||||.|++|||||++|||||||||+++||+|||||||+|||||+|
T Consensus 237 eGWLAEHMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~~gwkv~~VGDDIAwm~~~~dG~l~AiNPE~GfFGVap 316 (601)
T PRK04210 237 EGWLAEHMLILGVTSPEGRKTYFAAAFPSACGKTNLAMLIPPIPGWKVETVGDDIAWIRPGEDGRLYAINPEAGFFGVAP 316 (601)
T ss_pred cccHHHhhHHheeeCCCCCEEEEEEecccccccccHhhcCCCCCCceeEEeecceeeeeECCCCcEEEEccCCCeeEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHhhccC-CceeEcceEcCCCceeccCCccCCCCCccccccCCCCCCCCCCCCCCCCCcceeecCCCCCCC
Q psy13077 345 GTSNKTNPIAMKTVFK-NTIFTNVASTSDGGVYWEGMEDEISPDVSITDWHNKPWKKSDGTQAAHPNSRFCTPASQCPTI 423 (630)
Q Consensus 345 g~s~~~~P~i~~ai~~-~tIf~NV~~~~dg~v~w~g~~~~~p~~~~~~dw~g~~~t~~~~~~~aHpNsRft~P~~~~pn~ 423 (630)
|||+++||+||++|++ |+|||||++|+||+|||||+++++| .+++||+|++|+|+++.|+||||||||+|++|||++
T Consensus 317 Gtn~~tnP~am~~l~~~n~IFTNValt~DG~vwWeG~~~~~P--~~~~dw~G~~W~p~~~~paaHPNsRFt~p~~q~p~i 394 (601)
T PRK04210 317 GTNEKTNPNAMATLKPGNVIFTNVALTDDGDVWWEGMTEEPP--AHLIDWQGNDWTPGSGEPAAHPNARFTVPASQCPNL 394 (601)
T ss_pred CCCCCcCHHHHHhcccCCeEEeeeEECCCCCeecCCCCCCCC--CcccccCCCcCCCCCCCCCCCCccceeccHHHCCcC
Confidence 9999999999999987 9999999999999999999999877 678999999999999999999999999999999999
Q ss_pred CCCCcCCCCcccceEEEeccCCCCCCceEeecCccceeeccccccchhhhhhcccCceeccCCccCCCCCCCChHHHHHH
Q psy13077 424 DPNWESHEGVPISAIIFGGRRPQGVPLVYESFDWQHGVFLGASMRSEATAAAEHKGKVIMHDPFAMRPFFGYNFGDYLKH 503 (630)
Q Consensus 424 ~~~~e~p~GvPi~aIiFg~rd~~glPpV~e~~~wq~gv~lGas~~Se~TAa~~g~~g~~~~dP~a~~PF~~y~~g~Y~~~ 503 (630)
+|+||+|+|||||||||||||++++|||+|+++||||||+||||.||+|||++|++|++++|||||+|||+||+|+|++|
T Consensus 395 dp~wedP~GVpIsaiiFGGRr~~t~PlV~ea~~W~hGV~~GAtm~SE~TAAa~G~~g~~r~dPmAmlpF~gy~~gdY~~h 474 (601)
T PRK04210 395 DPEWEDPAGVPISAIIFGGRRSDTVPLVTEAFDWQHGVYMGATMGSETTAAAEGKVGVVRRDPMAMLPFCGYNMGDYFQH 474 (601)
T ss_pred CccccCCCCCEEEEEEECCcCCCCCCeeEEccCccchheeecchhhHHHHHHhccCCcEeeCcchhccccCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCcEEEEeeeeeCCCCCcccCCCcchhHHHHHHHHhHhcCccceecCcccccCCCCCcCCCCCC-chhh
Q psy13077 504 WLSMEQRTNAKLPKVFHVNWFRKGSQGEFLWPGFGENIRVLDWILRRVENNKEIAEASPIGYIPKPEALITTNLA-SDVD 582 (630)
Q Consensus 504 wl~lg~~~~~~~pkif~VN~F~~g~~G~flWpG~G~n~RvL~wi~~r~~~G~~~~~~tp~G~iP~~~~l~~~Gl~-~~~~ 582 (630)
||+||++++++.||||+|||||||++|+|||||||+|+|||+||++|++ |++++++||+|+||++++||+.|++ ++.+
T Consensus 475 wl~~g~~~~~~~PkIF~VNwFrkd~~G~flWPGfgeN~RVL~Wi~~R~~-G~~~a~eTpiG~iP~~~dL~~~gl~~~~~~ 553 (601)
T PRK04210 475 WLDFGKKLGSKLPKIFGVNWFRKDEDGKFLWPGFGENMRVLKWIVDRVE-GEADAVETPIGYLPKYEDLDLLGLDYSEED 553 (601)
T ss_pred HHHHhcccCCCCCcEEEeeeeeecCCCCCcCCCCcchhHHHHHHHHhhc-CccCceecCCeecCCcccCCCcCCCCCHHH
Confidence 9999999866999999999999999999999999999999999999999 9999999999999999999999997 8899
Q ss_pred hHhhhcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHhhC
Q psy13077 583 LEELFSFDKSFWEQEVQDLQRYFNEQLGADLPTAIQAEIDALKQRIKQ 630 (630)
Q Consensus 583 ~~~~~~~d~~~w~~e~~~l~~~f~~~~~~~lP~ei~~~l~~~~~rl~~ 630 (630)
+.++|++|+++|++|+++++++|. ++|++||++|+++|++|++||++
T Consensus 554 ~~~lf~v~~~~w~~e~~~~~~~~~-~~~~~lP~~l~~~l~~l~~rl~~ 600 (601)
T PRK04210 554 YEKLFSVDVDEWLAELELIEELFE-KFGDRLPKELFEELEALKKRLLA 600 (601)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999997 68999999999999999999964
No 2
>PF00821 PEPCK: Phosphoenolpyruvate carboxykinase; InterPro: IPR008209 Phosphoenolpyruvate carboxykinase (PEPCK) catalyses the first committed (rate-limiting) step in hepatic gluconeogenesis, namely the reversible decarboxylation of oxaloacetate to phosphoenolpyruvate (PEP) and carbon dioxide, using either ATP or GTP as a source of phosphate. The ATP-utilising (4.1.1.49 from EC) and GTP-utilising (4.1.1.32 from EC) enzymes form two divergent subfamilies, which have little sequence similarity but which retain conserved active site residues. ATP-utilising PEPCKs are monomers or oligomers of identical subunits found in certain bacteria, yeast, trypanosomatids, and plants, while GTP-utilising PEPCKs are mainly monomers found in animals and some bacteria []. Both require divalent cations for activity, such as magnesium or manganese. One cation interacts with the enzyme at metal binding site 1 to elicit activation, while the second cation interacts at metal binding site 2 to serve as a metal-nucleotide substrate. In bacteria, fungi and plants, PEPCK is involved in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle. PEPCK helps to regulate blood glucose levels. The rate of gluconeogenesis can be controlled through transcriptional regulation of the PEPCK gene by cAMP (the mediator of glucagon and catecholamines), glucocorticoids and insulin. In general, PEPCK expression is induced by glucagon, catecholamines and glucocorticoids during periods of fasting and in response to stress, but is inhibited by (glucose-induced) insulin upon feeding []. With type II diabetes, this regulation system can fail, resulting in increased gluconeogenesis that in turn raises glucose levels []. PEPCK consists of an N-terminal and a catalytic C-terminal domain, with the active site and metal ions located in a cleft between them. Both domains have an alpha/beta topology that is partly similar to one another [, ]. Substrate binding causes PEPCK to undergo a conformational change, which accelerates catalysis by forcing bulk solvent molecules out of the active site []. PCK uses an alpha/beta/alpha motif for nucleotide binding, this motif differing from other kinase domains. GTP-utilising PEPCK has a PEP-binding domain and two kinase motifs to bind GTP and magnesium. This entry represents GTP-utilising phosphoenolpyruvate carboxykinase enzymes.; GO: 0004611 phosphoenolpyruvate carboxykinase activity, 0005525 GTP binding, 0006094 gluconeogenesis; PDB: 2FAH_A 2FAF_A 2QZY_B 2ZCI_D 3MOE_A 3DT7_B 2RKD_A 2RKA_A 2RK8_A 2QF2_B ....
Probab=100.00 E-value=1.7e-215 Score=1742.46 Aligned_cols=583 Identities=63% Similarity=1.139 Sum_probs=494.4
Q ss_pred HHHHHHhhhcCCCcEEEeCCCHHHHHHHHHHHHHCCccccc--cCCCCcEEEeeCCCcccccCCCEEEEcCCCcccCcCC
Q psy13077 35 SFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPV--PKYENCWLARTNPADVARVESKTFICTQEKAETVPDT 112 (630)
Q Consensus 35 ~~v~~~~~l~~p~~I~~~~gs~ee~~~L~~~~~~~Ge~~~L--~~~~g~~l~~t~p~d~aR~~~~tfIv~~~~~d~gp~~ 112 (630)
+||+|+++||+|++|||||||+||+++|+++++++|++++| .+++|||+|||+|.||||+|++||||+++++|+||+
T Consensus 1 ~fV~e~a~l~~P~~I~icdGS~eE~~~l~~~~~~~G~~~~L~~~~~~n~~l~~sdp~DvARve~~TfI~t~~~~d~~p~- 79 (586)
T PF00821_consen 1 EFVAEVAELCQPDSIYICDGSEEENDRLRDELVEQGEEIPLNPPKHPNCYLHRSDPSDVARVESRTFICTEDKEDAGPT- 79 (586)
T ss_dssp HHHHHHHHHH-BSEEEE----HHHHHHHHHHHHHTTSEEEE-TTTSBSEEEE---TTSSS--GGGEEEE-SSHHHHSTT-
T ss_pred CHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCEEeCCCCCCCCcEEEecCccccceecCceEEEcCCccccCCc-
Confidence 69999999999999999999999999999999999999999 689999999999999999999999999999999999
Q ss_pred CCCccCCCCCcCCHHHHHHHHHhhhhhhcCCCeEEEEeccccCCCCCCCccceEEccchHHHhhhhhcccCChHHhhhcC
Q psy13077 113 KPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLD 192 (630)
Q Consensus 113 ~~gi~~~~n~~~~~~~~~~~L~~~~~g~m~GrtmyV~~~~~Gp~gsp~~~~gV~iTdsayv~l~m~im~R~~~~~l~~~~ 192 (630)
||||+|++|+++|.++|+|||+||||||+||||||+|||++++||||||||||||||+||||+++++|+.++
T Consensus 80 --------~nw~~~~~~~~~l~~~f~G~M~GRtMyVipfsmGP~gsp~s~~gVqlTDS~YVv~sm~imtR~g~~v~~~l~ 151 (586)
T PF00821_consen 80 --------NNWMDPEEMKAELDELFPGCMKGRTMYVIPFSMGPIGSPFSKIGVQLTDSPYVVHSMRIMTRMGYAVLDRLG 151 (586)
T ss_dssp --------SSEE-HHHHHHHHHCCSTTTTTTSEEEEEEEEESSTTSTT-EEEEEEES-HHHHHHHHHHSEESHHHHHHHT
T ss_pred --------cCCCCHHHHHHHHHHhchhhhhhchHHhhHhhhCCCCCCCccceEEccCcHHHHHhHHHHHhcCHHHHHHhC
Confidence 699999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCceEEEEecCCCCCCCCcCCCCCCCCcceEEEEcCCCCeEEEEccccccccccccceeehhhhhhhhhccCcccccc
Q psy13077 193 ADQPFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHM 272 (630)
Q Consensus 193 ~~~~Fv~~~hs~g~p~~~~~~~~~wpcn~e~~~I~~~~~~r~i~s~Gs~YgGnall~KK~~alrias~~a~~eGwLaeHm 272 (630)
.+++|||||||+|+|+++++.+++||||+++++|+|+|++|+|||+||||||||||+||||||||||++|++||||||||
T Consensus 152 ~~~~Fv~~vHSvG~pl~~~~~~~~wpcn~~~~~I~h~p~~~~I~S~gsgYGGNaLlgKKc~aLRiAs~~ar~eGWLAEHM 231 (586)
T PF00821_consen 152 DDGEFVRCVHSVGAPLPPGQKDVNWPCNPDKRYIVHFPEEREIWSFGSGYGGNALLGKKCFALRIASVIARDEGWLAEHM 231 (586)
T ss_dssp TT--SEEEEEE-S--SSTSS--BTB---GGG-EEEEECCCTEEEEES--SHHHHSTCCCCCCCHHHHHHHHHHT-EEESE
T ss_pred CCCceEeeecccCCcCCCCCCCCCCCCCccceEEEEECCCCeEEEeCCCcCcchhhhhhhhhHHHHHHHHHhhhHHhhhh
Confidence 88899999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCEEEEEeEcCCccchhhhcccCCCCCCCeeEEeeccEEEEEECCCccEEEeccCCCeeEeccCCCCCCcH
Q psy13077 273 LILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDIAWMKFDKEGVLRAINPENGFFGVAPGTSNKTNP 352 (630)
Q Consensus 273 ~i~gv~~p~G~~~~f~~afpSg~GKTtLam~~p~~pgwk~~lIGDDiaW~~~~~dG~l~a~NpE~G~fgk~~g~s~~~~P 352 (630)
+|+||+||+|+++||+|||||||||||||||.|++|||||+|||||||||||+.||+|||||||+||||++||||+++||
T Consensus 232 lIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkve~VGDDIAWmr~~~dG~lrAiNPE~GfFGVapGtn~~tnP 311 (586)
T PF00821_consen 232 LILGITNPEGRKTYIAAAFPSACGKTNLAMLQPTLPGWKVETVGDDIAWMRFGEDGRLRAINPENGFFGVAPGTNMKTNP 311 (586)
T ss_dssp EEEEEE-TTS-EEEEEEE-TTTSSHHHHHT---SSTT-EEEEEESS-EEEEE-TTSBEEEE---SEEEEE-TT-STTT-H
T ss_pred heeeEecCCCCEEEEEEecCcccccccHHhcCCCCCCcEEEEeeccchheeEcCCCcEEEeecccceEEeccCCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCceeEcceEcCCCceeccCCccCCCCCccccccCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCcCCCC
Q psy13077 353 IAMKTVFKNTIFTNVASTSDGGVYWEGMEDEISPDVSITDWHNKPWKKSDGTQAAHPNSRFCTPASQCPTIDPNWESHEG 432 (630)
Q Consensus 353 ~i~~ai~~~tIf~NV~~~~dg~v~w~g~~~~~p~~~~~~dw~g~~~t~~~~~~~aHpNsRft~P~~~~pn~~~~~e~p~G 432 (630)
++|++|.+|||||||++|+||+|||+|+++++|. +++||+|+.|+++++.||||||||||+|++|||+++|+||+|+|
T Consensus 312 ~am~~l~~ntIFTNVa~t~dG~vwWeG~~~~~p~--~~~dw~G~~W~~~~~~paaHPNsRft~pa~qcp~i~p~wedp~G 389 (586)
T PF00821_consen 312 NAMATLGKNTIFTNVALTDDGDVWWEGMDEEPPE--HLIDWQGEPWTPESGEPAAHPNSRFTAPASQCPNIDPEWEDPKG 389 (586)
T ss_dssp HHHHHTTBSEEEES-EEETTS-EE-TT-SS---T---EE-TTSSEE-TTSSS-SS-TT-EEEEEGGGSTTB-TTTT-TT-
T ss_pred HHHHHhhccceEeeeeecCCCceeeccCCCCCCc--ccccCCCCcCCCCCCCCCCCCcccccCCHhHCCCCCccccCCCc
Confidence 9999999999999999999999999999999885 78999999999999999999999999999999999999999999
Q ss_pred cccceEEEeccCCCCCCceEeecCccceeeccccccchhhhhhcccCceeccCCccCCCCCCCChHHHHHHHHHHHHhhc
Q psy13077 433 VPISAIIFGGRRPQGVPLVYESFDWQHGVFLGASMRSEATAAAEHKGKVIMHDPFAMRPFFGYNFGDYLKHWLSMEQRTN 512 (630)
Q Consensus 433 vPi~aIiFg~rd~~glPpV~e~~~wq~gv~lGas~~Se~TAa~~g~~g~~~~dP~a~~PF~~y~~g~Y~~~wl~lg~~~~ 512 (630)
||||||||||||++|+|||+|+++||||||+||||+||+|||++|++|+++||||||+|||+||+|+|++|||+|++++.
T Consensus 390 VpIsaiiFGGRr~~tvPlV~ea~~W~HGV~~gAtm~SE~TAAa~g~~g~~~~dPmAmlpF~gy~~gdY~~hwL~~~~~~~ 469 (586)
T PF00821_consen 390 VPISAIIFGGRRSDTVPLVYEAFNWQHGVFLGATMRSEATAAAEGKVGVVRRDPMAMLPFCGYNMGDYLQHWLSMGKKLG 469 (586)
T ss_dssp EEEEEEEEEEBBSSSS-SEEE-SSHHHHHHHHHT-EEEE-TTSSS-TTEEEE-GGGTTTT-SS-HHHHHHHHHHHGGSTT
T ss_pred ceEEEEEEeccCCCCCCceEEccCCCceeEEeeeecccccchhccCCCceecCCccccccCcCCHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCcEEEEeeeeeCCCCCcccCCCcchhHHHHHHHHhHhcCccceecCcccccCCCCCcCCCCCC-chhhhHhhhcCCH
Q psy13077 513 AKLPKVFHVNWFRKGSQGEFLWPGFGENIRVLDWILRRVENNKEIAEASPIGYIPKPEALITTNLA-SDVDLEELFSFDK 591 (630)
Q Consensus 513 ~~~pkif~VN~F~~g~~G~flWpG~G~n~RvL~wi~~r~~~G~~~~~~tp~G~iP~~~~l~~~Gl~-~~~~~~~~~~~d~ 591 (630)
+++||||+|||||||++|+|||||||+|+|||+||++|++ |++.+++||||+||++++||+.||+ ++++++++|++|+
T Consensus 470 ~k~PkIF~VNwFrk~~~G~flWPGfgen~RVL~Wi~~R~~-g~~~a~~TPiG~iP~~~dL~~~gl~~~~~~~~~lfsv~~ 548 (586)
T PF00821_consen 470 RKLPKIFHVNWFRKDEDGKFLWPGFGENSRVLKWIERRVE-GEVEAVETPIGYIPKYEDLDLDGLDLSKEDYEELFSVDK 548 (586)
T ss_dssp GBS-EEEEEEST-B-TTSSBSS--GGGHHHHHHHHHHHHT-TSS-EEEETTEEEE-TTTS--TTSSSTTCTHHHHT---H
T ss_pred cCCCcEEEEEeeEEcCCCccccCCCcccHHHHHHHHHHhc-CccceeeCCCEecCCccccCCccCCCCHHHHHHhcCcCH
Confidence 7999999999999999999999999999999999999999 9999999999999999999999996 6789999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHhhC
Q psy13077 592 SFWEQEVQDLQRYFNEQLGADLPTAIQAEIDALKQRIKQ 630 (630)
Q Consensus 592 ~~w~~e~~~l~~~f~~~~~~~lP~ei~~~l~~~~~rl~~ 630 (630)
++|++|+++++++|.+ +|++||++|.++|++|++||++
T Consensus 549 ~~W~~E~~~~~~~~~~-~g~~lP~~l~~~l~~l~~rl~~ 586 (586)
T PF00821_consen 549 DFWLAEIEEIREYFDK-FGDDLPKELFEELEELEKRLKK 586 (586)
T ss_dssp HHHHHHHHHHHHHHHH-HGGGS-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHhhC
Confidence 9999999999999985 5999999999999999999975
No 3
>KOG3749|consensus
Probab=100.00 E-value=4.6e-213 Score=1666.13 Aligned_cols=614 Identities=69% Similarity=1.248 Sum_probs=604.5
Q ss_pred ceecceeeecccccccCHHHHHHHHHHhhhcCCCcEEEeCCCHHHHHHHHHHHHHCCccccccCCCCcEEEeeCCCcccc
Q psy13077 14 QEIRKFSLKHGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVAR 93 (630)
Q Consensus 14 ~~~~~~~~~~g~~~~~~~~~~~~v~~~~~l~~p~~I~~~~gs~ee~~~L~~~~~~~Ge~~~L~~~~g~~l~~t~p~d~aR 93 (630)
..++++||+||||..|+++|++||+++++||||+.|||||||++|+++|++.++++|...+|.+|+||||+||||.||||
T Consensus 25 ~~~~~vpv~kGd~~~L~~~V~~Fv~~~~eL~qP~~i~ICdGSe~E~~~l~~~l~e~g~~~~l~~ydn~~L~rtdp~DVar 104 (640)
T KOG3749|consen 25 PNIGQVPVLKGDLDSLPPAVRTFVEECAELCQPDGIHICDGSEFENQELLDALEEEGGLRPLPKYDNCWLARTDPRDVAR 104 (640)
T ss_pred cccCcceeeecccccCCHHHHHHHHHHHHhcCcceeEecCCcHHHHHHHHHHHHHhcCcccchhhhcceeecCChhhhhe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEcCCCcccCcCCCCCccCCCCCcCCHHHHHHHHHhhhhhhcCCCeEEEEeccccCCCCCCCccceEEccchHH
Q psy13077 94 VESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYV 173 (630)
Q Consensus 94 ~~~~tfIv~~~~~d~gp~~~~gi~~~~n~~~~~~~~~~~L~~~~~g~m~GrtmyV~~~~~Gp~gsp~~~~gV~iTdsayv 173 (630)
+|++||||+++++|..|++.+|+.+.++||||++.|+.++.+||+|||+||||||+||||||+|||.|++||||||||||
T Consensus 105 VeskT~i~t~~~~dtv~~~~eGv~~~lg~wms~~df~~~~~~rFpgcM~GRtMYVvPFSMGpvGsplskiGiqlTDspyv 184 (640)
T KOG3749|consen 105 VESKTVIVTSSKRDTVPGPPEGVEGQLGHWMSEEDFDFAVDERFPGCMKGRTMYVVPFSMGPVGSPLSKIGIQLTDSPYV 184 (640)
T ss_pred eccceEEeccccccccCCCcccccccccccCCHHHHHHHHhhcCCccccCceEEEEeeccCCCCCcchhceeEecCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcccCChHHhhhcCCCCCceEEEEecCCCCCCCCc-CCCCCCCCcceEEEEcCCCCeEEEEccccccccccccce
Q psy13077 174 VGSMRIMTRIGTPVLNLLDADQPFVKALHSVGTPVSGKHE-FPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKC 252 (630)
Q Consensus 174 ~l~m~im~R~~~~~l~~~~~~~~Fv~~~hs~g~p~~~~~~-~~~wpcn~e~~~I~~~~~~r~i~s~Gs~YgGnall~KK~ 252 (630)
|+|||||||++..+|+.++++ ||||||||+|.|++-.++ .++||||||+++|+|.|++|+|||+|||||||+||||||
T Consensus 185 V~smRimtR~g~~Vl~~l~~~-dFvrClHSVG~Prp~~~~~v~~wpcnPe~t~i~hkp~e~EI~s~GsgyGgnsllGkKc 263 (640)
T KOG3749|consen 185 VLSMRIMTRMGTPVLDALGDG-DFVRCLHSVGMPRPGQQKIVNPWPCNPERTLIAHKPDEREIWSFGSGYGGNSLLGKKC 263 (640)
T ss_pred eeehhHHHHhccHHHHHhccc-chhhhhhhcCCCCCcccCCCCCCCCCcceeEEeecCccceeeeeccCCCCCccccchh
Confidence 999999999999999999987 799999999999998777 667999999999999999999999999999999999999
Q ss_pred eehhhhhhhhhccCcccccchhccccCCCCCEEEEEeEcCCccchhhhcccCCCCCCCeeEEeeccEEEEEECCCccEEE
Q psy13077 253 FALRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDIAWMKFDKEGVLRA 332 (630)
Q Consensus 253 ~alrias~~a~~eGwLaeHm~i~gv~~p~G~~~~f~~afpSg~GKTtLam~~p~~pgwk~~lIGDDiaW~~~~~dG~l~a 332 (630)
|||||||.|+++||||||||+|+|||+|+|+++|++|||||+||||||||+.|++|||||+||||||||||||.||+|||
T Consensus 264 FalriaS~iak~eGWLAEhmlIlgITnP~g~k~~iaaafpSacgktnLam~~p~lPGwKV~cVgddiaWmkf~~dG~l~a 343 (640)
T KOG3749|consen 264 FALRIASRLAKDEGWLAEHMLILGITNPKGEKKYIAAAFPSACGKTNLAMMNPTLPGWKVECVGDDIAWMKFDADGRLRA 343 (640)
T ss_pred hhhhhhhhhhhhhhhHHHhHHHhcccCCCCCceEEEEecccccccchHhhcCCCCCCceEEEeccceeEEEecCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCeeEeccCCCCCCcHHHHhhccCCceeEcceEcCCCceeccCCccCCCCCccccccCCCCCCCCCCCCCCCCCcc
Q psy13077 333 INPENGFFGVAPGTSNKTNPIAMKTVFKNTIFTNVASTSDGGVYWEGMEDEISPDVSITDWHNKPWKKSDGTQAAHPNSR 412 (630)
Q Consensus 333 ~NpE~G~fgk~~g~s~~~~P~i~~ai~~~tIf~NV~~~~dg~v~w~g~~~~~p~~~~~~dw~g~~~t~~~~~~~aHpNsR 412 (630)
||||+||||++||||.++||++|+++++|||||||+.|.||.+||||++++++.++.+++|.|+.|+++++.||||||||
T Consensus 344 inPEngffgvapgts~~tnP~am~t~~~ntIftnvaeTsDg~~~weg~e~~l~~~v~it~wlgk~w~~~~~~~aahPnsr 423 (640)
T KOG3749|consen 344 INPENGFFGVAPGTSEKTNPNAMATIQKNTIFTNVAETSDGGVYWEGIEKPLAPGVTITSWLGKPWSIGDGEPAAHPNSR 423 (640)
T ss_pred ecccccccccCCCcccccCHHHHHHHHhccceeeeeeccCCceeeccccccccCCceeecccCCcccCCCCCcCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCCCCCCCcCCCCcccceEEEeccCCCCCCceEeecCccceeeccccccchhhhhhcccCceeccCCccCCCC
Q psy13077 413 FCTPASQCPTIDPNWESHEGVPISAIIFGGRRPQGVPLVYESFDWQHGVFLGASMRSEATAAAEHKGKVIMHDPFAMRPF 492 (630)
Q Consensus 413 ft~P~~~~pn~~~~~e~p~GvPi~aIiFg~rd~~glPpV~e~~~wq~gv~lGas~~Se~TAa~~g~~g~~~~dP~a~~PF 492 (630)
||+|++|||+++|.||+|.|||||||||||||+.|+|+|+|+++|+||||+||.|+||+|||++.+.++++||||||+||
T Consensus 424 f~~pa~Qcpii~p~Wesp~GVPI~AiiFggRRp~gvPLvyEa~~WehGVfvga~mrseataaae~~gkiimhdP~amrpf 503 (640)
T KOG3749|consen 424 FCAPASQCPIIDPAWESPEGVPISAIIFGGRRPAGVPLVYEANSWEHGVFVGAAMRSEATAAAEHKGKIIMHDPFAMRPF 503 (640)
T ss_pred ccCchhhCCCcCccccCCCCCceeEEEecCCCCCCCceEEEccccccceeeeehhhhhhhHHHHhcCceEeeCchhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhccCCCcEEEEeeeeeCCCCCcccCCCcchhHHHHHHHHhHhcCccceecCcccccCCCCCc
Q psy13077 493 FGYNFGDYLKHWLSMEQRTNAKLPKVFHVNWFRKGSQGEFLWPGFGENIRVLDWILRRVENNKEIAEASPIGYIPKPEAL 572 (630)
Q Consensus 493 ~~y~~g~Y~~~wl~lg~~~~~~~pkif~VN~F~~g~~G~flWpG~G~n~RvL~wi~~r~~~G~~~~~~tp~G~iP~~~~l 572 (630)
|+||+|+|++|||+|+++...+.||||||||||++.+|||||||||+|+|||+||++|+. |+..+++||||++|+.++|
T Consensus 504 ~gynfgkYl~HWL~m~~~~~~~~PkIFhvNwfrk~~~gKfLWPGfgeN~RVlewI~rR~~-ge~~~~~t~iG~vp~~~~l 582 (640)
T KOG3749|consen 504 FGYNFGKYLEHWLSMGQRPKAKLPKIFHVNWFRKDKEGKFLWPGFGENARVLEWIFRRVA-GEDSAKETPIGLVPKEGAL 582 (640)
T ss_pred ccCcHHHHHHHHHHhccCCCCCCCcEEEeeeeeeccCCCccCCCCcchhHHHHHHHHHhc-cchhcccccccccccCCce
Confidence 999999999999999999878999999999999999999999999999999999999998 8999999999999999999
Q ss_pred CCCCCCchhhhHhhhcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHhhC
Q psy13077 573 ITTNLASDVDLEELFSFDKSFWEQEVQDLQRYFNEQLGADLPTAIQAEIDALKQRIKQ 630 (630)
Q Consensus 573 ~~~Gl~~~~~~~~~~~~d~~~w~~e~~~l~~~f~~~~~~~lP~ei~~~l~~~~~rl~~ 630 (630)
||+|+. .+++.++|++++++|.+|+++||+||++|+|.+||++|.++|++|++|+.+
T Consensus 583 nL~gl~-~id~~~L~svpkdfW~qev~~ir~y~~~Qv~~dLP~~i~~el~~L~~rv~~ 639 (640)
T KOG3749|consen 583 NLSGLG-NIDLAELFSVPKDFWEQEVNDIRKYLEEQVGADLPPEIDAELDALEARVHQ 639 (640)
T ss_pred ecccCC-ccCHHHHhCCCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Confidence 999998 699999999999999999999999999999999999999999999999864
No 4
>cd00819 PEPCK_GTP Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity, this model describes the GTP-dependent group.
Probab=100.00 E-value=6.6e-211 Score=1699.20 Aligned_cols=575 Identities=63% Similarity=1.130 Sum_probs=560.6
Q ss_pred HHHHHHHHhhhcCCCcEEEeCCCHHHHHHHHHHHHHCCccccccCCCCcEEEeeCCCcccccCCCEEEEcCCCcccCcCC
Q psy13077 33 LKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDT 112 (630)
Q Consensus 33 ~~~~v~~~~~l~~p~~I~~~~gs~ee~~~L~~~~~~~Ge~~~L~~~~g~~l~~t~p~d~aR~~~~tfIv~~~~~d~gp~~ 112 (630)
|++||+|+++||||++|||||||+||+++|+++|+++|++++|+.++|||+|||+|.||||+|++||||+++++|+||+
T Consensus 1 l~~~v~e~~~l~~Pd~v~~cdGS~ee~~~l~~~~v~~G~~~~L~~~~~~~l~rs~p~DvARve~rTfI~s~~~~dagp~- 79 (579)
T cd00819 1 LLEWVEEAAELCQPDSVYICDGSEEEYDRLRDLMVEQGEEIRLNKYPNSYLARSDPSDVARVESRTFICSEDEEDAGPT- 79 (579)
T ss_pred CHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHhcCcEeeCCCCCCCEEEeCCccccceeccceEEecCchhccCCc-
Confidence 5789999999999999999999999999999999999999999877999999999999999999999999999999999
Q ss_pred CCCccCCCCCcCCHHHHHHHHHhhhhhhcCCCeEEEEeccccCCCCCCCccceEEccchHHHhhhhhcccCChHHhhhcC
Q psy13077 113 KPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLD 192 (630)
Q Consensus 113 ~~gi~~~~n~~~~~~~~~~~L~~~~~g~m~GrtmyV~~~~~Gp~gsp~~~~gV~iTdsayv~l~m~im~R~~~~~l~~~~ 192 (630)
||||+|++|+++|.++|+|||+||||||+||||||+|||++++|||||||||||||||||||++.++|+.++
T Consensus 80 --------nnw~~p~e~~~~l~~lf~G~M~GRTMYVipfsmGP~gSp~s~~gVqiTDS~YVv~sm~imtR~g~~vl~~lg 151 (579)
T cd00819 80 --------NNWMDPEEMKAELKELFKGCMRGRTMYVIPFSMGPLGSPISKIGVELTDSPYVVHSMRIMTRMGKAVLDALG 151 (579)
T ss_pred --------cccCCHHHHHHHHHhhCCcccCCCeEEEEeeecCCCCCCcccceEEEeCCHHHHHhHHHHHhcCHHHHHhcC
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEecCCCCCCCCcCCCCCCCCcceEEEEcCCCCeEEEEccccccccccccceeehhhhhhhhhccCcccccc
Q psy13077 193 ADQPFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHM 272 (630)
Q Consensus 193 ~~~~Fv~~~hs~g~p~~~~~~~~~wpcn~e~~~I~~~~~~r~i~s~Gs~YgGnall~KK~~alrias~~a~~eGwLaeHm 272 (630)
+ ++|||||||+|.|+..++++ +||||+++++|+|+|++++|||+||||||||||+||||||||||++|++||||||||
T Consensus 152 ~-~~Fv~~vHSvG~pl~~~~~~-~wpcn~~~~~I~h~pe~~~I~S~gSgYGGNaLlgKKcfaLRiAs~~ar~eGWLAEHM 229 (579)
T cd00819 152 E-GEFVPCLHSVGAPLSAGQKD-VWPCNPEKKYIVHFPEEREIWSFGSGYGGNALLGKKCFALRIASVMARDEGWLAEHM 229 (579)
T ss_pred c-CCeeeeeccCCCcCCCCCCC-CCCCCCCccEEEEEcCCCeEEEecCCcCCCcccchhHHHHHHHHHHhHhcCcHHHhh
Confidence 7 59999999999999998876 999999989999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCEEEEEeEcCCccchhhhcccCCCCCCCeeEEeeccEEEEEECCCccEEEeccCCCeeEeccCCCCCCcH
Q psy13077 273 LILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDIAWMKFDKEGVLRAINPENGFFGVAPGTSNKTNP 352 (630)
Q Consensus 273 ~i~gv~~p~G~~~~f~~afpSg~GKTtLam~~p~~pgwk~~lIGDDiaW~~~~~dG~l~a~NpE~G~fgk~~g~s~~~~P 352 (630)
+|+||++|+|+++||+|||||||||||||||.|++||||++||||||||||+++||+|||||||+|||||+||||.++||
T Consensus 230 lIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~~gwkv~~vGDDIAwm~~~~dG~l~AINPE~GfFGVapGtn~~tnP 309 (579)
T cd00819 230 LILGVTNPEGEKKYFAAAFPSACGKTNLAMLIPPLPGWKVETVGDDIAWMKFGEDGRLYAINPEAGFFGVAPGTNAKTNP 309 (579)
T ss_pred HHheeeCCCCCEEEEEEEcccccccccHhhcCCCCCCceeEEeccceeeeEECCCCcEEEEcCCCCeeEeCCCCCCCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCceeEcceEcCCCceeccCCccCCCCCccccccC--CCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCcCC
Q psy13077 353 IAMKTVFKNTIFTNVASTSDGGVYWEGMEDEISPDVSITDWH--NKPWKKSDGTQAAHPNSRFCTPASQCPTIDPNWESH 430 (630)
Q Consensus 353 ~i~~ai~~~tIf~NV~~~~dg~v~w~g~~~~~p~~~~~~dw~--g~~~t~~~~~~~aHpNsRft~P~~~~pn~~~~~e~p 430 (630)
++|++|++|||||||++|+||+|||||+++++| .+++||+ |+.|+++++.||||||||||+|++|||+++|+||+|
T Consensus 310 ~am~~l~~n~IFTNVa~t~DG~vwWeG~~~e~p--~~~~~w~~~G~~w~~~~~~paAHPNsRFt~p~~q~p~idp~wedP 387 (579)
T cd00819 310 NAMATLHKNTIFTNVALTEDGDVWWEGLTEEPP--EHLTDWQGLGKRWTPGDGEPAAHPNSRFTAPASQCPNIDPEWENP 387 (579)
T ss_pred HHHHHhcCCceEEEEeEcCCCCeeCCCCCCCCC--CceeeccCCCCCCCCCCCCcCCCCcccccccHHHCCcCCccccCC
Confidence 999999999999999999999999999999887 5789999 999999999999999999999999999999999999
Q ss_pred CCcccceEEEeccCCCCCCceEeecCccceeeccccccchhhhhhcccCceeccCCccCCCCCCCChHHHHHHHHHHHHh
Q psy13077 431 EGVPISAIIFGGRRPQGVPLVYESFDWQHGVFLGASMRSEATAAAEHKGKVIMHDPFAMRPFFGYNFGDYLKHWLSMEQR 510 (630)
Q Consensus 431 ~GvPi~aIiFg~rd~~glPpV~e~~~wq~gv~lGas~~Se~TAa~~g~~g~~~~dP~a~~PF~~y~~g~Y~~~wl~lg~~ 510 (630)
+|||||||||||||++++|||+|+++|+||||+||||.||+|||++|++|+++||||||+|||+||+|+|++|||+||++
T Consensus 388 ~GVpI~aiiFGGRr~~tvPlV~ea~~W~hGV~~GA~m~SE~TAAa~g~~g~~r~dPmAmlPF~gy~~gdY~~hwL~~g~~ 467 (579)
T cd00819 388 EGVPIDAIIFGGRRPDTVPLVYEAFNWNHGVFIGASMGSETTAAAEGKVGVVRRDPFAMLPFCGYNMGDYFRHWLSFGRK 467 (579)
T ss_pred CCCEEEEEEECCcCCCCCCeEEEccCcccceeeechhhhHHHHHhhcCCCcEEeCcccccccCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCcEEEEeeeeeCCCCCcccCCCcchhHHHHHHHHhHhcCccceecCcccccCCCCCcCCCCCC-chhhhHhhhcC
Q psy13077 511 TNAKLPKVFHVNWFRKGSQGEFLWPGFGENIRVLDWILRRVENNKEIAEASPIGYIPKPEALITTNLA-SDVDLEELFSF 589 (630)
Q Consensus 511 ~~~~~pkif~VN~F~~g~~G~flWpG~G~n~RvL~wi~~r~~~G~~~~~~tp~G~iP~~~~l~~~Gl~-~~~~~~~~~~~ 589 (630)
++++.||||+|||||||++|+|||||||||+|||+||++|++ |++.+++||||+||++++||++||+ +..++ ++.+
T Consensus 468 ~~~~~PkIF~VNwFrkd~~G~flwpgfgdn~rvL~Wi~~R~~-g~~~a~eTpiG~iP~~~~ldl~gL~~~~~~~--l~~~ 544 (579)
T cd00819 468 LGAKLPKIFGVNWFRKDEDGKFLWPGFGENSRVLKWIFRRVE-GKANAIETPIGYIPKYGDLDLKGLGKSKLDF--LFSV 544 (579)
T ss_pred ccCCCCcEEEEeeeeecCCCCCcCCCccchhhHHHHHHHHhc-CCcCceecCCeecCCccccCccCCCCchhhh--hcCC
Confidence 867999999999999999999999999999999999999999 9999999999999999999999997 44444 9999
Q ss_pred CHHHHHHHHHHHHHHHHHhhCC-CccHHHHHHHHHH
Q psy13077 590 DKSFWEQEVQDLQRYFNEQLGA-DLPTAIQAEIDAL 624 (630)
Q Consensus 590 d~~~w~~e~~~l~~~f~~~~~~-~lP~ei~~~l~~~ 624 (630)
|+++|++|+.+++++|+ ++++ +||++|.++|++|
T Consensus 545 ~~~~w~~e~~~i~~~~~-~~~~~~lP~~l~~~l~~l 579 (579)
T cd00819 545 DEDYWLQELIEIEEYLE-KIGRADLPQELFDELEAL 579 (579)
T ss_pred CHHHHHHHHHHHHHHHH-HhCCCCCCHHHHHHHhcC
Confidence 99999999999999997 5677 9999999999875
No 5
>COG1274 PckA Phosphoenolpyruvate carboxykinase (GTP) [Energy production and conversion]
Probab=100.00 E-value=8.5e-209 Score=1643.24 Aligned_cols=599 Identities=55% Similarity=1.003 Sum_probs=583.4
Q ss_pred ceeeecccccccCHHHHHHHHHHhhhcCCCcEEEeCCCHHHHHHHHHHHHHCCcccccc--CCCCcEEEeeCCCcccccC
Q psy13077 18 KFSLKHGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVP--KYENCWLARTNPADVARVE 95 (630)
Q Consensus 18 ~~~~~~g~~~~~~~~~~~~v~~~~~l~~p~~I~~~~gs~ee~~~L~~~~~~~Ge~~~L~--~~~g~~l~~t~p~d~aR~~ 95 (630)
.++-+..+-...|+.+++||+|+++||+|++||+||||+||+++|+++|++.|++++|+ +++||||+||+|.||||+|
T Consensus 5 ~~~~l~~~~~i~n~~l~~wi~ev~~l~~P~~V~~cdGS~eE~~~l~~~~v~aG~~i~Ln~~~~pn~~l~~s~psDvAR~e 84 (608)
T COG1274 5 PIDGLDKLAPINNQGLKSWIEEVAELTEPDDVVVCDGSPEEYDYLCWKMVEAGEEIKLNPEKHPNSYLARSNPSDVARVE 84 (608)
T ss_pred cccccccccccccHHHHHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHHHHhcCceeecCcccCCCceEeecChhhhhhhh
Confidence 44555566678999999999999999999999999999999999999999999999997 7999999999999999999
Q ss_pred CCEEEEcCCCcccCcCCCCCccCCCCCcCCHHHHHHHHHhhhhhhcCCCeEEEEeccccCCCCCCCccceEEccchHHHh
Q psy13077 96 SKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVG 175 (630)
Q Consensus 96 ~~tfIv~~~~~d~gp~~~~gi~~~~n~~~~~~~~~~~L~~~~~g~m~GrtmyV~~~~~Gp~gsp~~~~gV~iTdsayv~l 175 (630)
++||||++++.++||+ ||||+|+++++++.++|+|||+||||||+||||||++||++++||||||||||||
T Consensus 85 ~rTfI~s~~~~~agPt---------nNw~~p~e~~~~m~~l~~G~MrGrtmyVvpf~mGP~~Spf~~~gVeiTDS~YVv~ 155 (608)
T COG1274 85 ERTFICSPKEEDAGPT---------NNWMDPQEMRSEMNELFRGCMRGRTMYVVPFCMGPLNSPFTILGVELTDSPYVVH 155 (608)
T ss_pred hceeeecccccccCCc---------cCCCCHHHHHHHHHHHHHhhhcCceEEEEeeeeCCCCCCcccceeEeecCceeee
Confidence 9999999999999999 6999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCChHHhhhcCCCCCceEEEEecCCCCCCCCcCCCCCCCCcceEEEEcCCCCeEEEEccccccccccccceeeh
Q psy13077 176 SMRIMTRIGTPVLNLLDADQPFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFAL 255 (630)
Q Consensus 176 ~m~im~R~~~~~l~~~~~~~~Fv~~~hs~g~p~~~~~~~~~wpcn~e~~~I~~~~~~r~i~s~Gs~YgGnall~KK~~al 255 (630)
||+|||||+.++++.+++++.|+|||||+|.|+.+|+++++||||.- .+|.|+|++++|||+||||||||||+|||+||
T Consensus 156 sm~imtRmG~~vl~~lG~~g~Fvk~vHSvG~pL~pg~~dv~wPcn~~-k~i~hfped~~v~S~gsgYGGNall~KKC~AL 234 (608)
T COG1274 156 SMRIMTRMGKEVLEKLGDDGNFVKCVHSVGKPLDPGQKDVAWPCNET-KYIRHFPEDREVWSFGSGYGGNALLGKKCLAL 234 (608)
T ss_pred ehHHHHHHHHHHHHhcCCCCceeeeeeccCCCCCCCcccCcCCcccc-cceeecCCCcceEeecCCccchhhhhhhHHHH
Confidence 99999999999999999988899999999999999999999999955 69999999999999999999999999999999
Q ss_pred hhhhhhhhccCcccccchhccccCCCCCEEEEEeEcCCccchhhhcccCCCCCCCeeEEeeccEEEEEECCCccEEEecc
Q psy13077 256 RIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDIAWMKFDKEGVLRAINP 335 (630)
Q Consensus 256 rias~~a~~eGwLaeHm~i~gv~~p~G~~~~f~~afpSg~GKTtLam~~p~~pgwk~~lIGDDiaW~~~~~dG~l~a~Np 335 (630)
||||++|++||||||||+|++|++|+|+++||+|||||||||||||||.|++||||++|||||||||||..||+|||+||
T Consensus 235 Rias~~A~~EGWLAEHMlil~v~~PeGk~~yftaAFPSacGKTnlAMi~p~~pGWk~~~igDDIawik~~~DG~lyAvNP 314 (608)
T COG1274 235 RIASVMARDEGWLAEHMLILGVTNPEGKKYYFTAAFPSACGKTNLAMIPPTIPGWKAETIGDDIAWIKFGKDGRLYAVNP 314 (608)
T ss_pred HHHHHHhhhhhhHhhhheeeEecCCCCceEEEEeecccccCccchhhcCCCCCCcceeeccCceeeeeccCCCceEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEeccCCCCCCcHHHHhhcc-CCceeEcceEcCCCceeccCCccCCCCCccccccCCCCCCCC-CCCCCCCCCcce
Q psy13077 336 ENGFFGVAPGTSNKTNPIAMKTVF-KNTIFTNVASTSDGGVYWEGMEDEISPDVSITDWHNKPWKKS-DGTQAAHPNSRF 413 (630)
Q Consensus 336 E~G~fgk~~g~s~~~~P~i~~ai~-~~tIf~NV~~~~dg~v~w~g~~~~~p~~~~~~dw~g~~~t~~-~~~~~aHpNsRf 413 (630)
|.|||||+||||.++||+||++|+ .|+|||||++|+||+|||||++.++| .+++||+|+.|+++ .++|||||||||
T Consensus 315 E~GfFGVapGtn~~tnpnam~tl~~~n~IFTNV~lT~DGdvwWEG~~~~~p--~~l~dw~G~~w~~~~~g~paAHpNsRf 392 (608)
T COG1274 315 EIGFFGVAPGTNEKTNPNAMATLHSGNTIFTNVALTDDGDVWWEGLEGEPP--EELIDWKGNDWRPGETGEPAAHPNSRF 392 (608)
T ss_pred ccceEEeecCCCccCChhHHHHhccCceEEeeeeecCCCCccccCCCCCCc--cccccCCCCccCCCCCCCCCCCCCccc
Confidence 999999999999999999999998 89999999999999999999999877 57899999999995 488999999999
Q ss_pred eecCCCCCCCCCCCcCCCCcccceEEEeccCCCCCCceEeecCccceeeccccccchhhhhhcccCceeccCCccCCCCC
Q psy13077 414 CTPASQCPTIDPNWESHEGVPISAIIFGGRRPQGVPLVYESFDWQHGVFLGASMRSEATAAAEHKGKVIMHDPFAMRPFF 493 (630)
Q Consensus 414 t~P~~~~pn~~~~~e~p~GvPi~aIiFg~rd~~glPpV~e~~~wq~gv~lGas~~Se~TAa~~g~~g~~~~dP~a~~PF~ 493 (630)
|+|++|||+++|+|++|.|||||||||||||++++|||+|+++|+|||+|||+|.||+|||++|++|+++||||||+|||
T Consensus 393 t~pl~~~P~ld~ew~dP~GVpi~aiiFGgRr~~TvPlV~EA~~W~HGV~mGA~m~Se~TAA~~Gk~G~lr~dPmAmLpF~ 472 (608)
T COG1274 393 TVPLSQCPNLDPEWDDPEGVPIDAIIFGGRRPTTVPLVTEAFDWEHGVFMGATMGSETTAAAEGKVGVLRRDPMAMLPFC 472 (608)
T ss_pred ccchhhCCccCccccCCCCceEeeEEecCcCCcccCceeeecccccceeeeeccccchhhhhhccccceecCcchhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhccCCCcEEEEeeeeeCCCCCcccCCCcchhHHHHHHHHhHhcCccceecCcccccCCCCCcC
Q psy13077 494 GYNFGDYLKHWLSMEQRTNAKLPKVFHVNWFRKGSQGEFLWPGFGENIRVLDWILRRVENNKEIAEASPIGYIPKPEALI 573 (630)
Q Consensus 494 ~y~~g~Y~~~wl~lg~~~~~~~pkif~VN~F~~g~~G~flWpG~G~n~RvL~wi~~r~~~G~~~~~~tp~G~iP~~~~l~ 573 (630)
+||+++|++|||+||+|++++.||||.|||||+|++|+|||||||||+|||+||++|++ |.+.+++||||+||++|+||
T Consensus 473 gyn~~dYf~hwl~~G~k~~~k~PKIF~VNwFrr~e~G~Flwpgf~en~rvL~Wi~~R~e-~~~~a~eTpIG~iP~~edL~ 551 (608)
T COG1274 473 GYNMGDYFRHWLEFGRKLRDKLPKIFGVNWFRRGEDGRFLWPGFGENSRVLKWIVDRIE-GDANAIETPIGYIPKYEDLN 551 (608)
T ss_pred cccHHHHHHHHHHHHHhhhccCCcEEEEEeEEEcCCCcEeCCCcccchhhhhhHHHHhc-cccCccccccccccchhhcc
Confidence 99999999999999999988999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCC-chhhhHhhhcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHhhC
Q psy13077 574 TTNLA-SDVDLEELFSFDKSFWEQEVQDLQRYFNEQLGADLPTAIQAEIDALKQRIKQ 630 (630)
Q Consensus 574 ~~Gl~-~~~~~~~~~~~d~~~w~~e~~~l~~~f~~~~~~~lP~ei~~~l~~~~~rl~~ 630 (630)
+.||+ +..+++++|.+|.+.|++|+++++++|. +||+++|++|++||+++++||.+
T Consensus 552 ~~Gld~s~ed~~~~f~id~~~w~~e~~~I~e~~~-~~g~~iP~~l~~e~~~~k~Rl~~ 608 (608)
T COG1274 552 LDGLDYSKEDVEKLFTIDAEGWLAEIERIWEYYS-FFGNKIPEELLDELEALKERLGK 608 (608)
T ss_pred cccccCCHHHHHHHhCcCHHHHHHHHHHHHHHHH-HhcccCcHHHHHHHHHHHHHhcC
Confidence 99999 8899999999999999999999999996 79999999999999999999974
No 6
>cd01919 PEPCK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).
Probab=100.00 E-value=2.1e-125 Score=1035.11 Aligned_cols=493 Identities=43% Similarity=0.658 Sum_probs=436.2
Q ss_pred CcEEEeCCCHHHHHHHHHHHHHC-CccccccCCCCcEEEeeCCCcccccCCCEEEEcCCCcccCcCCCCCccCCCCCcCC
Q psy13077 47 SDVHICDGSEREYKELIDLMVKD-KTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDTKPGVKGTLGNWIS 125 (630)
Q Consensus 47 ~~I~~~~gs~ee~~~L~~~~~~~-Ge~~~L~~~~g~~l~~t~p~d~aR~~~~tfIv~~~~~d~gp~~~~gi~~~~n~~~~ 125 (630)
+.||||+.. ++|+++|+++ ||++.+ +|++|+++++.||||||+|||||+++.++.++.-++ -|+..|+||+
T Consensus 1 ~~v~~n~~~----~~L~e~~~~~~g~~~~~---~~g~l~~~tg~~tgRsp~dkfIv~~~~~~~~~~w~~-~w~~~N~~~~ 72 (515)
T cd01919 1 DHIHINDEN----GRLLQQMLEEYGILRLT---KNGALAVTDPRDTGRSPSDKVIVTQDQRRTVPIPKT-GLSQLNRWLS 72 (515)
T ss_pred CceEECCCH----HHHHHHHHHhcCCEEEC---CCceEEECCCCccccCCCceEEeCCCccccCccccc-cccccCCCCC
Confidence 469999955 5599999999 987744 688899999999999999999999999864442101 0235699999
Q ss_pred HHHHHHHHHhhhhhhcCCCeEEEEeccccCCCCCCCccceEEccchHHHhhhhhcccCCh-HHhhhcCCCCCceEEEEec
Q psy13077 126 PQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGT-PVLNLLDADQPFVKALHSV 204 (630)
Q Consensus 126 ~~~~~~~L~~~~~g~m~GrtmyV~~~~~Gp~gsp~~~~gV~iTdsayv~l~m~im~R~~~-~~l~~~~~~~~Fv~~~hs~ 204 (630)
+++|++.+...|.++|+||+|||+|++||| +++.++.+++|||+|||+|||++|+|++. ++|+.+++ .|+.|+||+
T Consensus 73 ~~~~~~~~~~~~~~~m~gr~myV~d~~~G~-~~~~~~~~r~it~~ay~~lf~~~m~~~p~~~~l~~~~~--p~~~ii~~~ 149 (515)
T cd01919 73 EEDFEKAFNARFPGLMKGRTLFVVDFFMGP-GSPLRLIVRELTDSPYVAAFMRIMTIMPTDEELAAFGD--PDVKCLNSV 149 (515)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeceECC-CCcccccEEEEEChHHHHHHHHHhccCCChHHHhhCCC--CCEEEEeCC
Confidence 999997555558899999999999999999 77777777779999999999999997777 89999864 355599999
Q ss_pred CCCCCCCCcCCCCCCCCcceEEEEcCCCCeEEEEccccccccccccceeehhhhhhhhhccCcccccchhccccCCCCCE
Q psy13077 205 GTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHMLILGITNPEGQK 284 (630)
Q Consensus 205 g~p~~~~~~~~~wpcn~e~~~I~~~~~~r~i~s~Gs~YgGnall~KK~~alrias~~a~~eGwLaeHm~i~gv~~p~G~~ 284 (630)
|.|+++.+ |||++++++|+|||++|+|||+||+|+|| +|||+ ||+|+++++++|||+|||+++++ ++|+.
T Consensus 150 g~~~~~~~----w~g~~s~~~I~~~~~~~~i~i~Gt~Y~Ge---~KK~~-l~~~~~l~~~~g~L~~H~s~~~~--~~g~~ 219 (515)
T cd01919 150 GCPLPLQK----WPGLPSLTLVAHNPDRREQIIFGTGYGGE---MKKGF-LRMMSRLAPEEGWLAMHMSANVG--TNGDV 219 (515)
T ss_pred CCcCCccC----CCCCCCCcEEEEEcccCEEEEecCccccc---hHHHH-HHHHHHHHHhcCceeeeceeecc--CCCCE
Confidence 99988754 88876668999999999999999999998 99998 99999999999999999998754 46776
Q ss_pred EEEEeEcCCccchhhhcccCCCCCCCeeEEeeccEEEEEECCCccEEEeccCCCeeEeccCCCCCCcHHHHhhccCCcee
Q psy13077 285 KYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDIAWMKFDKEGVLRAINPENGFFGVAPGTSNKTNPIAMKTVFKNTIF 364 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam~~p~~pgwk~~lIGDDiaW~~~~~dG~l~a~NpE~G~fgk~~g~s~~~~P~i~~ai~~~tIf 364 (630)
+.|| ||||||||||||+ |++++||||++|++ ++| +||||+|||||++|||+++||+||+||++|+||
T Consensus 220 ~~~~--GlSGtGKTTLa~~------~~~~ligDD~~~w~--~~g---v~N~EgGcyak~~gls~e~eP~i~~ai~~~ail 286 (515)
T cd01919 220 LVFF--GLSGTGKTTLSMD------PKRELIGDDEHWWK--DDG---VFNPEGGCYAKAIGLSVKTEPNIYKAIRKNAIF 286 (515)
T ss_pred EEEE--ecccCCCcccccC------CCcCeecccEEEEe--CCC---EEecCCceEEEecCCCcccCHHHHHHhcCCcEE
Confidence 6666 9999999999993 56999999998764 688 799999999999999999999999999999999
Q ss_pred EcceEcCCCceeccCCccCCCCCccccccCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCcCCCCcccceEEEeccC
Q psy13077 365 TNVASTSDGGVYWEGMEDEISPDVSITDWHNKPWKKSDGTQAAHPNSRFCTPASQCPTIDPNWESHEGVPISAIIFGGRR 444 (630)
Q Consensus 365 ~NV~~~~dg~v~w~g~~~~~p~~~~~~dw~g~~~t~~~~~~~aHpNsRft~P~~~~pn~~~~~e~p~GvPi~aIiFg~rd 444 (630)
|||++|+||+|||+|++ +|||||||||+++|||++++|++ |+||++|||||||
T Consensus 287 eNV~~d~~g~v~~~~~s-------------------------~t~NtR~~yP~~~i~n~~~~~~~--g~~~~~IiFltrd 339 (515)
T cd01919 287 ENVAETSDGGIDFEDIS-------------------------AHPNTRVCYPASHIPIIDAAWES--AGHIEGVIFLTRD 339 (515)
T ss_pred EeeeEcCCCCEeCCCCC-------------------------CCchheEEeEHHhCCCCCCcccc--CCCccEEEEEecC
Confidence 99999999999999852 46899999999999999999887 8888999999999
Q ss_pred CCC-CCceEeecCccceeeccccccchhhhh--hcccCceeccCCccCCCCCCCChHHHHHHHHHHHHhhccCCCcEEEE
Q psy13077 445 PQG-VPLVYESFDWQHGVFLGASMRSEATAA--AEHKGKVIMHDPFAMRPFFGYNFGDYLKHWLSMEQRTNAKLPKVFHV 521 (630)
Q Consensus 445 ~~g-lPpV~e~~~wq~gv~lGas~~Se~TAa--~~g~~g~~~~dP~a~~PF~~y~~g~Y~~~wl~lg~~~~~~~pkif~V 521 (630)
++| ||||++|+ |+||+|.++|..|+.||+ +.+++++++|+||+|+|||+|||++|++||++++++ +.|+||+|
T Consensus 340 a~gvlPpV~~lt-~eqavy~f~sg~T~ktAgteag~~~p~~~fs~cf~~PFl~~~p~~Ya~~l~e~~~~---~~~~i~lv 415 (515)
T cd01919 340 AFGVVPPVYRLT-WQQGVFVFAAGRTAATAGTEAGHKGKIPMFSPCFGRPFLGYHFTKYLEHLLSMMQH---PLPKIFLV 415 (515)
T ss_pred CCCCCCcEEEcc-HHHHHHHHHhhhhhhhcchhcccccCceeecccccCCcccCCHHHHHHHHHHHHhh---cCCcEEEE
Confidence 997 89999999 777777666666667776 444677888999999999999999999999966554 79999999
Q ss_pred eeeeeCCCCCcccCCCcchhHHHHHHHHhHhcCccceecCc-ccc-cCCCCCcCCCCCCchhhhHhhhcCCHHHHHHHHH
Q psy13077 522 NWFRKGSQGEFLWPGFGENIRVLDWILRRVENNKEIAEASP-IGY-IPKPEALITTNLASDVDLEELFSFDKSFWEQEVQ 599 (630)
Q Consensus 522 N~F~~g~~G~flWpG~G~n~RvL~wi~~r~~~G~~~~~~tp-~G~-iP~~~~l~~~Gl~~~~~~~~~~~~d~~~w~~e~~ 599 (630)
|||++|.+|+++||+++++.|||+||+++.+ ++++++++| ||+ ||++ |+|+|.+++.|+.+|.+++.|+++++
T Consensus 416 Ntg~~gg~G~g~r~~~~~tr~il~~i~~g~~-~~~~~~~~pif~~~iP~~----~~gv~~~~l~p~~~w~~~~~~~~~~~ 490 (515)
T cd01919 416 NTGRKGKEGKFKRPGFGETRAIIDAIFNGIL-DKAETKLTPIFNLYIPKA----LNLVGLGHLNPRNMMELFSQSKEFWD 490 (515)
T ss_pred eccccCCCCCcccCCHHHHHHHHHHHHhCCc-CCCCeEEccccCEEeCcc----cCCCCcccCCHHHhhhhhhhhHHHHH
Confidence 9999998899999999999999999999999 899999999 666 9997 99999999999999999999999999
Q ss_pred HHHHHHHHhh
Q psy13077 600 DLQRYFNEQL 609 (630)
Q Consensus 600 ~l~~~f~~~~ 609 (630)
+|++.|+++|
T Consensus 491 ~l~~~f~~nf 500 (515)
T cd01919 491 KLVEDFEKYF 500 (515)
T ss_pred HHHHHHHHHH
Confidence 9999888755
No 7
>PLN02597 phosphoenolpyruvate carboxykinase [ATP]
Probab=100.00 E-value=5.2e-106 Score=873.87 Aligned_cols=489 Identities=18% Similarity=0.195 Sum_probs=438.8
Q ss_pred hhhcCCCcEEEeCCCHHHHHHHHHHHHHCCccccccCCCCcEEEeeCCCcccccCCCEEEEcCCCcccCcCCCCCccC-C
Q psy13077 41 VELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDTKPGVKG-T 119 (630)
Q Consensus 41 ~~l~~p~~I~~~~gs~ee~~~L~~~~~~~Ge~~~L~~~~g~~l~~t~p~d~aR~~~~tfIv~~~~~d~gp~~~~gi~~-~ 119 (630)
....++..||+|+..++ |+++|++++|+. +....|++++.|+.+ |||||+|+|||.++.. ++.||| .
T Consensus 27 ~~~~~~~~v~~nl~~~~----Lye~Al~~~eG~-l~~~~GaL~v~TGk~-TGRSP~DKfIV~d~~t------~~~iwWg~ 94 (555)
T PLN02597 27 DSGLKFTHVLYNLSPAE----LYEQAIKYEKGS-FITSTGALATLSGAK-TGRSPKDKRVVRDETT------EDELWWGK 94 (555)
T ss_pred cccCCcceEEeCCCHHH----HHHHHHHhCCCe-EEecCCCEEecCCCc-CCCCcccceecCCCCc------ccceeccC
Confidence 34567889999999977 999999999987 443589977766666 9999999999988774 456666 2
Q ss_pred --CCCcCCHHHHHHHHHhhhhhhcCCCe-EEEEeccccCCCCCCCccceE-EccchHHHhhhhhcc-cCChHHhhhc-CC
Q psy13077 120 --LGNWISPQDYEEAIMQRFPGCMKGRT-MYVIPFSMGPVGSPLSKIGVE-ITDSPYVVGSMRIMT-RIGTPVLNLL-DA 193 (630)
Q Consensus 120 --~n~~~~~~~~~~~L~~~~~g~m~Grt-myV~~~~~Gp~gsp~~~~gV~-iTdsayv~l~m~im~-R~~~~~l~~~-~~ 193 (630)
.|++++++.|+ .|++++..++++|+ +||++.++|+ +|.+++.|| ||+.|||+|+|+.|+ |+..++++.+ .+
T Consensus 95 g~vN~p~~~~~f~-~l~~~~~~~l~~~~~lfv~D~~~Ga--d~~~r~~vRvite~aw~alF~~nmfirP~~~el~~f~~P 171 (555)
T PLN02597 95 GSPNIEMDEETFL-VNRERAVDYLNSLDKVFVNDQFLNW--DPENRIKVRIVSARAYHSLFMHNMCIRPTPEELEDFGTP 171 (555)
T ss_pred CccCccCCHHHHH-HHHHHHHHHHccCCCEEEEeeeecc--CccceeeEEEEeCHHHHHHHHHhcCCCCChHHhccCCCC
Confidence 69999999999 59999999999876 9999999999 999999999 899999999999999 9999999998 56
Q ss_pred CCCceEEEEecCCCCCCCCcCCCCCCCCcceEEEEcCCCCeEEEEccccccccccccceeehhhhhhhhhccCcccccch
Q psy13077 194 DQPFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHML 273 (630)
Q Consensus 194 ~~~Fv~~~hs~g~p~~~~~~~~~wpcn~e~~~I~~~~~~r~i~s~Gs~YgGnall~KK~~alrias~~a~~eGwLaeHm~ 273 (630)
||+ ++|+++.+.++.. + +++|+ ++|++|+++++++|+||.|+|| +||++ |++|+++++++|+|+|||+
T Consensus 172 --dft-Ii~ap~f~a~~~~-~---g~~Se-~~i~in~~~~~~lI~GT~YaGE---~KK~i-Fs~~~~ll~~rg~l~mHas 239 (555)
T PLN02597 172 --DFT-IYNAGQFPCNRYT-H---YMTSS-TSIDLNLKRKEMVILGTQYAGE---MKKGL-FSLMHYLMPMRGILSLHSG 239 (555)
T ss_pred --CEE-EEeCCCCCCCccc-c---CCCCC-cEEEEEccCCeEEEEccchhhh---hHHHH-HHHHHHHHHHCCcEeecCe
Confidence 899 9999998765422 3 67999 7999999999999999999999 99998 9999999999999999999
Q ss_pred hccccCCCCCEEEEEeEcCCccchhhhcccCCCCCCCeeEEeeccE-EEEEECCCccEEEeccCCCeeEeccCCCCCCcH
Q psy13077 274 ILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDI-AWMKFDKEGVLRAINPENGFFGVAPGTSNKTNP 352 (630)
Q Consensus 274 i~gv~~p~G~~~~f~~afpSg~GKTtLam~~p~~pgwk~~lIGDDi-aW~~~~~dG~l~a~NpE~G~fgk~~g~s~~~~P 352 (630)
.+ .+.+|+++.|| |+|||||||||+ +| + +.+||||+ +| +++| +||+|+|||+|+++||+|+||
T Consensus 240 aN--v~~~g~~~lff--GlSGtGKTTLsa-d~---~--~~li~DDEHgW---~~~G---VfNfEGGCYAK~i~Ls~e~EP 303 (555)
T PLN02597 240 CN--MGKDGDVALFF--GLSGTGKTTLST-DP---N--RYLIGDDEHCW---SDNG---VSNIEGGCYAKCIDLSEEKEP 303 (555)
T ss_pred ec--cCCCCcEEEEE--ecCCCCccceec-CC---C--Cceeecccccc---cCCc---eEeecCceEEEecCCCcccch
Confidence 42 35789999999 999999999998 55 6 79999996 99 9999 599999999999999999999
Q ss_pred HHHhhccCCceeEcceEcCCCc-eeccCCccCCCCCccccccCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCcCCC
Q psy13077 353 IAMKTVFKNTIFTNVASTSDGG-VYWEGMEDEISPDVSITDWHNKPWKKSDGTQAAHPNSRFCTPASQCPTIDPNWESHE 431 (630)
Q Consensus 353 ~i~~ai~~~tIf~NV~~~~dg~-v~w~g~~~~~p~~~~~~dw~g~~~t~~~~~~~aHpNsRft~P~~~~pn~~~~~e~p~ 431 (630)
+||+||++|+|+|||+++++++ |+|++ .+.|+ |+|++||+++|||++.+ +.+
T Consensus 304 eI~~Ai~fgavLENVv~d~~~~~~df~D----------------~s~Te---------NtR~aYPi~~I~na~~p--~~~ 356 (555)
T PLN02597 304 DIWNAIKFGTVLENVVFDEHTREVDYSD----------------KSVTE---------NTRASYPIEYIPNAKIP--CVG 356 (555)
T ss_pred HHHHhcCCCceEEeeEECCCCCccCCcC----------------Ccccc---------cceEEeEHHhccccCCC--ccC
Confidence 9999999999999999998755 46655 46684 99999999999999875 899
Q ss_pred CcccceEEEeccCCCC-CCceEeecCccceeeccccccchhhhhhcccCceeccCCcc------CCCCCCCChHHHHHHH
Q psy13077 432 GVPISAIIFGGRRPQG-VPLVYESFDWQHGVFLGASMRSEATAAAEHKGKVIMHDPFA------MRPFFGYNFGDYLKHW 504 (630)
Q Consensus 432 GvPi~aIiFg~rd~~g-lPpV~e~~~wq~gv~lGas~~Se~TAa~~g~~g~~~~dP~a------~~PF~~y~~g~Y~~~w 504 (630)
|+| ++|||||||++| ||||++|++.|++||| .|+|||+++||+.++ .+|.+ ++|||++||++|+++
T Consensus 357 ~hP-~~IifLT~DAfGVlPPvskLt~eQA~yhF----lsGyTakvAGTE~Gv-~ep~~tFS~CFG~PFl~l~P~~Ya~~- 429 (555)
T PLN02597 357 PHP-KNVILLACDAFGVLPPVSKLTLAQTMYHF----ISGYTALVAGTEDGI-KEPTATFSACFGAAFIMLHPTKYAAM- 429 (555)
T ss_pred CCC-CEEEEEeccccCCCCccccCCHHHHHHHH----HhcceeccccccCCC-CCCcccchhccCCCCcCCCHHHHHHH-
Confidence 999 899999999999 8999999999999999 999999999996666 58876 899999999999999
Q ss_pred HHHHHhhccCCCcEEEEeeeeeCCCCCcccCCCcchhHH-HHH---HHHhHhcCcc---ceecCc-ccc-cCCCCCcCCC
Q psy13077 505 LSMEQRTNAKLPKVFHVNWFRKGSQGEFLWPGFGENIRV-LDW---ILRRVENNKE---IAEASP-IGY-IPKPEALITT 575 (630)
Q Consensus 505 l~lg~~~~~~~pkif~VN~F~~g~~G~flWpG~G~n~Rv-L~w---i~~r~~~G~~---~~~~tp-~G~-iP~~~~l~~~ 575 (630)
|++|+.++..+||+|| |||+|+ .||++.|| |++ |++++++|++ .+...| ||| ||++ |+
T Consensus 430 --L~eki~~~~~~vyLvN---TGw~GG----~yg~G~Ri~l~~TRaiv~ail~G~l~~~~~~~~p~Fgl~iP~~----~~ 496 (555)
T PLN02597 430 --LAEKMQKHGATAWLVN---TGWSGG----SYGVGKRMSLAYTRKIIDAIHSGSLLNAEYVKTPIFGLEVPTE----IE 496 (555)
T ss_pred --HHHHHHHcCCCEEEEe---cCccCC----CCCCcceechHHHHHHHHHHhcCCccCCcceECCccCcccccc----CC
Confidence 7799999999999999 999988 79999999 987 9999999996 677778 999 9999 99
Q ss_pred CCCchhhhHhhhcCCHHHHHHHHHHHHHHHHHh---hC-------CCccHHHHH
Q psy13077 576 NLASDVDLEELFSFDKSFWEQEVQDLQRYFNEQ---LG-------ADLPTAIQA 619 (630)
Q Consensus 576 Gl~~~~~~~~~~~~d~~~w~~e~~~l~~~f~~~---~~-------~~lP~ei~~ 619 (630)
|||++++.|+.+|.|+++|++++++|++.|.++ |. ..+++++.+
T Consensus 497 gVp~~iL~Pr~~w~d~~~yd~~a~~La~~F~~Nf~kf~~~~~~~~~~~~~~v~~ 550 (555)
T PLN02597 497 GVPSEILDPENTWSDKKAYDETLNKLAGLFKKNFEVFADYKIGVDGKLTEEILA 550 (555)
T ss_pred CCChhhcChhhcCCCHHHHHHHHHHHHHHHHHHHHHhcccccccccccCHHHHh
Confidence 999999999999999999999999999999884 42 345676654
No 8
>COG1866 PckA Phosphoenolpyruvate carboxykinase (ATP) [Energy production and conversion]
Probab=100.00 E-value=1.1e-106 Score=857.89 Aligned_cols=472 Identities=20% Similarity=0.290 Sum_probs=428.3
Q ss_pred CcEEEeCCCHHHHHHHHHHHHHCCccccccCCCCcEEEeeCCCcccccCCCEEEEcCCCcccCcCCCCCccC-CCCCcCC
Q psy13077 47 SDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDTKPGVKG-TLGNWIS 125 (630)
Q Consensus 47 ~~I~~~~gs~ee~~~L~~~~~~~Ge~~~L~~~~g~~l~~t~p~d~aR~~~~tfIv~~~~~d~gp~~~~gi~~-~~n~~~~ 125 (630)
..|+.|.+.++ |+++++++||+. |+ ..|++.++|+.+ |||||+|+|||.++.. ++.||| ..|++++
T Consensus 19 ~~v~~n~s~~~----L~e~~i~~~eg~-lt-~~Gal~~~TG~~-TGRSPkDkfiV~~~~t------~~~i~W~~~Nkpi~ 85 (529)
T COG1866 19 EDVVYNLSAAQ----LYEEAIRRGEGV-LT-ATGALRVDTGIY-TGRSPKDKFIVRDDST------RDTIWWGTRNKPIS 85 (529)
T ss_pred HHHHhcCCHHH----HHHHHhhcCCCc-cC-CCCceEEecccc-cCCCCCCceEEecCcc------cccccccccCccCC
Confidence 67899999865 999999999976 65 678866655555 9999999999988874 456666 4699999
Q ss_pred HHHHHHHHHhhhhhhcCCCeEEEEeccccCCCCCCCccceE-EccchHHHhhhhhcc-cCChHHhhhcCCCCCceEEEEe
Q psy13077 126 PQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVE-ITDSPYVVGSMRIMT-RIGTPVLNLLDADQPFVKALHS 203 (630)
Q Consensus 126 ~~~~~~~L~~~~~g~m~GrtmyV~~~~~Gp~gsp~~~~gV~-iTdsayv~l~m~im~-R~~~~~l~~~~~~~~Fv~~~hs 203 (630)
+|.|+. |+.++..+++||++||++.++|+ ++.+++.|| ||+++||+|+|++|+ |++.+++..+.+ ||+ ++.+
T Consensus 86 ~e~f~~-L~~~~~~yl~~k~lfv~d~~~Ga--~~~~~l~vrvvte~Awh~lF~~nlfIrP~~e~l~~~~~--dft-vin~ 159 (529)
T COG1866 86 PETFDR-LKGDVTDYLSGKDLFVVDGFAGA--DPDYRLPVRVVTEVAWHALFIRNLFIRPTGEELSTFKP--DFT-VINA 159 (529)
T ss_pred HHHHHH-HHHHHHHHhccCcEEEEEeeecC--CccceeeeEeehhhHHHHHHHHhcccccchhhhccCCC--CeE-EEeC
Confidence 999995 99999999999999999999999 999999999 899999999999999 999999999888 899 9987
Q ss_pred cCCCCCCCCcCCCCCCCCcceEEEEcCCCCeEEEEccccccccccccceeehhhhhhhhhccCcccccchhccccCCCCC
Q psy13077 204 VGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHMLILGITNPEGQ 283 (630)
Q Consensus 204 ~g~p~~~~~~~~~wpcn~e~~~I~~~~~~r~i~s~Gs~YgGnall~KK~~alrias~~a~~eGwLaeHm~i~gv~~p~G~ 283 (630)
+...... ..+ ++||| ++|+++++++.++|.||.|+|| |||++ |++|||++|.+|+|+|||+ +++++.|+
T Consensus 160 p~f~~~~-~~~---g~~Se-~~i~~n~~~~~~lIggT~YaGE---MKK~~-fs~mnylLP~~~i~~MHcs--ANvG~~gd 228 (529)
T COG1866 160 PSFKADP-KRD---GLRSE-TFVAFNFTERIVLIGGTWYAGE---MKKGI-FSVMNYLLPLKGILSMHCS--ANVGEKGD 228 (529)
T ss_pred CcCCCCh-hhc---ccccc-cEEEEecccceeeeeccchhhh---hhhhH-HHHhhccccccccccceec--cccCcCCC
Confidence 7753332 213 67999 7999999999999999999999 99998 9999999999999999999 55679999
Q ss_pred EEEEEeEcCCccchhhhcccCCCCCCCeeEEeeccE-EEEEECCCccEEEeccCCCeeEeccCCCCCCcHHHHhhccCCc
Q psy13077 284 KKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDI-AWMKFDKEGVLRAINPENGFFGVAPGTSNKTNPIAMKTVFKNT 362 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam~~p~~pgwk~~lIGDDi-aW~~~~~dG~l~a~NpE~G~fgk~~g~s~~~~P~i~~ai~~~t 362 (630)
+++|| |||||||||||+ || +|+|||||+ +| +++| +||+|+|||+||+++|++.||+||.||++++
T Consensus 229 valFF--GLSGTGKTTLSa-Dp-----~R~LIGDDEHgW---~d~G---VFN~EGGCYAK~I~Ls~e~EP~I~~Ai~~~a 294 (529)
T COG1866 229 VALFF--GLSGTGKTTLSA-DP-----HRRLIGDDEHGW---DDRG---VFNFEGGCYAKTINLSEEKEPEIYAAIKRGA 294 (529)
T ss_pred eEEEE--eccCCCcceecc-CC-----ccccccCccccc---CCCc---eEeecCccccccccCchhhchhHHHHhhccc
Confidence 99999 999999999999 88 599999997 99 9999 5999999999999999999999999999999
Q ss_pred eeEcceEcCCCceeccCCccCCCCCccccccCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCcCCCCcccceEEEec
Q psy13077 363 IFTNVASTSDGGVYWEGMEDEISPDVSITDWHNKPWKKSDGTQAAHPNSRFCTPASQCPTIDPNWESHEGVPISAIIFGG 442 (630)
Q Consensus 363 If~NV~~~~dg~v~w~g~~~~~p~~~~~~dw~g~~~t~~~~~~~aHpNsRft~P~~~~pn~~~~~e~p~GvPi~aIiFg~ 442 (630)
++|||++++||.|+++|. +.| +|||++||+++|||..|. ..+|+| ++|||||
T Consensus 295 vLENVVvdedg~~Df~D~----------------SlT---------eNTR~aYpi~~Ipn~~~~--~~~ghp-~~iIfLT 346 (529)
T COG1866 295 VLENVVVDEDGTPDFDDG----------------SLT---------ENTRAAYPIEHIPNVSPS--VKAGHP-KNVIFLT 346 (529)
T ss_pred eeeeEEEcCCCCcCCccc----------------ccc---------ccccccchHhhccccCcc--cccCCC-ceEEEEe
Confidence 999999999999888774 557 499999999999998885 788899 7999999
Q ss_pred cCCCC-CCceEeecCccceeeccccccchhhhhhcccCceeccCCcc------CCCCCCCChHHHHHHHHHHHHhhccCC
Q psy13077 443 RRPQG-VPLVYESFDWQHGVFLGASMRSEATAAAEHKGKVIMHDPFA------MRPFFGYNFGDYLKHWLSMEQRTNAKL 515 (630)
Q Consensus 443 rd~~g-lPpV~e~~~wq~gv~lGas~~Se~TAa~~g~~g~~~~dP~a------~~PF~~y~~g~Y~~~wl~lg~~~~~~~ 515 (630)
||+|| ||||++|+++|+|||| .|++||+.+||+.++ .+|.+ ++|||++|+++|+++ |++++.++.
T Consensus 347 aDafGVlPPvsrLTpeQamYhF----lsG~TaK~agTE~Gv-tep~pTFStCFGaPFmp~hp~~YA~~---L~~~i~~~~ 418 (529)
T COG1866 347 ADAFGVLPPVSRLTPEQAMYHF----LSGYTAKLAGTERGV-TEPEPTFSTCFGAPFMPLHPTRYAEL---LGKLIKAHG 418 (529)
T ss_pred ccccCCCCcchhcCHHHHHHHH----HcchhhhccccccCC-CCCCcccccccCCcccCCChhHHHHH---HHHHHHHcC
Confidence 99999 8999999999999999 999999999995554 35443 999999999999999 669999999
Q ss_pred CcEEEEeeeeeCCCCCcccCCCcchhHH-HHH---HHHhHhcCccceec---Cc-ccc-cCCCCCcCCCCCCchhhhHhh
Q psy13077 516 PKVFHVNWFRKGSQGEFLWPGFGENIRV-LDW---ILRRVENNKEIAEA---SP-IGY-IPKPEALITTNLASDVDLEEL 586 (630)
Q Consensus 516 pkif~VN~F~~g~~G~flWpG~G~n~Rv-L~w---i~~r~~~G~~~~~~---tp-~G~-iP~~~~l~~~Gl~~~~~~~~~ 586 (630)
.+||+|| |||+|+ +||.++|| |++ |+.++++|+++..+ .| ||+ ||+. ++||++.+++|+.
T Consensus 419 ~~vyLvN---TGWtGg----~yg~GkRi~ik~TRall~a~l~G~l~nae~~~d~~f~l~iP~~----~pGV~~~ilnP~~ 487 (529)
T COG1866 419 ANVYLVN---TGWTGG----AYGTGKRIPIKYTRALLDAILDGSLENAETKTDPIFGLAIPVA----LPGVDSDILNPRN 487 (529)
T ss_pred CcEEEEe---cCccCC----CCCCccccCHHHHHHHHHHHhccccccceeeeccccccccccc----CCCCCccccChhh
Confidence 9999999 999998 89999999 986 99999999965544 47 999 9999 9999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhh
Q psy13077 587 FSFDKSFWEQEVQDLQRYFNEQL 609 (630)
Q Consensus 587 ~~~d~~~w~~e~~~l~~~f~~~~ 609 (630)
+|.|+.+|++++++|++.|.++|
T Consensus 488 tw~dk~~y~~~a~~La~~F~~NF 510 (529)
T COG1866 488 TWADKAAYDEKARRLAKLFIENF 510 (529)
T ss_pred hhccHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998865
No 9
>cd00484 PEPCK_ATP Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity, this model describes the ATP-dependent groups.
Probab=100.00 E-value=9.5e-105 Score=864.51 Aligned_cols=481 Identities=21% Similarity=0.280 Sum_probs=434.7
Q ss_pred cEEEeCCCHHHHHHHHHHHHHCCccccccCCCCcEEEeeCCCcccccCCCEEEEcCCCcccCcCCCCCccC-CCCCcCCH
Q psy13077 48 DVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDTKPGVKG-TLGNWISP 126 (630)
Q Consensus 48 ~I~~~~gs~ee~~~L~~~~~~~Ge~~~L~~~~g~~l~~t~p~d~aR~~~~tfIv~~~~~d~gp~~~~gi~~-~~n~~~~~ 126 (630)
.||+|+..++ |+++|+++++++ ++ ..|++++.|+.. |||||+|||||.++.+ ++.||| ..|+++++
T Consensus 2 ~v~~Nls~~e----L~E~A~~~~eg~-~t-~~GaL~v~TG~~-TGRSPkDkfIV~~~~t------~~~i~wg~vn~~~~~ 68 (508)
T cd00484 2 HIHHNLSPAE----LYEEALKRGEGV-LT-STGALAVDTGKK-TGRSPKDKFIVDEPSS------EDDIWWGKVNQPISE 68 (508)
T ss_pred ccccCCCHHH----HHHHHHhCCCCE-Ee-cCCCeEeccCCc-cCCCCCceeEeCCCCc------cccccccccCcCCCH
Confidence 5899999977 999999999977 65 589977766666 9999999999987664 345555 55899999
Q ss_pred HHHHHHHHhhhhhhcCCCeEEEEeccccCCCCCCCccceE-EccchHHHhhhhhcc-cCChHHhhhcCCCCCceEEEEec
Q psy13077 127 QDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVE-ITDSPYVVGSMRIMT-RIGTPVLNLLDADQPFVKALHSV 204 (630)
Q Consensus 127 ~~~~~~L~~~~~g~m~GrtmyV~~~~~Gp~gsp~~~~gV~-iTdsayv~l~m~im~-R~~~~~l~~~~~~~~Fv~~~hs~ 204 (630)
++|++ |++++..++++|+|||++.++|+ +|.+++.|| ||+.||++|+|+.|+ |+..++++.+.+ ||+ +++.+
T Consensus 69 ~~f~~-L~~~~~~yl~~~~lyv~D~~vGa--dp~~r~~vRvi~~~a~~alF~~nmfi~P~~eel~~f~p--dft-I~~~P 142 (508)
T cd00484 69 ETFEI-LRERAVDYLNTKKLFVFDGFAGA--DPEYRLKVRVITERAWHALFMRNMFIRPTEEELENFGP--DFT-IYNAP 142 (508)
T ss_pred HHHHH-HHHHHHHHhcCCCEEEEeeeeec--CcccceeeEEEECHHHHHHHHHhCCCCCChHHhccCCc--CEE-EEECC
Confidence 99994 99999999999999999999999 999999999 899999999999998 999999998886 899 99999
Q ss_pred CCCCCCCCcCCCCCCCCcceEEEEcCCCCeEEEEccccccccccccceeehhhhhhhhhccCcccccchhccccCCCCCE
Q psy13077 205 GTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHMLILGITNPEGQK 284 (630)
Q Consensus 205 g~p~~~~~~~~~wpcn~e~~~I~~~~~~r~i~s~Gs~YgGnall~KK~~alrias~~a~~eGwLaeHm~i~gv~~p~G~~ 284 (630)
+.+.++.. + +++|+ ++|++|++++.++|+||.|+|| +||++ |++|+++++++|+|+|||+.. .+.+|++
T Consensus 143 ~f~~~~~~-~---G~~s~-~~iiin~~~~~~lI~GT~YaGE---iKKgi-f~~~~~ll~~~g~l~lH~san--v~~~~~~ 211 (508)
T cd00484 143 KFKANPET-D---GMNSE-TFVIINFAEREMVIGGTEYAGE---MKKGI-FSVMNYLLPKKGVLSMHCSAN--VGKKGDV 211 (508)
T ss_pred CCcCCccc-c---CCCcc-cEEEEEccCCeEEEECccchhh---hHHHH-HHHHHHHHHhCCcEeeccccc--cCCCCCE
Confidence 97655422 3 67898 7999999999999999999999 99998 999999999999999999942 3577999
Q ss_pred EEEEeEcCCccchhhhcccCCCCCCCeeEEeeccE-EEEEECCCccEEEeccCCCeeEeccCCCCCCcHHHHhhccCCce
Q psy13077 285 KYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDI-AWMKFDKEGVLRAINPENGFFGVAPGTSNKTNPIAMKTVFKNTI 363 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam~~p~~pgwk~~lIGDDi-aW~~~~~dG~l~a~NpE~G~fgk~~g~s~~~~P~i~~ai~~~tI 363 (630)
+.|| |+|||||||||+ +| .+.+||||+ +| +++| +||+|+|||+|+++||+|.||+||+||++|+|
T Consensus 212 ~~ff--GlSGtGKtTLsa-~~-----~r~li~DDehgW---~~~G---vfn~EGGcYaK~i~Ls~e~EP~I~~Ai~fgav 277 (508)
T cd00484 212 ALFF--GLSGTGKTTLSA-DP-----NRKLIGDDEHGW---SDRG---VFNIEGGCYAKCINLSEEKEPEIYNAIKFGAV 277 (508)
T ss_pred EEEE--ecCCCCHHHhcc-Cc-----cCCeeccccccc---CCCc---eEeecCceEEEecCCCcccChHHHHhhccCce
Confidence 9999 999999999998 66 479999996 99 9999 59999999999999999999999999999999
Q ss_pred eEcceEcCC-CceeccCCccCCCCCccccccCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCcCCCCcccceEEEec
Q psy13077 364 FTNVASTSD-GGVYWEGMEDEISPDVSITDWHNKPWKKSDGTQAAHPNSRFCTPASQCPTIDPNWESHEGVPISAIIFGG 442 (630)
Q Consensus 364 f~NV~~~~d-g~v~w~g~~~~~p~~~~~~dw~g~~~t~~~~~~~aHpNsRft~P~~~~pn~~~~~e~p~GvPi~aIiFg~ 442 (630)
+|||+++++ |.|+|++ .++|+ |+|++||+++|||++.+ ..+|+| ++|||||
T Consensus 278 lENVv~d~~~~~~df~d----------------~s~Te---------NtR~~yP~~~I~na~~~--~~~~~p-~~iifLT 329 (508)
T cd00484 278 LENVVVDEETREVDYDD----------------DSITE---------NTRAAYPIEHIPNAVIP--GVGGHP-KNIIFLT 329 (508)
T ss_pred EeeeEEcCCCCccCCCC----------------Ccccc---------cceEEeEHHHccccCCC--CcCCCC-CEEEEEe
Confidence 999999964 7766665 56784 99999999999999875 789999 8999999
Q ss_pred cCCCC-CCceEeecCccceeeccccccchhhhhhcccCceeccCCcc------CCCCCCCChHHHHHHHHHHHHhhccCC
Q psy13077 443 RRPQG-VPLVYESFDWQHGVFLGASMRSEATAAAEHKGKVIMHDPFA------MRPFFGYNFGDYLKHWLSMEQRTNAKL 515 (630)
Q Consensus 443 rd~~g-lPpV~e~~~wq~gv~lGas~~Se~TAa~~g~~g~~~~dP~a------~~PF~~y~~g~Y~~~wl~lg~~~~~~~ 515 (630)
||++| ||||++|++.|+|||| .|+|||+++||+.++ .+|.| +.|||++||++|+++ |++|++++.
T Consensus 330 ~DafgVlPPvskLt~eQA~y~F----lsGyTak~agTE~Gv-~ep~~tFS~cfg~PF~~~~p~~ya~~---L~eki~~~~ 401 (508)
T cd00484 330 ADAFGVLPPVSKLTPEQAMYHF----LSGYTAKVAGTERGI-TEPTATFSACFGAPFLPLHPTVYAEM---LGEKIKKHG 401 (508)
T ss_pred ccccCCCCccccCCHHHHHHHH----HccccccccccccCC-cCCcccchhhcCCcCCCCCHHHHHHH---HHHHHHHcC
Confidence 99999 8999999999999999 999999999996555 58877 999999999999999 779999999
Q ss_pred CcEEEEeeeeeCCCCCcccCCCcchhHH-HHH---HHHhHhcCcc---ceecCc-ccc-cCCCCCcCCCCCCchhhhHhh
Q psy13077 516 PKVFHVNWFRKGSQGEFLWPGFGENIRV-LDW---ILRRVENNKE---IAEASP-IGY-IPKPEALITTNLASDVDLEEL 586 (630)
Q Consensus 516 pkif~VN~F~~g~~G~flWpG~G~n~Rv-L~w---i~~r~~~G~~---~~~~tp-~G~-iP~~~~l~~~Gl~~~~~~~~~ 586 (630)
.+||+|| |||+|+ +||+++|| |++ |++++++|++ .+..+| ||+ ||++ |+|||++++.|+.
T Consensus 402 ~~v~LvN---TGw~GG----~yg~G~Ri~l~~Traiv~a~~~G~l~~~~~~~~~~fgl~iP~~----~~gvp~~~L~P~~ 470 (508)
T cd00484 402 AKVWLVN---TGWTGG----SYGVGKRIPLKYTRAIIDAILSGELNNAEYEKDPVFNLAIPTS----IPGVPSEILNPRN 470 (508)
T ss_pred CCEEEEe---cCccCC----CCCCCccccHHHHHHHHHHHHcCCccCCCceECCccCcccccc----CCCCChhhcCHhh
Confidence 9999999 999988 79999999 997 9999999997 567778 999 9998 9999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHH---hhCCCccHHHHH
Q psy13077 587 FSFDKSFWEQEVQDLQRYFNE---QLGADLPTAIQA 619 (630)
Q Consensus 587 ~~~d~~~w~~e~~~l~~~f~~---~~~~~lP~ei~~ 619 (630)
+|.|+++|++++++|++.|.+ ||.++++++|++
T Consensus 471 ~w~d~~~y~~~a~~La~~F~~nf~~f~~~~~~~i~~ 506 (508)
T cd00484 471 TWADKEAYDETAKKLAKLFIENFKKFADKVSEEIAA 506 (508)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHh
Confidence 999999999999999999988 555567788765
No 10
>PTZ00311 phosphoenolpyruvate carboxykinase; Provisional
Probab=100.00 E-value=3.8e-104 Score=864.10 Aligned_cols=488 Identities=20% Similarity=0.250 Sum_probs=435.0
Q ss_pred HhhhcCCCcEEEeCCCHHHHHHHHHHHH-HCCccccccCCCCcEEEeeCCCcccccCCCEEEEcCCCcccCcCCCCCccC
Q psy13077 40 CVELCQPSDVHICDGSEREYKELIDLMV-KDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDTKPGVKG 118 (630)
Q Consensus 40 ~~~l~~p~~I~~~~gs~ee~~~L~~~~~-~~Ge~~~L~~~~g~~l~~t~p~d~aR~~~~tfIv~~~~~d~gp~~~~gi~~ 118 (630)
..+| ++..||+|...++ |+++|+ +++++. ++ ..|++++.|+.+ |||||+|||||.++.. ++.|||
T Consensus 36 ~~g~-~~~~i~~Nl~~~~----L~E~al~~~~~g~-~t-~~GaL~v~TG~~-TGRSpkDKfIV~~~~~------~d~i~W 101 (561)
T PTZ00311 36 KLGL-HNTTIHRNLTVPE----LYEHALKYEKNTS-IT-STGALCVYSGAK-TGRSPKDKRIVKEDSS------EDDIWW 101 (561)
T ss_pred hcCC-CCCeEEeCCCHHH----HHHHHHhhcCCcE-Ee-cCCceEEecCCc-cCCCCCceEEeCCCCc------cccccc
Confidence 3445 4468999999977 999999 788866 76 689977766666 9999999999987664 345555
Q ss_pred -CCCCcCCHHHHHHHHHhhhhhhc-CCCeEEEEeccccCCCCCCCccceE-EccchHHHhhhhhcc-cCChHHh----hh
Q psy13077 119 -TLGNWISPQDYEEAIMQRFPGCM-KGRTMYVIPFSMGPVGSPLSKIGVE-ITDSPYVVGSMRIMT-RIGTPVL----NL 190 (630)
Q Consensus 119 -~~n~~~~~~~~~~~L~~~~~g~m-~GrtmyV~~~~~Gp~gsp~~~~gV~-iTdsayv~l~m~im~-R~~~~~l----~~ 190 (630)
+.|+++++++|+. |++++..++ ++|++||++.++|+ +|.+++.|| ||+.||++|+|+.|+ |+..+++ +.
T Consensus 102 g~vN~p~~~~~f~~-L~~~~~~yl~~~~~lyv~D~~vGa--Dp~~~l~vRvit~~a~~alF~~nmfirP~~~el~~~~~~ 178 (561)
T PTZ00311 102 GKVNIPLSEESFEI-NKKRAIDYLNTRERLFVVDGYAGW--DPKYRLKVRVITTRAYHALFMRNMLIRPTNEELKKFGED 178 (561)
T ss_pred CccCccCCHHHHHH-HHHHHHHHHhcCCCEEEEeeeeec--CcccceeEEEEecHHHHHHHHHHCCCCCChHHhhccccC
Confidence 5589999999995 999999999 57899999999999 999999999 899999999999999 8998888 55
Q ss_pred cCCCCCceEEEEecCCCCCCCCcCCCCCCCCcceEEEEcCCCCeEEEEccccccccccccceeehhhhhhhhhccCcccc
Q psy13077 191 LDADQPFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAE 270 (630)
Q Consensus 191 ~~~~~~Fv~~~hs~g~p~~~~~~~~~wpcn~e~~~I~~~~~~r~i~s~Gs~YgGnall~KK~~alrias~~a~~eGwLae 270 (630)
+.+ ||+ +++.++.+.++.. + +++|+ ++|++|+++++++|+||.|+|| +||++ |++|+++++++|+|+|
T Consensus 179 f~P--dft-Ii~~P~f~a~~~~-~---G~~se-~~i~in~~~~~~lI~GT~YaGE---iKKgi-Ft~~~~ll~~rg~l~l 246 (561)
T PTZ00311 179 FVP--DFT-IYNAGEFKANRLI-E---GVTSE-TSVALNFKRREMVILGTQYAGE---MKKGI-LTVMMYLMPKQGVLPL 246 (561)
T ss_pred CCC--CEE-EEECCCCCCCccc-C---CCCcc-cEEEEEccCCeEEEEcccchhh---hHHHH-HHHHHHHHHHCCceee
Confidence 556 898 9999997655422 3 67898 7999999999999999999999 99998 9999999999999999
Q ss_pred cchhccccCCCCCEEEEEeEcCCccchhhhcccCCCCCCCeeEEeeccE-EEEEECCCccEEEeccCCCeeEeccCCCCC
Q psy13077 271 HMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDI-AWMKFDKEGVLRAINPENGFFGVAPGTSNK 349 (630)
Q Consensus 271 Hm~i~gv~~p~G~~~~f~~afpSg~GKTtLam~~p~~pgwk~~lIGDDi-aW~~~~~dG~l~a~NpE~G~fgk~~g~s~~ 349 (630)
||+.+ .+.+|+++.|| |+|||||||||+ +| + +.+||||+ +| +++| +||+|+|||+|+++||+|
T Consensus 247 Hasa~--v~~~g~~~~ff--GlSGtGKtTLsa-~~---~--~~li~DD~~gW---~~~G---vfn~EGGCYAK~i~Ls~e 310 (561)
T PTZ00311 247 HSSAN--VGKKGDVTLFF--GLSGTGKTTLSA-DP---N--RKLIGDDEHVW---TDDG---VFNIEGGCYAKCIDLSKE 310 (561)
T ss_pred eeeEe--eCCCCCEEEEE--ccCCCCHHHhcc-CC---C--Cceeecccccc---cCCc---eEeecCceEEEecCCCcc
Confidence 99944 34679999999 999999999999 66 5 79999997 99 9999 599999999999999999
Q ss_pred CcHHHHhhccCCceeEcceEcCC-CceeccCCccCCCCCccccccCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCc
Q psy13077 350 TNPIAMKTVFKNTIFTNVASTSD-GGVYWEGMEDEISPDVSITDWHNKPWKKSDGTQAAHPNSRFCTPASQCPTIDPNWE 428 (630)
Q Consensus 350 ~~P~i~~ai~~~tIf~NV~~~~d-g~v~w~g~~~~~p~~~~~~dw~g~~~t~~~~~~~aHpNsRft~P~~~~pn~~~~~e 428 (630)
.||+||+||++|||+|||+++++ +.|+|++ .+.|+ |+|++||+++|||++.+
T Consensus 311 ~EPeI~~Ai~fgavLENVv~d~~~~~~df~d----------------~s~Te---------NtR~ayP~~~I~na~~~-- 363 (561)
T PTZ00311 311 TEPEIYNAIRFGAVLENVVLDKVTREVDFND----------------ISITE---------NTRCAYPLEHIPNAKIP-- 363 (561)
T ss_pred cChHHHHhhccCceEEeeEEcCCCCcccCCC----------------Ccccc---------cceEEeEHHhccccCCC--
Confidence 99999999999999999999985 6766665 46684 99999999999999864
Q ss_pred CCCCcccceEEEeccCCCC-CCceEeecCccceeeccccccchhhhhhcccCceeccCCcc------CCCCCCCChHHHH
Q psy13077 429 SHEGVPISAIIFGGRRPQG-VPLVYESFDWQHGVFLGASMRSEATAAAEHKGKVIMHDPFA------MRPFFGYNFGDYL 501 (630)
Q Consensus 429 ~p~GvPi~aIiFg~rd~~g-lPpV~e~~~wq~gv~lGas~~Se~TAa~~g~~g~~~~dP~a------~~PF~~y~~g~Y~ 501 (630)
+.+|+| ++|||||||++| ||||++|+++|+|||| .|+|||+++||+.++ .+|.| ++|||++||++|+
T Consensus 364 ~~~~~P-~~IifLT~DafGVlPPvskLt~eQA~yhF----lsGyTakvaGTE~Gv-tep~~tFS~CFg~PFl~l~p~~Ya 437 (561)
T PTZ00311 364 AVGGHP-KNIIFLTCDAFGVLPPVSKLTPEQAMYHF----ISGYTAKVAGTEVGV-KEPTATFSACFGEPFLVLHPTVYA 437 (561)
T ss_pred CcCCCC-CEEEEEeccccCCCCccccCCHHHHHHHH----HccccccccccccCC-ccCccccccccCCcCCCCCHHHHH
Confidence 899999 899999999999 8999999999999999 999999999995554 57766 7999999999999
Q ss_pred HHHHHHHHhhccCCCcEEEEeeeeeCCCCCcccCCCcc-hhHH-HHH---HHHhHhcCcc---ceecCc-ccc-cCCCCC
Q psy13077 502 KHWLSMEQRTNAKLPKVFHVNWFRKGSQGEFLWPGFGE-NIRV-LDW---ILRRVENNKE---IAEASP-IGY-IPKPEA 571 (630)
Q Consensus 502 ~~wl~lg~~~~~~~pkif~VN~F~~g~~G~flWpG~G~-n~Rv-L~w---i~~r~~~G~~---~~~~tp-~G~-iP~~~~ 571 (630)
++ |++|++++..+||+|| |||+|+ .||+ ++|| |++ |++++++|++ .+..+| ||+ ||++
T Consensus 438 ~l---L~eki~~~~~~v~LvN---TGw~GG----~yg~~G~Ri~l~~TRaiv~ail~G~l~~~~~~~~p~Fgl~iP~~-- 505 (561)
T PTZ00311 438 EM---LAEKIKKHNTRVWLLN---TGWIGG----SYGSGGKRMPLKYTRAIIDAIHDGELKKAEYEKFPIFGLQIPKS-- 505 (561)
T ss_pred HH---HHHHHHHcCCCEEEee---cCccCC----cCCCCCcccCHHHHHHHHHHHhcCCccCCceeECCccCcccccc--
Confidence 99 7799999999999999 999988 7999 8999 997 9999999997 777778 999 9998
Q ss_pred cCCCCCCchhhhHhhhcCCHHHHHHHHHHHHHHHHH---hhCCCccHHHHH
Q psy13077 572 LITTNLASDVDLEELFSFDKSFWEQEVQDLQRYFNE---QLGADLPTAIQA 619 (630)
Q Consensus 572 l~~~Gl~~~~~~~~~~~~d~~~w~~e~~~l~~~f~~---~~~~~lP~ei~~ 619 (630)
|+|||++++.|+.+|.|+++|++++++|++.|.+ ||.+.+++++++
T Consensus 506 --~pgVp~eiL~Pr~~w~d~~ayd~~a~~La~~F~~nf~~f~~~~~~~i~~ 554 (561)
T PTZ00311 506 --CAGVPSELLDPRNAWKDKAAFDKQLKELAAKFQKNFKKYADKASPEVLA 554 (561)
T ss_pred --CCCCChhhcCHhhcCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHh
Confidence 9999999999999999999999999999999988 566666777765
No 11
>TIGR00224 pckA phosphoenolpyruvate carboxykinase (ATP). Involved in the gluconeogenesis pathway. It converts oxaloacetic acid to phosphoenolpyruvate using ATP. Enzyme is a monomer. The reaction is also catalysed by phosphoenolpyruvate carboxykinase (GTP) (EC 4.1.1.32) using GTP instead of ATP, described in PROSITE:PDOC00421
Probab=100.00 E-value=2e-103 Score=853.06 Aligned_cols=487 Identities=18% Similarity=0.245 Sum_probs=430.8
Q ss_pred HhhhcCCCcEEEeCCCHHHHHHHHHHHHHC-----CccccccCCCCcEEEeeCCCcccccCCCEEEEcCCCcccCcCCCC
Q psy13077 40 CVELCQPSDVHICDGSEREYKELIDLMVKD-----KTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDTKP 114 (630)
Q Consensus 40 ~~~l~~p~~I~~~~gs~ee~~~L~~~~~~~-----Ge~~~L~~~~g~~l~~t~p~d~aR~~~~tfIv~~~~~d~gp~~~~ 114 (630)
..++.+...||+|+..++ |+++|+++ +|+. ++ ..|++++.|+.. |||||+|||||.++.. ++
T Consensus 12 ~~g~~~~~~v~~Nl~~~~----L~e~a~~~~~~~~~eg~-~t-~~Gal~v~TG~~-TGRSpkDK~IV~~~~t------~~ 78 (532)
T TIGR00224 12 ALGISDVHDIVYNPSYAQ----LYEEELKPSLTGYEKGV-LT-STGAVAVDTGIF-TGRSPKDKYIVEDETT------KD 78 (532)
T ss_pred hcCCCCCceEEeCCCHHH----HHHHHHhhccccCCCce-ec-cCCceEEecCCe-eCCCcCceEEeCCCCc------cc
Confidence 334555578999999977 99999999 7766 66 589977766666 9999999999977764 34
Q ss_pred CccC-CCCCcCCHHHHHHHHHhhhhhhcCCCeEEEEeccccCCCCCCCccceE-EccchHHHhhhhhcc-cCChHHhhhc
Q psy13077 115 GVKG-TLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVE-ITDSPYVVGSMRIMT-RIGTPVLNLL 191 (630)
Q Consensus 115 gi~~-~~n~~~~~~~~~~~L~~~~~g~m~GrtmyV~~~~~Gp~gsp~~~~gV~-iTdsayv~l~m~im~-R~~~~~l~~~ 191 (630)
.||| ..|++++++.|+ .|++++..++++|+|||++.++|+ +|.+++.|| ||+.|||+|+|+.|+ |+..++++.+
T Consensus 79 ~i~Wg~vN~p~~~~~f~-~L~~~v~~~l~~~~lyv~D~~~Ga--Dp~~rl~vRvite~AwhalF~~nmfirP~~eel~~f 155 (532)
T TIGR00224 79 TIWWGPVNKPLSEETWQ-HLKGLVTRQLSRKRLFVVDAFCGA--DPKYRLSVRVVTEVAWQAHFVKNMFIRPTEEELAGF 155 (532)
T ss_pred ccccCcCCcCCCHHHHH-HHHHHHHHHhcCCCEEEEeeeecc--CcccceeEEEEEcHHHHHHHHHhhCCCCChHHhccC
Confidence 4554 558999999999 599999999999999999999999 999999999 899999999999999 9999999998
Q ss_pred CCCCCceEEEEecCCCCCCCCcCCCCCCCCcceEEEEcCCCCeEEEEccccccccccccceeehhhhhhhhhccCccccc
Q psy13077 192 DADQPFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEH 271 (630)
Q Consensus 192 ~~~~~Fv~~~hs~g~p~~~~~~~~~wpcn~e~~~I~~~~~~r~i~s~Gs~YgGnall~KK~~alrias~~a~~eGwLaeH 271 (630)
.+ ||+ ++|+++.+.++...+ +++|+ ++|++|+++|+++|+||.|+|| +||++ |++|+++++++|+|+||
T Consensus 156 eP--dft-I~~~p~f~~ad~~~~---g~~S~-~~i~in~~~~~~lI~GT~YaGE---iKKgi-Fs~~~~ll~~rg~l~lH 224 (532)
T TIGR00224 156 EP--DFT-VMNGAKFTNPNWKEQ---GLNSE-NFVAFNLTERMQLIGGTWYGGE---MKKGM-FSMMNYLLPLKGILSMH 224 (532)
T ss_pred CC--CEE-EEeCCCCCCCCcccC---CCCcC-cEEEEecccCeEEEECcchhhh---hHHHH-HHHHHHHHHhCCeEeec
Confidence 77 899 999999642322223 67898 7999999999999999999999 99998 99999999999999999
Q ss_pred chhccccCCCCCEEEEEeEcCCccchhhhcccCCCCCCCeeEEeeccE-EEEEECCCccEEEeccCCCeeEeccCCCCCC
Q psy13077 272 MLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDI-AWMKFDKEGVLRAINPENGFFGVAPGTSNKT 350 (630)
Q Consensus 272 m~i~gv~~p~G~~~~f~~afpSg~GKTtLam~~p~~pgwk~~lIGDDi-aW~~~~~dG~l~a~NpE~G~fgk~~g~s~~~ 350 (630)
|+.+ .+.+|+++.|| |+|||||||||+ +| .+.+||||+ +| +++| +||+|+|||+|+++||+|.
T Consensus 225 ~san--v~~~g~~~~ff--GlSGtGKTTLsa-d~-----~r~li~DDEhgW---~~~G---vfn~EGGCYaK~i~Ls~e~ 288 (532)
T TIGR00224 225 CSAN--VGEKGDVALFF--GLSGTGKTTLST-DP-----KRRLIGDDEHGW---DDDG---VFNFEGGCYAKTIHLSEEK 288 (532)
T ss_pred Ceee--eCCCCCEEEEE--ecCCCChhhhhc-cc-----cccccccccccc---cCCc---eEeecCceEEEecCCCccc
Confidence 9952 34779999999 999999999999 66 479999996 99 9999 5999999999999999999
Q ss_pred cHHHHhhccCCceeEcceEcCCCceeccCCccCCCCCccccccCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCcCC
Q psy13077 351 NPIAMKTVFKNTIFTNVASTSDGGVYWEGMEDEISPDVSITDWHNKPWKKSDGTQAAHPNSRFCTPASQCPTIDPNWESH 430 (630)
Q Consensus 351 ~P~i~~ai~~~tIf~NV~~~~dg~v~w~g~~~~~p~~~~~~dw~g~~~t~~~~~~~aHpNsRft~P~~~~pn~~~~~e~p 430 (630)
||+||+||++|+|+|||+++++|.|+|++ .+.|+ |+|++||+++|||++.+ .+.
T Consensus 289 EPeI~~Ai~fgavLENVv~d~~~~vdf~d----------------~s~Te---------NtR~ayPi~~I~n~~~~-~~~ 342 (532)
T TIGR00224 289 EPEIYNAIRRDALLENVVVREDGTVDFDD----------------GSKTE---------NTRVSYPIYHIDNIVKP-VSA 342 (532)
T ss_pred chHHHHhcCCCceEEeeeECCCCCccCCC----------------Ccccc---------cceEEeEHHhccccCCC-Ccc
Confidence 99999999999999999999888877765 46674 99999999999999654 347
Q ss_pred CCcccceEEEeccCCCC-CCceEeecCccceeeccccccchhhhhhcccCceeccCCcc------CCCCCCCChHHHHHH
Q psy13077 431 EGVPISAIIFGGRRPQG-VPLVYESFDWQHGVFLGASMRSEATAAAEHKGKVIMHDPFA------MRPFFGYNFGDYLKH 503 (630)
Q Consensus 431 ~GvPi~aIiFg~rd~~g-lPpV~e~~~wq~gv~lGas~~Se~TAa~~g~~g~~~~dP~a------~~PF~~y~~g~Y~~~ 503 (630)
+|+| ++|||||||++| ||||++|++.|+|||| .|+|||+++||+.++ .+|.+ ++|||++||++|+++
T Consensus 343 ~~~p-~~iifLT~DAfGVlPPvskLt~eQA~yhF----lsGyTakvAGTE~Gv-~ep~~tFS~Cfg~PFl~~~p~~Ya~l 416 (532)
T TIGR00224 343 AGHA-TKVIFLTADAFGVLPPVSKLTPEQTMYHF----LSGFTAKLAGTERGI-TEPTPTFSACFGAAFLSLHPTQYAEV 416 (532)
T ss_pred CCCC-CEEEEEeccccCCCCccccCCHHHHHHHH----HhcceeccccccCCC-CCCcccchhhcCCCCCCCCHHHHHHH
Confidence 7899 899999999999 8999999999999999 999999999997666 68877 799999999999999
Q ss_pred HHHHHHhhccCCCcEEEEeeeeeCCCCCcccCCCcchhHH-HHH---HHHhHhcCccc---eecCc-ccc-cCCCCCcCC
Q psy13077 504 WLSMEQRTNAKLPKVFHVNWFRKGSQGEFLWPGFGENIRV-LDW---ILRRVENNKEI---AEASP-IGY-IPKPEALIT 574 (630)
Q Consensus 504 wl~lg~~~~~~~pkif~VN~F~~g~~G~flWpG~G~n~Rv-L~w---i~~r~~~G~~~---~~~tp-~G~-iP~~~~l~~ 574 (630)
|++|+++|..+||+|| |||+ |+++|| |++ |+++|++|+++ +..+| ||+ ||++ |
T Consensus 417 ---L~~ki~~~~~~v~LvN---TGw~--------G~G~Ri~l~~TRaiv~ail~G~l~~~~~~~~~~fgl~iP~~----~ 478 (532)
T TIGR00224 417 ---LVKRMQAAGAQAYLVN---TGWN--------GTGKRISIKDTRAIIDAILDGSLENAEMFTLPIFNLAIPTE----L 478 (532)
T ss_pred ---HHHHHHHcCCCEEEEe---cCcc--------cCCcEecHHHHHHHHHHHhcCCccCCCceECCccCcccccc----C
Confidence 7799999999999999 9955 477999 997 99999999966 55678 999 9999 9
Q ss_pred CCCCchhhhHhhhcCCHHHHHHHHHHHHHHHHHhh---CCC-ccHHHHH
Q psy13077 575 TNLASDVDLEELFSFDKSFWEQEVQDLQRYFNEQL---GAD-LPTAIQA 619 (630)
Q Consensus 575 ~Gl~~~~~~~~~~~~d~~~w~~e~~~l~~~f~~~~---~~~-lP~ei~~ 619 (630)
+|||++++.|+.+|.|+++|++++++|++.|.++| .+. +++++++
T Consensus 479 pgvp~~iL~Pr~~W~d~~~y~~~a~~La~~F~~Nf~~f~~~~~~~~v~~ 527 (532)
T TIGR00224 479 PGVDTKILDPRNTYASKEQWQEKAETLANLFVDNFKKYADTPAGAALVA 527 (532)
T ss_pred CCCChhhcCHhhccCCHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHh
Confidence 99999999999999999999999999999998854 333 6777664
No 12
>PRK09344 phosphoenolpyruvate carboxykinase; Provisional
Probab=100.00 E-value=1.1e-93 Score=783.49 Aligned_cols=489 Identities=21% Similarity=0.293 Sum_probs=432.1
Q ss_pred HhhhcCCCcEEEeCCCHHHHHHHHHHHHHCCccccccCCCCcEEEeeCCCcccccCCCEEEEcCCCcccCcCCCCCccC-
Q psy13077 40 CVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDTKPGVKG- 118 (630)
Q Consensus 40 ~~~l~~p~~I~~~~gs~ee~~~L~~~~~~~Ge~~~L~~~~g~~l~~t~p~d~aR~~~~tfIv~~~~~d~gp~~~~gi~~- 118 (630)
..+|.+...||+|...++ |+++|++++++. ++ ..|++++.|+.. |||||+|||||.++.. ++.|||
T Consensus 10 ~~g~~~~~~i~~n~~~~~----L~e~a~~~~~g~-~t-~~Gal~~~tG~~-tGRSp~dk~iV~~~~~------~~~i~wg 76 (526)
T PRK09344 10 AYGITNLSNVHYNLSYAE----LYEEALRRGEGV-LT-DTGALAVDTGKF-TGRSPKDKFIVRDPST------EDTIWWG 76 (526)
T ss_pred hcCCCCcceeEeCCCHHH----HHHHHHHcCCCe-ec-cCCceEEecCCc-cCCCcCceeeecCccc------ccccccc
Confidence 445666688999999977 999999999976 65 689977777666 9999999999987664 233444
Q ss_pred CCCCcCCHHHHHHHHHhhhhhhcCCCeEEEEeccccCCCCCCCccceE-EccchHHHhhhhhcc-cCChHHhhhcCCCCC
Q psy13077 119 TLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVE-ITDSPYVVGSMRIMT-RIGTPVLNLLDADQP 196 (630)
Q Consensus 119 ~~n~~~~~~~~~~~L~~~~~g~m~GrtmyV~~~~~Gp~gsp~~~~gV~-iTdsayv~l~m~im~-R~~~~~l~~~~~~~~ 196 (630)
..|+++++++|+. |++++..++++|++||+|.++|. +|.+++.|| +|+.+||+|+|++|+ |+..++++.+.+ |
T Consensus 77 ~~n~~~~~~~f~~-l~~~~~~~l~~~~lyv~d~~vG~--d~~~~~~vrvi~~~a~~~lf~~nlf~~p~~~e~~~~~P--d 151 (526)
T PRK09344 77 DDNKPISPEKFDA-LKQKVLAYLSGKDLFVVDGFAGA--DPEYRLPVRVITELAWHALFVRNLFIRPSEEELASFEP--D 151 (526)
T ss_pred ccCCCCCHHHHHH-HHHHHHHHhcCCcEEEEeeeecC--ChhHeeeEEEEecHHHHHHHHhhcCCCCChhHhccCCC--C
Confidence 4489999999994 99999999999999999999999 999999999 899999999999999 999999987777 8
Q ss_pred ceEEEEecCCCCCCCCcCCCCCCCCcceEEEEcCCCCeEEEEccccccccccccceeehhhhhhhhhccCcccccchhcc
Q psy13077 197 FVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHMLILG 276 (630)
Q Consensus 197 Fv~~~hs~g~p~~~~~~~~~wpcn~e~~~I~~~~~~r~i~s~Gs~YgGnall~KK~~alrias~~a~~eGwLaeHm~i~g 276 (630)
|+ +++.+..+.++.. + +++|+ ++|+++++++.++++||.|+|| +||++ |++++++++++|+|+|||+.
T Consensus 152 ~~-ii~~p~~~~~~~~-~---g~~s~-~~i~~~~~~~~~~I~Gt~Y~GE---~KK~~-lt~~~~~l~~rg~l~lH~sa-- 219 (526)
T PRK09344 152 FT-IINAPKFKADPER-D---GTNSE-TFIAINFTERIVLIGGTDYAGE---MKKSI-FSVMNYLLPLKGVLPMHCSA-- 219 (526)
T ss_pred EE-EEEcCCCCCCccc-c---CCCCC-ceEEEecccCeEEEEcchhHHH---HHHHH-HHHHHHHHHHCCcEeeeCee--
Confidence 99 9999986544321 2 56888 7999999999999999999999 99997 99999999999999999984
Q ss_pred ccCCCCCEEEEEeEcCCccchhhhcccCCCCCCCeeEEeeccE-EEEEECCCccEEEeccCCCeeEeccCCCCCCcHHHH
Q psy13077 277 ITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDI-AWMKFDKEGVLRAINPENGFFGVAPGTSNKTNPIAM 355 (630)
Q Consensus 277 v~~p~G~~~~f~~afpSg~GKTtLam~~p~~pgwk~~lIGDDi-aW~~~~~dG~l~a~NpE~G~fgk~~g~s~~~~P~i~ 355 (630)
..+.+|+++.|| |+|||||||||+ ++ + +.+||||+ +| +++| +||+|+|||+|+++|++++||+|+
T Consensus 220 ~i~~~g~~~~ff--GlSGtGKSTls~-~~---~--~~li~DD~~~~---~d~g---vfn~EgGcyaK~~dL~~~~EP~I~ 285 (526)
T PRK09344 220 NVGEEGDVALFF--GLSGTGKTTLSA-DP---N--RKLIGDDEHGW---DDGG---VFNFEGGCYAKTINLSEEAEPEIY 285 (526)
T ss_pred ecCCCCcEEEEE--eecCCCeeeccc-cC---C--cceeccceEEE---cCCc---eEeccceEEEEecCCCccccchHh
Confidence 234668999999 999999999998 44 5 89999996 89 8888 699999999999999999999999
Q ss_pred hhccCCceeEcceEcCCCceeccCCccCCCCCccccccCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCcCCCCccc
Q psy13077 356 KTVFKNTIFTNVASTSDGGVYWEGMEDEISPDVSITDWHNKPWKKSDGTQAAHPNSRFCTPASQCPTIDPNWESHEGVPI 435 (630)
Q Consensus 356 ~ai~~~tIf~NV~~~~dg~v~w~g~~~~~p~~~~~~dw~g~~~t~~~~~~~aHpNsRft~P~~~~pn~~~~~e~p~GvPi 435 (630)
+|+++++|+|||+++++|.|++.+ .++|+ |+|++||++++||++.. ...|+|
T Consensus 286 ~a~~~gavlENV~~d~~~~vdf~d----------------~s~T~---------NtR~~yP~~~i~n~~~~--~~~~~p- 337 (526)
T PRK09344 286 DAIRFGAVLENVVVDEDGTVDFDD----------------GSLTE---------NTRAAYPIEHIPNAVKP--SRAGHP- 337 (526)
T ss_pred hhhccCceeeeEEECCCCcccCCC----------------Ccccc---------cceEEEEhHHhcCcccc--ccCCCC-
Confidence 999999999999999999977765 45674 99999999999999875 677898
Q ss_pred ceEEEeccCCCC-CCceEeecCccceeeccccccchhhhhhcccCceeccCCcc------CCCCCCCChHHHHHHHHHHH
Q psy13077 436 SAIIFGGRRPQG-VPLVYESFDWQHGVFLGASMRSEATAAAEHKGKVIMHDPFA------MRPFFGYNFGDYLKHWLSME 508 (630)
Q Consensus 436 ~aIiFg~rd~~g-lPpV~e~~~wq~gv~lGas~~Se~TAa~~g~~g~~~~dP~a------~~PF~~y~~g~Y~~~wl~lg 508 (630)
++|||++||++| ||||+++++.||+||| .|++||+++|++.++ .+|.+ +.||+++|+.+|+++ |+
T Consensus 338 ~~iifLt~Da~gvlPPvskLt~eQA~y~F----lsGyTak~agtE~G~-tep~~tfs~cFg~PF~p~~p~~ya~~---L~ 409 (526)
T PRK09344 338 KNIIFLTADAFGVLPPVSKLTPEQAMYHF----LSGYTAKVAGTERGV-TEPQPTFSTCFGAPFLPLHPTVYAEL---LG 409 (526)
T ss_pred CEEEEEEcCCcCCCCcceeCCHHHHHHHH----HcCceecccccccCc-ccCCceeecccCCCCcCCCHHHHHHH---HH
Confidence 799999999999 8999999999999999 888999999996544 46544 789999999999999 66
Q ss_pred HhhccCCCcEEEEeeeeeCCCCCcccCCCcchhHH-HHH---HHHhHhcCccc---eecCc-ccc-cCCCCCcCCCCCCc
Q psy13077 509 QRTNAKLPKVFHVNWFRKGSQGEFLWPGFGENIRV-LDW---ILRRVENNKEI---AEASP-IGY-IPKPEALITTNLAS 579 (630)
Q Consensus 509 ~~~~~~~pkif~VN~F~~g~~G~flWpG~G~n~Rv-L~w---i~~r~~~G~~~---~~~tp-~G~-iP~~~~l~~~Gl~~ 579 (630)
+++.++..+||+|| |||.|+ .||.++|| |++ |+++|++|++. +...| ||+ ||++ |+|||+
T Consensus 410 ~kl~~~~~~vylvN---TGw~GG----~~g~g~ri~~~~Traii~ai~~G~l~~~~~~~~p~fg~~vP~~----~~gv~~ 478 (526)
T PRK09344 410 ERIKAHGAKVYLVN---TGWTGG----PYGTGKRISIKYTRAIINAILDGSLDNAETTTDPIFGLAVPTS----VPGVDS 478 (526)
T ss_pred HHHHHcCCCEEEEe---cccccC----CCCCCccCCHHHHHHHHHHHhcCCccCCCceeCCccCccCCCc----CCCCCh
Confidence 89988999999999 998887 68999999 987 99999999976 55568 999 9998 999999
Q ss_pred hhhhHhhhcCCHHHHHHHHHHHHHHHHH---hhCCCccHHHHH
Q psy13077 580 DVDLEELFSFDKSFWEQEVQDLQRYFNE---QLGADLPTAIQA 619 (630)
Q Consensus 580 ~~~~~~~~~~d~~~w~~e~~~l~~~f~~---~~~~~lP~ei~~ 619 (630)
+++.|+.+|.|+++|++++++|++.|.+ ||.+.++++|.+
T Consensus 479 ~~l~P~~~w~d~~~y~~~a~~La~~f~~nf~~f~~~~~~~i~~ 521 (526)
T PRK09344 479 EILDPRNTWADKAAYDEKAKKLARLFRENFEKFEDTVGEEIVA 521 (526)
T ss_pred HhcChhhccCCHHHHHHHHHHHHHHHHHHHHHhccccCHHHHh
Confidence 9999999999999999999999999987 565557777764
No 13
>PF01293 PEPCK_ATP: Phosphoenolpyruvate carboxykinase The Prosite pattern is specific to the ATP binding region; InterPro: IPR001272 Phosphoenolpyruvate carboxykinase (PEPCK) catalyses the first committed (rate-limiting) step in hepatic gluconeogenesis, namely the reversible decarboxylation of oxaloacetate to phosphoenolpyruvate (PEP) and carbon dioxide, using either ATP or GTP as a source of phosphate. The ATP-utilising (4.1.1.49 from EC) and GTP-utilising (4.1.1.32 from EC) enzymes form two divergent subfamilies, which have little sequence similarity but which retain conserved active site residues. ATP-utilising PEPCKs are monomers or oligomers of identical subunits found in certain bacteria, yeast, trypanosomatids, and plants, while GTP-utilising PEPCKs are mainly monomers found in animals and some bacteria []. Both require divalent cations for activity, such as magnesium or manganese. One cation interacts with the enzyme at metal binding site 1 to elicit activation, while the second cation interacts at metal binding site 2 to serve as a metal-nucleotide substrate. In bacteria, fungi and plants, PEPCK is involved in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle. PEPCK helps to regulate blood glucose levels. The rate of gluconeogenesis can be controlled through transcriptional regulation of the PEPCK gene by cAMP (the mediator of glucagon and catecholamines), glucocorticoids and insulin. In general, PEPCK expression is induced by glucagon, catecholamines and glucocorticoids during periods of fasting and in response to stress, but is inhibited by (glucose-induced) insulin upon feeding []. With type II diabetes, this regulation system can fail, resulting in increased gluconeogenesis that in turn raises glucose levels []. PEPCK consists of an N-terminal and a catalytic C-terminal domain, with the active site and metal ions located in a cleft between them. Both domains have an alpha/beta topology that is partly similar to one another [, ]. Substrate binding causes PEPCK to undergo a conformational change, which accelerates catalysis by forcing bulk solvent molecules out of the active site []. PCK uses an alpha/beta/alpha motif for nucleotide binding, this motif differing from other kinase domains. GTP-utilising PEPCK has a PEP-binding domain and two kinase motifs to bind GTP and magnesium. This entry represents ATP-utilising phosphoenolpyruvate carboxykinase enzymes.; GO: 0004612 phosphoenolpyruvate carboxykinase (ATP) activity, 0005524 ATP binding, 0006094 gluconeogenesis; PDB: 2PY7_X 2OLR_A 1AYL_A 1K3D_A 1OEN_A 1AQ2_A 1OS1_A 2OLQ_A 1K3C_A 2PXZ_X ....
Probab=100.00 E-value=5.4e-90 Score=749.65 Aligned_cols=444 Identities=21% Similarity=0.289 Sum_probs=353.1
Q ss_pred CcEEEeCCCHHHHHHHHHHHHHCCccccccCCCCcEEEeeCCCcccccCCCEEEEcCCCcccCcCCCCCccC-CCCCcCC
Q psy13077 47 SDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDTKPGVKG-TLGNWIS 125 (630)
Q Consensus 47 ~~I~~~~gs~ee~~~L~~~~~~~Ge~~~L~~~~g~~l~~t~p~d~aR~~~~tfIv~~~~~d~gp~~~~gi~~-~~n~~~~ 125 (630)
.+||+|++.++ |+++|+++||+. |+ ..|++++.|+.. |||||+|||||.++.. .+.||| ..|++|+
T Consensus 2 ~~v~~Nls~~~----L~e~a~~~~eg~-lt-~~Gal~v~tG~~-TGRSp~dkfIV~~~~~------~~~v~Wg~~n~~i~ 68 (466)
T PF01293_consen 2 ANVYRNLSPPE----LYEEAIKRGEGV-LT-KTGALVVNTGKF-TGRSPKDKFIVDEPGT------EDKVWWGSVNQPIS 68 (466)
T ss_dssp SEEEES--HHH----HHHHHCHTTTEE-E--TTSSEEE--TT--SSB-GGGEEEE-STTT------TTTS-BTTSBEEE-
T ss_pred CeeEeCCCHHH----HHHHHHhcCCCE-Ec-cCCCEEEeCCCc-cCCCCCceEEecCCcc------ccccccccCCcccC
Confidence 47999999987 999999999977 76 689987777765 9999999999987774 345565 6689999
Q ss_pred HHHHHHHHHhhhhhhcCCCeEEEEeccccCCCCCCCccceE-EccchHHHhhhhhcc-cCChHHhhhcCCCCCceEEEEe
Q psy13077 126 PQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVE-ITDSPYVVGSMRIMT-RIGTPVLNLLDADQPFVKALHS 203 (630)
Q Consensus 126 ~~~~~~~L~~~~~g~m~GrtmyV~~~~~Gp~gsp~~~~gV~-iTdsayv~l~m~im~-R~~~~~l~~~~~~~~Fv~~~hs 203 (630)
+++|++ |++++..++++|+|||++.++|+ +|.+++.|| ||+.||++|+++.|+ |+..+++..+.+ +|+ ++|.
T Consensus 69 ~e~f~~-L~~~v~~yL~~k~lyv~D~~vG~--d~~~~~~vRvit~~a~~aLF~~nL~~~p~~~e~~~f~p--d~t-I~~~ 142 (466)
T PF01293_consen 69 EEQFEK-LLERVVDYLSTKELYVQDGYVGA--DPDYRIKVRVITERAWHALFARNLFIRPPPEELQNFEP--DFT-IINA 142 (466)
T ss_dssp HHHHHH-HHHHHHHHHTTSEEEEEEEEESS--STTT-EEEEEEESSHHHHHHHHHHSB-GSHHHHHT-S---SEE-EEEE
T ss_pred HHHHHH-HHHHHHHHhcccceEEEEEEEec--CHHHceeEEEEeCcHHHHHHHHHhhcCCChhHhcccCC--CEE-EEeC
Confidence 999984 99999999999999999999999 999999999 899999999999998 999999998887 888 9999
Q ss_pred cCCCCCCCCcCCCCCCCCcceEEEEcCCCCeEEEEccccccccccccceeehhhhhhhhhccCcccccchhccccCCCCC
Q psy13077 204 VGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHMLILGITNPEGQ 283 (630)
Q Consensus 204 ~g~p~~~~~~~~~wpcn~e~~~I~~~~~~r~i~s~Gs~YgGnall~KK~~alrias~~a~~eGwLaeHm~i~gv~~p~G~ 283 (630)
++...++.. + +++|+ ++|++|++++.++|+||.|+|| +||++ |++||++++++|.|+|||+..- +.+|+
T Consensus 143 p~f~~~p~~-~---g~~s~-~~i~~d~~~~~~vI~Gt~Y~GE---iKK~i-ft~~n~ll~~~g~l~mH~san~--~~~gd 211 (466)
T PF01293_consen 143 PDFKADPEI-D---GTNSD-TFIIFDFERNVAVILGTRYAGE---IKKGI-FTVMNYLLPRNGVLPMHCSANV--GKDGD 211 (466)
T ss_dssp TTS--TTCH-C---T-SSS--EEEEETTTTEEEEES---THH---HHHHH-HHHHHHHHHHTT-EEEEEEEEE--ETTSS
T ss_pred CccccCCCc-C---CCCCC-cEEEEccccCeEEEECCccccc---chHHH-HHHHHHhhHhcCeEEEEeeeee--CCCCC
Confidence 996444322 2 67888 7999999999999999999999 99997 9999999999999999999542 35899
Q ss_pred EEEEEeEcCCccchhhhcccCCCCCCCeeEEeeccE-EEEEECCCccEEEeccCCCeeEeccCCCCCCcHHHHhhccCCc
Q psy13077 284 KKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDI-AWMKFDKEGVLRAINPENGFFGVAPGTSNKTNPIAMKTVFKNT 362 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam~~p~~pgwk~~lIGDDi-aW~~~~~dG~l~a~NpE~G~fgk~~g~s~~~~P~i~~ai~~~t 362 (630)
++.|| |||||||||||+ +| ++++||||+ +| +++| +||+|+|||+|+++++++++|+|+.|+++++
T Consensus 212 ~alfF--GLSGTGKTTLs~-d~-----~r~ligDDe~~w---~d~g---v~~~EggcyaKt~~l~~~~ep~i~~ai~~~a 277 (466)
T PF01293_consen 212 TALFF--GLSGTGKTTLSA-DP-----ERELIGDDEHGW---SDGG---VFNFEGGCYAKTIDLSKESEPEIYNAIKFGA 277 (466)
T ss_dssp EEEEE--ESTTSSHHHHHS-BT-----TSEEEESSEEEE---ESSE---EEES-SEEEEE-TT--TTTSHHHHHCCSTT-
T ss_pred eEEEE--ecCCCCcccccc-CC-----cceEEeCceeee---cCCc---eEeecCceeeeecCCCcccchhHHHHhccCe
Confidence 99999 999999999999 67 589999997 99 7777 6999999999999999999999999999999
Q ss_pred eeEcceEc-CCCceeccCCccCCCCCccccccCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCcCCCCcccceEEEe
Q psy13077 363 IFTNVAST-SDGGVYWEGMEDEISPDVSITDWHNKPWKKSDGTQAAHPNSRFCTPASQCPTIDPNWESHEGVPISAIIFG 441 (630)
Q Consensus 363 If~NV~~~-~dg~v~w~g~~~~~p~~~~~~dw~g~~~t~~~~~~~aHpNsRft~P~~~~pn~~~~~e~p~GvPi~aIiFg 441 (630)
|+|||++| ++|+|++++ .+.|+ |+|.+||++++||++.. ...|+| ++|||+
T Consensus 278 vlENV~~d~~~~~vd~~d----------------~s~t~---------N~R~~~p~~~i~n~~~~--~~~~~p-~~IifL 329 (466)
T PF01293_consen 278 VLENVVVDEETREVDFDD----------------DSITE---------NTRAIYPREFIPNAVDP--GDGGHP-KNIIFL 329 (466)
T ss_dssp EEES-EEETTTSCEETT------------------SS-S-----------EEEEEGGGSSSB-SS--SEES-E-EEEEEE
T ss_pred eecceEEeCCCCccCCcc----------------ccccC---------ceeEEEEhhHhhccccc--cccCCC-CEEEEE
Confidence 99999999 568877765 45674 99999999999999885 556888 899999
Q ss_pred ccCCCC-CCceEeecCccceeeccccccchhhhhhcccCceeccCCcc------CCCCCCCChHHHHHHHHHHHHhhccC
Q psy13077 442 GRRPQG-VPLVYESFDWQHGVFLGASMRSEATAAAEHKGKVIMHDPFA------MRPFFGYNFGDYLKHWLSMEQRTNAK 514 (630)
Q Consensus 442 ~rd~~g-lPpV~e~~~wq~gv~lGas~~Se~TAa~~g~~g~~~~dP~a------~~PF~~y~~g~Y~~~wl~lg~~~~~~ 514 (630)
|||++| ||||++|++.|++||| .|++||+.+|++..+ .+|.| +.|||+|||.+|+++ |.++++++
T Consensus 330 t~Da~gvlPPvskLt~~qa~~~F----~~G~t~k~agtE~g~-~ep~~~fs~~f~~PF~~~~p~~ya~~---l~~~~~~~ 401 (466)
T PF01293_consen 330 TCDAFGVLPPVSKLTPEQAMYYF----LSGYTAKVAGTERGV-TEPQATFSECFGNPFMPLPPSVYAEL---LKEKIKKH 401 (466)
T ss_dssp E--TTS-S-SEEEE-HHHHHHHH----HH-EEEEETTSBTTS-SSEEEEE-GGG-GGG-SS-HHHHHHH---HHHHHHHH
T ss_pred ECCCCCCCCcceeCCHHHHHHHH----HHHHHhhhcccccCc-cCCCCceecccCCCCccCCHHHHHHH---HHHHHHhc
Confidence 999999 8999999999999999 788999999985544 45654 779999999999999 55888889
Q ss_pred CCcEEEEeeeeeCCCCCcccCCCcchhHH-HHH---HHHhHhcCcc---ceecCc-ccc-cCCCCCcCCCCCCchh
Q psy13077 515 LPKVFHVNWFRKGSQGEFLWPGFGENIRV-LDW---ILRRVENNKE---IAEASP-IGY-IPKPEALITTNLASDV 581 (630)
Q Consensus 515 ~pkif~VN~F~~g~~G~flWpG~G~n~Rv-L~w---i~~r~~~G~~---~~~~tp-~G~-iP~~~~l~~~Gl~~~~ 581 (630)
..+||+|| |||.|+ .||.++|| |++ |+++|++|++ .+..+| ||+ ||++ |+|||++|
T Consensus 402 ~~~~yl~N---TG~~gg----~~~~g~ri~~~~t~~~i~~il~g~l~~~~~~~~~~f~~~ip~~----~~gv~~~~ 466 (466)
T PF01293_consen 402 GVNCYLVN---TGWTGG----PYGVGKRIPLEYTRAIIEAILDGTLEFVEFEKDPIFGLEIPTS----CPGVPSEI 466 (466)
T ss_dssp T-EEEEEE----SBETT----SCCCSSB--HHHHHHHHHHHHTSGCCTS-EEEETTTTEEEES-----BTTS-GCC
T ss_pred CCCEEEEe---CCccCC----CCCceeECCHHHHHHHHHHHhcCCccCCCceEcCccCeecccc----CCCCCCCC
Confidence 99999999 998887 69999999 987 9999999997 666678 999 9999 99999654
No 14
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.65 E-value=5.1e-17 Score=146.94 Aligned_cols=70 Identities=29% Similarity=0.203 Sum_probs=57.4
Q ss_pred CcccccchhccccCCCCCEEEEEeEcCCccchhhhcccCCCCCCCeeEEeeccEEEEEECCCccEEEeccCCCeeEe
Q psy13077 266 GWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDIAWMKFDKEGVLRAINPENGFFGV 342 (630)
Q Consensus 266 GwLaeHm~i~gv~~p~G~~~~f~~afpSg~GKTtLam~~p~~pgwk~~lIGDDiaW~~~~~dG~l~a~NpE~G~fgk 342 (630)
||++.|+..+.+ +.|+...+. ||||||||||+++-+ ..++.+.|||+.+|+.++.+++++++||.+||+.
T Consensus 1 ~~~aL~~vsl~i--~~ge~v~I~--GpSGsGKSTLl~~l~---~G~i~~~g~di~~~~~~~~~~~~~~~~q~lf~~t 70 (107)
T cd00820 1 GTTSLHGVLVDV--YGKVGVLIT--GDSGIGKTELALELI---KRKHRLVGDDNVEIREDSKDELIGRNPELGLEIR 70 (107)
T ss_pred CceEEEeeEEEE--cCCEEEEEE--cCCCCCHHHHHHHhh---CCeEEEeeEeHHHhhhhhcCCEEEEechhcchhh
Confidence 789999986655 457777777 999999999998755 3479999999988886778999999999977644
No 15
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.40 E-value=0.0019 Score=62.18 Aligned_cols=60 Identities=30% Similarity=0.375 Sum_probs=41.6
Q ss_pred ccccchhccccCCCCCEEEEEeEcCCccchhhhcccCCCCCCCeeEEeeccEEEEEECCCccEEEeccC
Q psy13077 268 LAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDIAWMKFDKEGVLRAINPE 336 (630)
Q Consensus 268 LaeHm~i~gv~~p~G~~~~f~~afpSg~GKTtLam~~p~~pgwk~~lIGDDiaW~~~~~dG~l~a~NpE 336 (630)
...|.+.+.+ .|.-..|. |+||+||||||. .=-..| -.+|+||...++. .+|++++-.|+
T Consensus 3 ~~~H~~~v~~---~g~gvLi~--G~sG~GKStlal-~L~~~g--~~lvaDD~v~v~~-~~~~l~~~~p~ 62 (149)
T cd01918 3 VTVHGVLVEV---GGIGVLIT--GPSGIGKSELAL-ELIKRG--HRLVADDRVVVKR-EGGRLVGRAPE 62 (149)
T ss_pred ccEEEEEEEE---CCEEEEEE--cCCCCCHHHHHH-HHHHcC--CeEEECCEEEEEE-ECCEEEEeChH
Confidence 3568876544 35557888 999999999986 111125 4799999877763 45777666665
No 16
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.91 E-value=0.018 Score=62.30 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=17.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
.+|+-..+. ||||||||||--
T Consensus 27 ~~Gef~vll--GPSGcGKSTlLr 47 (338)
T COG3839 27 EDGEFVVLL--GPSGCGKSTLLR 47 (338)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 678877777 999999999843
No 17
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.87 E-value=0.014 Score=57.21 Aligned_cols=33 Identities=30% Similarity=0.487 Sum_probs=24.4
Q ss_pred ccccchh--ccccCCCCCEEEEEeEcCCccchhhhcc
Q psy13077 268 LAEHMLI--LGITNPEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 268 LaeHm~i--~gv~~p~G~~~~f~~afpSg~GKTtLam 302 (630)
|..||++ +-.|=.+|+..-+. |||||||+||-.
T Consensus 12 l~g~cLLa~~n~Tia~GeivtlM--GPSGcGKSTLls 46 (213)
T COG4136 12 LPGSCLLANVNFTIAKGEIVTLM--GPSGCGKSTLLS 46 (213)
T ss_pred CCCceEEEeeeEEecCCcEEEEE--CCCCccHHHHHH
Confidence 5678862 22344679888888 999999999854
No 18
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.75 E-value=0.022 Score=61.92 Aligned_cols=37 Identities=32% Similarity=0.492 Sum_probs=23.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcccCC----CCCCCeeEEeeccE
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAMLNP----TLPGYKVECVGDDI 319 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~~p----~~pgwk~~lIGDDi 319 (630)
++|+..-+. ||||||||||-++-. +..| ++.+=|-|+
T Consensus 29 ~~Gef~~lL--GPSGcGKTTlLR~IAGfe~p~~G-~I~l~G~~i 69 (352)
T COG3842 29 KKGEFVTLL--GPSGCGKTTLLRMIAGFEQPSSG-EILLDGEDI 69 (352)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEC
Confidence 568655555 999999999976432 2344 444444444
No 19
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=94.20 E-value=0.031 Score=55.17 Aligned_cols=61 Identities=28% Similarity=0.265 Sum_probs=39.9
Q ss_pred ccccchhccccCCCCCEEEEEeEcCCccchhhhcccCCCCCCCeeEEeeccEEEEEECCCccEEEeccC
Q psy13077 268 LAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDIAWMKFDKEGVLRAINPE 336 (630)
Q Consensus 268 LaeHm~i~gv~~p~G~~~~f~~afpSg~GKTtLam~~p~~pgwk~~lIGDDiaW~~~~~dG~l~a~NpE 336 (630)
...|.+.+.| .|.-..++ |+||.|||+||. .=-..| -.+|+||...++...++.|++-.|+
T Consensus 7 ~~~Hg~~v~i---~G~GVLi~--G~SG~GKS~lAl-~Li~rG--h~lvaDD~v~i~~~~~~~l~g~~p~ 67 (171)
T PF07475_consen 7 TTLHGSLVDI---GGVGVLIT--GPSGIGKSELAL-ELIKRG--HRLVADDRVEIRRIGGRTLIGRAPE 67 (171)
T ss_dssp EEEESEEEEE---TTEEEEEE--ESTTSSHHHHHH-HHHHTT---EEEESSEEEEEECTTCEEEEEE-G
T ss_pred ceeeEEEEEE---CCEEEEEE--CCCCCCHHHHHH-HHHHCC--CeEEeCCEEEEEECCCCEEEEeCCh
Confidence 4567765543 46568888 999999999986 111136 4999999877775555545544433
No 20
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.85 E-value=0.05 Score=54.34 Aligned_cols=21 Identities=38% Similarity=0.543 Sum_probs=17.9
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+.+.++ |||||||+||--
T Consensus 27 ~~Ge~iait--GPSG~GKStllk 47 (223)
T COG4619 27 RAGEFIAIT--GPSGCGKSTLLK 47 (223)
T ss_pred cCCceEEEe--CCCCccHHHHHH
Confidence 458889999 999999999843
No 21
>PTZ00301 uridine kinase; Provisional
Probab=93.76 E-value=0.041 Score=55.60 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=13.8
Q ss_pred EEEeEcCCccchhhhcc
Q psy13077 286 YIAAAFPSACGKTNLAM 302 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam 302 (630)
.+.-||+|||||||||.
T Consensus 5 iIgIaG~SgSGKTTla~ 21 (210)
T PTZ00301 5 VIGISGASGSGKSSLST 21 (210)
T ss_pred EEEEECCCcCCHHHHHH
Confidence 44456999999999994
No 22
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.74 E-value=0.038 Score=57.45 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=16.8
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
++|+..-+. ||||||||||--
T Consensus 27 ~~GEfvsil--GpSGcGKSTLLr 47 (248)
T COG1116 27 EKGEFVAIL--GPSGCGKSTLLR 47 (248)
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 568766666 999999999854
No 23
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.74 E-value=0.038 Score=56.32 Aligned_cols=22 Identities=41% Similarity=0.604 Sum_probs=18.0
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+...+. ||||||||||--+
T Consensus 29 a~ge~vv~l--GpSGcGKTTLLnl 50 (259)
T COG4525 29 ASGELVVVL--GPSGCGKTTLLNL 50 (259)
T ss_pred cCCCEEEEE--cCCCccHHHHHHH
Confidence 458887777 9999999999553
No 24
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.49 E-value=0.03 Score=54.68 Aligned_cols=33 Identities=33% Similarity=0.220 Sum_probs=23.6
Q ss_pred EEeEcCCccchhhhcccC-CCCCCCeeEEeeccE
Q psy13077 287 IAAAFPSACGKTNLAMLN-PTLPGYKVECVGDDI 319 (630)
Q Consensus 287 f~~afpSg~GKTtLam~~-p~~pgwk~~lIGDDi 319 (630)
++-+|||||||||||..- ..+.+.++.+++.|-
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~ 35 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDS 35 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 345699999999998732 223455788888885
No 25
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.39 E-value=0.047 Score=47.15 Aligned_cols=19 Identities=42% Similarity=0.518 Sum_probs=16.2
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
+....++ ||+|||||||+.
T Consensus 2 ~~~~~l~--G~~G~GKTtl~~ 20 (148)
T smart00382 2 GEVILIV--GPPGSGKTTLAR 20 (148)
T ss_pred CCEEEEE--CCCCCcHHHHHH
Confidence 4567778 999999999987
No 26
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.30 E-value=0.044 Score=48.74 Aligned_cols=14 Identities=36% Similarity=0.489 Sum_probs=12.4
Q ss_pred eEcCCccchhhhcc
Q psy13077 289 AAFPSACGKTNLAM 302 (630)
Q Consensus 289 ~afpSg~GKTtLam 302 (630)
-+|+|||||||+|.
T Consensus 4 I~G~~gsGKST~a~ 17 (121)
T PF13207_consen 4 ISGPPGSGKSTLAK 17 (121)
T ss_dssp EEESTTSSHHHHHH
T ss_pred EECCCCCCHHHHHH
Confidence 34999999999987
No 27
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.89 E-value=0.059 Score=55.46 Aligned_cols=20 Identities=35% Similarity=0.669 Sum_probs=16.7
Q ss_pred CCCCEEEEEeEcCCccchhhhc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLA 301 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLa 301 (630)
|+++++-+. ||||||||||-
T Consensus 31 ~~~~VTAlI--GPSGcGKST~L 50 (253)
T COG1117 31 PKNKVTALI--GPSGCGKSTLL 50 (253)
T ss_pred cCCceEEEE--CCCCcCHHHHH
Confidence 677777777 99999999985
No 28
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.81 E-value=0.065 Score=55.10 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=17.9
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||-.
T Consensus 29 ~~Ge~vaI~--GpSGSGKSTLLn 49 (226)
T COG1136 29 EAGEFVAIV--GPSGSGKSTLLN 49 (226)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 678887777 999999999854
No 29
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.77 E-value=0.056 Score=53.49 Aligned_cols=21 Identities=38% Similarity=0.336 Sum_probs=16.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|...-+. |+||||||||+-
T Consensus 4 ~~g~vi~I~--G~sGsGKSTl~~ 24 (207)
T TIGR00235 4 PKGIIIGIG--GGSGSGKTTVAR 24 (207)
T ss_pred CCeEEEEEE--CCCCCCHHHHHH
Confidence 556554455 999999999986
No 30
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=92.46 E-value=0.065 Score=54.85 Aligned_cols=38 Identities=29% Similarity=0.116 Sum_probs=28.4
Q ss_pred CCEEEEEeEcCCccchhhhccc-CCCCCCCeeEEeeccE
Q psy13077 282 GQKKYIAAAFPSACGKTNLAML-NPTLPGYKVECVGDDI 319 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam~-~p~~pgwk~~lIGDDi 319 (630)
-+...+.-||+|||||||+|-. .-.++++++.+|.-|=
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~ 44 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDD 44 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccc
Confidence 3458888889999999999863 2335667788888664
No 31
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.37 E-value=0.081 Score=54.48 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|++..+. ||||||||||--
T Consensus 26 ~~Gevv~ii--GpSGSGKSTlLR 46 (240)
T COG1126 26 EKGEVVVII--GPSGSGKSTLLR 46 (240)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 579999999 999999999853
No 32
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=92.32 E-value=0.068 Score=52.39 Aligned_cols=16 Identities=56% Similarity=0.607 Sum_probs=13.8
Q ss_pred EEeEcCCccchhhhcc
Q psy13077 287 IAAAFPSACGKTNLAM 302 (630)
Q Consensus 287 f~~afpSg~GKTtLam 302 (630)
++-+|+|||||||||-
T Consensus 2 IgI~G~sgSGKTTla~ 17 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAK 17 (194)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 4556999999999987
No 33
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=92.30 E-value=0.078 Score=55.86 Aligned_cols=21 Identities=33% Similarity=0.335 Sum_probs=17.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
++|+-..+. |||||||||+--
T Consensus 25 ~~gef~vli--GpSGsGKTTtLk 45 (309)
T COG1125 25 EEGEFLVLI--GPSGSGKTTTLK 45 (309)
T ss_pred cCCeEEEEE--CCCCCcHHHHHH
Confidence 678777777 999999999854
No 34
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.07 E-value=0.093 Score=51.25 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=18.0
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. ||||||||||+.+
T Consensus 3 ~~g~~i~i~--G~sGsGKstl~~~ 24 (205)
T PRK00300 3 RRGLLIVLS--GPSGAGKSTLVKA 24 (205)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 357777777 9999999999873
No 35
>PRK08233 hypothetical protein; Provisional
Probab=91.93 E-value=0.086 Score=50.01 Aligned_cols=18 Identities=44% Similarity=0.385 Sum_probs=14.5
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
..++.+|+|||||||||.
T Consensus 4 ~iI~I~G~~GsGKtTla~ 21 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTE 21 (182)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 444555999999999987
No 36
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.84 E-value=0.14 Score=53.43 Aligned_cols=37 Identities=32% Similarity=0.355 Sum_probs=26.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc----cCCCCCCCeeEEeeccE
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGDDI 319 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam----~~p~~pgwk~~lIGDDi 319 (630)
+.|+..-|. ||||||||||-- +-++..| ++++-|.|+
T Consensus 32 ~~Gei~~ii--GgSGsGKStlLr~I~Gll~P~~G-eI~i~G~~i 72 (263)
T COG1127 32 PRGEILAIL--GGSGSGKSTLLRLILGLLRPDKG-EILIDGEDI 72 (263)
T ss_pred cCCcEEEEE--CCCCcCHHHHHHHHhccCCCCCC-eEEEcCcch
Confidence 779888888 999999999843 2233455 455666555
No 37
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=91.78 E-value=0.11 Score=51.11 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||--
T Consensus 19 ~~G~~~~l~--G~nG~GKSTLl~ 39 (176)
T cd03238 19 PLNVLVVVT--GVSGSGKSTLVN 39 (176)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 678888888 999999999965
No 38
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=91.74 E-value=0.091 Score=47.86 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=13.6
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.+++ ||+||||||||.
T Consensus 2 ii~~--G~pgsGKSt~a~ 17 (143)
T PF13671_consen 2 IILC--GPPGSGKSTLAK 17 (143)
T ss_dssp EEEE--ESTTSSHHHHHH
T ss_pred EEEE--CCCCCCHHHHHH
Confidence 3455 999999999987
No 39
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=91.72 E-value=0.13 Score=55.11 Aligned_cols=93 Identities=16% Similarity=0.107 Sum_probs=57.2
Q ss_pred CCCCeEEEEccccccccccccceeehhhhhhhhh-ccCcccccchhccccCCCCCEEEEEeEcCCccchhhhcccCCCCC
Q psy13077 230 PAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAK-REGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLP 308 (630)
Q Consensus 230 ~~~r~i~s~Gs~YgGnall~KK~~alrias~~a~-~eGwLaeHm~i~gv~~p~G~~~~f~~afpSg~GKTtLam~~p~~p 308 (630)
-++..|-++-|-+.+.. +...+-.|+.. -.+-...|.+.+.+ .|.-..+. |+||.||||||. .=-..
T Consensus 102 a~~~~ip~l~t~~~~~~------~~~~l~~~L~~~la~~~~~hg~~v~i---~g~gvli~--G~sg~GKS~lal-~Li~r 169 (304)
T TIGR00679 102 NETYQVPILKTDLFSTE------LSFRLETYLNEQFAPTAAIHGVLVEV---YGVGVLIT--GKSGVGKSETAL-ELINR 169 (304)
T ss_pred HHHhCCcEEEeCCcHHH------HHHHHHHHHHHhhccceeeeeEEEEE---CCEEEEEE--cCCCCCHHHHHH-HHHHc
Confidence 34555556667776663 22233333332 13566888875543 46668888 999999999876 11013
Q ss_pred CCeeEEeeccEEEEEECCCccEEEeccC
Q psy13077 309 GYKVECVGDDIAWMKFDKEGVLRAINPE 336 (630)
Q Consensus 309 gwk~~lIGDDiaW~~~~~dG~l~a~NpE 336 (630)
| -.+|.||...++-..+|+|++--||
T Consensus 170 g--~~lvaDD~~~~~~~~~~~L~g~~p~ 195 (304)
T TIGR00679 170 G--HRLVADDAVEIYRLNGNRLFGRAQE 195 (304)
T ss_pred C--CceeecCeEEEEEecCCEEEEeCCh
Confidence 5 4799999877774456766555444
No 40
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=91.70 E-value=0.1 Score=51.22 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=19.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|....++ |++|||||+|++
T Consensus 10 ~~g~i~~i~--G~~GsGKT~l~~ 30 (209)
T TIGR02237 10 ERGTITQIY--GPPGSGKTNICM 30 (209)
T ss_pred CCCeEEEEE--CCCCCCHHHHHH
Confidence 779999999 999999999998
No 41
>PRK06696 uridine kinase; Validated
Probab=91.64 E-value=0.1 Score=52.36 Aligned_cols=21 Identities=29% Similarity=0.172 Sum_probs=18.1
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
++...++.+|+|||||||||.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~ 40 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFAD 40 (223)
T ss_pred CCceEEEEECCCCCCHHHHHH
Confidence 456788888999999999986
No 42
>PRK05480 uridine/cytidine kinase; Provisional
Probab=91.63 E-value=0.11 Score=51.40 Aligned_cols=19 Identities=37% Similarity=0.240 Sum_probs=15.1
Q ss_pred EEEEeEcCCccchhhhccc
Q psy13077 285 KYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam~ 303 (630)
..++-+|+||||||||+..
T Consensus 7 ~iI~I~G~sGsGKTTl~~~ 25 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVAST 25 (209)
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4555559999999999873
No 43
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.55 E-value=0.1 Score=49.89 Aligned_cols=18 Identities=33% Similarity=0.445 Sum_probs=14.2
Q ss_pred CEEEEEeEcCCccchhhhcc
Q psy13077 283 QKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam 302 (630)
+...+. ||||||||||+-
T Consensus 2 ~~~~i~--G~sGsGKttl~~ 19 (179)
T TIGR02322 2 RLIYVV--GPSGAGKDTLLD 19 (179)
T ss_pred cEEEEE--CCCCCCHHHHHH
Confidence 344555 999999999984
No 44
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.49 E-value=0.12 Score=55.95 Aligned_cols=63 Identities=27% Similarity=0.334 Sum_probs=43.0
Q ss_pred hhhhhhhhhccCcccccchhccccC-----CCCCEEEEEeEcCCccchhhhccc----CCCCCCCeeEEeeccEE
Q psy13077 255 LRIGSTIAKREGWLAEHMLILGITN-----PEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGDDIA 320 (630)
Q Consensus 255 lrias~~a~~eGwLaeHm~i~gv~~-----p~G~~~~f~~afpSg~GKTtLam~----~p~~pgwk~~lIGDDia 320 (630)
+++...=..+.-+++.+...+|+.+ ++|+...+. |+|||||+||.-+ .++-.| ++.+=|+|++
T Consensus 22 ~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViM--GLSGSGKSTLvR~~NrLiept~G-~ilv~g~di~ 93 (386)
T COG4175 22 LKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIM--GLSGSGKSTLVRLLNRLIEPTRG-EILVDGKDIA 93 (386)
T ss_pred HHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEE--ecCCCCHHHHHHHHhccCCCCCc-eEEECCcchh
Confidence 5544433446668888888888765 568878888 9999999999752 222345 4666666663
No 45
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=91.34 E-value=0.11 Score=51.99 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=25.9
Q ss_pred CCCCEEEEEeEcCCccchhhhcccCCC---CCCCeeEEee
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAMLNPT---LPGYKVECVG 316 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~~p~---~pgwk~~lIG 316 (630)
.+|-+.+|+ ||||+||||||.+--. ..|+.+.++=
T Consensus 21 ~~~~viW~T--GLSGsGKSTiA~ale~~L~~~G~~~y~LD 58 (197)
T COG0529 21 QKGAVIWFT--GLSGSGKSTIANALEEKLFAKGYHVYLLD 58 (197)
T ss_pred CCCeEEEee--cCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 457789999 9999999999973211 2577777663
No 46
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=91.19 E-value=0.13 Score=50.37 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=17.1
Q ss_pred CCEEEEEeEcCCccchhhhccc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam~ 303 (630)
|+...+. ||||||||||+-+
T Consensus 3 ge~i~l~--G~sGsGKSTl~~~ 22 (176)
T PRK09825 3 GESYILM--GVSGSGKSLIGSK 22 (176)
T ss_pred CcEEEEE--CCCCCCHHHHHHH
Confidence 6777788 9999999999863
No 47
>PRK14738 gmk guanylate kinase; Provisional
Probab=91.15 E-value=0.14 Score=51.11 Aligned_cols=19 Identities=26% Similarity=0.204 Sum_probs=14.8
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
++..++. ||||||||||+-
T Consensus 13 ~~~ivi~--GpsG~GK~tl~~ 31 (206)
T PRK14738 13 PLLVVIS--GPSGVGKDAVLA 31 (206)
T ss_pred CeEEEEE--CcCCCCHHHHHH
Confidence 4455555 999999999965
No 48
>PRK00131 aroK shikimate kinase; Reviewed
Probab=91.15 E-value=0.13 Score=48.04 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=17.0
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
++...+++ |++||||||+|-
T Consensus 3 ~~~~i~l~--G~~GsGKstla~ 22 (175)
T PRK00131 3 KGPNIVLI--GFMGAGKSTIGR 22 (175)
T ss_pred CCCeEEEE--cCCCCCHHHHHH
Confidence 46677788 999999999976
No 49
>PRK08118 topology modulation protein; Reviewed
Probab=91.10 E-value=0.12 Score=50.02 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=14.7
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
+.+++ |||||||||||-
T Consensus 3 rI~I~--G~~GsGKSTlak 19 (167)
T PRK08118 3 KIILI--GSGGSGKSTLAR 19 (167)
T ss_pred EEEEE--CCCCCCHHHHHH
Confidence 46677 999999999987
No 50
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.06 E-value=0.13 Score=49.14 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=15.3
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
|+...+. ||||||||||+.
T Consensus 1 g~ii~l~--G~~GsGKsTl~~ 19 (180)
T TIGR03263 1 GLLIVIS--GPSGVGKSTLVK 19 (180)
T ss_pred CcEEEEE--CCCCCCHHHHHH
Confidence 4455666 999999999976
No 51
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.01 E-value=0.15 Score=51.28 Aligned_cols=45 Identities=24% Similarity=0.418 Sum_probs=34.7
Q ss_pred CCCCEEEEEeEcCCccchhhhccc----CCCCCCCeeEEeeccEEEEEECCCcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGDDIAWMKFDKEGV 329 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~----~p~~pgwk~~lIGDDiaW~~~~~dG~ 329 (630)
..|++.-+. ||||+||+||-|+ +-+..| .|.+.|-+..=| |+|++
T Consensus 34 ~~Ge~vaiV--G~SGSGKSTLl~vlAGLd~~ssG-eV~l~G~~L~~l--dEd~r 82 (228)
T COG4181 34 KRGETVAIV--GPSGSGKSTLLAVLAGLDDPSSG-EVRLLGQPLHKL--DEDAR 82 (228)
T ss_pred cCCceEEEE--cCCCCcHHhHHHHHhcCCCCCCc-eEEEcCcchhhc--CHHHH
Confidence 458888777 9999999999874 334456 699999997433 88886
No 52
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=90.98 E-value=0.17 Score=42.20 Aligned_cols=19 Identities=37% Similarity=0.670 Sum_probs=16.8
Q ss_pred CCCCEEEEEeEcCCccchhhh
Q psy13077 280 PEGQKKYIAAAFPSACGKTNL 300 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtL 300 (630)
+.|+...|. |+||+|||||
T Consensus 21 ~~g~~tli~--G~nGsGKSTl 39 (62)
T PF13555_consen 21 PRGDVTLIT--GPNGSGKSTL 39 (62)
T ss_pred CCCcEEEEE--CCCCCCHHHH
Confidence 567788888 9999999998
No 53
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=90.78 E-value=0.14 Score=53.26 Aligned_cols=23 Identities=35% Similarity=0.307 Sum_probs=19.4
Q ss_pred CCCCCEEEEEeEcCCccchhhhccc
Q psy13077 279 NPEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 279 ~p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
=..|++.=+. |+||||||||+.+
T Consensus 30 i~~Ge~lgiv--GeSGsGKSTL~r~ 52 (252)
T COG1124 30 IERGETLGIV--GESGSGKSTLARL 52 (252)
T ss_pred ecCCCEEEEE--cCCCCCHHHHHHH
Confidence 3678887777 9999999999884
No 54
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=90.73 E-value=0.14 Score=49.82 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=15.5
Q ss_pred CCEEEEEeEcCCccchhhhccc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam~ 303 (630)
|+...+. ||||||||||+.+
T Consensus 2 g~~i~l~--G~sGsGKsTl~~~ 21 (186)
T PRK10078 2 GKLIWLM--GPSGSGKDSLLAA 21 (186)
T ss_pred CcEEEEE--CCCCCCHHHHHHH
Confidence 4445555 9999999999874
No 55
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=90.69 E-value=0.15 Score=51.48 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=18.6
Q ss_pred CCCCCEEEEEeEcCCccchhhhcc
Q psy13077 279 NPEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 279 ~p~G~~~~f~~afpSg~GKTtLam 302 (630)
=+.|+..-+. |+||||||||++
T Consensus 18 i~~Ge~~~l~--G~sGsGKSTL~~ 39 (226)
T cd03270 18 IPRNKLVVIT--GVSGSGKSSLAF 39 (226)
T ss_pred cCCCcEEEEE--cCCCCCHHHHHH
Confidence 3679887777 999999999974
No 56
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=90.60 E-value=0.21 Score=54.70 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=20.7
Q ss_pred CCCCEEEEEeEcCCccchhhhcc----cCCCCCC
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM----LNPTLPG 309 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam----~~p~~pg 309 (630)
+.|+..-++ ||||||||||.- +.++..|
T Consensus 43 ~~Ge~~~ll--GpsGsGKSTLLr~IaGl~~p~~G 74 (377)
T PRK11607 43 YKGEIFALL--GASGCGKSTLLRMLAGFEQPTAG 74 (377)
T ss_pred cCCCEEEEE--CCCCCcHHHHHHHHhCCCCCCce
Confidence 468877788 999999999943 3444455
No 57
>PRK05541 adenylylsulfate kinase; Provisional
Probab=90.53 E-value=0.17 Score=48.42 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=17.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|....|. |+|||||||+|-
T Consensus 5 ~~~~~I~i~--G~~GsGKst~a~ 25 (176)
T PRK05541 5 PNGYVIWIT--GLAGSGKTTIAK 25 (176)
T ss_pred CCCCEEEEE--cCCCCCHHHHHH
Confidence 456677777 999999999986
No 58
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=90.49 E-value=0.15 Score=50.40 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=19.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|+...++ |+||||||||++
T Consensus 17 ~~g~i~~i~--G~~GsGKT~l~~ 37 (218)
T cd01394 17 ERGTVTQVY--GPPGTGKTNIAI 37 (218)
T ss_pred cCCeEEEEE--CCCCCCHHHHHH
Confidence 678888899 999999999988
No 59
>PRK07261 topology modulation protein; Provisional
Probab=90.47 E-value=0.15 Score=49.44 Aligned_cols=17 Identities=41% Similarity=0.258 Sum_probs=14.3
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
+..+. |+|||||||||.
T Consensus 2 ri~i~--G~~GsGKSTla~ 18 (171)
T PRK07261 2 KIAII--GYSGSGKSTLAR 18 (171)
T ss_pred EEEEE--cCCCCCHHHHHH
Confidence 34566 999999999997
No 60
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=90.45 E-value=0.24 Score=48.75 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. ||||||||||..+
T Consensus 26 ~~G~~~~l~--G~nGsGKSTLl~~ 47 (214)
T TIGR02673 26 RKGEFLFLT--GPSGAGKTTLLKL 47 (214)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999763
No 61
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=90.41 E-value=0.24 Score=49.82 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.0
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+...+. ||||||||||..+
T Consensus 25 ~~Ge~~~i~--G~nGsGKSTLl~~ 46 (236)
T TIGR03864 25 RPGEFVALL--GPNGAGKSTLFSL 46 (236)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468888888 9999999999763
No 62
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=90.35 E-value=0.19 Score=44.13 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=17.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.+...++. ||+|||||+|+.
T Consensus 17 ~~~~~v~i~--G~~G~GKT~l~~ 37 (151)
T cd00009 17 PPPKNLLLY--GPPGTGKTTLAR 37 (151)
T ss_pred CCCCeEEEE--CCCCCCHHHHHH
Confidence 345667787 999999999987
No 63
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=90.28 E-value=0.13 Score=51.86 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=16.9
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
++...++-+||||+|||||+-
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~ 51 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAE 51 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 455666667999999999875
No 64
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=90.27 E-value=0.15 Score=49.63 Aligned_cols=35 Identities=31% Similarity=0.273 Sum_probs=23.9
Q ss_pred CCEEEEEeEcCCccchhhhcccCC-C--CCCCeeEEeecc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAMLNP-T--LPGYKVECVGDD 318 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam~~p-~--~pgwk~~lIGDD 318 (630)
|-+.+|+ |+||+||||||..-- . ..|+++.++.=|
T Consensus 2 g~vIwlt--GlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD 39 (156)
T PF01583_consen 2 GFVIWLT--GLSGSGKTTLARALERRLFARGIKVYLLDGD 39 (156)
T ss_dssp -EEEEEE--SSTTSSHHHHHHHHHHHHHHTTS-EEEEEHH
T ss_pred CEEEEEE--CCCCCCHHHHHHHHHHHHHHcCCcEEEecCc
Confidence 5567888 999999999997311 1 146778887555
No 65
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=90.25 E-value=0.17 Score=48.63 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=16.2
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
|+..++. |+|||||||+|.
T Consensus 2 ~~~i~l~--G~~gsGKst~a~ 20 (175)
T cd00227 2 GRIIILN--GGSSAGKSSIAR 20 (175)
T ss_pred CCEEEEE--CCCCCCHHHHHH
Confidence 5566667 999999999997
No 66
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=90.01 E-value=0.12 Score=58.59 Aligned_cols=70 Identities=34% Similarity=0.488 Sum_probs=47.0
Q ss_pred CCCCEEEEEeEcCCccchhhhcccC----CCCCCCeeEEeeccE-EEEEECCCccEEEeccCCCeeEeccCCCCCCcHHH
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGDDI-AWMKFDKEGVLRAINPENGFFGVAPGTSNKTNPIA 354 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~~----p~~pgwk~~lIGDDi-aW~~~~~dG~l~a~NpE~G~fgk~~g~s~~~~P~i 354 (630)
+.|+..=+. ||||+|||||+-+- |+..| +|++=|-|+ -| |.+ .||+-+|+-+.+ =
T Consensus 360 ~~G~~lgII--GPSgSGKSTLaR~lvG~w~p~~G-~VRLDga~l~qW---d~e-----------~lG~hiGYLPQd-V-- 419 (580)
T COG4618 360 QAGEALGII--GPSGSGKSTLARLLVGIWPPTSG-SVRLDGADLRQW---DRE-----------QLGRHIGYLPQD-V-- 419 (580)
T ss_pred cCCceEEEE--CCCCccHHHHHHHHHcccccCCC-cEEecchhhhcC---CHH-----------HhccccCcCccc-c--
Confidence 347666666 99999999998632 44456 677777776 67 433 377777775431 1
Q ss_pred HhhccCCceeEcceEcC
Q psy13077 355 MKTVFKNTIFTNVASTS 371 (630)
Q Consensus 355 ~~ai~~~tIf~NV~~~~ 371 (630)
-+-.|||-||++--+
T Consensus 420 --eLF~GTIaeNIaRf~ 434 (580)
T COG4618 420 --ELFDGTIAENIARFG 434 (580)
T ss_pred --eecCCcHHHHHHhcc
Confidence 134689999987654
No 67
>PRK06547 hypothetical protein; Provisional
Probab=89.88 E-value=0.19 Score=49.21 Aligned_cols=21 Identities=33% Similarity=0.214 Sum_probs=16.2
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
+....+...|+|||||||||-
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~ 33 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAG 33 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 334555666999999999986
No 68
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=89.85 E-value=0.19 Score=50.04 Aligned_cols=21 Identities=29% Similarity=0.184 Sum_probs=19.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|+...+. |+||||||+|++
T Consensus 17 ~~g~i~~i~--G~~GsGKT~l~~ 37 (235)
T cd01123 17 ETGSITEIF--GEFGSGKTQLCH 37 (235)
T ss_pred CCCeEEEEE--CCCCCCHHHHHH
Confidence 678888888 999999999997
No 69
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=89.70 E-value=0.19 Score=45.65 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. |++|||||||.-
T Consensus 9 ~~g~~~~i~--G~nGsGKStLl~ 29 (137)
T PF00005_consen 9 KPGEIVAIV--GPNGSGKSTLLK 29 (137)
T ss_dssp ETTSEEEEE--ESTTSSHHHHHH
T ss_pred cCCCEEEEE--ccCCCcccccee
Confidence 568888899 999999999965
No 70
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=89.67 E-value=0.26 Score=52.93 Aligned_cols=92 Identities=21% Similarity=0.142 Sum_probs=51.9
Q ss_pred cCCCCeEEEEccccccccccccceeehhhhhhhhhccCcccccchhccccCCCCCEEEEEeEcCCccchhhhcccCCCCC
Q psy13077 229 KPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLP 308 (630)
Q Consensus 229 ~~~~r~i~s~Gs~YgGnall~KK~~alrias~~a~~eGwLaeHm~i~gv~~p~G~~~~f~~afpSg~GKTtLam~~p~~p 308 (630)
.-++..|-++-|.+.-..+ +-+. ..=+...+|++ ...|...+-| .|.-..+. |+||.|||+||. .=-.-
T Consensus 101 ~a~~~~ipll~t~~~t~~~-i~~l-~~~L~~~la~~---~~iHg~~v~V---~G~GvLi~--G~SG~GKSelAL-eLi~r 169 (308)
T PRK05428 101 AAKEAGIPLLRTPLSTTRL-ISKL-TNYLDRKLAPR---TSVHGVLVDI---YGIGVLIT--GESGIGKSETAL-ELIKR 169 (308)
T ss_pred HHHHcCCcEEEeCCcHHHH-HHHH-HHHHHHHhhhc---ceeeeEEEEE---CCEEEEEE--cCCCCCHHHHHH-HHHHc
Confidence 3456666677777755432 1111 12222333333 3557664433 35558888 999999999886 11012
Q ss_pred CCeeEEeeccEEEEEECCCccEEEe
Q psy13077 309 GYKVECVGDDIAWMKFDKEGVLRAI 333 (630)
Q Consensus 309 gwk~~lIGDDiaW~~~~~dG~l~a~ 333 (630)
| -.+|+||...++-..+..|.+-
T Consensus 170 G--h~LVaDD~v~i~~~~~~~L~g~ 192 (308)
T PRK05428 170 G--HRLVADDAVDIKRIGPDTLEGR 192 (308)
T ss_pred C--CceEecCeEEEEEecCCEEEee
Confidence 5 4799999887773333334333
No 71
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.65 E-value=0.23 Score=51.55 Aligned_cols=30 Identities=33% Similarity=0.437 Sum_probs=23.8
Q ss_pred CCCCEEEEEeEcCCccchhhhcccCCCCCCCe
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAMLNPTLPGYK 311 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~~p~~pgwk 311 (630)
+.|+++-+. ||.|+||||||..---.|+|+
T Consensus 28 ~~GEvhaiM--GPNGsGKSTLa~~i~G~p~Y~ 57 (251)
T COG0396 28 KEGEVHAIM--GPNGSGKSTLAYTIMGHPKYE 57 (251)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHHHhCCCCce
Confidence 569999999 999999999998543345653
No 72
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=89.64 E-value=0.18 Score=52.17 Aligned_cols=21 Identities=24% Similarity=0.110 Sum_probs=19.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|..+.++ |++|||||+|++
T Consensus 34 p~gs~~lI~--G~pGtGKT~l~~ 54 (259)
T TIGR03878 34 PAYSVINIT--GVSDTGKSLMVE 54 (259)
T ss_pred ECCcEEEEE--cCCCCCHHHHHH
Confidence 778889998 999999999998
No 73
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=89.46 E-value=0.17 Score=52.31 Aligned_cols=18 Identities=33% Similarity=0.373 Sum_probs=15.5
Q ss_pred EEEEEeEcCCccchhhhccc
Q psy13077 284 KKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam~ 303 (630)
..+|. ||.||||||||.+
T Consensus 52 h~lf~--GPPG~GKTTLA~I 69 (233)
T PF05496_consen 52 HMLFY--GPPGLGKTTLARI 69 (233)
T ss_dssp EEEEE--SSTTSSHHHHHHH
T ss_pred eEEEE--CCCccchhHHHHH
Confidence 46677 9999999999985
No 74
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.43 E-value=0.33 Score=48.51 Aligned_cols=21 Identities=33% Similarity=0.339 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||..
T Consensus 29 ~~Ge~~~l~--G~nGsGKSTLl~ 49 (233)
T cd03258 29 PKGEIFGII--GRSGAGKSTLIR 49 (233)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 75
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=89.15 E-value=0.23 Score=49.11 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=19.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|+.+.++ |+||||||+|++
T Consensus 17 ~~g~v~~I~--G~~GsGKT~l~~ 37 (226)
T cd01393 17 PTGRITEIF--GEFGSGKTQLCL 37 (226)
T ss_pred cCCcEEEEe--CCCCCChhHHHH
Confidence 679999999 999999999988
No 76
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=89.14 E-value=0.34 Score=49.81 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=18.7
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+..-+. |+||||||||.-+
T Consensus 35 ~~Ge~~~i~--G~nGsGKSTLl~~ 56 (265)
T PRK10575 35 PAGKVTGLI--GHNGSGKSTLLKM 56 (265)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468888888 9999999999763
No 77
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=89.12 E-value=0.25 Score=48.83 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. ||||||||||.-+
T Consensus 28 ~~G~~~~l~--G~nGsGKSTLl~~ 49 (218)
T cd03255 28 EKGEFVAIV--GPSGSGKSTLLNI 49 (218)
T ss_pred cCCCEEEEE--cCCCCCHHHHHHH
Confidence 568888888 9999999999763
No 78
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.09 E-value=0.25 Score=49.53 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.1
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. ||||||||||..+
T Consensus 25 ~~Ge~~~i~--G~nGsGKSTLl~~ 46 (241)
T cd03256 25 NPGEFVALI--GPSGAGKSTLLRC 46 (241)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999763
No 79
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=89.06 E-value=0.33 Score=51.20 Aligned_cols=37 Identities=32% Similarity=0.506 Sum_probs=25.3
Q ss_pred CCCCEEEEEeEcCCccchhhhccc----CCCCCCCeeEEeeccE
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGDDI 319 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~----~p~~pgwk~~lIGDDi 319 (630)
.+|++.-+. |.||||||||+-+ .++..| ++..=|.|+
T Consensus 37 ~~ge~~glV--GESG~GKSTlgr~i~~L~~pt~G-~i~f~g~~i 77 (268)
T COG4608 37 KEGETLGLV--GESGCGKSTLGRLILGLEEPTSG-EILFEGKDI 77 (268)
T ss_pred cCCCEEEEE--ecCCCCHHHHHHHHHcCcCCCCc-eEEEcCcch
Confidence 678887777 9999999999862 233345 355555553
No 80
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=89.00 E-value=0.35 Score=51.86 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. |+||||||||+.+
T Consensus 39 ~~Ge~~~Iv--G~sGsGKSTLl~~ 60 (327)
T PRK11308 39 ERGKTLAVV--GESGCGKSTLARL 60 (327)
T ss_pred CCCCEEEEE--CCCCCcHHHHHHH
Confidence 568888888 9999999999763
No 81
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=89.00 E-value=0.26 Score=48.72 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. ||||||||||.-+
T Consensus 27 ~~Ge~~~i~--G~nGsGKSTLl~~ 48 (216)
T TIGR00960 27 TKGEMVFLV--GHSGAGKSTFLKL 48 (216)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999763
No 82
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=88.98 E-value=0.26 Score=48.42 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. ||||||||||.-+
T Consensus 24 ~~Ge~~~i~--G~nGsGKSTLl~~ 45 (205)
T cd03226 24 YAGEIIALT--GKNGAGKTTLAKI 45 (205)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999653
No 83
>PRK03846 adenylylsulfate kinase; Provisional
Probab=88.94 E-value=0.25 Score=48.64 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=18.7
Q ss_pred CCCCCEEEEEeEcCCccchhhhccc
Q psy13077 279 NPEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 279 ~p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
.+.|....++ |+||||||||+.+
T Consensus 21 ~~~~~~i~i~--G~~GsGKSTla~~ 43 (198)
T PRK03846 21 GHKGVVLWFT--GLSGSGKSTVAGA 43 (198)
T ss_pred CCCCEEEEEE--CCCCCCHHHHHHH
Confidence 3567777777 9999999999873
No 84
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=88.93 E-value=0.24 Score=56.13 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
++|+...++ ||||||||||..
T Consensus 30 ~~GEiv~L~--G~SGsGKSTLLr 50 (504)
T TIGR03238 30 PSSSLLFLC--GSSGDGKSEILA 50 (504)
T ss_pred cCCCEEEEE--CCCCCCHHHHHh
Confidence 679999999 999999999954
No 85
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=88.89 E-value=0.25 Score=50.35 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|....+. |++||||||||+
T Consensus 22 ~~g~~~~i~--G~~G~GKTtl~~ 42 (230)
T PRK08533 22 PAGSLILIE--GDESTGKSILSQ 42 (230)
T ss_pred CCCcEEEEE--CCCCCCHHHHHH
Confidence 678888888 999999999975
No 86
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.87 E-value=0.37 Score=48.73 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=18.7
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. |+||||||||.-+
T Consensus 27 ~~Ge~~~i~--G~nGsGKSTLl~~ 48 (241)
T PRK14250 27 EGGAIYTIV--GPSGAGKSTLIKL 48 (241)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468888888 9999999999763
No 87
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=88.77 E-value=0.27 Score=49.37 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. ||||||||||.-+
T Consensus 26 ~~Ge~~~l~--G~nGsGKSTLl~~ 47 (243)
T TIGR02315 26 NPGEFVAII--GPSGAGKSTLLRC 47 (243)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999663
No 88
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=88.75 E-value=0.27 Score=48.38 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 25 ~~G~~~~l~--G~nGsGKSTLl~ 45 (211)
T cd03225 25 KKGEFVLIV--GPNGSGKSTLLR 45 (211)
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999975
No 89
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=88.69 E-value=0.38 Score=55.15 Aligned_cols=36 Identities=33% Similarity=0.409 Sum_probs=26.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc----cCCCCCCCeeEEeecc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGDD 318 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam----~~p~~pgwk~~lIGDD 318 (630)
..|++.=+. |.|||||||||- |.++..| .+.+.|.|
T Consensus 315 ~~GE~lglV--GeSGsGKSTlar~i~gL~~P~~G-~i~~~g~~ 354 (539)
T COG1123 315 REGETLGLV--GESGSGKSTLARILAGLLPPSSG-SIIFDGQD 354 (539)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCc-eEEEeCcc
Confidence 679887777 999999999985 3444445 45666666
No 90
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=88.67 E-value=0.24 Score=43.97 Aligned_cols=15 Identities=40% Similarity=0.496 Sum_probs=12.8
Q ss_pred EEEeEcCCccchhhhcc
Q psy13077 286 YIAAAFPSACGKTNLAM 302 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam 302 (630)
++. ||+|||||+|+-
T Consensus 2 ll~--G~~G~GKT~l~~ 16 (132)
T PF00004_consen 2 LLH--GPPGTGKTTLAR 16 (132)
T ss_dssp EEE--SSTTSSHHHHHH
T ss_pred EEE--CcCCCCeeHHHH
Confidence 455 999999999976
No 91
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=88.60 E-value=0.17 Score=48.73 Aligned_cols=12 Identities=33% Similarity=0.268 Sum_probs=11.3
Q ss_pred cCCccchhhhcc
Q psy13077 291 FPSACGKTNLAM 302 (630)
Q Consensus 291 fpSg~GKTtLam 302 (630)
||||||||||+-
T Consensus 2 G~sGsGKSTla~ 13 (163)
T PRK11545 2 GVSGSGKSAVAS 13 (163)
T ss_pred CCCCCcHHHHHH
Confidence 899999999986
No 92
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=88.58 E-value=0.39 Score=48.33 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||.-
T Consensus 27 ~~Ge~~~l~--G~nGsGKSTLl~ 47 (241)
T PRK10895 27 NSGEIVGLL--GPNGAGKTTTFY 47 (241)
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999966
No 93
>PRK08084 DNA replication initiation factor; Provisional
Probab=88.58 E-value=0.27 Score=50.06 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=17.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.+...|++ ||+|||||+|+.
T Consensus 43 ~~~~~l~l~--Gp~G~GKThLl~ 63 (235)
T PRK08084 43 EHSGYIYLW--SREGAGRSHLLH 63 (235)
T ss_pred CCCCeEEEE--CCCCCCHHHHHH
Confidence 334567888 999999999987
No 94
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.57 E-value=0.41 Score=47.11 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+...+. ||||||||||..
T Consensus 22 ~~Ge~~~l~--G~nGsGKSTLl~ 42 (211)
T cd03298 22 AQGEITAIV--GPSGSGKSTLLN 42 (211)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 95
>PLN02348 phosphoribulokinase
Probab=88.54 E-value=0.26 Score=54.51 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=17.9
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
++...+.-||+|||||||||.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~ 67 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMR 67 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 456888888999999999875
No 96
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=88.53 E-value=0.23 Score=55.83 Aligned_cols=22 Identities=45% Similarity=0.683 Sum_probs=19.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|++.-+. ||||||||||+.+
T Consensus 359 ~~G~~vaIv--G~SGsGKSTLl~l 380 (529)
T TIGR02868 359 PPGERVAIL--GPSGSGKSTLLML 380 (529)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 679999898 9999999999875
No 97
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=88.51 E-value=0.19 Score=47.45 Aligned_cols=13 Identities=23% Similarity=0.235 Sum_probs=12.0
Q ss_pred cCCccchhhhccc
Q psy13077 291 FPSACGKTNLAML 303 (630)
Q Consensus 291 fpSg~GKTtLam~ 303 (630)
|||||||||+|..
T Consensus 5 G~~GsGKSTla~~ 17 (163)
T TIGR01313 5 GVAGSGKSTIASA 17 (163)
T ss_pred CCCCCCHHHHHHH
Confidence 9999999999884
No 98
>PRK07667 uridine kinase; Provisional
Probab=88.44 E-value=0.29 Score=48.24 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=17.4
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
++...++-+|+|||||||||.
T Consensus 15 ~~~~iIgI~G~~gsGKStla~ 35 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVA 35 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 445777888999999999876
No 99
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=88.39 E-value=0.3 Score=48.43 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=19.0
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. ||||||||||..+
T Consensus 29 ~~Ge~~~i~--G~nGsGKSTLl~~ 50 (228)
T cd03257 29 KKGETLGLV--GESGSGKSTLARA 50 (228)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 579888888 9999999999763
No 100
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=88.37 E-value=0.24 Score=43.77 Aligned_cols=13 Identities=31% Similarity=0.281 Sum_probs=11.9
Q ss_pred EcCCccchhhhcc
Q psy13077 290 AFPSACGKTNLAM 302 (630)
Q Consensus 290 afpSg~GKTtLam 302 (630)
.|++|+||||||.
T Consensus 4 ~G~~GsGKtTia~ 16 (129)
T PF13238_consen 4 SGIPGSGKTTIAK 16 (129)
T ss_dssp EESTTSSHHHHHH
T ss_pred ECCCCCCHHHHHH
Confidence 3999999999987
No 101
>PRK00889 adenylylsulfate kinase; Provisional
Probab=88.36 E-value=0.28 Score=46.91 Aligned_cols=37 Identities=30% Similarity=0.385 Sum_probs=23.9
Q ss_pred CCCCEEEEEeEcCCccchhhhcccCC-C--CCCCeeEEeecc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAMLNP-T--LPGYKVECVGDD 318 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~~p-~--~pgwk~~lIGDD 318 (630)
+.|+...+. |+|||||||+|..-- . ..|+++.+|.-|
T Consensus 2 ~~g~~i~~~--G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 2 QRGVTVWFT--GLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred CCCeEEEEE--CCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 457777777 999999999986211 0 135556555433
No 102
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=88.30 E-value=0.31 Score=47.27 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=18.0
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+..-+. ||||||||||.-
T Consensus 16 ~~Ge~~~i~--G~nGsGKSTLl~ 36 (190)
T TIGR01166 16 ERGEVLALL--GANGAGKSTLLL 36 (190)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888788 999999999964
No 103
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=88.30 E-value=0.31 Score=48.57 Aligned_cols=21 Identities=38% Similarity=0.705 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+...+. |+||||||||.-
T Consensus 24 ~~Ge~~~i~--G~nGsGKSTLl~ 44 (227)
T cd03260 24 PKGEITALI--GPSGCGKSTLLR 44 (227)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 104
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=88.29 E-value=0.31 Score=48.09 Aligned_cols=22 Identities=27% Similarity=0.304 Sum_probs=19.1
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. ||||||||||..+
T Consensus 23 ~~Ge~~~l~--G~nGsGKSTLl~~ 44 (213)
T cd03235 23 KPGEFLAIV--GPNGAGKSTLLKA 44 (213)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999763
No 105
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=88.28 E-value=0.22 Score=48.64 Aligned_cols=16 Identities=44% Similarity=0.546 Sum_probs=13.3
Q ss_pred EEeEcCCccchhhhcc
Q psy13077 287 IAAAFPSACGKTNLAM 302 (630)
Q Consensus 287 f~~afpSg~GKTtLam 302 (630)
++-+|+|||||||||.
T Consensus 2 i~i~G~sgsGKttla~ 17 (179)
T cd02028 2 VGIAGPSGSGKTTFAK 17 (179)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3445999999999987
No 106
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=88.24 E-value=0.27 Score=53.14 Aligned_cols=21 Identities=43% Similarity=0.597 Sum_probs=19.9
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|+.+.++ ||+||||||||+
T Consensus 53 p~G~iteI~--Gp~GsGKTtLal 73 (325)
T cd00983 53 PKGRIIEIY--GPESSGKTTLAL 73 (325)
T ss_pred cCCeEEEEE--CCCCCCHHHHHH
Confidence 889999999 999999999998
No 107
>PRK06762 hypothetical protein; Provisional
Probab=88.24 E-value=0.27 Score=46.48 Aligned_cols=16 Identities=38% Similarity=0.291 Sum_probs=13.4
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
..++ |+|||||||+|.
T Consensus 5 i~i~--G~~GsGKST~A~ 20 (166)
T PRK06762 5 IIIR--GNSGSGKTTIAK 20 (166)
T ss_pred EEEE--CCCCCCHHHHHH
Confidence 4455 999999999987
No 108
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=88.23 E-value=0.38 Score=52.57 Aligned_cols=21 Identities=24% Similarity=0.173 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||..
T Consensus 17 ~~Gei~~l~--G~sGsGKSTLLr 37 (363)
T TIGR01186 17 AKGEIFVIM--GLSGSGKSTTVR 37 (363)
T ss_pred cCCCEEEEE--CCCCChHHHHHH
Confidence 579888888 999999999965
No 109
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=88.22 E-value=0.42 Score=47.89 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. |+||||||||..
T Consensus 26 ~~Ge~~~i~--G~nGsGKSTLl~ 46 (237)
T cd03252 26 KPGEVVGIV--GRSGSGKSTLTK 46 (237)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 110
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.19 E-value=0.31 Score=47.93 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=18.7
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+...+. |+||||||||..+
T Consensus 24 ~~G~~~~i~--G~nGsGKSTLl~~ 45 (210)
T cd03269 24 EKGEIFGLL--GPNGAGKTTTIRM 45 (210)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 468888888 9999999999763
No 111
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.17 E-value=0.31 Score=48.91 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||.-
T Consensus 24 ~~Ge~~~l~--G~nGsGKSTLl~ 44 (235)
T cd03261 24 RRGEILAII--GPSGSGKSTLLR 44 (235)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 112
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=88.16 E-value=0.21 Score=50.53 Aligned_cols=16 Identities=38% Similarity=0.291 Sum_probs=13.3
Q ss_pred EEeEcCCccchhhhcc
Q psy13077 287 IAAAFPSACGKTNLAM 302 (630)
Q Consensus 287 f~~afpSg~GKTtLam 302 (630)
+.-+|+|||||||||.
T Consensus 2 igI~G~sGSGKTTla~ 17 (220)
T cd02025 2 IGIAGSVAVGKSTTAR 17 (220)
T ss_pred EEeeCCCCCCHHHHHH
Confidence 3456999999999985
No 113
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=88.10 E-value=0.32 Score=47.74 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. ||||||||||.-+
T Consensus 24 ~~G~~~~l~--G~nGsGKSTLl~~ 45 (213)
T cd03262 24 KKGEVVVII--GPSGSGKSTLLRC 45 (213)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999653
No 114
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=88.02 E-value=0.31 Score=52.85 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=17.8
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 30 ~~Ge~~~ll--GpsGsGKSTLLr 50 (351)
T PRK11432 30 KQGTMVTLL--GPSGCGKTTVLR 50 (351)
T ss_pred cCCCEEEEE--CCCCCcHHHHHH
Confidence 568877788 999999999954
No 115
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=88.00 E-value=0.31 Score=48.21 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=18.7
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+..-+. ||||||||||..+
T Consensus 24 ~~Ge~~~i~--G~nGsGKSTLl~~ 45 (222)
T cd03224 24 PEGEIVALL--GRNGAGKTTLLKT 45 (222)
T ss_pred cCCeEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999763
No 116
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=87.99 E-value=0.23 Score=49.51 Aligned_cols=16 Identities=31% Similarity=0.335 Sum_probs=13.5
Q ss_pred EEeEcCCccchhhhcc
Q psy13077 287 IAAAFPSACGKTNLAM 302 (630)
Q Consensus 287 f~~afpSg~GKTtLam 302 (630)
++-+|+|||||||||.
T Consensus 2 i~i~G~sgsGKTtla~ 17 (187)
T cd02024 2 VGISGVTNSGKTTLAK 17 (187)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3456999999999987
No 117
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=87.94 E-value=0.33 Score=47.71 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+..-+. |+||||||||.-
T Consensus 25 ~~G~~~~i~--G~nGsGKSTLl~ 45 (214)
T cd03292 25 SAGEFVFLV--GPSGAGKSTLLK 45 (214)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999975
No 118
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=87.91 E-value=0.32 Score=52.78 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=17.9
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||--
T Consensus 28 ~~Ge~~~l~--GpsGsGKSTLLr 48 (353)
T TIGR03265 28 KKGEFVCLL--GPSGCGKTTLLR 48 (353)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999954
No 119
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=87.88 E-value=0.44 Score=51.72 Aligned_cols=21 Identities=43% Similarity=0.517 Sum_probs=18.0
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
.+|+..-+. ||||||||||.-
T Consensus 26 ~~Ge~~~ll--GpsGsGKSTLLr 46 (353)
T PRK10851 26 PSGQMVALL--GPSGSGKTTLLR 46 (353)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888787 999999999965
No 120
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=87.85 E-value=0.3 Score=52.71 Aligned_cols=21 Identities=43% Similarity=0.585 Sum_probs=19.7
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|+.+.++ ||+|||||||++
T Consensus 53 p~G~iteI~--G~~GsGKTtLaL 73 (321)
T TIGR02012 53 PRGRIIEIY--GPESSGKTTLAL 73 (321)
T ss_pred cCCeEEEEE--CCCCCCHHHHHH
Confidence 789999999 999999999987
No 121
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=87.84 E-value=0.23 Score=48.48 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=24.6
Q ss_pred ccCcccccch-hccccCCCCCEEEEEeEcCCccchhhhcc
Q psy13077 264 REGWLAEHML-ILGITNPEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 264 ~eGwLaeHm~-i~gv~~p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|.++.-+. .+...-..|+...|. ||+|||||||..
T Consensus 6 ~~g~~~~~~~~~l~~~v~~g~~i~I~--G~tGSGKTTll~ 43 (186)
T cd01130 6 AQGTFSPLQAAYLWLAVEARKNILIS--GGTGSGKTTLLN 43 (186)
T ss_pred HcCCCCHHHHHHHHHHHhCCCEEEEE--CCCCCCHHHHHH
Confidence 4566665553 222222457777777 999999999854
No 122
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=87.78 E-value=0.33 Score=48.88 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=19.0
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+...+. ||||||||||.-+
T Consensus 26 ~~Ge~~~i~--G~nGsGKSTLl~~ 47 (242)
T PRK11124 26 PQGETLVLL--GPSGAGKSSLLRV 47 (242)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999753
No 123
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.75 E-value=0.34 Score=49.09 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.2
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. |+||||||||..+
T Consensus 27 ~~Ge~~~i~--G~nGsGKSTLl~~ 48 (250)
T PRK14247 27 PDNTITALM--GPSGSGKSTLLRV 48 (250)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999774
No 124
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=87.72 E-value=0.34 Score=47.38 Aligned_cols=21 Identities=29% Similarity=0.252 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 22 ~~Ge~~~i~--G~nGsGKSTLl~ 42 (206)
T TIGR03608 22 EKGKMYAII--GESGSGKSTLLN 42 (206)
T ss_pred eCCcEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999966
No 125
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=87.70 E-value=0.32 Score=53.26 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=17.8
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||.-
T Consensus 38 ~~Ge~~~Ll--GpsGsGKSTLLr 58 (375)
T PRK09452 38 NNGEFLTLL--GPSGCGKTTVLR 58 (375)
T ss_pred eCCCEEEEE--CCCCCcHHHHHH
Confidence 468877788 999999999965
No 126
>PRK09354 recA recombinase A; Provisional
Probab=87.67 E-value=0.31 Score=53.20 Aligned_cols=21 Identities=43% Similarity=0.591 Sum_probs=19.9
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|+.+.++ ||+|||||||++
T Consensus 58 p~G~IteI~--G~~GsGKTtLal 78 (349)
T PRK09354 58 PRGRIVEIY--GPESSGKTTLAL 78 (349)
T ss_pred cCCeEEEEE--CCCCCCHHHHHH
Confidence 789999999 999999999998
No 127
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=87.64 E-value=0.24 Score=52.52 Aligned_cols=21 Identities=43% Similarity=0.619 Sum_probs=19.9
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|..+-|| ||.||||||||+
T Consensus 58 ~~g~ItEiy--G~~gsGKT~lal 78 (279)
T COG0468 58 PRGRITEIY--GPESSGKTTLAL 78 (279)
T ss_pred ccceEEEEe--cCCCcchhhHHH
Confidence 779999999 999999999998
No 128
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=87.63 E-value=0.3 Score=46.59 Aligned_cols=17 Identities=18% Similarity=0.014 Sum_probs=13.8
Q ss_pred EEEeEcCCccchhhhcc
Q psy13077 286 YIAAAFPSACGKTNLAM 302 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam 302 (630)
+++..|++|||||||+.
T Consensus 5 ii~i~G~~GsGKsTl~~ 21 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCE 21 (188)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 44445999999999985
No 129
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=87.62 E-value=0.35 Score=48.45 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||.-
T Consensus 24 ~~Ge~~~i~--G~nGsGKSTLl~ 44 (243)
T TIGR01978 24 KKGEIHAIM--GPNGSGKSTLSK 44 (243)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 130
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.61 E-value=0.34 Score=48.14 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. ||||||||||..+
T Consensus 28 ~~G~~~~i~--G~nGsGKSTLl~~ 49 (220)
T cd03293 28 EEGEFVALV--GPSGCGKSTLLRI 49 (220)
T ss_pred eCCcEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999763
No 131
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=87.58 E-value=0.36 Score=47.44 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||.-
T Consensus 24 ~~G~~~~i~--G~nGsGKSTLl~ 44 (208)
T cd03268 24 KKGEIYGFL--GPNGAGKTTTMK 44 (208)
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999975
No 132
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=87.52 E-value=0.33 Score=51.07 Aligned_cols=21 Identities=14% Similarity=0.025 Sum_probs=19.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|..+.++ |++|||||+|++
T Consensus 93 ~~g~i~ei~--G~~g~GKT~l~~ 113 (310)
T TIGR02236 93 ETQAITEVF--GEFGSGKTQICH 113 (310)
T ss_pred CCCeEEEEE--CCCCCCHHHHHH
Confidence 668889999 999999999987
No 133
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.51 E-value=0.37 Score=48.00 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||..
T Consensus 27 ~~G~~~~i~--G~nGsGKSTLl~ 47 (229)
T cd03254 27 KPGETVAIV--GPTGAGKTTLIN 47 (229)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 678888888 999999999976
No 134
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=87.51 E-value=0.48 Score=50.95 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.1
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+..-+. |+||||||||+.+
T Consensus 45 ~~Ge~~~lv--G~sGsGKSTLlk~ 66 (331)
T PRK15079 45 YEGETLGVV--GESGCGKSTFARA 66 (331)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 579888888 9999999999763
No 135
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=87.48 E-value=0.51 Score=50.98 Aligned_cols=21 Identities=33% Similarity=0.219 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||..
T Consensus 21 ~~Gei~~l~--G~nGsGKSTLl~ 41 (354)
T TIGR02142 21 PGQGVTAIF--GRSGSGKTTLIR 41 (354)
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 136
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=87.44 E-value=0.3 Score=40.46 Aligned_cols=13 Identities=31% Similarity=0.289 Sum_probs=11.9
Q ss_pred EcCCccchhhhcc
Q psy13077 290 AFPSACGKTNLAM 302 (630)
Q Consensus 290 afpSg~GKTtLam 302 (630)
.|+|||||||++-
T Consensus 5 ~G~~gsGKst~~~ 17 (69)
T cd02019 5 TGGSGSGKSTVAK 17 (69)
T ss_pred ECCCCCCHHHHHH
Confidence 4999999999987
No 137
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=87.43 E-value=0.36 Score=48.29 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. ||||||||||.-+
T Consensus 24 ~~Ge~~~l~--G~nGsGKSTLl~~ 45 (236)
T cd03219 24 RPGEIHGLI--GPNGAGKTTLFNL 45 (236)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999763
No 138
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=87.43 E-value=0.54 Score=48.00 Aligned_cols=22 Identities=32% Similarity=0.158 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+...+. |+||||||||..+
T Consensus 30 ~~Ge~~~i~--G~nGsGKSTLl~~ 51 (258)
T PRK11701 30 YPGEVLGIV--GESGSGKTTLLNA 51 (258)
T ss_pred eCCCEEEEE--CCCCCCHHHHHHH
Confidence 468888888 9999999999763
No 139
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=87.39 E-value=0.38 Score=48.04 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.1
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+...+. |+||||||||.-+
T Consensus 24 ~~Ge~~~l~--G~nGsGKSTLl~~ 45 (230)
T TIGR03410 24 PKGEVTCVL--GRNGVGKTTLLKT 45 (230)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999763
No 140
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=87.37 E-value=0.39 Score=46.28 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=19.1
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. |+||||||||..+
T Consensus 26 ~~Ge~~~i~--G~nGsGKStLl~~ 47 (178)
T cd03247 26 KQGEKIALL--GRSGSGKSTLLQL 47 (178)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 579888888 9999999999763
No 141
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=87.31 E-value=0.36 Score=52.44 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=17.7
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 28 ~~Ge~~~ll--G~sGsGKSTLLr 48 (356)
T PRK11650 28 ADGEFIVLV--GPSGCGKSTLLR 48 (356)
T ss_pred cCCCEEEEE--CCCCCcHHHHHH
Confidence 568877777 999999999965
No 142
>PLN02165 adenylate isopentenyltransferase
Probab=87.27 E-value=0.41 Score=52.01 Aligned_cols=30 Identities=17% Similarity=0.108 Sum_probs=21.7
Q ss_pred cchhccccCCCCCEEEEEeEcCCccchhhhcc
Q psy13077 271 HMLILGITNPEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 271 Hm~i~gv~~p~G~~~~f~~afpSg~GKTtLam 302 (630)
|-+.-.+.++.|....++ ||+|||||+||.
T Consensus 32 ~~~~~~~~~~~g~iivIi--GPTGSGKStLA~ 61 (334)
T PLN02165 32 MTSVAMEQNCKDKVVVIM--GATGSGKSRLSV 61 (334)
T ss_pred ccccccccCCCCCEEEEE--CCCCCcHHHHHH
Confidence 333333456678766666 999999999997
No 143
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=87.20 E-value=0.39 Score=45.91 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. |+||||||||..
T Consensus 24 ~~Ge~~~l~--G~nGsGKSTLl~ 44 (163)
T cd03216 24 RRGEVHALL--GENGAGKSTLMK 44 (163)
T ss_pred eCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999966
No 144
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.20 E-value=0.38 Score=47.42 Aligned_cols=21 Identities=38% Similarity=0.506 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||+|||||.-
T Consensus 24 ~~Ge~~~i~--G~nGsGKSTLl~ 44 (213)
T cd03259 24 EPGEFLALL--GPSGCGKTTLLR 44 (213)
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999975
No 145
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=87.19 E-value=0.38 Score=48.30 Aligned_cols=21 Identities=33% Similarity=0.330 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||.-
T Consensus 33 ~~Ge~~~l~--G~nGsGKSTLl~ 53 (233)
T PRK11629 33 GEGEMMAIV--GSSGSGKSTLLH 53 (233)
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999975
No 146
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=87.15 E-value=0.4 Score=45.98 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. |+||||||||.-
T Consensus 25 ~~Ge~~~i~--G~nGsGKSTLl~ 45 (166)
T cd03223 25 KPGDRLLIT--GPSGTGKSSLFR 45 (166)
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 147
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=87.14 E-value=0.4 Score=47.40 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=18.7
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. |+||||||||..+
T Consensus 29 ~~Ge~~~i~--G~nGsGKSTLl~~ 50 (218)
T cd03266 29 KPGEVTGLL--GPNGAGKTTTLRM 50 (218)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999763
No 148
>PRK09087 hypothetical protein; Validated
Probab=87.13 E-value=0.29 Score=49.77 Aligned_cols=20 Identities=35% Similarity=0.405 Sum_probs=16.5
Q ss_pred CCEEEEEeEcCCccchhhhccc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam~ 303 (630)
+...|+. ||||||||+|+.+
T Consensus 44 ~~~l~l~--G~~GsGKThLl~~ 63 (226)
T PRK09087 44 SPVVVLA--GPVGSGKTHLASI 63 (226)
T ss_pred CCeEEEE--CCCCCCHHHHHHH
Confidence 3457888 9999999999873
No 149
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=87.10 E-value=0.39 Score=47.95 Aligned_cols=21 Identities=24% Similarity=0.129 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
++|+...+. ||||||||||.-
T Consensus 11 ~~Ge~~~l~--G~NGsGKSTLlk 31 (213)
T PRK15177 11 GYHEHIGIL--AAPGSGKTTLTR 31 (213)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 150
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=87.02 E-value=0.4 Score=47.46 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=18.7
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. ||||||||||..+
T Consensus 29 ~~G~~~~i~--G~nGsGKSTLl~~ 50 (221)
T TIGR02211 29 GKGEIVAIV--GSSGSGKSTLLHL 50 (221)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999753
No 151
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=87.01 E-value=0.41 Score=47.34 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
++|+..-+. |+||||||||.-
T Consensus 26 ~~Ge~~~i~--G~nGsGKSTLl~ 46 (207)
T PRK13539 26 AAGEALVLT--GPNGSGKTTLLR 46 (207)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 152
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.01 E-value=0.41 Score=47.53 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+...+. |+||||||||..+
T Consensus 24 ~~Ge~~~i~--G~nGsGKSTLl~~ 45 (220)
T cd03265 24 RRGEIFGLL--GPNGAGKTTTIKM 45 (220)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 468888888 9999999999763
No 153
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=86.96 E-value=0.41 Score=47.94 Aligned_cols=21 Identities=43% Similarity=0.662 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||.-
T Consensus 31 ~~Ge~~~i~--G~nGsGKSTLl~ 51 (225)
T PRK10247 31 RAGEFKLIT--GPSGCGKSTLLK 51 (225)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999975
No 154
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=86.90 E-value=0.43 Score=45.84 Aligned_cols=21 Identities=38% Similarity=0.445 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 26 ~~Ge~~~i~--G~nGsGKStLl~ 46 (173)
T cd03246 26 EPGESLAII--GPSGSGKSTLAR 46 (173)
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 155
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=86.84 E-value=0.39 Score=47.81 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|..+.++ |+||+|||+|++
T Consensus 21 ~~g~i~~i~--G~~GsGKT~l~~ 41 (225)
T PRK09361 21 ERGTITQIY--GPPGSGKTNICL 41 (225)
T ss_pred CCCeEEEEE--CCCCCCHHHHHH
Confidence 678889999 999999999988
No 156
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.84 E-value=0.42 Score=45.90 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. |+||||||||.-
T Consensus 24 ~~Ge~~~i~--G~nGsGKStLl~ 44 (173)
T cd03230 24 EKGEIYGLL--GPNGAGKTTLIK 44 (173)
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 157
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=86.76 E-value=0.38 Score=51.18 Aligned_cols=20 Identities=30% Similarity=0.155 Sum_probs=16.5
Q ss_pred CEEEEEeEcCCccchhhhcc
Q psy13077 283 QKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam 302 (630)
....++-+|+|||||||||.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar 80 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTAR 80 (290)
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 34677778999999999984
No 158
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=86.71 E-value=0.43 Score=47.19 Aligned_cols=21 Identities=29% Similarity=0.265 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||.-
T Consensus 28 ~~G~~~~i~--G~nGsGKSTLl~ 48 (220)
T cd03245 28 RAGEKVAII--GRVGSGKSTLLK 48 (220)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 159
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=86.65 E-value=0.33 Score=43.39 Aligned_cols=16 Identities=38% Similarity=0.461 Sum_probs=13.9
Q ss_pred EEEeEcCCccchhhhccc
Q psy13077 286 YIAAAFPSACGKTNLAML 303 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam~ 303 (630)
++. |+||||||+||..
T Consensus 2 ~i~--G~~G~GKS~l~~~ 17 (107)
T PF00910_consen 2 WIY--GPPGIGKSTLAKE 17 (107)
T ss_pred EEE--CCCCCCHHHHHHH
Confidence 566 9999999999883
No 160
>KOG0060|consensus
Probab=86.64 E-value=0.39 Score=55.38 Aligned_cols=21 Identities=52% Similarity=0.814 Sum_probs=19.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|+|+..+++ ||||||||+|--
T Consensus 459 ~~g~~LLIt--G~sG~GKtSLlR 479 (659)
T KOG0060|consen 459 PSGQNLLIT--GPSGCGKTSLLR 479 (659)
T ss_pred cCCCeEEEE--CCCCCchhHHHH
Confidence 789999999 999999999943
No 161
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=86.63 E-value=0.93 Score=44.61 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=17.9
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 23 ~~Ge~~~l~--G~nGsGKSTLl~ 43 (177)
T cd03222 23 KEGEVIGIV--GPNGTGKTTAVK 43 (177)
T ss_pred CCCCEEEEE--CCCCChHHHHHH
Confidence 568888888 999999999854
No 162
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=86.62 E-value=0.45 Score=46.70 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=19.3
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. ||||||||||..+
T Consensus 29 ~~G~~~~i~--G~nG~GKSTLl~~ 50 (204)
T cd03250 29 PKGELVAIV--GPVGSGKSSLLSA 50 (204)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 679899999 9999999999763
No 163
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=86.59 E-value=0.46 Score=45.48 Aligned_cols=54 Identities=19% Similarity=0.211 Sum_probs=32.8
Q ss_pred EEEEeEcCCccchhhhcc-cCCCCCCCeeEEeeccEEEEEECCC----ccEEEeccCCCee
Q psy13077 285 KYIAAAFPSACGKTNLAM-LNPTLPGYKVECVGDDIAWMKFDKE----GVLRAINPENGFF 340 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam-~~p~~pgwk~~lIGDDiaW~~~~~d----G~l~a~NpE~G~f 340 (630)
..+. |++|+|||||.. +-....|+++.+|-+|.+.+.+|.. .....+...+||-
T Consensus 3 ~~l~--G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~~~d~~~~~~~~~~v~~l~~GCi 61 (158)
T cd03112 3 TVLT--GFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCI 61 (158)
T ss_pred EEEE--ECCCCCHHHHHHHHHhcccCCcEEEEecCCCccchhHHHHhCCCceEEEeCCCEe
Confidence 4555 999999999754 1122347788888888776654421 0112455566664
No 164
>PRK06217 hypothetical protein; Validated
Probab=86.54 E-value=0.38 Score=46.72 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=20.9
Q ss_pred EEEEeEcCCccchhhhcccCCCCCCCeeEEeecc-EEE
Q psy13077 285 KYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDD-IAW 321 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam~~p~~pgwk~~lIGDD-iaW 321 (630)
..+. |+|||||||||-.-...-| ...|.-| +.|
T Consensus 4 I~i~--G~~GsGKSTla~~L~~~l~--~~~~~~D~~~~ 37 (183)
T PRK06217 4 IHIT--GASGSGTTTLGAALAERLD--IPHLDTDDYFW 37 (183)
T ss_pred EEEE--CCCCCCHHHHHHHHHHHcC--CcEEEcCceee
Confidence 4455 9999999999873221113 4556555 567
No 165
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.48 E-value=0.46 Score=45.83 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. |+||||||||.-
T Consensus 24 ~~G~~~~i~--G~nGsGKSTLl~ 44 (178)
T cd03229 24 EAGEIVALL--GPSGSGKSTLLR 44 (178)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 578888888 999999999965
No 166
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=86.38 E-value=0.47 Score=45.85 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+...+. |+||||||||.-
T Consensus 23 ~~G~~~~l~--G~nGsGKStLl~ 43 (180)
T cd03214 23 EAGEIVGIL--GPNGAGKSTLLK 43 (180)
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999965
No 167
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=86.35 E-value=0.46 Score=48.79 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 25 ~~Ge~~~i~--G~nGsGKSTLl~ 45 (255)
T PRK11248 25 ESGELLVVL--GPSGCGKTTLLN 45 (255)
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999865
No 168
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=86.30 E-value=0.45 Score=48.97 Aligned_cols=18 Identities=22% Similarity=0.134 Sum_probs=14.9
Q ss_pred CEEEEEeEcCCccchhhhcc
Q psy13077 283 QKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam 302 (630)
...+|. ||+||||||||-
T Consensus 43 ~~vll~--GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFK--GNPGTGKTTVAR 60 (261)
T ss_pred ceEEEE--cCCCCCHHHHHH
Confidence 345666 999999999995
No 169
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=86.30 E-value=0.48 Score=44.50 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. |+||||||||.-
T Consensus 24 ~~Ge~~~i~--G~nGsGKStLl~ 44 (144)
T cd03221 24 NPGDRIGLV--GRNGAGKSTLLK 44 (144)
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999975
No 170
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.29 E-value=0.45 Score=47.89 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. ||||||||||..+
T Consensus 26 ~~Ge~~~i~--G~nGsGKSTLl~~ 47 (239)
T cd03296 26 PSGELVALL--GPSGSGKTTLLRL 47 (239)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999763
No 171
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=86.27 E-value=0.47 Score=46.96 Aligned_cols=22 Identities=18% Similarity=0.092 Sum_probs=18.7
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. ||||||||||..+
T Consensus 26 ~~Ge~~~i~--G~nGsGKSTLl~~ 47 (220)
T cd03263 26 YKGEIFGLL--GHNGAGKTTTLKM 47 (220)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999763
No 172
>PRK09183 transposase/IS protein; Provisional
Probab=86.26 E-value=0.41 Score=49.73 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..++. ||+|||||+||..
T Consensus 100 ~~~~~v~l~--Gp~GtGKThLa~a 121 (259)
T PRK09183 100 ERNENIVLL--GPSGVGKTHLAIA 121 (259)
T ss_pred hcCCeEEEE--eCCCCCHHHHHHH
Confidence 346778888 9999999999874
No 173
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=86.24 E-value=0.42 Score=50.70 Aligned_cols=21 Identities=14% Similarity=-0.001 Sum_probs=19.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|..+.++ |++|||||+|++
T Consensus 100 ~~g~vtei~--G~~GsGKT~l~~ 120 (317)
T PRK04301 100 ETQSITEFY--GEFGSGKTQICH 120 (317)
T ss_pred cCCcEEEEE--CCCCCCHhHHHH
Confidence 678899999 999999999988
No 174
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=86.24 E-value=0.44 Score=47.52 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|+...+. |+||||||+|+.
T Consensus 18 ~~G~~~~i~--G~~G~GKT~l~~ 38 (229)
T TIGR03881 18 PRGFFVAVT--GEPGTGKTIFCL 38 (229)
T ss_pred cCCeEEEEE--CCCCCChHHHHH
Confidence 678888888 999999999986
No 175
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=86.24 E-value=0.41 Score=46.07 Aligned_cols=55 Identities=29% Similarity=0.356 Sum_probs=30.6
Q ss_pred EEEEEeEcCCccchhhhcccCCCCCCCeeEEeeccEEEEEECCCccEEEeccCCCeeEeccCCCCCCcHHHHhhc
Q psy13077 284 KKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDIAWMKFDKEGVLRAINPENGFFGVAPGTSNKTNPIAMKTV 358 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam~~p~~pgwk~~lIGDDiaW~~~~~dG~l~a~NpE~G~fgk~~g~s~~~~P~i~~ai 358 (630)
+..+. |++|||||||+- .|.|.++-. ..-. ++++...+ --+||- .-.||..+.+|
T Consensus 3 rimli--G~~g~GKTTL~q----------~L~~~~~~~----~KTq--~i~~~~~~-IDTPGE-yiE~~~~y~aL 57 (143)
T PF10662_consen 3 RIMLI--GPSGSGKTTLAQ----------ALNGEEIRY----KKTQ--AIEYYDNT-IDTPGE-YIENPRFYHAL 57 (143)
T ss_pred eEEEE--CCCCCCHHHHHH----------HHcCCCCCc----Cccc--eeEecccE-EECChh-heeCHHHHHHH
Confidence 45556 999999999976 344444422 1222 34433322 333333 23477777776
No 176
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=86.22 E-value=0.46 Score=49.06 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+...+. ||||||||||.-
T Consensus 36 ~~Ge~~~I~--G~NGsGKSTLlk 56 (257)
T PRK11247 36 PAGQFVAVV--GRSGCGKSTLLR 56 (257)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999975
No 177
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=86.21 E-value=0.46 Score=47.36 Aligned_cols=21 Identities=24% Similarity=0.263 Sum_probs=18.1
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+...+. |+||||||||..
T Consensus 24 ~~Ge~~~l~--G~nGsGKSTLl~ 44 (232)
T cd03218 24 KQGEIVGLL--GPNGAGKTTTFY 44 (232)
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 178
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=86.17 E-value=0.49 Score=46.47 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
.+|+..-+. |+||||||||.-
T Consensus 25 ~~Ge~~~l~--G~nGsGKSTLl~ 45 (200)
T PRK13540 25 PAGGLLHLK--GSNGAGKTTLLK 45 (200)
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999865
No 179
>PRK10908 cell division protein FtsE; Provisional
Probab=86.11 E-value=0.49 Score=47.07 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+..-+. ||||||||||.-
T Consensus 26 ~~Ge~~~i~--G~nGsGKSTLl~ 46 (222)
T PRK10908 26 RPGEMAFLT--GHSGAGKSTLLK 46 (222)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999975
No 180
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=86.08 E-value=0.63 Score=48.93 Aligned_cols=21 Identities=29% Similarity=0.241 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 17 ~~Ge~~~l~--G~NGaGKSTLl~ 37 (302)
T TIGR01188 17 REGEVFGFL--GPNGAGKTTTIR 37 (302)
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 181
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=86.05 E-value=0.45 Score=48.29 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=19.1
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|....+. |++|||||+||+
T Consensus 19 ~~gs~~lI~--G~pGsGKT~la~ 39 (237)
T TIGR03877 19 PERNVVLLS--GGPGTGKSIFSQ 39 (237)
T ss_pred cCCeEEEEE--cCCCCCHHHHHH
Confidence 678888888 999999999997
No 182
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=86.03 E-value=0.48 Score=48.08 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. |+||||||||..
T Consensus 24 ~~Ge~~~i~--G~nGsGKSTLl~ 44 (252)
T TIGR03005 24 AAGEKVALI--GPSGSGKSTILR 44 (252)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999975
No 183
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=86.02 E-value=0.47 Score=51.26 Aligned_cols=21 Identities=33% Similarity=0.230 Sum_probs=18.1
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 22 ~~Ge~~~l~--G~nGsGKSTLl~ 42 (352)
T PRK11144 22 PAQGITAIF--GRSGAGKTSLIN 42 (352)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 184
>PRK14527 adenylate kinase; Provisional
Probab=85.91 E-value=0.49 Score=46.18 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=26.1
Q ss_pred hHhhhcCCHHHHHHHHHHHHHHHHHh-----h-CCCccHHHHHHHHH
Q psy13077 583 LEELFSFDKSFWEQEVQDLQRYFNEQ-----L-GADLPTAIQAEIDA 623 (630)
Q Consensus 583 ~~~~~~~d~~~w~~e~~~l~~~f~~~-----~-~~~lP~ei~~~l~~ 623 (630)
.++.+.-.-+.|.+++..+.++|.++ + ++.-++++.+++..
T Consensus 142 ~~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~ 188 (191)
T PRK14527 142 NEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILK 188 (191)
T ss_pred CHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHH
Confidence 34556666688888888888888753 1 33445555555443
No 185
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=85.89 E-value=0.51 Score=46.47 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. |+||||||||..
T Consensus 24 ~~Ge~~~l~--G~nGsGKSTLl~ 44 (213)
T cd03301 24 ADGEFVVLL--GPSGCGKTTTLR 44 (213)
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999976
No 186
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.87 E-value=0.49 Score=46.76 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. |+||||||||.-+
T Consensus 31 ~~Ge~~~i~--G~nGsGKSTLl~~ 52 (202)
T cd03233 31 KPGEMVLVL--GRPGSGCSTLLKA 52 (202)
T ss_pred CCCcEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999763
No 187
>PRK06620 hypothetical protein; Validated
Probab=85.85 E-value=0.49 Score=47.76 Aligned_cols=22 Identities=36% Similarity=0.388 Sum_probs=17.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
|.....|+. ||+|||||+|+.+
T Consensus 42 ~~~~~l~l~--Gp~G~GKThLl~a 63 (214)
T PRK06620 42 PYKFTLLIK--GPSSSGKTYLTKI 63 (214)
T ss_pred CCcceEEEE--CCCCCCHHHHHHH
Confidence 433468999 9999999999874
No 188
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=85.80 E-value=0.51 Score=47.77 Aligned_cols=21 Identities=38% Similarity=0.629 Sum_probs=18.7
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. |+||||||||.-
T Consensus 25 ~~Ge~~~i~--G~nGsGKSTLl~ 45 (247)
T TIGR00972 25 PKNQVTALI--GPSGCGKSTLLR 45 (247)
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 579888888 999999999975
No 189
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=85.79 E-value=0.49 Score=49.65 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=17.2
Q ss_pred CCCCEEEEEeEcCCccchhhhc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLA 301 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLa 301 (630)
++|+..-+. ||.|||||||-
T Consensus 26 ~~G~i~~ii--GpNG~GKSTLL 45 (258)
T COG1120 26 PKGEITGIL--GPNGSGKSTLL 45 (258)
T ss_pred cCCcEEEEE--CCCCCCHHHHH
Confidence 678877777 99999999994
No 190
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=85.79 E-value=0.5 Score=47.10 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.0
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+..-+. |+||||||||..+
T Consensus 34 ~~Ge~~~i~--G~nGsGKSTLl~~ 55 (228)
T PRK10584 34 KRGETIALI--GESGSGKSTLLAI 55 (228)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468888888 9999999999764
No 191
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=85.73 E-value=0.53 Score=44.69 Aligned_cols=21 Identities=24% Similarity=0.159 Sum_probs=17.9
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. |++|||||||+-
T Consensus 20 ~~~~~i~l~--G~lGaGKTtl~~ 40 (133)
T TIGR00150 20 DFGTVVLLK--GDLGAGKTTLVQ 40 (133)
T ss_pred CCCCEEEEE--cCCCCCHHHHHH
Confidence 557777777 999999999976
No 192
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=85.71 E-value=0.5 Score=47.55 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. |+||||||||.-
T Consensus 9 ~~Ge~~~i~--G~nGsGKSTLl~ 29 (230)
T TIGR01184 9 QQGEFISLI--GHSGCGKSTLLN 29 (230)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999865
No 193
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=85.67 E-value=0.49 Score=51.56 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=18.1
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||..
T Consensus 27 ~~Ge~~~l~--G~nGsGKSTLL~ 47 (369)
T PRK11000 27 HEGEFVVFV--GPSGCGKSTLLR 47 (369)
T ss_pred cCCCEEEEE--CCCCCcHHHHHH
Confidence 568888888 999999999965
No 194
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=85.67 E-value=0.5 Score=48.24 Aligned_cols=22 Identities=36% Similarity=0.600 Sum_probs=19.2
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. |+||||||||..+
T Consensus 36 ~~Ge~~~l~--G~nGsGKSTLl~~ 57 (259)
T PRK14274 36 PENEVTAII--GPSGCGKSTFIKT 57 (259)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 569888888 9999999999764
No 195
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=85.62 E-value=0.5 Score=47.95 Aligned_cols=21 Identities=29% Similarity=0.148 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. |+||||||||.-
T Consensus 27 ~~Ge~~~i~--G~nGsGKSTLl~ 47 (253)
T TIGR02323 27 YPGEVLGIV--GESGSGKSTLLG 47 (253)
T ss_pred eCCcEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999865
No 196
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=85.61 E-value=0.53 Score=46.34 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. |+||||||||.-
T Consensus 25 ~~Ge~~~l~--G~nGsGKSTLl~ 45 (204)
T PRK13538 25 NAGELVQIE--GPNGAGKTSLLR 45 (204)
T ss_pred CCCcEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 197
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=85.58 E-value=0.53 Score=46.76 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+...+. |+||||||||.-
T Consensus 35 ~~Ge~~~i~--G~nGsGKSTLl~ 55 (214)
T PRK13543 35 DAGEALLVQ--GDNGAGKTTLLR 55 (214)
T ss_pred CCCCEEEEE--cCCCCCHHHHHH
Confidence 468888888 999999999965
No 198
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=85.57 E-value=0.54 Score=46.81 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=18.7
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||.-
T Consensus 38 ~~Ge~~~i~--G~nGsGKSTLl~ 58 (226)
T cd03248 38 HPGEVTALV--GPSGSGKSTVVA 58 (226)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999976
No 199
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.57 E-value=0.53 Score=47.48 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||.-
T Consensus 25 ~~Ge~~~i~--G~nGsGKSTLl~ 45 (242)
T cd03295 25 AKGEFLVLI--GPSGSGKTTTMK 45 (242)
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 200
>PRK06893 DNA replication initiation factor; Validated
Probab=85.39 E-value=0.41 Score=48.49 Aligned_cols=18 Identities=28% Similarity=0.165 Sum_probs=15.8
Q ss_pred EEEEEeEcCCccchhhhccc
Q psy13077 284 KKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam~ 303 (630)
..|+. ||||||||+|+.+
T Consensus 41 ~l~l~--G~~G~GKThL~~a 58 (229)
T PRK06893 41 FFYIW--GGKSSGKSHLLKA 58 (229)
T ss_pred eEEEE--CCCCCCHHHHHHH
Confidence 56888 9999999999884
No 201
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=85.36 E-value=0.55 Score=47.65 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+..-+. ||||||||||..+
T Consensus 28 ~~Ge~~~l~--G~nGsGKSTLl~~ 49 (253)
T PRK14267 28 PQNGVFALM--GPSGCGKSTLLRT 49 (253)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468888888 9999999999764
No 202
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=85.34 E-value=0.53 Score=51.34 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=17.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||--
T Consensus 29 ~~Ge~~~ll--GpsGsGKSTLLr 49 (362)
T TIGR03258 29 EAGELLALI--GKSGCGKTTLLR 49 (362)
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 568777777 999999999854
No 203
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=85.31 E-value=0.55 Score=45.92 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.1
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. |++|||||||.-
T Consensus 24 ~~Ge~~~l~--G~nGsGKSTLl~ 44 (195)
T PRK13541 24 LPSAITYIK--GANGCGKSSLLR 44 (195)
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999975
No 204
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=85.29 E-value=0.44 Score=47.47 Aligned_cols=42 Identities=2% Similarity=-0.005 Sum_probs=27.3
Q ss_pred ceeccCCccCCCCCCCChHHHHHHHHHHHHhhccCCCcEEEEe
Q psy13077 480 KVIMHDPFAMRPFFGYNFGDYLKHWLSMEQRTNAKLPKVFHVN 522 (630)
Q Consensus 480 g~~~~dP~a~~PF~~y~~g~Y~~~wl~lg~~~~~~~pkif~VN 522 (630)
..+.-|+...+ .....+..+......|-+.+++....++.+.
T Consensus 117 ~~vVIDsls~l-~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~ 158 (226)
T PF06745_consen 117 DRVVIDSLSAL-LLYDDPEELRRFLRALIKFLKSRGVTTLLTS 158 (226)
T ss_dssp SEEEEETHHHH-TTSSSGGGHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CEEEEECHHHH-hhcCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 45556888776 6667777766666666676666665555555
No 205
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.21 E-value=0.59 Score=44.82 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||+|||||||.-
T Consensus 26 ~~G~~~~l~--G~nGsGKstLl~ 46 (171)
T cd03228 26 KPGEKVAIV--GPSGSGKSTLLK 46 (171)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 206
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=85.19 E-value=0.55 Score=47.46 Aligned_cols=21 Identities=38% Similarity=0.381 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. |+||||||||..
T Consensus 27 ~~Ge~~~i~--G~nGsGKSTLl~ 47 (250)
T PRK11264 27 KPGEVVAII--GPSGSGKTTLLR 47 (250)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999975
No 207
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=85.18 E-value=0.43 Score=42.66 Aligned_cols=19 Identities=32% Similarity=0.322 Sum_probs=12.9
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
+...++. |++|||||+++.
T Consensus 4 ~~~~~i~--G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVIS--GPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEE--E-TTSSHHHHHH
T ss_pred CcccEEE--cCCCCCHHHHHH
Confidence 3445666 999999999977
No 208
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=85.18 E-value=0.55 Score=47.71 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. |+||||||||.-+
T Consensus 30 ~~Ge~~~i~--G~nGsGKSTLl~~ 51 (253)
T PRK14261 30 PKNRVTALI--GPSGCGKSTLLRC 51 (253)
T ss_pred CCCcEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999764
No 209
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=85.14 E-value=0.46 Score=54.18 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=19.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|++.-+. |+||||||||+.+
T Consensus 374 ~~G~~vaIv--G~SGsGKSTL~~l 395 (588)
T PRK11174 374 PAGQRIALV--GPSGAGKTSLLNA 395 (588)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 679999888 9999999999875
No 210
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=85.05 E-value=0.58 Score=45.30 Aligned_cols=22 Identities=32% Similarity=0.167 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. |+||||||||.-+
T Consensus 24 ~~G~~~~i~--G~nGsGKSTLl~~ 45 (182)
T cd03215 24 RAGEIVGIA--GLVGNGQTELAEA 45 (182)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999763
No 211
>PRK05439 pantothenate kinase; Provisional
Probab=85.04 E-value=0.58 Score=50.30 Aligned_cols=22 Identities=27% Similarity=0.129 Sum_probs=18.6
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.+....++.||+|||||||||.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~ 104 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTAR 104 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHH
Confidence 3566788888999999999986
No 212
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=85.03 E-value=0.51 Score=53.02 Aligned_cols=50 Identities=26% Similarity=0.268 Sum_probs=33.6
Q ss_pred eeehhhhhhhhhccCc----ccccchhccccCCCCCEEEEEeEcCCccchhhhcc
Q psy13077 252 CFALRIGSTIAKREGW----LAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 252 ~~alrias~~a~~eGw----LaeHm~i~gv~~p~G~~~~f~~afpSg~GKTtLam 302 (630)
.+.-|+-.+..|---| |+.|..-.+ .+.+-+..++..+|+||||||||+.
T Consensus 177 ~~~~~~~~~ylPl~~w~~~~i~~h~~~~~-~~~~~~PlIIGIsG~qGSGKSTLa~ 230 (460)
T PLN03046 177 PQKARIYHYYIPVFIWCEDQIAEHRSKFK-DGDDIPPLVIGFSAPQGCGKTTLVF 230 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCEEEEEECCCCCCHHHHHH
Confidence 4456677777777777 777875321 1111145777778999999999975
No 213
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=85.02 E-value=0.58 Score=47.59 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. |+||||||||.-
T Consensus 31 ~~Ge~~~i~--G~nGsGKSTLl~ 51 (254)
T PRK14273 31 LKNSITALI--GPSGCGKSTFLR 51 (254)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888898 999999999964
No 214
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=85.01 E-value=0.57 Score=47.94 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=19.1
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. ||||||||||.-+
T Consensus 37 ~~Ge~~~i~--G~nGsGKSTLl~~ 58 (260)
T PRK10744 37 AKNQVTAFI--GPSGCGKSTLLRT 58 (260)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999764
No 215
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=85.00 E-value=0.55 Score=50.28 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+..-+. |+||||||||+.
T Consensus 31 ~~Ge~~~lv--G~sGsGKSTL~~ 51 (326)
T PRK11022 31 KQGEVVGIV--GESGSGKSVSSL 51 (326)
T ss_pred CCCCEEEEE--CCCCChHHHHHH
Confidence 678887777 999999999976
No 216
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=84.98 E-value=0.57 Score=47.43 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+...+. |+||||||||.-+
T Consensus 31 ~~Ge~~~i~--G~nGsGKSTLl~~ 52 (252)
T CHL00131 31 NKGEIHAIM--GPNGSGKSTLSKV 52 (252)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 468888888 9999999999653
No 217
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=84.94 E-value=0.52 Score=46.08 Aligned_cols=17 Identities=47% Similarity=0.454 Sum_probs=13.5
Q ss_pred EEeEcCCccchhhhccc
Q psy13077 287 IAAAFPSACGKTNLAML 303 (630)
Q Consensus 287 f~~afpSg~GKTtLam~ 303 (630)
|.-+||||||||.||.+
T Consensus 6 ~ll~GpsGvGKT~la~~ 22 (171)
T PF07724_consen 6 FLLAGPSGVGKTELAKA 22 (171)
T ss_dssp EEEESSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 33349999999999874
No 218
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=84.93 E-value=0.58 Score=47.35 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=18.7
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+...+. ||||||||||..+
T Consensus 29 ~~Ge~~~i~--G~nGsGKSTLl~~ 50 (252)
T PRK14239 29 YPNEITALI--GPSGSGKSTLLRS 50 (252)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 468888888 9999999999763
No 219
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=84.93 E-value=0.56 Score=49.05 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.8
Q ss_pred ccCCCCCEEEEEeEcCCccchhhhcc
Q psy13077 277 ITNPEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 277 v~~p~G~~~~f~~afpSg~GKTtLam 302 (630)
++=|.|...-++ |+||||||||..
T Consensus 16 ~~ip~g~~~~vt--GvSGsGKStL~~ 39 (261)
T cd03271 16 VDIPLGVLTCVT--GVSGSGKSSLIN 39 (261)
T ss_pred eeccCCcEEEEE--CCCCCchHHHHH
Confidence 444889888888 999999999986
No 220
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=84.85 E-value=0.44 Score=44.62 Aligned_cols=13 Identities=38% Similarity=0.498 Sum_probs=11.7
Q ss_pred EcCCccchhhhcc
Q psy13077 290 AFPSACGKTNLAM 302 (630)
Q Consensus 290 afpSg~GKTtLam 302 (630)
.||||||||||+.
T Consensus 5 ~GpsGsGKstl~~ 17 (137)
T cd00071 5 SGPSGVGKSTLLK 17 (137)
T ss_pred ECCCCCCHHHHHH
Confidence 4999999999976
No 221
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=84.85 E-value=0.61 Score=46.24 Aligned_cols=21 Identities=38% Similarity=0.669 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. |+||||||||.-
T Consensus 25 ~~Ge~~~i~--G~nGsGKSTLl~ 45 (218)
T cd03290 25 PTGQLTMIV--GQVGCGKSSLLL 45 (218)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999964
No 222
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=84.83 E-value=0.58 Score=47.51 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. |+||||||||..+
T Consensus 28 ~~Ge~~~i~--G~nGsGKSTLl~~ 49 (252)
T PRK14256 28 PENSVTAII--GPSGCGKSTVLRS 49 (252)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 569888888 9999999999763
No 223
>PLN02318 phosphoribulokinase/uridine kinase
Probab=84.80 E-value=0.6 Score=54.47 Aligned_cols=21 Identities=29% Similarity=0.241 Sum_probs=18.0
Q ss_pred CEEEEEeEcCCccchhhhccc
Q psy13077 283 QKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam~ 303 (630)
+...++-+|||||||||||..
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~ 84 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEK 84 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHH
Confidence 467888889999999999873
No 224
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=84.78 E-value=0.6 Score=48.11 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=19.2
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. ||||||||||..+
T Consensus 33 ~~Ge~~~I~--G~nGsGKSTLl~~ 54 (269)
T PRK13648 33 PKGQWTSIV--GHNGSGKSTIAKL 54 (269)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999764
No 225
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=84.77 E-value=0.58 Score=50.09 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+..-+. |+||||||||..+
T Consensus 31 ~~Ge~~~iv--G~sGsGKSTLl~~ 52 (330)
T PRK15093 31 TEGEIRGLV--GESGSGKSLIAKA 52 (330)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888788 9999999999763
No 226
>PRK14737 gmk guanylate kinase; Provisional
Probab=84.73 E-value=0.58 Score=46.24 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=14.9
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
+...++. ||||+|||||+-
T Consensus 4 ~~~ivl~--GpsG~GK~tl~~ 22 (186)
T PRK14737 4 PKLFIIS--SVAGGGKSTIIQ 22 (186)
T ss_pred CeEEEEE--CCCCCCHHHHHH
Confidence 4455555 999999999975
No 227
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=84.67 E-value=0.59 Score=47.70 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=18.7
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+..-+. |+||||||||..+
T Consensus 28 ~~Ge~~~i~--G~nGsGKSTLl~~ 49 (258)
T PRK14241 28 EPRSVTAFI--GPSGCGKSTVLRT 49 (258)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 468888888 9999999999763
No 228
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=84.64 E-value=0.6 Score=48.32 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||.-
T Consensus 31 ~~Ge~~~l~--G~nGsGKSTLl~ 51 (280)
T PRK13649 31 EDGSYTAFI--GHTGSGKSTIMQ 51 (280)
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 229
>PTZ00035 Rad51 protein; Provisional
Probab=84.63 E-value=0.55 Score=50.77 Aligned_cols=21 Identities=24% Similarity=0.138 Sum_probs=19.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|..+.++ |+||||||+|++
T Consensus 116 ~~G~iteI~--G~~GsGKT~l~~ 136 (337)
T PTZ00035 116 ETGSITELF--GEFRTGKTQLCH 136 (337)
T ss_pred CCCeEEEEE--CCCCCchhHHHH
Confidence 678899999 999999999987
No 230
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=84.58 E-value=0.61 Score=48.09 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. |+||||||||.-
T Consensus 25 ~~Ge~~~i~--G~nGsGKSTLl~ 45 (271)
T PRK13638 25 SLSPVTGLV--GANGCGKSTLFM 45 (271)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999965
No 231
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=84.56 E-value=0.55 Score=46.42 Aligned_cols=18 Identities=39% Similarity=0.285 Sum_probs=13.8
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
..+.-+|+||||||||..
T Consensus 7 ~ii~ivG~sgsGKTTLi~ 24 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLK 24 (173)
T ss_pred eEEEEECCCCChHHHHHH
Confidence 345555999999999844
No 232
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.50 E-value=0.64 Score=46.44 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||.-
T Consensus 26 ~~Ge~~~i~--G~nGsGKSTLl~ 46 (234)
T cd03251 26 PAGETVALV--GPSGSGKSTLVN 46 (234)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999975
No 233
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=84.49 E-value=0.58 Score=50.25 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+..-+. |+||||||||..+
T Consensus 40 ~~Ge~~~iv--G~sGsGKSTL~~~ 61 (330)
T PRK09473 40 RAGETLGIV--GESGSGKSQTAFA 61 (330)
T ss_pred cCCCEEEEE--CCCCchHHHHHHH
Confidence 568888888 9999999999763
No 234
>PLN02796 D-glycerate 3-kinase
Probab=84.48 E-value=0.63 Score=50.82 Aligned_cols=19 Identities=37% Similarity=0.649 Sum_probs=15.8
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
..+++-+|+||||||||+.
T Consensus 100 pliIGI~G~sGSGKSTLa~ 118 (347)
T PLN02796 100 PLVIGISAPQGCGKTTLVF 118 (347)
T ss_pred CEEEEEECCCCCcHHHHHH
Confidence 3666667999999999976
No 235
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=84.46 E-value=0.59 Score=46.68 Aligned_cols=22 Identities=36% Similarity=0.243 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+..-+. ||||||||||.-+
T Consensus 31 ~~Ge~~~l~--G~nGsGKSTLlk~ 52 (226)
T cd03234 31 ESGQVMAIL--GSSGSGKTTLLDA 52 (226)
T ss_pred cCCeEEEEE--CCCCCCHHHHHHH
Confidence 568887788 9999999999763
No 236
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=84.45 E-value=0.64 Score=47.73 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+..-+. ||||||||||.-+
T Consensus 23 ~~Ge~~~i~--G~NGsGKSTLlk~ 44 (246)
T cd03237 23 SESEVIGIL--GPNGIGKTTFIKM 44 (246)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 358888888 9999999999653
No 237
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=84.43 E-value=0.62 Score=47.26 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=18.7
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. |+||||||||.-+
T Consensus 30 ~~Ge~~~i~--G~nGsGKSTLl~~ 51 (253)
T PRK14242 30 EQNQVTALI--GPSGCGKSTFLRC 51 (253)
T ss_pred eCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999753
No 238
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=84.42 E-value=0.65 Score=46.13 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+..-+. |+||||||||.-+
T Consensus 32 ~~Ge~~~l~--G~nGsGKSTLl~~ 53 (224)
T TIGR02324 32 NAGECVALS--GPSGAGKSTLLKS 53 (224)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999764
No 239
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=84.42 E-value=0.52 Score=43.71 Aligned_cols=14 Identities=21% Similarity=0.159 Sum_probs=12.5
Q ss_pred EcCCccchhhhccc
Q psy13077 290 AFPSACGKTNLAML 303 (630)
Q Consensus 290 afpSg~GKTtLam~ 303 (630)
.|++||||||+|..
T Consensus 5 ~G~~GsGKST~a~~ 18 (150)
T cd02021 5 MGVSGSGKSTVGKA 18 (150)
T ss_pred EcCCCCCHHHHHHH
Confidence 39999999999884
No 240
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=84.41 E-value=0.56 Score=51.07 Aligned_cols=21 Identities=24% Similarity=-0.040 Sum_probs=19.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|..+.++ |++|||||+|++
T Consensus 124 ~~G~ItEI~--G~~GsGKTql~l 144 (344)
T PLN03187 124 ETRCITEAF--GEFRSGKTQLAH 144 (344)
T ss_pred CCCeEEEEe--cCCCCChhHHHH
Confidence 678899999 999999999987
No 241
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=84.41 E-value=0.63 Score=48.07 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. ||||||||||..+
T Consensus 37 ~~Ge~~~l~--G~nGsGKSTLl~~ 58 (269)
T PRK14259 37 PRGKVTALI--GPSGCGKSTVLRS 58 (269)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999763
No 242
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=84.41 E-value=0.66 Score=45.62 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. |+||||||||.-+
T Consensus 32 ~~G~~~~i~--G~nGsGKSTLl~~ 53 (207)
T cd03369 32 KAGEKIGIV--GRTGAGKSTLILA 53 (207)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999763
No 243
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=84.36 E-value=0.65 Score=45.41 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+..-+. ||||||||||.-
T Consensus 24 ~~Ge~~~i~--G~nGsGKSTLl~ 44 (198)
T TIGR01189 24 NAGEALQVT--GPNGIGKTTLLR 44 (198)
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999975
No 244
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=84.36 E-value=0.64 Score=47.05 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+..-+. |+||||||||.-+
T Consensus 27 ~~Ge~~~i~--G~nGsGKSTLl~~ 48 (250)
T PRK14240 27 EENQVTALI--GPSGCGKSTFLRT 48 (250)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468888888 9999999999764
No 245
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=84.36 E-value=0.65 Score=46.74 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=18.7
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+...+. |+||||||||..+
T Consensus 25 ~~Ge~~~l~--G~nGsGKSTLl~~ 46 (240)
T PRK09493 25 DQGEVVVII--GPSGSGKSTLLRC 46 (240)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 468888888 9999999999763
No 246
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=84.36 E-value=0.62 Score=46.72 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=19.0
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. |+||||||||.-+
T Consensus 27 ~~Ge~~~l~--G~nGsGKSTLl~~ 48 (238)
T cd03249 27 PPGKTVALV--GSSGCGKSTVVSL 48 (238)
T ss_pred cCCCEEEEE--eCCCCCHHHHHHH
Confidence 568888888 9999999999763
No 247
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=84.28 E-value=0.65 Score=47.93 Aligned_cols=22 Identities=45% Similarity=0.563 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. ||||||||||.-+
T Consensus 31 ~~Ge~~~i~--G~nGsGKSTLl~~ 52 (269)
T PRK11831 31 PRGKITAIM--GPSGIGKTTLLRL 52 (269)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999753
No 248
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=84.23 E-value=0.5 Score=43.54 Aligned_cols=17 Identities=24% Similarity=0.163 Sum_probs=14.0
Q ss_pred EEEEeEcCCccchhhhccc
Q psy13077 285 KYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam~ 303 (630)
.++. |++||||||||..
T Consensus 2 i~l~--G~~GsGKstla~~ 18 (154)
T cd00464 2 IVLI--GMMGAGKTTVGRL 18 (154)
T ss_pred EEEE--cCCCCCHHHHHHH
Confidence 3455 9999999999973
No 249
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=84.10 E-value=0.66 Score=47.07 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+..-+. |+||||||||..+
T Consensus 29 ~~Ge~~~I~--G~nGsGKSTLl~~ 50 (251)
T PRK14244 29 YKREVTAFI--GPSGCGKSTFLRC 50 (251)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 458888888 9999999999764
No 250
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=84.08 E-value=0.66 Score=47.31 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=19.2
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. |+||||||||..+
T Consensus 27 ~~Ge~~~l~--G~nGsGKSTLl~~ 48 (254)
T PRK10418 27 QRGRVLALV--GGSGSGKSLTCAA 48 (254)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888898 9999999999764
No 251
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=84.05 E-value=0.68 Score=46.41 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+..-+. ||||||||||.-
T Consensus 23 ~~Ge~~~l~--G~nGsGKSTLl~ 43 (232)
T PRK10771 23 ERGERVAIL--GPSGAGKSTLLN 43 (232)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999975
No 252
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=84.04 E-value=0.66 Score=47.81 Aligned_cols=21 Identities=38% Similarity=0.376 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||.-
T Consensus 37 ~~Ge~~~i~--G~NGsGKSTLl~ 57 (267)
T PRK15112 37 REGQTLAII--GENGSGKSTLAK 57 (267)
T ss_pred cCCCEEEEE--cCCCCCHHHHHH
Confidence 568888888 999999999965
No 253
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=84.02 E-value=0.68 Score=46.89 Aligned_cols=22 Identities=41% Similarity=0.424 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+...+. |+||||||||..+
T Consensus 27 ~~Ge~~~i~--G~nGsGKSTLl~~ 48 (250)
T PRK14262 27 FKNQITAII--GPSGCGKTTLLRS 48 (250)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999763
No 254
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=84.01 E-value=0.68 Score=46.13 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=16.4
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.|+...++ ||||||||||.-
T Consensus 24 ~g~~~~lt--GpNg~GKSTllr 43 (199)
T cd03283 24 KKNGILIT--GSNMSGKSTFLR 43 (199)
T ss_pred CCcEEEEE--CCCCCChHHHHH
Confidence 36777777 999999999943
No 255
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=84.00 E-value=0.65 Score=48.43 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=18.7
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+..-+. |+||||||||..+
T Consensus 35 ~~Ge~~~l~--G~nGsGKSTLl~~ 56 (289)
T PRK13645 35 KKNKVTCVI--GTTGSGKSTMIQL 56 (289)
T ss_pred eCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999763
No 256
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=83.95 E-value=0.61 Score=52.65 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|..+.+. |++||||||||+
T Consensus 19 p~g~~~Li~--G~pGsGKT~la~ 39 (484)
T TIGR02655 19 PIGRSTLVS--GTSGTGKTLFSI 39 (484)
T ss_pred CCCeEEEEE--cCCCCCHHHHHH
Confidence 789889999 999999999998
No 257
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=83.94 E-value=0.68 Score=47.79 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||.-
T Consensus 33 ~~Ge~~~l~--G~nGsGKSTLl~ 53 (271)
T PRK13632 33 NEGEYVAIL--GHNGSGKSTISK 53 (271)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999954
No 258
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=83.94 E-value=0.55 Score=44.24 Aligned_cols=20 Identities=25% Similarity=0.228 Sum_probs=12.3
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
+++..++. |++|||||+|..
T Consensus 23 ~~~~~ll~--G~~G~GKT~ll~ 42 (185)
T PF13191_consen 23 SPRNLLLT--GESGSGKTSLLR 42 (185)
T ss_dssp ----EEE---B-TTSSHHHHHH
T ss_pred CCcEEEEE--CCCCCCHHHHHH
Confidence 34556666 999999999976
No 259
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=83.79 E-value=0.52 Score=42.90 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=12.9
Q ss_pred EeEcCCccchhhhcc
Q psy13077 288 AAAFPSACGKTNLAM 302 (630)
Q Consensus 288 ~~afpSg~GKTtLam 302 (630)
+-+|++||||||+|.
T Consensus 3 ~i~G~~GsGKst~a~ 17 (147)
T cd02020 3 AIDGPAGSGKSTVAK 17 (147)
T ss_pred EEECCCCCCHHHHHH
Confidence 445999999999987
No 260
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.77 E-value=0.64 Score=45.78 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=15.7
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.| ...+. ||||||||||..
T Consensus 25 ~g-~~~i~--G~nGsGKSTLl~ 43 (211)
T cd03264 25 PG-MYGLL--GPNGAGKTTLMR 43 (211)
T ss_pred CC-cEEEE--CCCCCCHHHHHH
Confidence 47 66666 999999999975
No 261
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=83.77 E-value=0.69 Score=47.43 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. |+||||||||.-
T Consensus 26 ~~Ge~~~i~--G~nGsGKSTLl~ 46 (258)
T PRK13548 26 RPGEVVAIL--GPNGAGKSTLLR 46 (258)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999975
No 262
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.75 E-value=0.68 Score=45.31 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+..-+. ||||||||||.-+
T Consensus 31 ~~Ge~~~l~--G~nGsGKSTLl~~ 52 (192)
T cd03232 31 KPGTLTALM--GESGAGKTTLLDV 52 (192)
T ss_pred eCCcEEEEE--CCCCCCHHHHHHH
Confidence 468888888 9999999999763
No 263
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=83.73 E-value=0.7 Score=47.27 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+...+. ||||||||||.-+
T Consensus 28 ~~Ge~~~i~--G~nGsGKSTLl~~ 49 (262)
T PRK09984 28 HHGEMVALL--GPSGSGKSTLLRH 49 (262)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 468888888 9999999999764
No 264
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.72 E-value=0.71 Score=47.71 Aligned_cols=21 Identities=33% Similarity=0.256 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||..
T Consensus 48 ~~Ge~~~l~--G~nGsGKSTLl~ 68 (269)
T cd03294 48 REGEIFVIM--GLSGSGKSTLLR 68 (269)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999966
No 265
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=83.67 E-value=0.73 Score=45.60 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. |+||||||||.-
T Consensus 28 ~~Ge~~~i~--G~nGsGKSTLl~ 48 (221)
T cd03244 28 KPGEKVGIV--GRTGSGKSSLLL 48 (221)
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 266
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=83.64 E-value=0.71 Score=48.08 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+...+. ||||||||||.-+
T Consensus 25 ~~Ge~~~l~--G~nGsGKSTLl~~ 46 (272)
T PRK13547 25 EPGRVTALL--GRNGAGKSTLLKA 46 (272)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468888888 9999999999753
No 267
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=83.63 E-value=0.72 Score=47.54 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+...+. |+||||||||..
T Consensus 44 ~~Ge~~~I~--G~nGsGKSTLl~ 64 (267)
T PRK14237 44 EKNKITALI--GPSGSGKSTYLR 64 (267)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999976
No 268
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=83.60 E-value=0.69 Score=46.91 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+...+. |+||||||||.-+
T Consensus 29 ~~Ge~~~l~--G~nGsGKSTLl~~ 50 (255)
T PRK11300 29 REQEIVSLI--GPNGAGKTTVFNC 50 (255)
T ss_pred cCCeEEEEE--CCCCCCHHHHHHH
Confidence 468888888 9999999999663
No 269
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=83.59 E-value=0.73 Score=46.16 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+..-+. |+||||||||.-+
T Consensus 4 ~~Ge~~~l~--G~nGsGKSTLl~~ 25 (223)
T TIGR03771 4 DKGELLGLL--GPNGAGKTTLLRA 25 (223)
T ss_pred CCCcEEEEE--CCCCCCHHHHHHH
Confidence 358888888 9999999999763
No 270
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=83.57 E-value=0.67 Score=52.74 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.4
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|++.-+. |+||||||||.-+
T Consensus 367 ~~G~~~aIv--G~sGsGKSTLl~l 388 (582)
T PRK11176 367 PAGKTVALV--GRSGSGKSTIANL 388 (582)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 679998888 9999999999763
No 271
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=83.54 E-value=0.71 Score=47.07 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. |+||||||||.-
T Consensus 29 ~~Ge~~~l~--G~nGsGKSTLl~ 49 (257)
T PRK10619 29 NAGDVISII--GSSGSGKSTFLR 49 (257)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 578888888 999999999976
No 272
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=83.53 E-value=0.69 Score=48.06 Aligned_cols=20 Identities=40% Similarity=0.610 Sum_probs=18.3
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.|++..++ |++|||||||+.
T Consensus 15 ~Gqr~~I~--G~~G~GKTTLlr 34 (249)
T cd01128 15 KGQRGLIV--APPKAGKTTLLQ 34 (249)
T ss_pred CCCEEEEE--CCCCCCHHHHHH
Confidence 58899999 999999999976
No 273
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=83.53 E-value=0.73 Score=46.44 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=18.7
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+..-+. |+||||||||.-+
T Consensus 25 ~~Ge~~~i~--G~nGsGKSTLl~~ 46 (248)
T PRK09580 25 RPGEVHAIM--GPNGSGKSTLSAT 46 (248)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468888888 9999999999663
No 274
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=83.52 E-value=0.55 Score=42.60 Aligned_cols=15 Identities=40% Similarity=0.607 Sum_probs=12.8
Q ss_pred EEEeEcCCccchhhhcc
Q psy13077 286 YIAAAFPSACGKTNLAM 302 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam 302 (630)
.++ |+||||||||+.
T Consensus 3 ~i~--G~~G~GKT~l~~ 17 (165)
T cd01120 3 LVF--GPTGSGKTTLAL 17 (165)
T ss_pred eEe--CCCCCCHHHHHH
Confidence 455 999999999986
No 275
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=83.50 E-value=0.63 Score=49.89 Aligned_cols=21 Identities=24% Similarity=0.187 Sum_probs=19.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|..+.++ |++|||||+|++
T Consensus 94 ~~G~iteI~--G~~GsGKTql~l 114 (313)
T TIGR02238 94 ESMSITEVF--GEFRCGKTQLSH 114 (313)
T ss_pred cCCeEEEEE--CCCCCCcCHHHH
Confidence 678899999 999999999997
No 276
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=83.49 E-value=0.74 Score=47.33 Aligned_cols=22 Identities=36% Similarity=0.649 Sum_probs=19.0
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+...+. ||||||||||..+
T Consensus 31 ~~Ge~~~i~--G~nGsGKSTLl~~ 52 (265)
T PRK10253 31 PDGHFTAII--GPNGCGKSTLLRT 52 (265)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 468888898 9999999999763
No 277
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=83.47 E-value=0.73 Score=47.35 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. |+||||||||..
T Consensus 35 ~~Ge~~~i~--G~nGsGKSTLl~ 55 (265)
T TIGR02769 35 EEGETVGLL--GRSGCGKSTLAR 55 (265)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999975
No 278
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=83.45 E-value=0.72 Score=47.62 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=19.1
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+...++ |+||||||||..+
T Consensus 36 ~~Ge~~~i~--G~nGsGKSTLl~~ 57 (268)
T PRK10419 36 KSGETVALL--GRSGCGKSTLARL 57 (268)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999764
No 279
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=83.45 E-value=0.74 Score=46.31 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=18.1
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+...+. |+||||||||..
T Consensus 26 ~~Ge~~~l~--G~nGsGKSTLl~ 46 (242)
T TIGR03411 26 DPGELRVII--GPNGAGKTTMMD 46 (242)
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999964
No 280
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=83.40 E-value=0.74 Score=44.49 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=17.3
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|....++ |+|||||||||..
T Consensus 16 ~~~~~i~i~--G~~GsGKstla~~ 37 (184)
T TIGR00455 16 HRGVVIWLT--GLSGSGKSTIANA 37 (184)
T ss_pred CCCeEEEEE--CCCCCCHHHHHHH
Confidence 446666666 9999999999863
No 281
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=83.37 E-value=0.76 Score=46.11 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. ||||+|||||.-+
T Consensus 10 ~~Ge~~~i~--G~nGsGKSTLl~~ 31 (230)
T TIGR02770 10 KRGEVLALV--GESGSGKSLTCLA 31 (230)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999753
No 282
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=83.33 E-value=0.74 Score=46.30 Aligned_cols=21 Identities=24% Similarity=0.148 Sum_probs=19.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|....+. |++|||||+|+.
T Consensus 23 ~~g~~~~i~--G~~GsGKt~l~~ 43 (234)
T PRK06067 23 PFPSLILIE--GDHGTGKSVLSQ 43 (234)
T ss_pred cCCcEEEEE--CCCCCChHHHHH
Confidence 778888888 999999999998
No 283
>PRK04328 hypothetical protein; Provisional
Probab=83.32 E-value=0.72 Score=47.44 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=19.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|...++. |++|||||+|++
T Consensus 21 p~gs~ili~--G~pGsGKT~l~~ 41 (249)
T PRK04328 21 PERNVVLLS--GGPGTGKSIFSQ 41 (249)
T ss_pred cCCcEEEEE--cCCCCCHHHHHH
Confidence 778888888 999999999988
No 284
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=83.32 E-value=0.76 Score=46.62 Aligned_cols=21 Identities=48% Similarity=0.657 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+..-+. |+||||||||.-
T Consensus 28 ~~G~~~~i~--G~nGsGKSTLl~ 48 (251)
T PRK14249 28 PERQITAII--GPSGCGKSTLLR 48 (251)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999966
No 285
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.30 E-value=0.79 Score=43.07 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=18.7
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
++|+...+. |++|+|||||.-
T Consensus 23 ~~g~~~~i~--G~nGsGKStll~ 43 (157)
T cd00267 23 KAGEIVALV--GPNGSGKSTLLR 43 (157)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 578888898 999999999966
No 286
>PRK15453 phosphoribulokinase; Provisional
Probab=83.27 E-value=0.63 Score=49.66 Aligned_cols=18 Identities=28% Similarity=0.253 Sum_probs=14.8
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
..+..+|.|||||||+|.
T Consensus 6 piI~ItG~SGsGKTTva~ 23 (290)
T PRK15453 6 PIIAVTGSSGAGTTTVKR 23 (290)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 455566999999999986
No 287
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=83.25 E-value=0.74 Score=46.23 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+...+. |+||||||||.-
T Consensus 29 ~~Ge~~~i~--G~nGsGKSTLl~ 49 (237)
T PRK11614 29 NQGEIVTLI--GANGAGKTTLLG 49 (237)
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999965
No 288
>PRK05973 replicative DNA helicase; Provisional
Probab=83.24 E-value=0.69 Score=47.89 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=19.1
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+.+.++ |++|||||+|++
T Consensus 62 ~~Gsl~LIa--G~PG~GKT~lal 82 (237)
T PRK05973 62 KPGDLVLLG--ARPGHGKTLLGL 82 (237)
T ss_pred CCCCEEEEE--eCCCCCHHHHHH
Confidence 678888888 999999999998
No 289
>PLN02772 guanylate kinase
Probab=83.24 E-value=1.8 Score=48.14 Aligned_cols=76 Identities=17% Similarity=0.332 Sum_probs=38.5
Q ss_pred CCCCcceEEEEcCCCCeEEEEccccccccccccceeehhhhhhhhh-ccCcccccchhcc--ccCCCCCEEEEEeEcCCc
Q psy13077 218 PCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAK-REGWLAEHMLILG--ITNPEGQKKYIAAAFPSA 294 (630)
Q Consensus 218 pcn~e~~~I~~~~~~r~i~s~Gs~YgGnall~KK~~alrias~~a~-~eGwLaeHm~i~g--v~~p~G~~~~f~~afpSg 294 (630)
||..- ..+++ .+..|++++-|=+-| ----| |.+-.-..+ ++-.|.|--.... +.+..++..+|. ||||
T Consensus 75 ~r~Gh-Sa~v~--~~~rilv~~~~~~~~---~~~w~-l~~~t~~~~~~~~~~~~eV~~~~~~~~~~~~k~iVls--GPSG 145 (398)
T PLN02772 75 PCKGY-SAVVL--NKDRILVIKKGSAPD---DSIWF-LEVDTPFVREQKKLLGTEVVAWSKGVRGNAEKPIVIS--GPSG 145 (398)
T ss_pred CCCcc-eEEEE--CCceEEEEeCCCCCc---cceEE-EEcCCHHHHhhcccccceeeecccCCCCCCCcEEEEE--CCCC
Confidence 44433 34444 344555555443434 11123 444433333 2344554443222 333345555555 9999
Q ss_pred cchhhhcc
Q psy13077 295 CGKTNLAM 302 (630)
Q Consensus 295 ~GKTtLam 302 (630)
+||+||.-
T Consensus 146 vGKsTL~~ 153 (398)
T PLN02772 146 VGKGTLIS 153 (398)
T ss_pred CCHHHHHH
Confidence 99999865
No 290
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=83.16 E-value=0.71 Score=51.15 Aligned_cols=21 Identities=29% Similarity=0.263 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||.-
T Consensus 52 ~~Gei~~Lv--G~NGsGKSTLLr 72 (400)
T PRK10070 52 EEGEIFVIM--GLSGSGKSTMVR 72 (400)
T ss_pred cCCCEEEEE--CCCCchHHHHHH
Confidence 678888888 999999999965
No 291
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=83.16 E-value=0.78 Score=45.14 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. |+||||||||.-
T Consensus 24 ~~Ge~~~i~--G~nGsGKSTLl~ 44 (201)
T cd03231 24 AAGEALQVT--GPNGSGKTTLLR 44 (201)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 292
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=83.15 E-value=0.77 Score=47.46 Aligned_cols=21 Identities=24% Similarity=0.293 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 31 ~~Ge~~~l~--G~nGsGKSTLl~ 51 (272)
T PRK15056 31 PGGSIAALV--GVNGSGKSTLFK 51 (272)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 293
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=83.15 E-value=0.74 Score=46.91 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+-.|+. ||||.|||||--
T Consensus 26 ~~Gef~fl~--GpSGAGKSTllk 46 (223)
T COG2884 26 PKGEFVFLT--GPSGAGKSTLLK 46 (223)
T ss_pred cCceEEEEE--CCCCCCHHHHHH
Confidence 679888888 999999999853
No 294
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=83.06 E-value=0.79 Score=45.17 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=17.0
Q ss_pred CCEEEEEeEcCCccchhhhccc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam~ 303 (630)
+...++. |++|||||+||..
T Consensus 38 ~~~lll~--G~~G~GKT~la~~ 57 (226)
T TIGR03420 38 DRFLYLW--GESGSGKSHLLQA 57 (226)
T ss_pred CCeEEEE--CCCCCCHHHHHHH
Confidence 4568888 9999999999973
No 295
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=83.00 E-value=0.8 Score=45.56 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=18.1
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+..-+. |+||||||||.-
T Consensus 24 ~~Ge~~~i~--G~nGsGKSTLl~ 44 (223)
T TIGR03740 24 PKNSVYGLL--GPNGAGKSTLLK 44 (223)
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999965
No 296
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=83.00 E-value=0.79 Score=46.05 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=15.8
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.|+...|. ||+|||||||.-
T Consensus 22 ~~~~~~i~--GpNGsGKStll~ 41 (243)
T cd03272 22 SPKHNVVV--GRNGSGKSNFFA 41 (243)
T ss_pred CCCcEEEE--CCCCCCHHHHHH
Confidence 45566677 999999999943
No 297
>KOG1970|consensus
Probab=82.99 E-value=0.65 Score=53.38 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=27.3
Q ss_pred hhccCcccccchhccccCCCCCEEEEEeEcCCccchhhhccc
Q psy13077 262 AKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 262 a~~eGwLaeHm~i~gv~~p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
.--+-||- ||+-.. .+-.++..+++ |||||||||+--.
T Consensus 92 ~eVk~WL~-~~~~~~-~~l~~~iLLlt--GPsGcGKSTtvkv 129 (634)
T KOG1970|consen 92 SEVKQWLK-QVAEFT-PKLGSRILLLT--GPSGCGKSTTVKV 129 (634)
T ss_pred HHHHHHHH-HHHHhc-cCCCceEEEEe--CCCCCCchhHHHH
Confidence 34567988 887331 22346789999 9999999998653
No 298
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=82.91 E-value=0.61 Score=44.14 Aligned_cols=30 Identities=23% Similarity=0.238 Sum_probs=19.0
Q ss_pred EEEEeEcCCccchhhhcccCC-CC--CCCeeEEee
Q psy13077 285 KYIAAAFPSACGKTNLAMLNP-TL--PGYKVECVG 316 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam~~p-~~--pgwk~~lIG 316 (630)
.++. |+|||||||||..-- .+ +|+++.++.
T Consensus 2 i~i~--G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 2 IWLT--GLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred EEEE--cCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 3555 999999999987311 11 355555443
No 299
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=82.89 E-value=0.73 Score=53.75 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=19.5
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|++.-+. |+||||||||+-+
T Consensus 477 ~~Ge~vaIv--G~sGsGKSTLlkl 498 (686)
T TIGR03797 477 EPGEFVAIV--GPSGSGKSTLLRL 498 (686)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 679898888 9999999999874
No 300
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=82.89 E-value=0.72 Score=44.34 Aligned_cols=21 Identities=48% Similarity=0.732 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...|+ |+||+||||+++
T Consensus 30 ~~g~l~~i~--g~~g~GKT~~~~ 50 (193)
T PF13481_consen 30 PRGELTLIA--GPPGSGKTTLAL 50 (193)
T ss_dssp -TTSEEEEE--ECSTSSHHHHHH
T ss_pred cCCeEEEEE--eCCCCCHHHHHH
Confidence 568889999 999999999977
No 301
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=82.88 E-value=0.77 Score=49.62 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=18.0
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
++|+..-.. ||||||||||--
T Consensus 26 ~~Ge~vaLl--GpSGaGKsTlLR 46 (345)
T COG1118 26 KSGELVALL--GPSGAGKSTLLR 46 (345)
T ss_pred cCCcEEEEE--CCCCCcHHHHHH
Confidence 689887777 999999999854
No 302
>PRK07429 phosphoribulokinase; Provisional
Probab=82.88 E-value=0.82 Score=49.38 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=17.3
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
++...+.-+|+||||||||+-
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~ 26 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLR 26 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 456777778999999999876
No 303
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=82.78 E-value=0.72 Score=48.44 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=22.4
Q ss_pred CCCEEEEEeEcCCccchhhhcccCC-CC--C-C-CeeEEeecc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAMLNP-TL--P-G-YKVECVGDD 318 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam~~p-~~--p-g-wk~~lIGDD 318 (630)
.++...|. ||+|+||||++..-. .+ . | ++|-+|--|
T Consensus 193 ~~~vi~~v--GptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 193 QGGVIALV--GPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred CCeEEEEE--CCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 45556666 999999999977211 11 1 3 566666544
No 304
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.77 E-value=0.82 Score=46.34 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=19.0
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+..-+. |+||||||||..+
T Consensus 29 ~~Ge~~~l~--G~nGsGKSTLl~~ 50 (252)
T PRK14255 29 NQNEITALI--GPSGCGKSTYLRT 50 (252)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999764
No 305
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.73 E-value=0.8 Score=47.50 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=19.0
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. |+||||||||.-+
T Consensus 44 ~~Ge~~~Ii--G~nGsGKSTLl~~ 65 (274)
T PRK14265 44 PAKKIIAFI--GPSGCGKSTLLRC 65 (274)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999763
No 306
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=82.70 E-value=0.81 Score=47.68 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. |+||||||||.-+
T Consensus 31 ~~Ge~~~I~--G~nGaGKSTLl~~ 52 (282)
T PRK13640 31 PRGSWTALI--GHNGSGKSTISKL 52 (282)
T ss_pred cCCCEEEEE--CCCCCcHHHHHHH
Confidence 568888888 9999999999763
No 307
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.67 E-value=0.82 Score=46.99 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+..-+. |+||||||||.-
T Consensus 45 ~~Ge~~~i~--G~nGsGKSTLl~ 65 (268)
T PRK14248 45 EKHAVTALI--GPSGCGKSTFLR 65 (268)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999964
No 308
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=82.65 E-value=0.82 Score=46.18 Aligned_cols=21 Identities=24% Similarity=0.233 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. |+||||||||.-
T Consensus 45 ~~Ge~~~i~--G~NGsGKSTLl~ 65 (236)
T cd03267 45 EKGEIVGFI--GPNGAGKTTTLK 65 (236)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999964
No 309
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=82.64 E-value=0.84 Score=45.80 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. |+||||||||.-+
T Consensus 46 ~~Ge~~~i~--G~nGsGKSTLl~~ 67 (224)
T cd03220 46 PRGERIGLI--GRNGAGKSTLLRL 67 (224)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999763
No 310
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=82.63 E-value=0.81 Score=47.30 Aligned_cols=22 Identities=32% Similarity=0.532 Sum_probs=19.0
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. |+||||||||.-+
T Consensus 49 ~~Ge~~~I~--G~nGsGKSTLl~~ 70 (272)
T PRK14236 49 PKNRVTAFI--GPSGCGKSTLLRC 70 (272)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468888888 9999999999764
No 311
>PRK14530 adenylate kinase; Provisional
Probab=82.63 E-value=0.76 Score=45.76 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=31.8
Q ss_pred hhhHhhhcCCHHHHHHHHHHHHHHHHHh-----h-CCCccHHHHHHHHHHH
Q psy13077 581 VDLEELFSFDKSFWEQEVQDLQRYFNEQ-----L-GADLPTAIQAEIDALK 625 (630)
Q Consensus 581 ~~~~~~~~~d~~~w~~e~~~l~~~f~~~-----~-~~~lP~ei~~~l~~~~ 625 (630)
-+.++.+..+-..|.++.+.+.++|.++ + +..-++++++.+.+..
T Consensus 161 dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 211 (215)
T PRK14530 161 DDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAI 211 (215)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHH
Confidence 4567778888889999999999999752 1 4445566666655443
No 312
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=82.61 E-value=0.65 Score=46.06 Aligned_cols=17 Identities=29% Similarity=0.216 Sum_probs=14.5
Q ss_pred EEeEcCCccchhhhccc
Q psy13077 287 IAAAFPSACGKTNLAML 303 (630)
Q Consensus 287 f~~afpSg~GKTtLam~ 303 (630)
++-+||+||||||.|-+
T Consensus 3 ItIsG~pGsG~TTva~~ 19 (179)
T COG1102 3 ITISGLPGSGKTTVARE 19 (179)
T ss_pred EEeccCCCCChhHHHHH
Confidence 45679999999999974
No 313
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=82.59 E-value=0.84 Score=46.06 Aligned_cols=21 Identities=33% Similarity=0.445 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+...++ |+||||||||.-
T Consensus 24 ~~Ge~~~l~--G~nGsGKSTLl~ 44 (237)
T TIGR00968 24 PTGSLVALL--GPSGSGKSTLLR 44 (237)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999954
No 314
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.59 E-value=0.83 Score=46.24 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.0
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+..-+. ||||||||||..+
T Consensus 27 ~~Ge~~~i~--G~nGsGKSTLl~~ 48 (249)
T PRK14253 27 PARQVTALI--GPSGCGKSTLLRC 48 (249)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468888888 9999999999763
No 315
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=82.59 E-value=0.81 Score=45.28 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=19.1
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+..-+. ||||||||||..+
T Consensus 22 ~~Ge~~~i~--G~nGsGKSTLl~~ 43 (213)
T TIGR01277 22 ADGEIVAIM--GPSGAGKSTLLNL 43 (213)
T ss_pred eCCcEEEEE--CCCCCCHHHHHHH
Confidence 468888888 9999999999763
No 316
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=82.58 E-value=0.52 Score=47.66 Aligned_cols=46 Identities=20% Similarity=0.130 Sum_probs=28.2
Q ss_pred hhhhhhhhhccCcccccch--hccccCCCCCEEEEEeEcCCccchhhhcc
Q psy13077 255 LRIGSTIAKREGWLAEHML--ILGITNPEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 255 lrias~~a~~eGwLaeHm~--i~gv~~p~G~~~~f~~afpSg~GKTtLam 302 (630)
|+.-|++..+++.++.|.. +....+......|++ |+||+|||.|.+
T Consensus 5 ~tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~--G~~G~GKTHLL~ 52 (219)
T PF00308_consen 5 YTFDNFVVGESNELAYAAAKAIAENPGERYNPLFLY--GPSGLGKTHLLQ 52 (219)
T ss_dssp -SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEE--ESTTSSHHHHHH
T ss_pred CccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEE--CCCCCCHHHHHH
Confidence 3445666666677777664 222112222468888 999999999966
No 317
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.58 E-value=0.85 Score=45.62 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||+|||||||..
T Consensus 25 ~~Ge~~~l~--G~nGsGKSTLl~ 45 (236)
T cd03253 25 PAGKKVAIV--GPSGSGKSTILR 45 (236)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999976
No 318
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=82.57 E-value=0.84 Score=46.88 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.0
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. |+||||||||.-+
T Consensus 28 ~~Ge~~~I~--G~NGsGKSTLl~~ 49 (251)
T PRK09544 28 KPGKILTLL--GPNGAGKSTLVRV 49 (251)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999753
No 319
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=82.49 E-value=0.86 Score=44.73 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=18.1
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+..-+. ||||||||||.-
T Consensus 33 ~~Ge~~~l~--G~nGsGKStLl~ 53 (194)
T cd03213 33 KPGELTAIM--GPSGAGKSTLLN 53 (194)
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999965
No 320
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.45 E-value=0.87 Score=45.73 Aligned_cols=21 Identities=43% Similarity=0.555 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+...+. |+||||||||.-
T Consensus 24 ~~Ge~~~i~--G~nGsGKSTLl~ 44 (232)
T cd03300 24 KEGEFFTLL--GPSGCGKTTLLR 44 (232)
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999965
No 321
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=82.45 E-value=0.8 Score=49.32 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 29 ~~Gei~~ii--G~nGsGKSTLlk 49 (343)
T PRK11153 29 PAGEIFGVI--GASGAGKSTLIR 49 (343)
T ss_pred cCCCEEEEE--CCCCCcHHHHHH
Confidence 568888888 999999999975
No 322
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=82.45 E-value=0.72 Score=47.93 Aligned_cols=17 Identities=35% Similarity=0.370 Sum_probs=14.9
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
..+|+ ||+|||||+||.
T Consensus 32 ~~ll~--Gp~G~GKT~la~ 48 (305)
T TIGR00635 32 HLLLY--GPPGLGKTTLAH 48 (305)
T ss_pred eEEEE--CCCCCCHHHHHH
Confidence 46777 999999999987
No 323
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=82.39 E-value=0.84 Score=47.21 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. |+||||||||.-+
T Consensus 48 ~~Ge~~~I~--G~nGsGKSTLl~~ 69 (271)
T PRK14238 48 HENEVTAII--GPSGCGKSTYIKT 69 (271)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468888888 9999999999763
No 324
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=82.39 E-value=1.2 Score=45.62 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. |+||||||||..
T Consensus 45 ~~Ge~~~i~--G~nGsGKSTLl~ 65 (257)
T cd03288 45 KPGQKVGIC--GRTGSGKSSLSL 65 (257)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999976
No 325
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=82.36 E-value=0.87 Score=47.09 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+..-+. ||||||||||.-
T Consensus 24 ~~Ge~~~Iv--G~nGsGKSTLlk 44 (255)
T cd03236 24 REGQVLGLV--GPNGIGKSTALK 44 (255)
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999965
No 326
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=82.26 E-value=0.9 Score=52.23 Aligned_cols=22 Identities=41% Similarity=0.481 Sum_probs=19.4
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|++.-+. |+||||||||..+
T Consensus 359 ~~G~~~~iv--G~sGsGKSTL~~l 380 (585)
T TIGR01192 359 KAGQTVAIV--GPTGAGKTTLINL 380 (585)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 569999999 9999999999764
No 327
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=82.26 E-value=0.81 Score=51.51 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=19.5
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|++.-+. |+||||||||.-+
T Consensus 346 ~~G~~~~iv--G~sGsGKSTL~~l 367 (529)
T TIGR02857 346 PPGERVALV--GPSGAGKSTLLNL 367 (529)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 679999999 9999999999764
No 328
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=82.26 E-value=0.81 Score=45.75 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=19.0
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...++ |++|||||+|++
T Consensus 11 ~~G~l~lI~--G~~G~GKT~~~~ 31 (242)
T cd00984 11 QPGDLIIIA--ARPSMGKTAFAL 31 (242)
T ss_pred CCCeEEEEE--eCCCCCHHHHHH
Confidence 678888888 999999999987
No 329
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=82.23 E-value=0.92 Score=44.47 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=16.6
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
+++..|+ |+||+|||||.-
T Consensus 35 ~k~~vl~--G~SGvGKSSLiN 53 (161)
T PF03193_consen 35 GKTSVLL--GQSGVGKSSLIN 53 (161)
T ss_dssp TSEEEEE--CSTTSSHHHHHH
T ss_pred CCEEEEE--CCCCCCHHHHHH
Confidence 4788888 999999999964
No 330
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=82.18 E-value=0.89 Score=46.35 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. |+||||||||.-+
T Consensus 20 ~~Gei~~l~--G~nGsGKSTLl~~ 41 (248)
T PRK03695 20 RAGEILHLV--GPNGAGKSTLLAR 41 (248)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999763
No 331
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=82.18 E-value=0.88 Score=46.36 Aligned_cols=22 Identities=32% Similarity=0.612 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+...+. |+||||||||..+
T Consensus 26 ~~Ge~~~l~--G~nGsGKSTLl~~ 47 (255)
T PRK11231 26 PTGKITALI--GPNGCGKSTLLKC 47 (255)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 468888888 9999999999763
No 332
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=82.12 E-value=0.89 Score=47.18 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+..-+. |+||||||||.-
T Consensus 29 ~~Ge~~~i~--G~nGsGKSTLl~ 49 (274)
T PRK13647 29 PEGSKTALL--GPNGAGKSTLLL 49 (274)
T ss_pred cCCCEEEEE--CCCCCcHHHHHH
Confidence 568888888 999999999965
No 333
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=82.09 E-value=0.8 Score=49.44 Aligned_cols=25 Identities=40% Similarity=0.555 Sum_probs=18.9
Q ss_pred ccccCCCCCEEEEEeEcCCccchhhhccc
Q psy13077 275 LGITNPEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 275 ~gv~~p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+|+.-|.| .++. ||+|||||+||-.
T Consensus 151 ~g~~~p~g--vLL~--GppGtGKT~laka 175 (364)
T TIGR01242 151 VGIEPPKG--VLLY--GPPGTGKTLLAKA 175 (364)
T ss_pred cCCCCCce--EEEE--CCCCCCHHHHHHH
Confidence 45555655 6777 9999999999863
No 334
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=82.01 E-value=0.83 Score=50.15 Aligned_cols=26 Identities=38% Similarity=0.500 Sum_probs=19.8
Q ss_pred hccccCCCCCEEEEEeEcCCccchhhhccc
Q psy13077 274 ILGITNPEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 274 i~gv~~p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
.+|+..|.| .++. ||+|||||+||-.
T Consensus 159 ~~g~~~p~g--vLL~--GppGtGKT~lAka 184 (389)
T PRK03992 159 EVGIEPPKG--VLLY--GPPGTGKTLLAKA 184 (389)
T ss_pred hcCCCCCCc--eEEE--CCCCCChHHHHHH
Confidence 345655655 7777 9999999999863
No 335
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=82.00 E-value=0.91 Score=46.72 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=19.0
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. |+||||||||..+
T Consensus 34 ~~Ge~~~i~--G~nGsGKSTLl~~ 55 (264)
T PRK14243 34 PKNQITAFI--GPSGCGKSTILRC 55 (264)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999764
No 336
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=81.96 E-value=0.84 Score=52.21 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=19.4
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|++..+. |+||||||||.-+
T Consensus 359 ~~G~~v~Iv--G~sGsGKSTLl~l 380 (588)
T PRK13657 359 KPGQTVAIV--GPTGAGKSTLINL 380 (588)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 569998888 9999999999764
No 337
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=81.88 E-value=0.65 Score=48.73 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=12.7
Q ss_pred EeEcCCccchhhhcc
Q psy13077 288 AAAFPSACGKTNLAM 302 (630)
Q Consensus 288 ~~afpSg~GKTtLam 302 (630)
.-+|+||||||||+.
T Consensus 3 gI~G~sGsGKSTl~~ 17 (273)
T cd02026 3 GVAGDSGCGKSTFLR 17 (273)
T ss_pred EEECCCCCCHHHHHH
Confidence 345999999999986
No 338
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=81.87 E-value=1.2 Score=50.43 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=17.0
Q ss_pred CCCCEEEEEeEcCCccchhhh
Q psy13077 280 PEGQKKYIAAAFPSACGKTNL 300 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtL 300 (630)
..|+..-+. ||||||||||
T Consensus 33 ~~Ge~~~ii--G~nGsGKSTL 51 (529)
T PRK15134 33 EAGETLALV--GESGSGKSVT 51 (529)
T ss_pred eCCCEEEEE--CCCCCcHHHH
Confidence 468888888 9999999999
No 339
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=81.81 E-value=0.79 Score=45.39 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=13.0
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
..|+ ||+|||||||..
T Consensus 4 ilI~--GptGSGKTTll~ 19 (198)
T cd01131 4 VLVT--GPTGSGKSTTLA 19 (198)
T ss_pred EEEE--CCCCCCHHHHHH
Confidence 4455 999999999965
No 340
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=81.69 E-value=0.86 Score=51.78 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.6
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|++.-+. |+||||||||.-+
T Consensus 347 ~~G~~~aiv--G~sGsGKSTL~~l 368 (547)
T PRK10522 347 KRGELLFLI--GGNGSGKSTLAML 368 (547)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 679998888 9999999999874
No 341
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=81.67 E-value=0.77 Score=53.76 Aligned_cols=22 Identities=36% Similarity=0.297 Sum_probs=19.7
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|++.-+. |+||||||||+.+
T Consensus 498 ~~G~~vaIv--G~SGsGKSTLlkl 519 (708)
T TIGR01193 498 KMNSKTTIV--GMSGSGKSTLAKL 519 (708)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 679999888 9999999999874
No 342
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=81.66 E-value=0.9 Score=49.26 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=17.8
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 29 ~~Gei~gIi--G~sGaGKSTLlr 49 (343)
T TIGR02314 29 PAGQIYGVI--GASGAGKSTLIR 49 (343)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568877777 999999999965
No 343
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=81.63 E-value=1.2 Score=51.74 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. |+||||||||.-
T Consensus 348 ~~Ge~~~lv--G~nGsGKSTLlk 368 (623)
T PRK10261 348 WPGETLSLV--GESGSGKSTTGR 368 (623)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 579888888 999999999965
No 344
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.63 E-value=0.94 Score=45.88 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. |+||||||||.-
T Consensus 28 ~~Ge~~~i~--G~nGsGKSTLl~ 48 (251)
T PRK14251 28 EEKELTALI--GPSGCGKSTFLR 48 (251)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999975
No 345
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.61 E-value=0.93 Score=47.16 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.0
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. |+||||||||.-+
T Consensus 45 ~~Ge~~~I~--G~nGsGKSTLl~~ 66 (276)
T PRK14271 45 PARAVTSLM--GPTGSGKTTFLRT 66 (276)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999763
No 346
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=81.52 E-value=0.86 Score=44.99 Aligned_cols=17 Identities=35% Similarity=0.471 Sum_probs=13.9
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
+.+|. ||||+||||+|-
T Consensus 2 riiil--G~pGaGK~T~A~ 18 (178)
T COG0563 2 RILIL--GPPGAGKSTLAK 18 (178)
T ss_pred eEEEE--CCCCCCHHHHHH
Confidence 35666 999999999987
No 347
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.52 E-value=0.97 Score=45.56 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+...+. |+||||||||..+
T Consensus 23 ~~Ge~~~i~--G~nG~GKStLl~~ 44 (235)
T cd03299 23 ERGDYFVIL--GPTGSGKSVLLET 44 (235)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 468888888 9999999999763
No 348
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=81.50 E-value=0.94 Score=46.17 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+...+. |+||||||||.-+
T Consensus 25 ~~Ge~~~i~--G~nGsGKSTLl~~ 46 (256)
T TIGR03873 25 PPGSLTGLL--GPNGSGKSTLLRL 46 (256)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 468888888 9999999999763
No 349
>PRK03839 putative kinase; Provisional
Probab=81.49 E-value=0.84 Score=43.87 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=13.8
Q ss_pred EEEEeEcCCccchhhhccc
Q psy13077 285 KYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam~ 303 (630)
.+++ |++||||||++-.
T Consensus 3 I~l~--G~pGsGKsT~~~~ 19 (180)
T PRK03839 3 IAIT--GTPGVGKTTVSKL 19 (180)
T ss_pred EEEE--CCCCCCHHHHHHH
Confidence 4455 9999999999873
No 350
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.48 E-value=0.96 Score=45.90 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.7
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. |+||+|||||..
T Consensus 28 ~~Ge~~~i~--G~nGsGKSTLl~ 48 (251)
T PRK14270 28 YENKITALI--GPSGCGKSTFLR 48 (251)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 569888888 999999999976
No 351
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=81.47 E-value=0.99 Score=45.03 Aligned_cols=20 Identities=15% Similarity=0.178 Sum_probs=16.9
Q ss_pred CCEEEEEeEcCCccchhhhccc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam~ 303 (630)
++-.++. |++|||||+|+..
T Consensus 42 ~~~~~l~--G~~G~GKT~La~a 61 (227)
T PRK08903 42 DRFFYLW--GEAGSGRSHLLQA 61 (227)
T ss_pred CCeEEEE--CCCCCCHHHHHHH
Confidence 4567888 9999999999873
No 352
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.43 E-value=0.96 Score=47.27 Aligned_cols=21 Identities=29% Similarity=0.350 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+...+. |+||||||||.-
T Consensus 63 ~~Ge~~~l~--G~nGsGKSTLl~ 83 (286)
T PRK14275 63 LSKYVTAII--GPSGCGKSTFLR 83 (286)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999965
No 353
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=81.30 E-value=0.97 Score=47.59 Aligned_cols=21 Identities=24% Similarity=0.320 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 28 ~~Ge~~~l~--G~NGaGKSTLl~ 48 (303)
T TIGR01288 28 ARGECFGLL--GPNGAGKSTIAR 48 (303)
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 354
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=81.30 E-value=1 Score=44.81 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. |+||||||||.-
T Consensus 29 ~~G~~~~I~--G~nGsGKStLl~ 49 (220)
T TIGR02982 29 NPGEIVILT--GPSGSGKTTLLT 49 (220)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 355
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=81.26 E-value=0.96 Score=44.01 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=15.2
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
|+..++. ||||+|||||+.
T Consensus 2 ~r~ivl~--Gpsg~GK~tl~~ 20 (184)
T smart00072 2 RRPIVLS--GPSGVGKGTLLA 20 (184)
T ss_pred CcEEEEE--CCCCCCHHHHHH
Confidence 4455566 999999999976
No 356
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=81.24 E-value=0.97 Score=47.03 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+..-+. |+||||||||.-
T Consensus 31 ~~Ge~~~i~--G~nGsGKSTLl~ 51 (279)
T PRK13650 31 KQGEWLSII--GHNGSGKSTTVR 51 (279)
T ss_pred eCCCEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999966
No 357
>KOG0635|consensus
Probab=81.20 E-value=0.94 Score=44.71 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.4
Q ss_pred CCCCCEEEEEeEcCCccchhhhccc
Q psy13077 279 NPEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 279 ~p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.+|=+.+++ |+||+||+|||..
T Consensus 28 ~qkGcviWiT--GLSgSGKStlACa 50 (207)
T KOG0635|consen 28 KQKGCVIWIT--GLSGSGKSTLACA 50 (207)
T ss_pred cCCCcEEEEe--ccCCCCchhHHHH
Confidence 4678899999 9999999999983
No 358
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.17 E-value=1 Score=45.60 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.0
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. |+||||||||..+
T Consensus 27 ~~Ge~~~i~--G~nGsGKSTLl~~ 48 (250)
T PRK14266 27 PKNSVTALI--GPSGCGKSTFIRT 48 (250)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999753
No 359
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.17 E-value=1 Score=46.07 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. |+||||||||..+
T Consensus 36 ~~Ge~~~i~--G~nGsGKSTLl~~ 57 (258)
T PRK14268 36 PKNSVTALI--GPSGCGKSTFIRC 57 (258)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468888888 9999999999763
No 360
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.12 E-value=1 Score=46.25 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+...+. |+||||||||.-
T Consensus 40 ~~Ge~~~i~--G~nGsGKSTLl~ 60 (265)
T PRK14252 40 HEKQVTALI--GPSGCGKSTFLR 60 (265)
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999975
No 361
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=81.12 E-value=1.3 Score=46.92 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=17.7
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||+|||||||.-
T Consensus 31 ~~Gei~gll--GpNGaGKSTLl~ 51 (306)
T PRK13537 31 QRGECFGLL--GPNGAGKTTTLR 51 (306)
T ss_pred eCCcEEEEE--CCCCCCHHHHHH
Confidence 568877777 999999999965
No 362
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=81.11 E-value=1 Score=46.42 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=18.7
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. |+||||||||..+
T Consensus 43 ~~Ge~~~i~--G~nGsGKSTLl~~ 64 (267)
T PRK14235 43 PEKTVTAFI--GPSGCGKSTFLRC 64 (267)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 458888888 9999999999763
No 363
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.08 E-value=1 Score=46.11 Aligned_cols=22 Identities=27% Similarity=0.387 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+...+. |+||||||||.-+
T Consensus 31 ~~Ge~~~l~--G~nGsGKSTLlk~ 52 (259)
T PRK14260 31 YRNKVTAII--GPSGCGKSTFIKT 52 (259)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468888888 9999999999653
No 364
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=81.08 E-value=0.8 Score=41.92 Aligned_cols=13 Identities=46% Similarity=0.524 Sum_probs=11.8
Q ss_pred EcCCccchhhhcc
Q psy13077 290 AFPSACGKTNLAM 302 (630)
Q Consensus 290 afpSg~GKTtLam 302 (630)
.||+|||||+|+.
T Consensus 5 ~G~~G~GKt~l~~ 17 (139)
T PF07728_consen 5 VGPPGTGKTTLAR 17 (139)
T ss_dssp EESSSSSHHHHHH
T ss_pred ECCCCCCHHHHHH
Confidence 3999999999986
No 365
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.01 E-value=1 Score=45.52 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+..-+. |+||||||||.-+
T Consensus 28 ~~Ge~~~i~--G~nGsGKSTLl~~ 49 (252)
T PRK14272 28 QRGTVNALI--GPSGCGKTTFLRA 49 (252)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468888888 9999999999763
No 366
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=81.00 E-value=0.94 Score=53.78 Aligned_cols=22 Identities=41% Similarity=0.496 Sum_probs=19.5
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
|.|++.-+. |.||||||||+-+
T Consensus 497 ~~Ge~vaIv--G~SGsGKSTL~KL 518 (709)
T COG2274 497 PPGEKVAIV--GRSGSGKSTLLKL 518 (709)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 679888888 9999999999875
No 367
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=80.96 E-value=1 Score=47.07 Aligned_cols=21 Identities=24% Similarity=0.282 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+..-+. |+||||||||.-
T Consensus 31 ~~Ge~~~i~--G~nGsGKSTLl~ 51 (286)
T PRK13646 31 EQGKYYAIV--GQTGSGKSTLIQ 51 (286)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 368
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.91 E-value=1 Score=45.56 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+..-+. |+||+|||||.-
T Consensus 26 ~~Ge~~~i~--G~nGsGKSTLl~ 46 (246)
T PRK14269 26 EQNKITALI--GASGCGKSTFLR 46 (246)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999965
No 369
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.91 E-value=1 Score=47.06 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+...+. |+||||||||.-
T Consensus 63 ~~Ge~~~I~--G~nGsGKSTLl~ 83 (285)
T PRK14254 63 PENQVTAMI--GPSGCGKSTFLR 83 (285)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999965
No 370
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=80.79 E-value=0.98 Score=51.25 Aligned_cols=22 Identities=41% Similarity=0.490 Sum_probs=19.5
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|++.-+. |+||||||||..+
T Consensus 342 ~~G~~~~iv--G~sGsGKSTL~~l 363 (544)
T TIGR01842 342 QAGEALAII--GPSGSGKSTLARL 363 (544)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 579899999 9999999999764
No 371
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=80.66 E-value=1.1 Score=46.78 Aligned_cols=21 Identities=33% Similarity=0.279 Sum_probs=18.1
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+..-+. |+||||||||.-
T Consensus 31 ~~Ge~~~i~--G~nGaGKSTLl~ 51 (279)
T PRK13635 31 YEGEWVAIV--GHNGSGKSTLAK 51 (279)
T ss_pred cCCCEEEEE--CCCCCcHHHHHH
Confidence 468888888 999999999964
No 372
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=80.65 E-value=1.1 Score=44.07 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=18.0
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+...+. |+||||||||.-
T Consensus 24 ~~Ge~~~i~--G~nGsGKStLl~ 44 (200)
T cd03217 24 KKGEVHALM--GPNGSGKSTLAK 44 (200)
T ss_pred CCCcEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999855
No 373
>PRK14531 adenylate kinase; Provisional
Probab=80.59 E-value=0.96 Score=43.97 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=14.6
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
..+++ ||+||||||+|.
T Consensus 4 ~i~i~--G~pGsGKsT~~~ 20 (183)
T PRK14531 4 RLLFL--GPPGAGKGTQAA 20 (183)
T ss_pred EEEEE--CCCCCCHHHHHH
Confidence 46666 999999999987
No 374
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=80.59 E-value=1 Score=51.60 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=19.6
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|++.-+. |+||||||||.-+
T Consensus 365 ~~Ge~iaIv--G~SGsGKSTLl~l 386 (592)
T PRK10790 365 PSRGFVALV--GHTGSGKSTLASL 386 (592)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 679999999 9999999999764
No 375
>PRK02496 adk adenylate kinase; Provisional
Probab=80.57 E-value=0.95 Score=43.68 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=14.0
Q ss_pred EEEEeEcCCccchhhhccc
Q psy13077 285 KYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam~ 303 (630)
.+|+ ||+||||||+|..
T Consensus 4 i~i~--G~pGsGKst~a~~ 20 (184)
T PRK02496 4 LIFL--GPPGAGKGTQAVV 20 (184)
T ss_pred EEEE--CCCCCCHHHHHHH
Confidence 4555 9999999999873
No 376
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=80.54 E-value=1.5 Score=45.75 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+..-+. |+||||||||.-+
T Consensus 30 ~~Ge~~~i~--G~nGaGKSTLl~~ 51 (283)
T PRK13636 30 KKGEVTAIL--GGNGAGKSTLFQN 51 (283)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999653
No 377
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=80.51 E-value=1.1 Score=48.04 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. |+||||||||..+
T Consensus 50 ~~Ge~~~I~--G~nGsGKSTLl~~ 71 (320)
T PRK13631 50 EKNKIYFII--GNSGSGKSTLVTH 71 (320)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999763
No 378
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=80.47 E-value=1.1 Score=46.96 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=18.1
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+..-+. |+||||||||.-
T Consensus 31 ~~Ge~~~i~--G~nGaGKSTLl~ 51 (287)
T PRK13637 31 EDGEFVGLI--GHTGSGKSTLIQ 51 (287)
T ss_pred cCCCEEEEE--CCCCCcHHHHHH
Confidence 568888888 999999999965
No 379
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.46 E-value=0.99 Score=55.09 Aligned_cols=31 Identities=32% Similarity=0.394 Sum_probs=25.0
Q ss_pred ccch-hccccCCCCCEEEEEeEcCCccchhhhcc
Q psy13077 270 EHML-ILGITNPEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 270 eHm~-i~gv~~p~G~~~~f~~afpSg~GKTtLam 302 (630)
+|=+ ++-++=|.++-+.|+ |+|||||||||+
T Consensus 9 ~hNLKni~v~iP~~~l~v~T--GvSGSGKSSLaf 40 (924)
T TIGR00630 9 EHNLKNIDVEIPRDKLVVIT--GLSGSGKSSLAF 40 (924)
T ss_pred cccccccccccCCCceEEEe--cCCCCCchhHHH
Confidence 3444 455666999999999 999999999997
No 380
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=80.43 E-value=1.1 Score=43.39 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=15.6
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
++..++. ||||+|||||+-
T Consensus 2 ~r~ivl~--Gpsg~GK~~l~~ 20 (183)
T PF00625_consen 2 RRPIVLV--GPSGSGKSTLAK 20 (183)
T ss_dssp SSEEEEE--SSTTSSHHHHHH
T ss_pred CCEEEEE--CCCCCCHHHHHH
Confidence 4556666 999999999976
No 381
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=80.41 E-value=1 Score=49.95 Aligned_cols=24 Identities=42% Similarity=0.555 Sum_probs=17.8
Q ss_pred cccCCCCCEEEEEeEcCCccchhhhccc
Q psy13077 276 GITNPEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 276 gv~~p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
|+.-|.| .++. ||+|||||+||..
T Consensus 175 Gl~~pkg--vLL~--GppGTGKT~LAka 198 (398)
T PTZ00454 175 GIDPPRG--VLLY--GPPGTGKTMLAKA 198 (398)
T ss_pred CCCCCce--EEEE--CCCCCCHHHHHHH
Confidence 4444444 7777 9999999999863
No 382
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=80.37 E-value=1 Score=52.38 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..++. |+||||||||--
T Consensus 417 ~~G~~llI~--G~SG~GKTsLlR 437 (604)
T COG4178 417 RPGERLLIT--GESGAGKTSLLR 437 (604)
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 468999999 999999999954
No 383
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=80.37 E-value=0.99 Score=49.75 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=17.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
++|....|. ||+|+|||||+.
T Consensus 135 ~~g~ii~lv--GptGvGKTTtia 155 (374)
T PRK14722 135 ERGGVFALM--GPTGVGKTTTTA 155 (374)
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 457677777 999999999977
No 384
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=80.32 E-value=1.1 Score=47.73 Aligned_cols=20 Identities=15% Similarity=-0.052 Sum_probs=16.0
Q ss_pred CCEEEEEeEcCCccchhhhccc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam~ 303 (630)
.+...++ |+|||||||++..
T Consensus 6 ~~~i~i~--G~~GsGKtt~~~~ 25 (288)
T PRK05416 6 MRLVIVT--GLSGAGKSVALRA 25 (288)
T ss_pred ceEEEEE--CCCCCcHHHHHHH
Confidence 4456666 9999999999883
No 385
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=80.20 E-value=1 Score=52.59 Aligned_cols=22 Identities=32% Similarity=0.294 Sum_probs=19.6
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|++.-+. |+||||||||.-+
T Consensus 489 ~~G~~iaIv--G~sGsGKSTLlkl 510 (694)
T TIGR03375 489 RPGEKVAII--GRIGSGKSTLLKL 510 (694)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 679998888 9999999999764
No 386
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=80.11 E-value=1 Score=52.65 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.6
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|++.-+. |+||||||||..+
T Consensus 503 ~~Ge~vaIv--G~sGsGKSTLlkl 524 (710)
T TIGR03796 503 QPGQRVALV--GGSGSGKSTIAKL 524 (710)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 679999898 9999999999864
No 387
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=80.09 E-value=1.1 Score=46.92 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=18.7
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. |+||||||||.-+
T Consensus 30 ~~Ge~v~i~--G~nGsGKSTLl~~ 51 (288)
T PRK13643 30 KKGSYTALI--GHTGSGKSTLLQH 51 (288)
T ss_pred cCCCEEEEE--CCCCChHHHHHHH
Confidence 578888888 9999999999763
No 388
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=80.08 E-value=1.1 Score=51.35 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=19.3
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. ||||||||||..+
T Consensus 339 ~~G~~~~iv--G~sGsGKSTLl~l 360 (569)
T PRK10789 339 KPGQMLGIC--GPTGSGKSTLLSL 360 (569)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 569899898 9999999999763
No 389
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.03 E-value=1.1 Score=45.34 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=18.7
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+..-+. |+||+|||||.-+
T Consensus 27 ~~Ge~~~i~--G~nGsGKSTLl~~ 48 (250)
T PRK14245 27 EEKSVVAFI--GPSGCGKSTFLRL 48 (250)
T ss_pred eCCCEEEEE--CCCCCCHHHHHHH
Confidence 468888888 9999999999764
No 390
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=79.96 E-value=0.99 Score=45.10 Aligned_cols=32 Identities=38% Similarity=0.440 Sum_probs=19.1
Q ss_pred EEeEcCCccchhhhcc-cC--CCCCCCeeEEeecc
Q psy13077 287 IAAAFPSACGKTNLAM-LN--PTLPGYKVECVGDD 318 (630)
Q Consensus 287 f~~afpSg~GKTtLam-~~--p~~pgwk~~lIGDD 318 (630)
++-.||+|+||||+++ |. -...|++|.+|-=|
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D 38 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISAD 38 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEES
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCC
Confidence 3445999999999876 10 00126777777655
No 391
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=79.96 E-value=1.1 Score=47.52 Aligned_cols=21 Identities=24% Similarity=0.214 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+..-+. |+||||||||.-
T Consensus 31 ~~Ge~v~ii--G~nGsGKSTLl~ 51 (305)
T PRK13651 31 NQGEFIAII--GQTGSGKTTFIE 51 (305)
T ss_pred eCCCEEEEE--CCCCCcHHHHHH
Confidence 468888888 999999999965
No 392
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=79.93 E-value=1.1 Score=46.04 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=19.9
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|....+. |++|||||++++
T Consensus 21 p~g~~~lI~--G~pGsGKT~f~~ 41 (260)
T COG0467 21 PRGSVVLIT--GPPGTGKTIFAL 41 (260)
T ss_pred cCCcEEEEE--cCCCCcHHHHHH
Confidence 889999999 999999999998
No 393
>PRK00698 tmk thymidylate kinase; Validated
Probab=79.91 E-value=1.1 Score=43.46 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=13.7
Q ss_pred EEEeEcCCccchhhhcc
Q psy13077 286 YIAAAFPSACGKTNLAM 302 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam 302 (630)
+++--|++||||||++.
T Consensus 5 ~I~ieG~~gsGKsT~~~ 21 (205)
T PRK00698 5 FITIEGIDGAGKSTQIE 21 (205)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 44444999999999986
No 394
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=79.90 E-value=0.91 Score=48.17 Aligned_cols=15 Identities=27% Similarity=0.244 Sum_probs=12.9
Q ss_pred EeEcCCccchhhhcc
Q psy13077 288 AAAFPSACGKTNLAM 302 (630)
Q Consensus 288 ~~afpSg~GKTtLam 302 (630)
.-+|+|||||||++.
T Consensus 3 gItG~SGSGKTTv~~ 17 (277)
T cd02029 3 AVTGSSGAGTTTVKR 17 (277)
T ss_pred EEECCCCCCHHHHHH
Confidence 445999999999986
No 395
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=79.89 E-value=1.1 Score=50.51 Aligned_cols=21 Identities=33% Similarity=0.233 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+..-+. ||||||||||.-
T Consensus 24 ~~Ge~~~ii--G~nGsGKSTLl~ 44 (520)
T TIGR03269 24 EEGEVLGIL--GRSGAGKSVLMH 44 (520)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999975
No 396
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=79.87 E-value=0.95 Score=47.01 Aligned_cols=21 Identities=38% Similarity=0.494 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|..+-++ |+||||||.|+|
T Consensus 36 ~~g~itEi~--G~~gsGKTql~l 56 (256)
T PF08423_consen 36 PTGSITEIV--GESGSGKTQLCL 56 (256)
T ss_dssp ETTSEEEEE--ESTTSSHHHHHH
T ss_pred CCCcEEEEE--EecccccchHHH
Confidence 568899999 999999999976
No 397
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.82 E-value=1.2 Score=45.72 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. |+||||||||.-+
T Consensus 31 ~~Ge~~~I~--G~nGsGKSTLl~~ 52 (261)
T PRK14258 31 YQSKVTAII--GPSGCGKSTFLKC 52 (261)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999763
No 398
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=79.75 E-value=1.1 Score=50.87 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.4
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. |+||||||||..+
T Consensus 364 ~~Ge~i~Iv--G~sGsGKSTLlkl 385 (576)
T TIGR02204 364 RPGETVALV--GPSGAGKSTLFQL 385 (576)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 569999999 9999999999773
No 399
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=79.72 E-value=0.92 Score=43.17 Aligned_cols=13 Identities=31% Similarity=0.378 Sum_probs=11.9
Q ss_pred EcCCccchhhhcc
Q psy13077 290 AFPSACGKTNLAM 302 (630)
Q Consensus 290 afpSg~GKTtLam 302 (630)
+|++|||||+|++
T Consensus 5 ~G~~G~GKT~l~~ 17 (187)
T cd01124 5 SGGPGTGKTTFAL 17 (187)
T ss_pred EcCCCCCHHHHHH
Confidence 3999999999987
No 400
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=79.69 E-value=1.4 Score=47.42 Aligned_cols=37 Identities=19% Similarity=0.034 Sum_probs=26.5
Q ss_pred CCCEEEEEeEcCCccchhhhcccCC---CCCCCeeEEeeccE
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAMLNP---TLPGYKVECVGDDI 319 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam~~p---~~pgwk~~lIGDDi 319 (630)
.|....|. ||+|+||||++..-. ...|.+|-+++-|.
T Consensus 113 ~~~vi~lv--GpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 113 KPFVILVV--GVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCeEEEEE--CCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 46566666 999999999876211 12467899999886
No 401
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=79.63 E-value=1.2 Score=46.69 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+..-+. |+||||||||.-
T Consensus 31 ~~Ge~~~i~--G~nGsGKSTLl~ 51 (290)
T PRK13634 31 PSGSYVAII--GHTGSGKSTLLQ 51 (290)
T ss_pred cCCCEEEEE--CCCCCcHHHHHH
Confidence 568888888 999999999965
No 402
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=79.57 E-value=1.5 Score=47.05 Aligned_cols=34 Identities=29% Similarity=0.282 Sum_probs=22.4
Q ss_pred ccccchhccccCCCCCEEEEEeEcCCccchhhhccc
Q psy13077 268 LAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 268 LaeHm~i~gv~~p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
|..+++=..+..|.-..+-+| |+||+|||||--+
T Consensus 10 lG~~~l~a~~~~p~~GvTAlF--G~SGsGKTslin~ 43 (352)
T COG4148 10 LGNFALDANFTLPARGITALF--GPSGSGKTSLINM 43 (352)
T ss_pred cCceEEEEeccCCCCceEEEe--cCCCCChhhHHHH
Confidence 344454334556762366677 8999999999653
No 403
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=79.48 E-value=1.2 Score=39.08 Aligned_cols=16 Identities=31% Similarity=0.214 Sum_probs=12.8
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.++. |++|+|||||--
T Consensus 2 I~V~--G~~g~GKTsLi~ 17 (119)
T PF08477_consen 2 IVVL--GDSGVGKTSLIR 17 (119)
T ss_dssp EEEE--CSTTSSHHHHHH
T ss_pred EEEE--CcCCCCHHHHHH
Confidence 4555 999999999943
No 404
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=79.45 E-value=1.1 Score=52.71 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.5
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|++.-+. ||||||||||.-+
T Consensus 505 ~~Ge~vaIv--G~SGsGKSTLl~l 526 (711)
T TIGR00958 505 HPGEVVALV--GPSGSGKSTVAAL 526 (711)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 679999898 9999999999764
No 405
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=79.41 E-value=1.2 Score=51.18 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.2
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|++.-+. ||||||||||.-+
T Consensus 364 ~~G~~~aiv--G~sGsGKSTL~~l 385 (574)
T PRK11160 364 KAGEKVALL--GRTGCGKSTLLQL 385 (574)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 679898888 9999999998763
No 406
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=79.35 E-value=1.2 Score=46.08 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|+..-+. ||||||||||.-+
T Consensus 26 ~~Ge~~~l~--G~nGsGKSTLl~~ 47 (275)
T PRK13639 26 EKGEMVALL--GPNGAGKSTLFLH 47 (275)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999663
No 407
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=79.34 E-value=1.2 Score=43.82 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=16.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+..+-..++-||++||||||++.
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~ 33 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLAR 33 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHH
T ss_pred cccCCEEEEEeCCCCCCHHHHHH
Confidence 44556777778999999999987
No 408
>PRK06526 transposase; Provisional
Probab=79.33 E-value=1 Score=46.77 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=16.0
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
++-.++. ||+|||||+||.
T Consensus 98 ~~nlll~--Gp~GtGKThLa~ 116 (254)
T PRK06526 98 KENVVFL--GPPGTGKTHLAI 116 (254)
T ss_pred CceEEEE--eCCCCchHHHHH
Confidence 3457777 999999999988
No 409
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=79.31 E-value=1.1 Score=54.70 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=23.1
Q ss_pred hccccCCCCCEEEEEeEcCCccchhhhcc
Q psy13077 274 ILGITNPEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 274 i~gv~~p~G~~~~f~~afpSg~GKTtLam 302 (630)
++-|.=|.++-+.|+ |+|||||||||+
T Consensus 18 ni~v~iP~~~l~v~T--GvSGSGKSSLaf 44 (943)
T PRK00349 18 NIDLDIPRDKLVVFT--GLSGSGKSSLAF 44 (943)
T ss_pred ccccccCCCceEEEe--cCCCCCchhHHH
Confidence 445566999999999 999999999997
No 410
>CHL00181 cbbX CbbX; Provisional
Probab=79.22 E-value=1.3 Score=46.69 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=16.1
Q ss_pred CCEEEEEeEcCCccchhhhccc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam~ 303 (630)
|-...|. ||+||||||+|.+
T Consensus 59 ~~~ill~--G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFT--GSPGTGKTTVALK 78 (287)
T ss_pred CceEEEE--CCCCCCHHHHHHH
Confidence 4446666 9999999999884
No 411
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=79.13 E-value=1.2 Score=50.17 Aligned_cols=21 Identities=24% Similarity=0.108 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||.-
T Consensus 287 ~~Ge~~~l~--G~NGsGKSTLlk 307 (510)
T PRK09700 287 CRGEILGFA--GLVGSGRTELMN 307 (510)
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 569888888 999999999965
No 412
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=79.06 E-value=3.9 Score=41.74 Aligned_cols=51 Identities=25% Similarity=0.294 Sum_probs=35.7
Q ss_pred CCCCEEEEEeEcCCccchhhhcc----cCCCCCCCeeEEeeccEEEEEECCCccEEEec
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGDDIAWMKFDKEGVLRAIN 334 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam----~~p~~pgwk~~lIGDDiaW~~~~~dG~l~a~N 334 (630)
.+||+.-+. |.||+||+|+-- |.-|..| .-.|++++-=++.|.||.|.+.+
T Consensus 30 ~~GdVisII--GsSGSGKSTfLRCiN~LE~P~~G--~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 30 NAGDVISII--GSSGSGKSTFLRCINFLEKPSAG--SIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred CCCCEEEEe--cCCCCchhHHHHHHHhhcCCCCc--eEEECCeEEEeeeCCCCCeeeCC
Confidence 568998888 999999999742 3333456 45555554347779999865543
No 413
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=79.05 E-value=1.3 Score=46.09 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+..-+. |+||||||||.-
T Consensus 34 ~~Ge~~~l~--G~nGsGKSTLl~ 54 (280)
T PRK13633 34 KKGEFLVIL--GRNGSGKSTIAK 54 (280)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999965
No 414
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=79.00 E-value=1.3 Score=43.03 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=14.9
Q ss_pred EEEEEeEcCCccchhhhccc
Q psy13077 284 KKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam~ 303 (630)
..++. |++|||||||+-+
T Consensus 6 ~I~li--G~~GaGKStl~~~ 23 (172)
T PRK05057 6 NIFLV--GPMGAGKSTIGRQ 23 (172)
T ss_pred EEEEE--CCCCcCHHHHHHH
Confidence 45566 9999999999874
No 415
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=78.89 E-value=1.2 Score=44.15 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=15.2
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.| ...+. ||||||||||.-
T Consensus 22 ~g-~~~i~--G~nGsGKStll~ 40 (197)
T cd03278 22 PG-LTAIV--GPNGSGKSNIID 40 (197)
T ss_pred CC-cEEEE--CCCCCCHHHHHH
Confidence 46 56666 999999999965
No 416
>PRK08727 hypothetical protein; Validated
Probab=78.88 E-value=1.3 Score=45.04 Aligned_cols=18 Identities=39% Similarity=0.615 Sum_probs=15.5
Q ss_pred CEEEEEeEcCCccchhhhcc
Q psy13077 283 QKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam 302 (630)
+-.++. |+||||||.|+.
T Consensus 42 ~~l~l~--G~~G~GKThL~~ 59 (233)
T PRK08727 42 DWLYLS--GPAGTGKTHLAL 59 (233)
T ss_pred CeEEEE--CCCCCCHHHHHH
Confidence 457777 999999999987
No 417
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=78.79 E-value=1.2 Score=47.28 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=16.0
Q ss_pred CEEEEEeEcCCccchhhhccc
Q psy13077 283 QKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam~ 303 (630)
+..+|. ||+|||||+||..
T Consensus 52 ~~~ll~--GppG~GKT~la~~ 70 (328)
T PRK00080 52 DHVLLY--GPPGLGKTTLANI 70 (328)
T ss_pred CcEEEE--CCCCccHHHHHHH
Confidence 356777 9999999999874
No 418
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=78.78 E-value=1.3 Score=45.90 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=19.0
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. ||+|||||||..+
T Consensus 48 ~~Ge~~~li--G~NGsGKSTLlk~ 69 (264)
T PRK13546 48 YEGDVIGLV--GINGSGKSTLSNI 69 (264)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999763
No 419
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=78.70 E-value=1.3 Score=49.98 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 29 ~~Ge~~~li--G~nGsGKSTLl~ 49 (510)
T PRK09700 29 YPGEIHALL--GENGAGKSTLMK 49 (510)
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999964
No 420
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=78.67 E-value=1.3 Score=45.65 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.2
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
++|+...+. |++|||||||..+
T Consensus 28 ~~Ge~~~i~--G~nGsGKSTL~~~ 49 (235)
T COG1122 28 EKGERVLLI--GPNGSGKSTLLKL 49 (235)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 678888888 9999999999874
No 421
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=78.66 E-value=1.1 Score=50.98 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=19.7
Q ss_pred CCCCEEEEEeEcCCccchhhhcccC
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAMLN 304 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~~ 304 (630)
+.|++.-+. ||||||||||+.+-
T Consensus 353 ~~Ge~vaiV--G~sGsGKSTl~~LL 375 (567)
T COG1132 353 EPGEKVAIV--GPSGSGKSTLIKLL 375 (567)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHH
Confidence 668888888 99999999998854
No 422
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=78.66 E-value=1 Score=43.05 Aligned_cols=16 Identities=13% Similarity=0.146 Sum_probs=13.3
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.+++ |++||||||+|.
T Consensus 2 i~i~--G~pGsGKst~a~ 17 (183)
T TIGR01359 2 VFVL--GGPGSGKGTQCA 17 (183)
T ss_pred EEEE--CCCCCCHHHHHH
Confidence 3456 999999999976
No 423
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=78.66 E-value=1.3 Score=51.17 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=18.7
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+.+-+. |+||||||||..+
T Consensus 345 ~~g~~talv--G~SGaGKSTLl~l 366 (559)
T COG4988 345 KAGQLTALV--GASGAGKSTLLNL 366 (559)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999653
No 424
>PF13173 AAA_14: AAA domain
Probab=78.63 E-value=1.4 Score=40.33 Aligned_cols=19 Identities=26% Similarity=0.280 Sum_probs=15.9
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
++...+. ||-+||||||+.
T Consensus 2 ~~~~~l~--G~R~vGKTtll~ 20 (128)
T PF13173_consen 2 RKIIILT--GPRGVGKTTLLK 20 (128)
T ss_pred CCeEEEE--CCCCCCHHHHHH
Confidence 4567777 999999999975
No 425
>PHA00729 NTP-binding motif containing protein
Probab=78.61 E-value=1.4 Score=45.52 Aligned_cols=18 Identities=28% Similarity=0.209 Sum_probs=14.7
Q ss_pred EEEEEeEcCCccchhhhccc
Q psy13077 284 KKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam~ 303 (630)
..+++ |++||||||||+.
T Consensus 19 nIlIt--G~pGvGKT~LA~a 36 (226)
T PHA00729 19 SAVIF--GKQGSGKTTYALK 36 (226)
T ss_pred EEEEE--CCCCCCHHHHHHH
Confidence 35555 9999999999983
No 426
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=78.55 E-value=1.3 Score=49.55 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||.-
T Consensus 27 ~~Ge~~~li--G~nGsGKSTLl~ 47 (490)
T PRK10938 27 NAGDSWAFV--GANGSGKSALAR 47 (490)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 569888888 999999999964
No 427
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=78.54 E-value=1.2 Score=43.76 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=15.9
Q ss_pred CCEEEEEeEcCCccchhhhccc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam~ 303 (630)
++-.++. |++|||||.||+.
T Consensus 47 ~~~l~l~--G~~G~GKThLa~a 66 (178)
T PF01695_consen 47 GENLILY--GPPGTGKTHLAVA 66 (178)
T ss_dssp --EEEEE--ESTTSSHHHHHHH
T ss_pred CeEEEEE--hhHhHHHHHHHHH
Confidence 4558888 9999999999883
No 428
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=78.52 E-value=1.2 Score=42.22 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=14.9
Q ss_pred EEEEEeEcCCccchhhhccc
Q psy13077 284 KKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam~ 303 (630)
..++. |++||||||++..
T Consensus 4 ~i~~~--G~~GsGKst~~~~ 21 (171)
T PRK03731 4 PLFLV--GARGCGKTTVGMA 21 (171)
T ss_pred eEEEE--CCCCCCHHHHHHH
Confidence 45666 9999999999874
No 429
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=78.41 E-value=1.3 Score=50.13 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=19.4
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|++..+. |+||||||||..+
T Consensus 356 ~~G~~v~Iv--G~sGsGKSTLl~l 377 (571)
T TIGR02203 356 EPGETVALV--GRSGSGKSTLVNL 377 (571)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568899999 9999999999764
No 430
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=78.32 E-value=1.1 Score=49.51 Aligned_cols=60 Identities=7% Similarity=0.133 Sum_probs=28.8
Q ss_pred cCCCCCcCCCCCCchhhhHhhhcCCHHHHHH-HHHHHHHHHHHhhCCCccHHHHHHHHHHHH
Q psy13077 566 IPKPEALITTNLASDVDLEELFSFDKSFWEQ-EVQDLQRYFNEQLGADLPTAIQAEIDALKQ 626 (630)
Q Consensus 566 iP~~~~l~~~Gl~~~~~~~~~~~~d~~~w~~-e~~~l~~~f~~~~~~~lP~ei~~~l~~~~~ 626 (630)
|-..+...-.|+| --++.|++-+...-|.+ |++++-+.=.+.-+-.+.++.++.|.++-.
T Consensus 321 irGt~~~sphGiP-~DlLDRllII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~ 381 (398)
T PF06068_consen 321 IRGTDIISPHGIP-LDLLDRLLIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGV 381 (398)
T ss_dssp -BTTS-EEETT---HHHHTTEEEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHH
T ss_pred ccCccCcCCCCCC-cchHhhcEEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhh
Confidence 4444444468888 34556888887777754 344443322223456788888888887654
No 431
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=78.29 E-value=1.2 Score=49.94 Aligned_cols=25 Identities=40% Similarity=0.562 Sum_probs=18.5
Q ss_pred ccccCCCCCEEEEEeEcCCccchhhhccc
Q psy13077 275 LGITNPEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 275 ~gv~~p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+|+..|.| .++. ||+|||||+||-+
T Consensus 212 ~gi~~p~g--VLL~--GPPGTGKT~LAra 236 (438)
T PTZ00361 212 IGIKPPKG--VILY--GPPGTGKTLLAKA 236 (438)
T ss_pred cCCCCCcE--EEEE--CCCCCCHHHHHHH
Confidence 45544544 6677 9999999999863
No 432
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=78.27 E-value=1.2 Score=51.12 Aligned_cols=33 Identities=30% Similarity=0.532 Sum_probs=22.0
Q ss_pred ccCcccccchhccccCCCCCEEEEEeEcCCccchhhhcc
Q psy13077 264 REGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 264 ~eGwLaeHm~i~gv~~p~G~~~~f~~afpSg~GKTtLam 302 (630)
-+.||-.+.+ + ....+..++. |||||||||+.-
T Consensus 31 V~~wl~~~~~--~--~~~~~iLlLt--GP~G~GKtttv~ 63 (519)
T PF03215_consen 31 VRSWLEEMFS--G--SSPKRILLLT--GPSGCGKTTTVK 63 (519)
T ss_pred HHHHHHHHhc--c--CCCcceEEEE--CCCCCCHHHHHH
Confidence 4567766554 2 1234456666 999999999865
No 433
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=78.24 E-value=1.3 Score=50.54 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=19.6
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|++.-+. ||||||||||..+
T Consensus 366 ~~G~~~aiv--G~sGsGKSTl~~l 387 (555)
T TIGR01194 366 AQGDIVFIV--GENGCGKSTLAKL 387 (555)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 679999999 9999999999874
No 434
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=78.22 E-value=0.89 Score=54.34 Aligned_cols=44 Identities=27% Similarity=0.373 Sum_probs=30.3
Q ss_pred cccCCCCCEEEEEeEcCCccchhhhcccCCCCCCCeeEEeeccEEEEEEC
Q psy13077 276 GITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDIAWMKFD 325 (630)
Q Consensus 276 gv~~p~G~~~~f~~afpSg~GKTtLam~~p~~pgwk~~lIGDDiaW~~~~ 325 (630)
|+.+|+-=.--|+.+||||+|||-||-.-. ..+-||+.+-||||
T Consensus 513 GL~dp~rPigsFlF~GPTGVGKTELAkaLA------~~Lfg~e~aliR~D 556 (786)
T COG0542 513 GLGDPNRPIGSFLFLGPTGVGKTELAKALA------EALFGDEQALIRID 556 (786)
T ss_pred CCCCCCCCceEEEeeCCCcccHHHHHHHHH------HHhcCCCccceeec
Confidence 566665323344445999999999987323 36667777999986
No 435
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=78.14 E-value=1.4 Score=45.68 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. |+||+|||||.-
T Consensus 28 ~~Ge~~~i~--G~NGsGKSTLl~ 48 (277)
T PRK13652 28 PRNSRIAVI--GPNGAGKSTLFR 48 (277)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 569888888 999999999965
No 436
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=78.09 E-value=1.4 Score=49.40 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||.-
T Consensus 284 ~~Ge~~~i~--G~NGsGKSTLl~ 304 (490)
T PRK10938 284 NPGEHWQIV--GPNGAGKSTLLS 304 (490)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 437
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=78.08 E-value=1.4 Score=45.33 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. |+||||||||.-
T Consensus 32 ~~Ge~~~i~--G~nGsGKSTLl~ 52 (261)
T PRK14263 32 RKNEITGFI--GPSGCGKSTVLR 52 (261)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 438
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=78.07 E-value=1.4 Score=43.88 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=15.9
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
|+...+. ||+|||||||.-
T Consensus 28 ~~~~~i~--G~NGsGKSTll~ 46 (213)
T cd03279 28 NGLFLIC--GPTGAGKSTILD 46 (213)
T ss_pred cCEEEEE--CCCCCCHHHHHH
Confidence 6677777 999999999944
No 439
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.07 E-value=1.3 Score=43.67 Aligned_cols=19 Identities=26% Similarity=0.134 Sum_probs=15.6
Q ss_pred CEEEEEeEcCCccchhhhccc
Q psy13077 283 QKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam~ 303 (630)
+..-+. ||||||||||.-+
T Consensus 24 e~~~i~--G~nGsGKSTLl~~ 42 (214)
T cd03297 24 EVTGIF--GASGAGKSTLLRC 42 (214)
T ss_pred eeEEEE--CCCCCCHHHHHHH
Confidence 566666 9999999999763
No 440
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=78.04 E-value=1.4 Score=52.92 Aligned_cols=32 Identities=31% Similarity=0.375 Sum_probs=27.3
Q ss_pred cccch-hccccCCCCCEEEEEeEcCCccchhhhcc
Q psy13077 269 AEHML-ILGITNPEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 269 aeHm~-i~gv~~p~G~~~~f~~afpSg~GKTtLam 302 (630)
-+|.+ ++-+.-|.++-..|+ |+||+||++||.
T Consensus 12 rehNLKNi~l~iPr~klvV~T--GlSGSGKSSLAF 44 (935)
T COG0178 12 REHNLKNIDLEIPRNKLVVIT--GLSGSGKSSLAF 44 (935)
T ss_pred hhcccccccccccCCcEEEEe--cCCCCCchhhhh
Confidence 36777 666777999889999 999999999986
No 441
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=78.04 E-value=1.4 Score=45.64 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+..-+. |+||||||||.-
T Consensus 31 ~~Ge~~~I~--G~nGsGKSTLl~ 51 (277)
T PRK13642 31 TKGEWVSII--GQNGSGKSTTAR 51 (277)
T ss_pred cCCCEEEEE--CCCCCcHHHHHH
Confidence 468888888 999999999965
No 442
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=77.84 E-value=1.4 Score=45.64 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=18.1
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. |+||||||||.-
T Consensus 26 ~~Ge~~~i~--G~nGsGKSTLl~ 46 (274)
T PRK13644 26 KKGEYIGII--GKNGSGKSTLAL 46 (274)
T ss_pred eCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 443
>PRK04040 adenylate kinase; Provisional
Probab=77.81 E-value=1.3 Score=43.82 Aligned_cols=16 Identities=19% Similarity=0.127 Sum_probs=13.3
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
..++ |++||||||++.
T Consensus 5 i~v~--G~pG~GKtt~~~ 20 (188)
T PRK04040 5 VVVT--GVPGVGKTTVLN 20 (188)
T ss_pred EEEE--eCCCCCHHHHHH
Confidence 4445 999999999987
No 444
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=77.80 E-value=1.3 Score=45.87 Aligned_cols=13 Identities=23% Similarity=0.153 Sum_probs=12.1
Q ss_pred EcCCccchhhhcc
Q psy13077 290 AFPSACGKTNLAM 302 (630)
Q Consensus 290 afpSg~GKTtLam 302 (630)
.|++||||||+|.
T Consensus 8 ~G~pGSGKSTla~ 20 (300)
T PHA02530 8 VGVPGSGKSTWAR 20 (300)
T ss_pred EcCCCCCHHHHHH
Confidence 4999999999987
No 445
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=77.76 E-value=1.3 Score=46.60 Aligned_cols=18 Identities=22% Similarity=0.141 Sum_probs=14.8
Q ss_pred CCEEEEEeEcCCccchhhhc
Q psy13077 282 GQKKYIAAAFPSACGKTNLA 301 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLa 301 (630)
+--.+|. ||+|||||++|
T Consensus 58 ~~~vll~--G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFT--GNPGTGKTTVA 75 (284)
T ss_pred CceEEEE--cCCCCCHHHHH
Confidence 3346677 99999999999
No 446
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=77.74 E-value=1.4 Score=46.50 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=17.8
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||+|||||||.-
T Consensus 26 ~~Gei~~l~--G~NGaGKTTLl~ 46 (301)
T TIGR03522 26 QKGRIVGFL--GPNGAGKSTTMK 46 (301)
T ss_pred eCCeEEEEE--CCCCCCHHHHHH
Confidence 568887777 999999999954
No 447
>PRK13947 shikimate kinase; Provisional
Probab=77.74 E-value=1.3 Score=41.80 Aligned_cols=17 Identities=18% Similarity=0.001 Sum_probs=14.1
Q ss_pred EEEEeEcCCccchhhhccc
Q psy13077 285 KYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam~ 303 (630)
.++. |++||||||+|-.
T Consensus 4 I~l~--G~~GsGKst~a~~ 20 (171)
T PRK13947 4 IVLI--GFMGTGKTTVGKR 20 (171)
T ss_pred EEEE--cCCCCCHHHHHHH
Confidence 4555 9999999999874
No 448
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=77.74 E-value=1.4 Score=45.94 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||+|||||.-
T Consensus 31 ~~Ge~~~ii--G~NGaGKSTLl~ 51 (287)
T PRK13641 31 EEGSFVALV--GHTGSGKSTLMQ 51 (287)
T ss_pred eCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 449
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=77.58 E-value=1.1 Score=42.30 Aligned_cols=16 Identities=31% Similarity=0.202 Sum_probs=11.4
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
..|+ |..+||||||+.
T Consensus 2 I~i~--G~~stGKTTL~~ 17 (163)
T PF13521_consen 2 IVIT--GGPSTGKTTLIE 17 (163)
T ss_dssp EEEE----TTSHHHHHHH
T ss_pred EEEE--CCCCCCHHHHHH
Confidence 3455 999999999987
No 450
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=77.53 E-value=1.3 Score=44.85 Aligned_cols=18 Identities=39% Similarity=0.438 Sum_probs=14.3
Q ss_pred EEEeEcCCccchhhhccc
Q psy13077 286 YIAAAFPSACGKTNLAML 303 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam~ 303 (630)
.++-.|||||||||++-+
T Consensus 4 ~i~i~G~~GsGKst~~~~ 21 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKA 21 (217)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 345559999999999873
No 451
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=77.43 E-value=1.5 Score=50.18 Aligned_cols=21 Identities=24% Similarity=0.135 Sum_probs=18.7
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||.-
T Consensus 31 ~~Ge~~~ii--G~NGsGKSTLlk 51 (556)
T PRK11819 31 FPGAKIGVL--GLNGAGKSTLLR 51 (556)
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 579888888 999999999965
No 452
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=77.38 E-value=1.4 Score=49.54 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=17.9
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+..-+. ||||||||||.-
T Consensus 28 ~~Ge~~~l~--G~NGsGKSTLl~ 48 (501)
T PRK10762 28 YPGRVMALV--GENGAGKSTMMK 48 (501)
T ss_pred cCCeEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999954
No 453
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=77.37 E-value=1.2 Score=43.10 Aligned_cols=17 Identities=29% Similarity=0.280 Sum_probs=11.4
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
..++. ||.|||||++.+
T Consensus 19 ~~~i~--GpPGTGKT~~l~ 35 (236)
T PF13086_consen 19 ITLIQ--GPPGTGKTTTLA 35 (236)
T ss_dssp -EEEE---STTSSHHHHHH
T ss_pred CEEEE--CCCCCChHHHHH
Confidence 35555 999999997654
No 454
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=77.32 E-value=1.5 Score=48.44 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||..
T Consensus 48 ~~Gei~~I~--G~nGsGKSTLlr 68 (382)
T TIGR03415 48 EEGEICVLM--GLSGSGKSSLLR 68 (382)
T ss_pred cCCCEEEEE--CCCCCcHHHHHH
Confidence 568888888 999999999975
No 455
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=77.12 E-value=1.6 Score=46.01 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. |+||||||||..
T Consensus 61 ~~Ge~~~li--G~NGsGKSTLl~ 81 (282)
T cd03291 61 EKGEMLAIT--GSTGSGKTSLLM 81 (282)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999976
No 456
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=77.09 E-value=1.6 Score=46.14 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+...+. |+||||||||..
T Consensus 69 ~~Ge~~~Iv--G~nGsGKSTLl~ 89 (305)
T PRK14264 69 PEKSVTALI--GPSGCGKSTFLR 89 (305)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 468888899 999999999975
No 457
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=77.08 E-value=1.5 Score=49.43 Aligned_cols=21 Identities=38% Similarity=0.328 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||.-
T Consensus 308 ~~Ge~~~l~--G~NGsGKSTLl~ 328 (520)
T TIGR03269 308 KEGEIFGIV--GTSGAGKTTLSK 328 (520)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 458
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=77.07 E-value=1.1 Score=44.85 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=14.0
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
..+++ |+|||||||+|.
T Consensus 5 ~i~i~--G~~G~GKst~a~ 21 (197)
T PRK12339 5 IHFIG--GIPGVGKTSISG 21 (197)
T ss_pred EEEEE--CCCCCCHHHHHH
Confidence 44445 999999999988
No 459
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=77.01 E-value=1.2 Score=47.85 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=15.8
Q ss_pred CEEEEEeEcCCccchhhhccc
Q psy13077 283 QKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam~ 303 (630)
|-.+|+ ||.|.||||||++
T Consensus 53 DHvLl~--GPPGlGKTTLA~I 71 (332)
T COG2255 53 DHVLLF--GPPGLGKTTLAHI 71 (332)
T ss_pred CeEEee--CCCCCcHHHHHHH
Confidence 345677 9999999999995
No 460
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=76.98 E-value=1.5 Score=49.55 Aligned_cols=21 Identities=19% Similarity=0.369 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+...+. ||||||||||.-
T Consensus 25 ~~Ge~~~li--G~NGsGKSTLl~ 45 (530)
T PRK15064 25 GGGNRYGLI--GANGCGKSTFMK 45 (530)
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 461
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=76.93 E-value=1.5 Score=49.60 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 310 ~~Ge~~~i~--G~nGsGKSTLlk 330 (529)
T PRK15134 310 RPGETLGLV--GESGSGKSTTGL 330 (529)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 462
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=76.73 E-value=1.5 Score=49.15 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=18.1
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 25 ~~Ge~~~li--G~nGsGKSTLl~ 45 (500)
T TIGR02633 25 RPGECVGLC--GENGAGKSTLMK 45 (500)
T ss_pred eCCcEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999964
No 463
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=76.53 E-value=1.5 Score=50.85 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. |+||||||||..+
T Consensus 40 ~~Ge~~~lv--G~nGsGKSTLl~~ 61 (623)
T PRK10261 40 QRGETLAIV--GESGSGKSVTALA 61 (623)
T ss_pred CCCCEEEEE--CCCCChHHHHHHH
Confidence 568888888 9999999999863
No 464
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=76.46 E-value=1.6 Score=49.33 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 35 ~~Ge~~~li--G~NGsGKSTLl~ 55 (510)
T PRK15439 35 HAGEVHALL--GGNGAGKSTLMK 55 (510)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 465
>PRK08356 hypothetical protein; Provisional
Probab=76.40 E-value=1.6 Score=42.87 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=14.1
Q ss_pred EEEeEcCCccchhhhccc
Q psy13077 286 YIAAAFPSACGKTNLAML 303 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam~ 303 (630)
.++-.||+||||||+|-.
T Consensus 7 ~i~~~G~~gsGK~t~a~~ 24 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKF 24 (195)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 344459999999999873
No 466
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=76.35 E-value=1.5 Score=49.44 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=17.9
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+..-+. ||||||||||.-
T Consensus 29 ~~Ge~~~l~--G~nGsGKSTLl~ 49 (506)
T PRK13549 29 RAGEIVSLC--GENGAGKSTLMK 49 (506)
T ss_pred eCCeEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999964
No 467
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=76.33 E-value=1.7 Score=44.05 Aligned_cols=17 Identities=29% Similarity=0.155 Sum_probs=14.6
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
...+. |++|||||||+.
T Consensus 45 ~~~l~--G~~G~GKTtl~~ 61 (269)
T TIGR03015 45 FILIT--GEVGAGKTTLIR 61 (269)
T ss_pred EEEEE--cCCCCCHHHHHH
Confidence 56666 999999999987
No 468
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=76.32 E-value=1.6 Score=48.87 Aligned_cols=21 Identities=14% Similarity=0.085 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 22 ~~Ge~~~li--G~nGsGKSTLl~ 42 (491)
T PRK10982 22 RPHSIHALM--GENGAGKSTLLK 42 (491)
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 578888888 999999999964
No 469
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=76.25 E-value=1.7 Score=43.36 Aligned_cols=21 Identities=29% Similarity=0.437 Sum_probs=18.7
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|....+. |++|+|||+|++
T Consensus 14 ~~g~~~li~--G~~G~GKt~~~~ 34 (224)
T TIGR03880 14 PEGHVIVVI--GEYGTGKTTFSL 34 (224)
T ss_pred CCCeEEEEE--CCCCCCHHHHHH
Confidence 668888888 999999999988
No 470
>PRK14532 adenylate kinase; Provisional
Probab=76.22 E-value=1.5 Score=42.30 Aligned_cols=17 Identities=29% Similarity=0.194 Sum_probs=13.8
Q ss_pred EEEEeEcCCccchhhhccc
Q psy13077 285 KYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam~ 303 (630)
.+++ ||+||||||+|..
T Consensus 3 i~~~--G~pGsGKsT~a~~ 19 (188)
T PRK14532 3 LILF--GPPAAGKGTQAKR 19 (188)
T ss_pred EEEE--CCCCCCHHHHHHH
Confidence 3455 9999999999873
No 471
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=76.20 E-value=1.7 Score=44.32 Aligned_cols=17 Identities=24% Similarity=0.151 Sum_probs=13.7
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
...+. ||||||||||.-
T Consensus 27 ~~~Iv--G~NGsGKStll~ 43 (251)
T cd03273 27 FNAIT--GLNGSGKSNILD 43 (251)
T ss_pred eEEEE--CCCCCCHHHHHH
Confidence 45555 999999999954
No 472
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=76.13 E-value=1.5 Score=40.97 Aligned_cols=16 Identities=25% Similarity=0.148 Sum_probs=12.8
Q ss_pred EEeEcCCccchhhhcc
Q psy13077 287 IAAAFPSACGKTNLAM 302 (630)
Q Consensus 287 f~~afpSg~GKTtLam 302 (630)
++-.|++|||||||..
T Consensus 17 v~i~G~~g~GKStLl~ 32 (173)
T cd04155 17 ILILGLDNAGKTTILK 32 (173)
T ss_pred EEEEccCCCCHHHHHH
Confidence 3334999999999966
No 473
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=76.05 E-value=1.8 Score=46.62 Aligned_cols=21 Identities=24% Similarity=0.407 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. |+||||||||..
T Consensus 106 ~~Ge~v~Iv--G~~GsGKSTLl~ 126 (329)
T PRK14257 106 KRNKVTAFI--GPSGCGKSTFLR 126 (329)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999976
No 474
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=76.04 E-value=1.4 Score=45.85 Aligned_cols=19 Identities=26% Similarity=0.177 Sum_probs=14.5
Q ss_pred eEEEeccCCCCCCceEeec
Q psy13077 437 AIIFGGRRPQGVPLVYESF 455 (630)
Q Consensus 437 aIiFg~rd~~glPpV~e~~ 455 (630)
.+||+......+||--++.
T Consensus 130 s~i~l~Q~~~~lp~~iR~n 148 (241)
T PF04665_consen 130 SIIFLSQSYFHLPPNIRSN 148 (241)
T ss_pred EEEEEeeecccCCHHHhhc
Confidence 5788888888888866554
No 475
>PRK13975 thymidylate kinase; Provisional
Probab=76.03 E-value=1.6 Score=42.21 Aligned_cols=17 Identities=35% Similarity=0.223 Sum_probs=13.6
Q ss_pred EEeEcCCccchhhhccc
Q psy13077 287 IAAAFPSACGKTNLAML 303 (630)
Q Consensus 287 f~~afpSg~GKTtLam~ 303 (630)
++--|+.||||||++.+
T Consensus 5 I~ieG~~GsGKtT~~~~ 21 (196)
T PRK13975 5 IVFEGIDGSGKTTQAKL 21 (196)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 33349999999999873
No 476
>PRK01184 hypothetical protein; Provisional
Probab=76.02 E-value=1.6 Score=42.09 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=12.2
Q ss_pred EcCCccchhhhccc
Q psy13077 290 AFPSACGKTNLAML 303 (630)
Q Consensus 290 afpSg~GKTtLam~ 303 (630)
.||+||||||+|.+
T Consensus 7 ~G~~GsGKsT~a~~ 20 (184)
T PRK01184 7 VGMPGSGKGEFSKI 20 (184)
T ss_pred ECCCCCCHHHHHHH
Confidence 39999999999774
No 477
>PRK06921 hypothetical protein; Provisional
Probab=75.91 E-value=1.7 Score=45.48 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=17.8
Q ss_pred CCCEEEEEeEcCCccchhhhccc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam~ 303 (630)
.+...+|. |++|||||.|+..
T Consensus 116 ~~~~l~l~--G~~G~GKThLa~a 136 (266)
T PRK06921 116 RKNSIALL--GQPGSGKTHLLTA 136 (266)
T ss_pred CCCeEEEE--CCCCCcHHHHHHH
Confidence 35678888 9999999999873
No 478
>PRK06761 hypothetical protein; Provisional
Probab=75.66 E-value=1.6 Score=46.33 Aligned_cols=31 Identities=10% Similarity=0.136 Sum_probs=19.9
Q ss_pred CCCCChHHHHHHHHHHHHhhccCCCcEEEEe
Q psy13077 492 FFGYNFGDYLKHWLSMEQRTNAKLPKVFHVN 522 (630)
Q Consensus 492 F~~y~~g~Y~~~wl~lg~~~~~~~pkif~VN 522 (630)
+++.+...=..|..++.+-+..-.|.++++.
T Consensus 159 ~~~~~~~~i~~y~~~l~~~i~~l~p~l~yl~ 189 (282)
T PRK06761 159 KYGAQKEKITNYVMKLAKIIENLNPMLFYLE 189 (282)
T ss_pred HcCCCHHHHHHHHHHHHHHHhccCcEEEEec
Confidence 4444555545555556666666779999887
No 479
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=75.66 E-value=1.7 Score=49.05 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=18.2
Q ss_pred cccCCCCCEEEEEeEcCCccchhhhccc
Q psy13077 276 GITNPEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 276 gv~~p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
|..-|.| .++. ||+|||||+||..
T Consensus 84 g~~~~~g--iLL~--GppGtGKT~la~a 107 (495)
T TIGR01241 84 GAKIPKG--VLLV--GPPGTGKTLLAKA 107 (495)
T ss_pred CCCCCCc--EEEE--CCCCCCHHHHHHH
Confidence 3344555 7788 9999999999863
No 480
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=75.61 E-value=2.4 Score=47.02 Aligned_cols=36 Identities=33% Similarity=0.382 Sum_probs=25.1
Q ss_pred CCCCEEEEEeEcCCccchhhhcc----cCCCCCCCeeEEeecc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGDD 318 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam----~~p~~pgwk~~lIGDD 318 (630)
+.|+..-+. ||+|||||||.- +.++..| ++.+-|.+
T Consensus 27 ~~Geiv~li--GpNGaGKSTLLk~LaGll~p~sG-~I~l~G~~ 66 (402)
T PRK09536 27 REGSLVGLV--GPNGAGKTTLLRAINGTLTPTAG-TVLVAGDD 66 (402)
T ss_pred CCCCEEEEE--CCCCchHHHHHHHHhcCCCCCCc-EEEECCEE
Confidence 578888888 999999999843 2233456 45555544
No 481
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=75.52 E-value=1.7 Score=48.62 Aligned_cols=35 Identities=23% Similarity=0.134 Sum_probs=21.8
Q ss_pred CCEEEEEeEcCCccchhhhcccCC-----CCCCCeeEEeecc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAMLNP-----TLPGYKVECVGDD 318 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam~~p-----~~pgwk~~lIGDD 318 (630)
|+...|. ||+|+||||+++.-. ...|.+|-+|--|
T Consensus 221 ~~~i~~v--GptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D 260 (424)
T PRK05703 221 GGVVALV--GPTGVGKTTTLAKLAARYALLYGKKKVALITLD 260 (424)
T ss_pred CcEEEEE--CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 5555555 999999999766211 0124566666544
No 482
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=75.47 E-value=1.8 Score=49.04 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+...+. ||||||||||.-
T Consensus 343 ~~Ge~~~l~--G~NGsGKSTLl~ 363 (530)
T PRK15064 343 EAGERLAII--GENGVGKTTLLR 363 (530)
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 483
>PRK04182 cytidylate kinase; Provisional
Probab=75.47 E-value=1.6 Score=41.10 Aligned_cols=17 Identities=41% Similarity=0.542 Sum_probs=13.6
Q ss_pred EEeEcCCccchhhhccc
Q psy13077 287 IAAAFPSACGKTNLAML 303 (630)
Q Consensus 287 f~~afpSg~GKTtLam~ 303 (630)
++-.|++||||||+|..
T Consensus 3 I~i~G~~GsGKstia~~ 19 (180)
T PRK04182 3 ITISGPPGSGKTTVARL 19 (180)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 33449999999999874
No 484
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=75.38 E-value=1.4 Score=42.18 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=18.3
Q ss_pred hhHhhhcCCHHHHHHHHHHHHHHHHH
Q psy13077 582 DLEELFSFDKSFWEQEVQDLQRYFNE 607 (630)
Q Consensus 582 ~~~~~~~~d~~~w~~e~~~l~~~f~~ 607 (630)
+.++.+.-.-+.|.+....+.++|.+
T Consensus 153 d~~~~i~~R~~~y~~~~~~i~~~~~~ 178 (194)
T cd01428 153 DNEETIKKRLEVYKEQTAPLIDYYKK 178 (194)
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 44566666777777777888877763
No 485
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=75.25 E-value=1.6 Score=45.17 Aligned_cols=20 Identities=40% Similarity=0.463 Sum_probs=16.8
Q ss_pred CCEEEEEeEcCCccchhhhccc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam~ 303 (630)
|.-.++. ||+|||||+||..
T Consensus 21 g~~vLL~--G~~GtGKT~lA~~ 40 (262)
T TIGR02640 21 GYPVHLR--GPAGTGKTTLAMH 40 (262)
T ss_pred CCeEEEE--cCCCCCHHHHHHH
Confidence 5567777 9999999999984
No 486
>PRK08181 transposase; Validated
Probab=75.22 E-value=1.6 Score=45.91 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=16.7
Q ss_pred CCEEEEEeEcCCccchhhhccc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam~ 303 (630)
++-.+|. ||+|||||.||..
T Consensus 106 ~~nlll~--Gp~GtGKTHLa~A 125 (269)
T PRK08181 106 GANLLLF--GPPGGGKSHLAAA 125 (269)
T ss_pred CceEEEE--ecCCCcHHHHHHH
Confidence 4457888 9999999999873
No 487
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=75.20 E-value=1.9 Score=43.89 Aligned_cols=22 Identities=41% Similarity=0.526 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
|.|+..-+. ||||+||+||--|
T Consensus 23 ~~ge~vAi~--GpSGaGKSTLLnL 44 (231)
T COG3840 23 PAGEIVAIL--GPSGAGKSTLLNL 44 (231)
T ss_pred cCCcEEEEE--CCCCccHHHHHHH
Confidence 678877777 9999999999654
No 488
>PRK13342 recombination factor protein RarA; Reviewed
Probab=75.15 E-value=1.7 Score=47.93 Aligned_cols=18 Identities=33% Similarity=0.377 Sum_probs=15.2
Q ss_pred EEEEEeEcCCccchhhhccc
Q psy13077 284 KKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam~ 303 (630)
..+|. ||+||||||||.+
T Consensus 38 ~ilL~--GppGtGKTtLA~~ 55 (413)
T PRK13342 38 SMILW--GPPGTGKTTLARI 55 (413)
T ss_pred eEEEE--CCCCCCHHHHHHH
Confidence 56666 9999999999974
No 489
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=75.10 E-value=1.8 Score=50.31 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 27 ~~Ge~v~Lv--G~NGsGKSTLLr 47 (635)
T PRK11147 27 EDNERVCLV--GRNGAGKSTLMK 47 (635)
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999975
No 490
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=75.01 E-value=1.7 Score=46.60 Aligned_cols=17 Identities=47% Similarity=0.581 Sum_probs=14.1
Q ss_pred EEEeEcCCccchhhhcc
Q psy13077 286 YIAAAFPSACGKTNLAM 302 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam 302 (630)
.++-+||||||||+||.
T Consensus 6 ~i~i~GptgsGKt~la~ 22 (307)
T PRK00091 6 VIVIVGPTASGKTALAI 22 (307)
T ss_pred EEEEECCCCcCHHHHHH
Confidence 44445999999999998
No 491
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=74.97 E-value=1.8 Score=48.76 Aligned_cols=21 Identities=14% Similarity=0.101 Sum_probs=18.1
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+..-+. ||+|||||||.-
T Consensus 277 ~~Ge~~~ii--G~NGsGKSTLlk 297 (501)
T PRK11288 277 RAGEIVGLF--GLVGAGRSELMK 297 (501)
T ss_pred eCCcEEEEE--cCCCCCHHHHHH
Confidence 568888888 999999999854
No 492
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=74.76 E-value=1.6 Score=44.09 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=15.7
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
|.+..++ ||+|||||+|++
T Consensus 1 g~~~ll~--g~~G~GKS~lal 19 (239)
T cd01125 1 GYVSALV--APGGTGKSSLLL 19 (239)
T ss_pred CceeEEE--cCCCCCHHHHHH
Confidence 4456666 999999999988
No 493
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=74.61 E-value=1.6 Score=49.94 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=14.2
Q ss_pred EEEeEcCCccchhhhccc
Q psy13077 286 YIAAAFPSACGKTNLAML 303 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam~ 303 (630)
.++-.|||||||||+|..
T Consensus 286 ii~i~G~sgsGKst~a~~ 303 (512)
T PRK13477 286 IIAIDGPAGAGKSTVTRA 303 (512)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 344459999999999873
No 494
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=74.60 E-value=1.9 Score=49.12 Aligned_cols=21 Identities=24% Similarity=0.135 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. |+||||||||.-
T Consensus 29 ~~Ge~~~li--G~NGsGKSTLl~ 49 (552)
T TIGR03719 29 FPGAKIGVL--GLNGAGKSTLLR 49 (552)
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 579888888 999999999965
No 495
>PRK04296 thymidine kinase; Provisional
Probab=74.59 E-value=1.6 Score=43.03 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=16.2
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
|...+++ ||.|+||||+++
T Consensus 2 g~i~lit--G~~GsGKTT~~l 20 (190)
T PRK04296 2 AKLEFIY--GAMNSGKSTELL 20 (190)
T ss_pred cEEEEEE--CCCCCHHHHHHH
Confidence 4567778 999999999987
No 496
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=74.53 E-value=1.6 Score=45.60 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=14.4
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
-.+|. ||+||||||||.
T Consensus 38 ~lll~--Gp~GtGKT~la~ 54 (337)
T PRK12402 38 HLLVQ--GPPGSGKTAAVR 54 (337)
T ss_pred eEEEE--CCCCCCHHHHHH
Confidence 36666 999999999985
No 497
>PLN03025 replication factor C subunit; Provisional
Probab=74.49 E-value=1.9 Score=45.81 Aligned_cols=18 Identities=22% Similarity=0.301 Sum_probs=14.9
Q ss_pred EEEEEeEcCCccchhhhccc
Q psy13077 284 KKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam~ 303 (630)
-.+|. ||+||||||+|..
T Consensus 36 ~lll~--Gp~G~GKTtla~~ 53 (319)
T PLN03025 36 NLILS--GPPGTGKTTSILA 53 (319)
T ss_pred eEEEE--CCCCCCHHHHHHH
Confidence 35666 9999999999974
No 498
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=74.42 E-value=1.8 Score=46.45 Aligned_cols=21 Identities=29% Similarity=0.157 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...++ |++|||||+|++
T Consensus 94 ~~g~i~~i~--G~~g~GKT~l~~ 114 (316)
T TIGR02239 94 ETGSITEIF--GEFRTGKTQLCH 114 (316)
T ss_pred CCCeEEEEE--CCCCCCcCHHHH
Confidence 568888888 999999999987
No 499
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=74.34 E-value=1.8 Score=48.41 Aligned_cols=21 Identities=19% Similarity=0.102 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 272 ~~Ge~~~l~--G~nGsGKSTLl~ 292 (491)
T PRK10982 272 HKGEILGIA--GLVGAKRTDIVE 292 (491)
T ss_pred eCCcEEEEe--cCCCCCHHHHHH
Confidence 568888888 999999999954
No 500
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=74.33 E-value=2 Score=43.41 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=15.1
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.|.-..+. ||||+|||||.-
T Consensus 3 ~G~l~vls--gPSG~GKsTl~k 22 (191)
T COG0194 3 KGLLIVLS--GPSGVGKSTLVK 22 (191)
T ss_pred CceEEEEE--CCCCCCHHHHHH
Confidence 46445555 999999999954
Done!